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| author | Vladimír Čunát <vcunat@gmail.com> | 2017-02-27 20:15:27 +0100 |
|---|---|---|
| committer | Vladimír Čunát <vcunat@gmail.com> | 2017-02-27 20:15:27 +0100 |
| commit | a1919db7cd20e0bd5102d9e806a70e49194c177a (patch) | |
| tree | 2580614733b3c910ee5adc0dbe9ec0f12f038554 /pkgs | |
| parent | 18bd007714db261bedad8d3f175e0df5f3a60cdb (diff) | |
| parent | 8def08a56cf304fbc55090b280e35b798b72055a (diff) | |
| download | nixlib-a1919db7cd20e0bd5102d9e806a70e49194c177a.tar nixlib-a1919db7cd20e0bd5102d9e806a70e49194c177a.tar.gz nixlib-a1919db7cd20e0bd5102d9e806a70e49194c177a.tar.bz2 nixlib-a1919db7cd20e0bd5102d9e806a70e49194c177a.tar.lz nixlib-a1919db7cd20e0bd5102d9e806a70e49194c177a.tar.xz nixlib-a1919db7cd20e0bd5102d9e806a70e49194c177a.tar.zst nixlib-a1919db7cd20e0bd5102d9e806a70e49194c177a.zip | |
Merge branch 'master' into staging
Diffstat (limited to 'pkgs')
787 files changed, 12578 insertions, 12709 deletions
diff --git a/pkgs/applications/audio/amarok/default.nix b/pkgs/applications/audio/amarok/default.nix index af796f7490a8..3b675cd9020b 100644 --- a/pkgs/applications/audio/amarok/default.nix +++ b/pkgs/applications/audio/amarok/default.nix @@ -1,6 +1,6 @@ { stdenv, fetchurl, lib, automoc4, cmake, perl, pkgconfig , qtscriptgenerator, gettext, curl , libxml2, mysql, taglib -, taglib_extras, loudmouth , kdelibs , qca2, libmtp, liblastfm, libgpod +, taglib_extras, loudmouth , kdelibs4, qca2, libmtp, liblastfm, libgpod , phonon , strigi, soprano, qjson, ffmpeg, libofa, nepomuk_core ? null , lz4, lzo, snappy, libaio, pcre }: @@ -22,7 +22,7 @@ stdenv.mkDerivation rec { buildInputs = [ qtscriptgenerator stdenv.cc.libc gettext curl libxml2 mysql.server/*libmysqld*/ - taglib taglib_extras loudmouth kdelibs phonon strigi soprano qca2 + taglib taglib_extras loudmouth kdelibs4 phonon strigi soprano qca2 libmtp liblastfm libgpod qjson ffmpeg libofa nepomuk_core lz4 lzo snappy libaio pcre ]; @@ -43,6 +43,6 @@ stdenv.mkDerivation rec { description = "Popular music player for KDE"; license = "GPL"; homepage = http://amarok.kde.org; - inherit (kdelibs.meta) platforms maintainers; + inherit (kdelibs4.meta) platforms; }; } diff --git a/pkgs/applications/audio/ardour/default.nix b/pkgs/applications/audio/ardour/default.nix index 6745109d7d04..90ab110bf198 100644 --- a/pkgs/applications/audio/ardour/default.nix +++ b/pkgs/applications/audio/ardour/default.nix @@ -16,7 +16,7 @@ let # "git describe" when _not_ on an annotated tag(!): MAJOR.MINOR-REV-HASH. # Version to build. - tag = "5.5"; + tag = "5.6"; in @@ -25,8 +25,8 @@ stdenv.mkDerivation rec { src = fetchgit { url = "git://git.ardour.org/ardour/ardour.git"; - rev = "bb3312c3bb9c6ed9b75ac6739a6ee720ddf86c86"; - sha256 = "1yrg0d86k9fqw7lmzjglilbadb4cjqxqkf6ii4bjs6rihj6b0qrf"; + rev = "08353095dfee421f299d30d5d91259bc2df7e19d"; + sha256 = "1fgvjmvdyh61qn8azpmh19ac58ps5sl2dywwshr56v0svakhwwh9"; }; buildInputs = diff --git a/pkgs/applications/audio/banshee/default.nix b/pkgs/applications/audio/banshee/default.nix index 4e5086bdb26d..d1c0c2afa83b 100644 --- a/pkgs/applications/audio/banshee/default.nix +++ b/pkgs/applications/audio/banshee/default.nix @@ -1,5 +1,5 @@ -{ pkgs, stdenv, lib, fetchurl, intltool, pkgconfig, gstreamer, gst_plugins_base -, gst_plugins_good, gst_plugins_bad, gst_plugins_ugly, gst_ffmpeg, glib +{ pkgs, stdenv, lib, fetchurl, intltool, pkgconfig, gstreamer, gst-plugins-base +, gst-plugins-good, gst-plugins-bad, gst-plugins-ugly, gst-ffmpeg, glib , mono, mono-addins, dbus-sharp-1_0, dbus-sharp-glib-1_0, notify-sharp, gtk-sharp-2_0 , boo, gdata-sharp, taglib-sharp, sqlite, gnome-sharp, gconf, gtk-sharp-beans, gio-sharp , libmtp, libgpod, mono-zeroconf }: @@ -17,8 +17,8 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ pkgconfig intltool ]; buildInputs = [ - gtk-sharp-2_0.gtk gstreamer gst_plugins_base gst_plugins_good - gst_plugins_bad gst_plugins_ugly gst_ffmpeg + gtk-sharp-2_0.gtk gstreamer gst-plugins-base gst-plugins-good + gst-plugins-bad gst-plugins-ugly gst-ffmpeg mono dbus-sharp-1_0 dbus-sharp-glib-1_0 mono-addins notify-sharp gtk-sharp-2_0 boo gdata-sharp taglib-sharp sqlite gnome-sharp gconf gtk-sharp-beans gio-sharp libmtp libgpod mono-zeroconf diff --git a/pkgs/applications/audio/cantata/default.nix b/pkgs/applications/audio/cantata/default.nix index f4e1fe8b151c..89aadf49fb84 100644 --- a/pkgs/applications/audio/cantata/default.nix +++ b/pkgs/applications/audio/cantata/default.nix @@ -2,10 +2,6 @@ , withQt4 ? false, qt4 , withQt5 ? true, qtbase, qtsvg, qttools, makeQtWrapper -# I'm unable to make KDE work here, crashes at runtime so I simply -# make Qt4 the default until someone who wants KDE can figure it out. -, withKDE4 ? false, kde4 - # Cantata doesn't build with cdparanoia enabled so we disable that # default for now until I (or someone else) figure it out. , withCdda ? false, cdparanoia @@ -24,10 +20,9 @@ }: # One and only one front-end. -assert withQt5 -> withQt4 == false && withKDE4 == false; -assert withQt4 -> withQt5 == false && withKDE4 == false; -assert withKDE4 -> withQt4 == false && withQt5 == false; -assert withQt4 || withQt5 || withKDE4; +assert withQt5 -> withQt4 == false; +assert withQt4 -> withQt5 == false; +assert withQt4 || withQt5; # Inter-dependencies. assert withCddb -> withCdda && withTaglib; @@ -58,7 +53,6 @@ stdenv.mkDerivation rec { [ cmake ] ++ stdenv.lib.optional withQt4 qt4 ++ stdenv.lib.optionals withQt5 [ qtbase qtsvg qttools ] - ++ stdenv.lib.optional withKDE4 kde4.kdelibs ++ stdenv.lib.optionals withTaglib [ taglib taglib_extras ] ++ stdenv.lib.optionals withReplaygain [ ffmpeg speex mpg123 ] ++ stdenv.lib.optional withCdda cdparanoia @@ -66,16 +60,14 @@ stdenv.mkDerivation rec { ++ stdenv.lib.optional withLame lame ++ stdenv.lib.optional withMtp libmtp ++ stdenv.lib.optional withMusicbrainz libmusicbrainz5 - ++ stdenv.lib.optional (withTaglib && !withKDE4 && withDevices) udisks2; + ++ stdenv.lib.optional (withTaglib && withDevices) udisks2; nativeBuildInputs = stdenv.lib.optional withQt5 makeQtWrapper; unpackPhase = "tar -xvf $src"; sourceRoot = "${name}"; - # Qt4 is implicit when KDE is switched off. cmakeFlags = stdenv.lib.flatten [ - (fstats withKDE4 [ "KDE" "KWALLET" ]) (fstat withQt5 "QT5") (fstats withTaglib [ "TAGLIB" "TAGLIB_EXTRAS" ]) (fstats withReplaygain [ "FFMPEG" "MPG123" "SPEEXDSP" ]) diff --git a/pkgs/applications/audio/clementine/default.nix b/pkgs/applications/audio/clementine/default.nix index cf58dffef02c..01c8ecaced0d 100644 --- a/pkgs/applications/audio/clementine/default.nix +++ b/pkgs/applications/audio/clementine/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchurl, boost, cmake, gettext, gstreamer, gst_plugins_base +{ stdenv, fetchurl, boost, cmake, gettext, gstreamer, gst-plugins-base , liblastfm, qt4, taglib, fftw, glew, qjson, sqlite, libgpod, libplist , usbmuxd, libmtp, gvfs, libcdio, libspotify, protobuf, qca2, pkgconfig , sparsehash, config, makeWrapper, runCommand, gst_plugins }: @@ -27,7 +27,7 @@ let fftw gettext glew - gst_plugins_base + gst-plugins-base gstreamer gvfs libcdio diff --git a/pkgs/applications/audio/cmus/default.nix b/pkgs/applications/audio/cmus/default.nix index bb2deb71ba20..c9346248438b 100644 --- a/pkgs/applications/audio/cmus/default.nix +++ b/pkgs/applications/audio/cmus/default.nix @@ -29,11 +29,10 @@ , tremorSupport ? false, tremor ? null , vorbisSupport ? true, libvorbis ? null , wavpackSupport ? true, wavpack ? null +, opusSupport ? true, opusfile ? null -# can't make these work, something is broken -#, aacSupport ? true, faac ? null -#, mp4Support ? true, mp4v2 ? null -#, opusSupport ? true, opusfile ? null +, aacSupport ? false, faad2 ? null # already handled by ffmpeg +, mp4Support ? false, mp4v2 ? null # ffmpeg does support mp4 better # not in nixpkgs #, vtxSupport ? true, libayemu ? null @@ -82,10 +81,10 @@ let (mkFlag tremorSupport "CONFIG_TREMOR=y" tremor) (mkFlag vorbisSupport "CONFIG_VORBIS=y" libvorbis) (mkFlag wavpackSupport "CONFIG_WAVPACK=y" wavpack) + (mkFlag opusSupport "CONFIG_OPUS=y" opusfile) - #(mkFlag opusSupport "CONFIG_OPUS=y" opusfile) - #(mkFlag mp4Support "CONFIG_MP4=y" mp4v2) - #(mkFlag aacSupport "CONFIG_AAC=y" faac) + (mkFlag mp4Support "CONFIG_MP4=y" mp4v2) + (mkFlag aacSupport "CONFIG_AAC=y" faad2) #(mkFlag vtxSupport "CONFIG_VTX=y" libayemu) ]; diff --git a/pkgs/applications/audio/i-score/default.nix b/pkgs/applications/audio/i-score/default.nix index e3ebc5fde08e..1a47b74e21c7 100644 --- a/pkgs/applications/audio/i-score/default.nix +++ b/pkgs/applications/audio/i-score/default.nix @@ -6,7 +6,7 @@ gcc, ginac, jamomacore, - kde5, + kdnssd, libsndfile, ninja, portaudio, @@ -39,7 +39,7 @@ stdenv.mkDerivation rec { ginac gcc jamomacore - kde5.kdnssd + kdnssd libsndfile ninja portaudio diff --git a/pkgs/applications/audio/ir.lv2/default.nix b/pkgs/applications/audio/ir.lv2/default.nix index d6dbc4c55a98..cc613541a256 100644 --- a/pkgs/applications/audio/ir.lv2/default.nix +++ b/pkgs/applications/audio/ir.lv2/default.nix @@ -1,20 +1,21 @@ -{ stdenv, fetchurl, fftw, gtk, lv2, libsamplerate, libsndfile, pkgconfig, zita-convolver }: +{ stdenv, fetchFromGitHub, fftw, gtk2, lv2, libsamplerate, libsndfile, pkgconfig, zita-convolver }: stdenv.mkDerivation rec { name = "ir.lv2-${version}"; - version = "1.2.2"; + version = "1.2.3"; - src = fetchurl { - url = "http://factorial.hu/system/files/${name}.tar.gz"; - sha256 = "17a6h2mv9xv41jpbx6bdakkngin4kqzh2v67l4076ddq609k5a7v"; + src = fetchFromGitHub { + owner = "tomszilagyi"; + repo = "ir.lv2"; + rev = "${version}"; + sha256 = "16vy06qb0vgwg4yx15grzh5m2q3cbzm3jd0p37g2qb8rgvjhladg"; }; - buildInputs = [ fftw gtk lv2 libsamplerate libsndfile pkgconfig zita-convolver ]; + buildInputs = [ fftw gtk2 lv2 libsamplerate libsndfile zita-convolver ]; - buildPhase = '' - make - make convert4chan - ''; + nativeBuildInputs = [ pkgconfig ]; + + postBuild = "make convert4chan"; installPhase = '' mkdir -p "$out/bin" @@ -23,10 +24,6 @@ stdenv.mkDerivation rec { make PREFIX="$out" install install -Dm755 convert4chan "$out/bin/convert4chan" - # fixed location - sed -i 's/, but seem like its gone://' README - sed -i 's@rhythminmind.net/1313@rhythminmind.net/STN@' README - install -Dm644 README "$out/share/doc/README" ''; meta = with stdenv.lib; { diff --git a/pkgs/applications/audio/jackmix/default.nix b/pkgs/applications/audio/jackmix/default.nix index 8176a3404702..e9e3fd53e546 100644 --- a/pkgs/applications/audio/jackmix/default.nix +++ b/pkgs/applications/audio/jackmix/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchurl, pkgs, jack ? pkgs.libjack2 }: +{ stdenv, fetchurl, pkgconfig, scons, qt4, lash, libjack2, jack ? libjack2 }: stdenv.mkDerivation rec { name = "jackmix-0.5.2"; @@ -8,10 +8,10 @@ stdenv.mkDerivation rec { }; buildInputs = [ - pkgs.pkgconfig - pkgs.scons - pkgs.kde4.qt4 - pkgs.lash + pkgconfig + scons + qt4 + lash jack ]; diff --git a/pkgs/applications/audio/mod-distortion/default.nix b/pkgs/applications/audio/mod-distortion/default.nix index 7b17f21b613c..a18372870795 100644 --- a/pkgs/applications/audio/mod-distortion/default.nix +++ b/pkgs/applications/audio/mod-distortion/default.nix @@ -13,7 +13,7 @@ stdenv.mkDerivation rec { buildInputs = [ lv2 ]; - installFlags = [ "LV2_PATH=$out/lib/lv2" ]; + installFlags = [ "LV2_PATH=$(out)/lib/lv2" ]; meta = with stdenv.lib; { homepage = https://github.com/portalmod/mod-distortion; diff --git a/pkgs/applications/audio/morituri/default.nix b/pkgs/applications/audio/morituri/default.nix index 0ab0d24c2726..d4c67bb5622c 100644 --- a/pkgs/applications/audio/morituri/default.nix +++ b/pkgs/applications/audio/morituri/default.nix @@ -1,5 +1,5 @@ { stdenv, fetchgit, pythonPackages, cdparanoia, cdrdao -, gst_python, gst_plugins_base, gst_plugins_good +, gst-python, gst-plugins-base, gst-plugins-good , utillinux, makeWrapper, substituteAll, autoreconfHook }: let @@ -17,7 +17,7 @@ in stdenv.mkDerivation rec { }; pythonPath = with pythonPackages; [ - pygobject2 gst_python musicbrainzngs + pygobject2 gst-python musicbrainzngs pycdio pyxdg setuptools CDDB ]; @@ -25,7 +25,7 @@ in stdenv.mkDerivation rec { nativeBuildInputs = [ autoreconfHook ]; buildInputs = [ python cdparanoia cdrdao utillinux makeWrapper - gst_plugins_base gst_plugins_good + gst-plugins-base gst-plugins-good ] ++ pythonPath; patches = [ diff --git a/pkgs/applications/audio/opusfile/default.nix b/pkgs/applications/audio/opusfile/default.nix index f840ba278cfc..8a7ab8889a66 100644 --- a/pkgs/applications/audio/opusfile/default.nix +++ b/pkgs/applications/audio/opusfile/default.nix @@ -13,11 +13,11 @@ stdenv.mkDerivation rec { patches = [ ./include-multistream.patch ]; configureFlags = [ "--disable-examples" ]; - meta = { + meta = with stdenv.lib; { description = "High-level API for decoding and seeking in .opus files"; homepage = http://www.opus-codec.org/; - license = stdenv.lib.licenses.bsd3; - platforms = stdenv.lib.platforms.linux; - maintainers = with stdenv.lib.maintainers; [ fuuzetsu ]; + license = licenses.bsd3; + platforms = platforms.linux ++ platforms.darwin; + maintainers = with maintainers; [ fuuzetsu ]; }; } diff --git a/pkgs/applications/audio/quodlibet/default.nix b/pkgs/applications/audio/quodlibet/default.nix index 0546f9a0ad2e..fa582d852157 100644 --- a/pkgs/applications/audio/quodlibet/default.nix +++ b/pkgs/applications/audio/quodlibet/default.nix @@ -1,11 +1,11 @@ { stdenv, fetchurl, python2Packages, intltool -, gst_python, withGstPlugins ? false, gst_plugins_base ? null -, gst_plugins_good ? null, gst_plugins_ugly ? null, gst_plugins_bad ? null }: +, gst-python, withGstPlugins ? false, gst-plugins-base ? null +, gst-plugins-good ? null, gst-plugins-ugly ? null, gst-plugins-bad ? null }: -assert withGstPlugins -> gst_plugins_base != null - || gst_plugins_good != null - || gst_plugins_ugly != null - || gst_plugins_bad != null; +assert withGstPlugins -> gst-plugins-base != null + || gst-plugins-good != null + || gst-plugins-ugly != null + || gst-plugins-bad != null; let version = "2.6.3"; @@ -44,11 +44,11 @@ in buildPythonApplication { patches = [ ./quodlibet-package-plugins.patch ]; buildInputs = stdenv.lib.optionals withGstPlugins [ - gst_plugins_base gst_plugins_good gst_plugins_ugly gst_plugins_bad + gst-plugins-base gst-plugins-good gst-plugins-ugly gst-plugins-bad ]; propagatedBuildInputs = [ - mutagen pygtk pygobject2 dbus-python gst_python intltool + mutagen pygtk pygobject2 dbus-python gst-python intltool ]; postInstall = stdenv.lib.optionalString withGstPlugins '' diff --git a/pkgs/applications/audio/spotify/default.nix b/pkgs/applications/audio/spotify/default.nix index 72514d7b67b0..affb574d60bd 100644 --- a/pkgs/applications/audio/spotify/default.nix +++ b/pkgs/applications/audio/spotify/default.nix @@ -8,7 +8,7 @@ let # Please update the stable branch! # Latest version number can be found at: # http://repository-origin.spotify.com/pool/non-free/s/spotify-client/ - version = "1.0.49.125.g72ee7853-83"; + version = "1.0.49.125.g72ee7853-111"; deps = [ alsaLib @@ -53,7 +53,7 @@ stdenv.mkDerivation { src = fetchurl { url = "http://repository-origin.spotify.com/pool/non-free/s/spotify-client/spotify-client_${version}_amd64.deb"; - sha256 = "1sqi79yj503y4b7pfvr6xi0i8g7hj01hkhn0vpkc3y3jz5c0ih9g"; + sha256 = "0l008x06d257vcw6gq3q90hvv93cq6mxpj11by1np6bzzg61qv8x"; }; buildInputs = [ dpkg makeWrapper ]; diff --git a/pkgs/applications/audio/tomahawk/default.nix b/pkgs/applications/audio/tomahawk/default.nix index 7021cd165cfd..ca9f514eace1 100644 --- a/pkgs/applications/audio/tomahawk/default.nix +++ b/pkgs/applications/audio/tomahawk/default.nix @@ -3,12 +3,12 @@ , qtkeychain, quazip, sparsehash, taglib, websocketpp, makeWrapper , enableXMPP ? true, libjreen ? null -, enableKDE ? false, kdelibs ? null +, enableKDE ? false, kdelibs4 ? null , enableTelepathy ? false, telepathy_qt ? null }: assert enableXMPP -> libjreen != null; -assert enableKDE -> kdelibs != null; +assert enableKDE -> kdelibs4 != null; assert enableTelepathy -> telepathy_qt != null; stdenv.mkDerivation rec { @@ -30,7 +30,7 @@ stdenv.mkDerivation rec { qca2 qjson qt4 qtkeychain quazip sparsehash taglib websocketpp makeWrapper ] ++ stdenv.lib.optional enableXMPP libjreen - ++ stdenv.lib.optional enableKDE kdelibs + ++ stdenv.lib.optional enableKDE kdelibs4 ++ stdenv.lib.optional enableTelepathy telepathy_qt; postInstall = let diff --git a/pkgs/applications/audio/transcribe/default.nix b/pkgs/applications/audio/transcribe/default.nix index 55e4b8e00b65..5ec5087b9f26 100644 --- a/pkgs/applications/audio/transcribe/default.nix +++ b/pkgs/applications/audio/transcribe/default.nix @@ -1,6 +1,6 @@ { stdenv, fetchzip, lib, makeWrapper, alsaLib, atk, cairo, gdk_pixbuf -, glib, gst_ffmpeg, gst_plugins_bad, gst_plugins_base -, gst_plugins_good, gst_plugins_ugly, gstreamer, gtk2, libSM, libX11 +, glib, gst-ffmpeg, gst-plugins-bad, gst-plugins-base +, gst-plugins-good, gst-plugins-ugly, gstreamer, gtk2, libSM, libX11 , libpng12, pango, zlib }: stdenv.mkDerivation rec { @@ -21,14 +21,14 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ makeWrapper ]; - buildInputs = [ gst_plugins_base gst_plugins_good - gst_plugins_bad gst_plugins_ugly gst_ffmpeg ]; + buildInputs = [ gst-plugins-base gst-plugins-good + gst-plugins-bad gst-plugins-ugly gst-ffmpeg ]; dontPatchELF = true; libPath = lib.makeLibraryPath [ stdenv.cc.cc glib gtk2 atk pango cairo gdk_pixbuf alsaLib - libX11 libSM libpng12 gstreamer gst_plugins_base zlib + libX11 libSM libpng12 gstreamer gst-plugins-base zlib ]; installPhase = '' diff --git a/pkgs/applications/audio/x42-plugins/default.nix b/pkgs/applications/audio/x42-plugins/default.nix index 64ffeced13de..69288880cb2a 100644 --- a/pkgs/applications/audio/x42-plugins/default.nix +++ b/pkgs/applications/audio/x42-plugins/default.nix @@ -3,12 +3,12 @@ , mesa_glu, lv2, mesa, gtk2, cairo, pango, fftwFloat, zita-convolver }: stdenv.mkDerivation rec { - version = "20160825"; + version = "20161230"; name = "x42-plugins-${version}"; src = fetchurl { url = "http://gareus.org/misc/x42-plugins/${name}.tar.xz"; - sha256 = "13ln5ccmrrc07ykfp040389av60dlgqz1kh6vfjkga6sq7z51msr"; + sha256 = "1yni9c17kl2pi9lqxip07b6g6lyfii1pch5czp183113gk54fwj5"; }; buildInputs = [ mesa_glu ftgl freefont_ttf libjack2 libltc libsndfile libsamplerate lv2 mesa gtk2 cairo pango fftwFloat pkgconfig zita-convolver]; diff --git a/pkgs/applications/audio/zam-plugins/default.nix b/pkgs/applications/audio/zam-plugins/default.nix index b79083ee402c..ecb7d9bceec6 100644 --- a/pkgs/applications/audio/zam-plugins/default.nix +++ b/pkgs/applications/audio/zam-plugins/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { name = "zam-plugins-${version}"; - version = "3.7"; + version = "3.8"; src = fetchgit { url = "https://github.com/zamaudio/zam-plugins.git"; deepClone = true; - rev = "932046905a57f698406318765a60807a1f81257d"; - sha256 = "0zgkmq3jgysrsb6cm6sfbgqpgfpwv8nxlgkqm29zzvb97j56bm7z"; + rev = "830ab2e9dd1db8cf56d12c71057157e5d8e9fd74"; + sha256 = "1hyly5inis59cvh0r7lyi203h8v5jh84ca9jpaljm53cvw6d93px"; }; buildInputs = [ boost libX11 mesa liblo libjack2 ladspaH lv2 pkgconfig rubberband libsndfile ]; diff --git a/pkgs/applications/editors/flpsed/default.nix b/pkgs/applications/editors/flpsed/default.nix index eb1daa3ac3b2..9334b7820faa 100644 --- a/pkgs/applications/editors/flpsed/default.nix +++ b/pkgs/applications/editors/flpsed/default.nix @@ -1,20 +1,27 @@ {stdenv, fetchurl, fltk13, ghostscript}: -stdenv.mkDerivation { - name = "flpsed-0.7.3"; +stdenv.mkDerivation rec { + name = "flpsed-${version}"; + version = "0.7.3"; src = fetchurl { - url = "http://www.ecademix.com/JohannesHofmann/flpsed-0.7.3.tar.gz"; + url = "http://www.flpsed.org/${name}.tar.gz"; sha256 = "0vngqxanykicabhfdznisv82k5ypkxwg0s93ms9ribvhpm8vf2xp"; }; - buildInputs = [ fltk13 ghostscript ]; + buildInputs = [ fltk13 ]; - meta = { + postPatch = '' + # replace the execvp call to ghostscript + sed -e '/exec_gs/ {n; s|"gs"|"${stdenv.lib.getBin ghostscript}/bin/gs"|}' \ + -i src/GsWidget.cxx + ''; + + meta = with stdenv.lib; { description = "WYSIWYG PostScript annotator"; homepage = "http://http://flpsed.org/flpsed.html"; - license = stdenv.lib.licenses.gpl3; - platforms = stdenv.lib.platforms.mesaPlatforms; - maintainers = with stdenv.lib.maintainers; [ fuuzetsu ]; + license = licenses.gpl3; + platforms = platforms.mesaPlatforms; + maintainers = with maintainers; [ fuuzetsu ]; }; } diff --git a/pkgs/applications/editors/idea/default.nix b/pkgs/applications/editors/idea/default.nix index ef5022f58b3f..c5f87d33f732 100644 --- a/pkgs/applications/editors/idea/default.nix +++ b/pkgs/applications/editors/idea/default.nix @@ -136,12 +136,12 @@ in { clion = buildClion rec { name = "clion-${version}"; - version = "2016.3.2"; + version = "2016.3.3"; description = "C/C++ IDE. New. Intelligent. Cross-platform"; license = stdenv.lib.licenses.unfree; src = fetchurl { url = "https://download.jetbrains.com/cpp/CLion-${version}.tar.gz"; - sha256 = "0ygnj3yszgd1si1qgx7m4n7smm583l5pww8xhx8n86mvz7ywdhbn"; + sha256 = "1zziyg0y51lfybflq83qwd94wcypkv4gh0cdkwfybbk4yidpnz05"; }; wmClass = "jetbrains-clion"; }; @@ -208,12 +208,12 @@ in idea-ultimate = buildIdea rec { name = "idea-ultimate-${version}"; - version = "2016.3.3"; + version = "2016.3.4"; description = "Integrated Development Environment (IDE) by Jetbrains, requires paid license"; license = stdenv.lib.licenses.unfree; src = fetchurl { url = "https://download.jetbrains.com/idea/ideaIU-${version}.tar.gz"; - sha256 = "1bwy86rm0mifizmhkm9wxwc4nrrizk2zp4zl5ycxh6zdiad1r1wm"; + sha256 = "1ichjrdmnhyqv9cr73d8kif9l53k3x36i8js8nf9cmkbhdsfckn3"; }; wmClass = "jetbrains-idea"; }; diff --git a/pkgs/applications/editors/kdevelop/default.nix b/pkgs/applications/editors/kdevelop/default.nix deleted file mode 100644 index 938a56518d5f..000000000000 --- a/pkgs/applications/editors/kdevelop/default.nix +++ /dev/null @@ -1,38 +0,0 @@ -{ stdenv, fetchurl, kdevplatform, cmake, pkgconfig, automoc4, shared_mime_info, - kdebase_workspace, gettext, perl, okteta, qjson, kate, konsole, kde_runtime, oxygen_icons }: - -stdenv.mkDerivation rec { - name = "${pname}-${version}"; - version = "4.7.3"; - pname = "kdevelop"; - - src = fetchurl { - url = "mirror://kde/stable/${pname}/${version}/src/${name}.tar.bz2"; - sha256 = "9db388d1c8274da7d168c13db612c7e94ece7815757b945b0aa0371620a06b35"; - }; - - buildInputs = [ kdevplatform kdebase_workspace okteta qjson ]; - - nativeBuildInputs = [ cmake pkgconfig automoc4 shared_mime_info gettext perl ]; - - propagatedUserEnvPkgs = [ kdevplatform kate konsole kde_runtime oxygen_icons ]; - - patches = [ ./gettext.patch ]; - - NIX_CFLAGS_COMPILE = "-I${okteta}/include/KDE"; - - meta = with stdenv.lib; { - maintainers = [ maintainers.urkud ]; - platforms = platforms.linux; - description = "KDE official IDE"; - longDescription = - '' - A free, opensource IDE (Integrated Development Environment) - for MS Windows, Mac OsX, Linux, Solaris and FreeBSD. It is a - feature-full, plugin extendable IDE for C/C++ and other - programing languages. It is based on KDevPlatform, KDE and Qt - libraries and is under development since 1998. - ''; - homepage = https://www.kdevelop.org; - }; -} diff --git a/pkgs/applications/editors/kdevelop/gettext.patch b/pkgs/applications/editors/kdevelop/gettext.patch deleted file mode 100644 index cefbc743fc3e..000000000000 --- a/pkgs/applications/editors/kdevelop/gettext.patch +++ /dev/null @@ -1,8 +0,0 @@ -diff -urN kdevelop-4.7.3.orig/po/CMakeLists.txt kdevelop-4.7.3/po/CMakeLists.txt ---- kdevelop-4.7.3.orig/po/CMakeLists.txt 2016-03-04 23:29:09.411886565 +0100 -+++ kdevelop-4.7.3/po/CMakeLists.txt 2016-03-04 23:28:35.108451713 +0100 -@@ -1,3 +1,4 @@ -+cmake_policy(SET CMP0002 OLD) - find_package(Gettext REQUIRED) - if (NOT GETTEXT_MSGMERGE_EXECUTABLE) - MESSAGE(FATAL_ERROR "Please install msgmerge binary") diff --git a/pkgs/applications/editors/kile/default.nix b/pkgs/applications/editors/kile/default.nix index 7f7b22dfa134..a5914c92e8f9 100644 --- a/pkgs/applications/editors/kile/default.nix +++ b/pkgs/applications/editors/kile/default.nix @@ -1,28 +1,68 @@ -{ stdenv, fetchurl, automoc4, cmake, gettext, perl, pkgconfig -, shared_mime_info, kdelibs +{ kdeDerivation +, lib +, fetchgit +, extra-cmake-modules +, kdoctools +, kdeWrapper +, qtscript +, kconfig +, kcrash +, kdbusaddons +, kdelibs4support +, kguiaddons +, kiconthemes +, kinit +, khtml +, konsole +, kparts +, ktexteditor +, kwindowsystem +, poppler }: -stdenv.mkDerivation rec { - name = "kile-2.1.3"; +let + unwrapped = + kdeDerivation rec { + name = "kile-${version}"; + version = "2017-02-09"; - src = fetchurl { - url = "mirror://sourceforge/kile/${name}.tar.bz2"; - sha256 = "18nfi37s46v9xav7vyki3phasddgcy4m7nywzxis198vr97yqqx0"; - }; + src = fetchgit { + url = git://anongit.kde.org/kile.git; + rev = "f77f6e627487c152f111e307ad6dc71699ade746"; + sha256 = "0wpqaix9ssa28cm7qqjj0zfrscjgk8s3kmi5b4kk8h583gsrikib"; - nativeBuildInputs = [ - automoc4 cmake gettext perl pkgconfig shared_mime_info - ]; - buildInputs = [ kdelibs ]; + }; - # for KDE 4.7 the nl translations fail since kile-2.1.2 - preConfigure = "rm -r translations/nl"; + nativeBuildInputs = [ extra-cmake-modules kdoctools ]; - meta = { - description = "An integrated LaTeX editor for KDE"; - homepage = http://kile.sourceforge.net; - maintainers = [ stdenv.lib.maintainers.urkud ]; - license = stdenv.lib.licenses.gpl2Plus; - inherit (kdelibs.meta) platforms; - }; + buildInputs = [ + kconfig + kcrash + kdbusaddons + kdelibs4support + kdoctools + kguiaddons + kiconthemes + kinit + khtml + kparts + ktexteditor + kwindowsystem + poppler + qtscript + ]; + + meta = { + description = "Kile is a user friendly TeX/LaTeX authoring tool for the KDE desktop environment"; + homepage = https://www.kde.org/applications/office/kile/; + maintainers = with lib.maintainers; [ fridh ]; + license = lib.licenses.gpl2Plus; + }; + }; +in +kdeWrapper +{ + inherit unwrapped; + targets = [ "bin/kile" ]; + paths = [ konsole.unwrapped ]; } diff --git a/pkgs/applications/editors/kile/frameworks.nix b/pkgs/applications/editors/kile/frameworks.nix deleted file mode 100644 index ad3300b9221f..000000000000 --- a/pkgs/applications/editors/kile/frameworks.nix +++ /dev/null @@ -1,68 +0,0 @@ -{ kdeDerivation -, lib -, fetchgit -, ecm -, kdoctools -, kdeWrapper -, qtscript -, kconfig -, kcrash -, kdbusaddons -, kdelibs4support -, kguiaddons -, kiconthemes -, kinit -, khtml -, konsole -, kparts -, ktexteditor -, kwindowsystem -, poppler -}: - -let - unwrapped = - kdeDerivation rec { - name = "kile-${version}"; - version = "2017-02-09"; - - src = fetchgit { - url = git://anongit.kde.org/kile.git; - rev = "f77f6e627487c152f111e307ad6dc71699ade746"; - sha256 = "0wpqaix9ssa28cm7qqjj0zfrscjgk8s3kmi5b4kk8h583gsrikib"; - - }; - - nativeBuildInputs = [ ecm kdoctools ]; - - buildInputs = [ - kconfig - kcrash - kdbusaddons - kdelibs4support - kdoctools - kguiaddons - kiconthemes - kinit - khtml - kparts - ktexteditor - kwindowsystem - poppler - qtscript - ]; - - meta = { - description = "Kile is a user friendly TeX/LaTeX authoring tool for the KDE desktop environment"; - homepage = https://www.kde.org/applications/office/kile/; - maintainers = with lib.maintainers; [ fridh ]; - license = lib.licenses.gpl2Plus; - }; - }; -in -kdeWrapper -{ - inherit unwrapped; - targets = [ "bin/kile" ]; - paths = [ konsole.unwrapped ]; -} diff --git a/pkgs/applications/graphics/digikam/5.nix b/pkgs/applications/graphics/digikam/5.nix deleted file mode 100644 index a9d7d357ad71..000000000000 --- a/pkgs/applications/graphics/digikam/5.nix +++ /dev/null @@ -1,122 +0,0 @@ -{ stdenv, fetchurl, cmake, ecm, makeQtWrapper - -# For `digitaglinktree` -, perl, sqlite - -, qtbase -, qtxmlpatterns -, qtsvg -, qtwebkit - -, kconfigwidgets -, kcoreaddons -, kdoctools -, kfilemetadata -, knotifications -, knotifyconfig -, ktextwidgets -, kwidgetsaddons -, kxmlgui - -, bison -, boost -, eigen -, exiv2 -, flex -, jasper -, lcms2 -, lensfun -, libgphoto2 -, libkipi -, liblqr1 -, libusb1 -, marble -, mysql -, opencv -, threadweaver - -# For panorama and focus stacking -, enblend-enfuse -, hugin -, gnumake - -, oxygen -}: - -stdenv.mkDerivation rec { - name = "digikam-${version}"; - version = "5.4.0"; - - src = fetchurl { - url = "http://download.kde.org/stable/digikam/${name}.tar.xz"; - sha256 = "0dgsgji14l5zvxny36hrfsp889fsfrsbbn9bg57m18404xp903kg"; - }; - - nativeBuildInputs = [ cmake ecm makeQtWrapper ]; - - patches = [ ./0001-Disable-fno-operator-names.patch ]; - - buildInputs = [ - qtbase - qtxmlpatterns - qtsvg - qtwebkit - - kconfigwidgets - kcoreaddons - kdoctools - kfilemetadata - knotifications - knotifyconfig - ktextwidgets - kwidgetsaddons - kxmlgui - - bison - boost - eigen - exiv2 - flex - jasper - lcms2 - lensfun - libgphoto2 - libkipi - liblqr1 - libusb1 - marble.unwrapped - mysql - opencv - threadweaver - - oxygen - ]; - - enableParallelBuilding = true; - - cmakeFlags = [ - "-DLIBUSB_LIBRARIES=${libusb1.out}/lib" - "-DLIBUSB_INCLUDE_DIR=${libusb1.dev}/include/libusb-1.0" - "-DENABLE_MYSQLSUPPORT=1" - "-DENABLE_INTERNALMYSQL=1" - ]; - - fixupPhase = '' - substituteInPlace $out/bin/digitaglinktree \ - --replace "/usr/bin/perl" "${perl}/bin/perl" \ - --replace "/usr/bin/sqlite3" "${sqlite}/bin/sqlite3" - - wrapQtProgram $out/bin/digikam \ - --prefix PATH : "${gnumake}/bin:${hugin}/bin:${enblend-enfuse}/bin" - - wrapQtProgram $out/bin/showfoto - ''; - - meta = { - description = "Photo Management Program"; - license = stdenv.lib.licenses.gpl2; - homepage = http://www.digikam.org; - maintainers = with stdenv.lib.maintainers; [ the-kenny ]; - platforms = stdenv.lib.platforms.linux; - }; -} diff --git a/pkgs/applications/graphics/digikam/default.nix b/pkgs/applications/graphics/digikam/default.nix index 9a9c0ff1d7f7..00c0da7a78e3 100644 --- a/pkgs/applications/graphics/digikam/default.nix +++ b/pkgs/applications/graphics/digikam/default.nix @@ -1,235 +1,122 @@ -{ stdenv, fetchurl, fetchpatch, automoc4, boost, shared_desktop_ontologies -, cmake, eigen, lcms, gettext, jasper, kdelibs, kdepimlibs, lensfun -, libgphoto2, libjpeg, libkdcraw, libkexiv2, libkipi, libpgf, libtiff -, libusb1, liblqr1, marble, mysql, opencv, perl, phonon, pkgconfig -, qca2, qimageblitz, qjson, qt4, soprano - -# Optional build time dependencies -, baloo, doxygen, kfilemetadata +{ stdenv, fetchurl, cmake, extra-cmake-modules, makeQtWrapper + +# For `digitaglinktree` +, perl, sqlite + +, qtbase +, qtxmlpatterns +, qtsvg +, qtwebkit + +, kconfigwidgets +, kcoreaddons +, kdoctools +, kfilemetadata +, knotifications +, knotifyconfig +, ktextwidgets +, kwidgetsaddons +, kxmlgui + +, bison +, boost +, eigen +, exiv2 +, flex +, jasper , lcms2 -, kfaceSupport ? true, libkface ? null -, kgeomapSupport ? true, libkgeomap ? null -, libxslt - -# Plugins optional build time dependencies -, gdk_pixbuf, imagemagick -, libgpod, libksane, libkvkontakte -, qt_gstreamer1 /*qt_soap, <https://github.com/commontk/QtSOAP> herqq <http://www.herqq.org> -> is missing its av part.*/ - /*qt_koauth <http://gitorious.org/kqoauth>*/ - -# Supplementary packages required only by the wrapper. -, bash, kde_runtime, kde_baseapps, makeWrapper, oxygen_icons -, phonon-backend-vlc /*phonon-backend-gstreamer,*/ -, ffmpegthumbs /*mplayerthumbs*/ -, runCommand, shared_mime_info, writeScriptBin +, lensfun +, libgphoto2 +, libkipi +, liblqr1 +, libusb1 +, marble +, mysql +, opencv +, threadweaver + +# For panorama and focus stacking +, enblend-enfuse +, hugin +, gnumake + +, oxygen }: -let - version = "4.12.0"; - pName = "digikam-${version}"; - - build = stdenv.mkDerivation rec { - name = "digikam-build-${version}"; - - src = fetchurl { - url = "http://download.kde.org/stable/digikam/${pName}.tar.bz2"; - sha256 = "081ldsaf3frf5khznjd3sxkjmi4dyp6w6nqnc2a0agkk0kxkl10m"; - }; - - patches = [ - (fetchpatch { - # Fix compilation against Lensfun 0.3.2 - url = "http://cgit.kde.org/digikam.git/patch/?id=0f159981176faa6da701f112bfe557b79804d468"; - sha256 = "1c8bg7s84vg4v620gbs16cjcbpml749018gy5dpvfacx5vl24wza"; - }) - ]; - - patchFlags = ["-p1" "-dcore"]; - - nativeBuildInputs = [ - automoc4 cmake gettext perl pkgconfig - ] ++ [ - # Optional - doxygen - ]; - - buildInputs = [ - boost eigen jasper kdelibs kdepimlibs lcms lensfun - libgphoto2 libjpeg libkdcraw libkexiv2 libkipi liblqr1 libpgf - libtiff marble mysql.lib opencv phonon qca2 qimageblitz qjson qt4 - shared_desktop_ontologies soprano ] - # Optional build time dependencies - ++ [ - baloo - kfilemetadata - lcms2 ] - ++ stdenv.lib.optional (kfaceSupport && null != libkface) [ libkface ] - ++ stdenv.lib.optional (kgeomapSupport && null != libkgeomap) [ libkgeomap ] ++ - [ libxslt ] - # Plugins optional build time dependencies - ++ [ - gdk_pixbuf imagemagick libgpod libksane - libkvkontakte - qt_gstreamer1 ]; - - # Make digikam find some FindXXXX.cmake - KDEDIRS="${marble}:${qjson}"; - - # Find kdepimlibs's upper case headers under `include/KDE`. - NIX_CFLAGS_COMPILE = "-I${kdepimlibs}/include/KDE"; - - # Help digiKam find libusb, otherwise gphoto2 support is disabled - cmakeFlags = [ - "-DLIBUSB_LIBRARIES=${libusb1.out}/lib" - "-DLIBUSB_INCLUDE_DIR=${libusb1.dev}/include/libusb-1.0" - "-DENABLE_BALOOSUPPORT=ON" - "-DENABLE_KDEPIMLIBSSUPPORT=ON" - "-DENABLE_LCMS2=ON" ] - ++ stdenv.lib.optional (kfaceSupport && null == libkface) [ "-DDIGIKAMSC_COMPILE_LIBKFACE=ON" ] - ++ stdenv.lib.optional (kgeomapSupport && null == libkgeomap) [ "-DDIGIKAMSC_COMPILE_LIBKGEOMAP=ON" ]; - - enableParallelBuilding = true; - - meta = { - description = "Photo Management Program"; - license = stdenv.lib.licenses.gpl2; - homepage = http://www.digikam.org; - maintainers = with stdenv.lib.maintainers; [ goibhniu viric urkud ]; - inherit (kdelibs.meta) platforms; - }; - }; +stdenv.mkDerivation rec { + name = "digikam-${version}"; + version = "5.4.0"; + src = fetchurl { + url = "http://download.kde.org/stable/digikam/${name}.tar.xz"; + sha256 = "0dgsgji14l5zvxny36hrfsp889fsfrsbbn9bg57m18404xp903kg"; + }; - kdePkgs = [ - build # digikam's own build - kdelibs kdepimlibs kde_runtime kde_baseapps libkdcraw oxygen_icons - /*phonon-backend-gstreamer*/ phonon-backend-vlc - ffmpegthumbs /*mplayerthumbs*/ shared_mime_info ] - # Optional build time dependencies - ++ [ - - baloo kfilemetadata ] - ++ stdenv.lib.optional (kfaceSupport && null != libkface) [ libkface ] - ++ stdenv.lib.optional (kgeomapSupport && null != libkgeomap) [ libkgeomap ] - ++ [ - libkipi ] - # Plugins optional build time dependencies - ++ [ - libksane libkvkontakte + nativeBuildInputs = [ cmake extra-cmake-modules makeQtWrapper ]; + + patches = [ ./0001-Disable-fno-operator-names.patch ]; + + buildInputs = [ + qtbase + qtxmlpatterns + qtsvg + qtwebkit + + kconfigwidgets + kcoreaddons + kdoctools + kfilemetadata + knotifications + knotifyconfig + ktextwidgets + kwidgetsaddons + kxmlgui + + bison + boost + eigen + exiv2 + flex + jasper + lcms2 + lensfun + libgphoto2 + libkipi + liblqr1 + libusb1 + marble.unwrapped + mysql + opencv + threadweaver + + oxygen ]; + enableParallelBuilding = true; - # TODO: It should be the responsability of these packages to add themselves to `KDEDIRS`. See - # <https://github.com/ttuegel/nixpkgs/commit/a0efeacc0ef2cf63bbb768bfb172a483307d080b> for - # a practical example. - # IMPORTANT: Note that using `XDG_DATA_DIRS` here instead of `KDEDIRS` won't work properly. - KDEDIRS = with stdenv.lib; concatStrings (intersperse ":" (map (x: "${x}") kdePkgs)); - - sycocaDirRelPath = "var/lib/kdesycoca"; - sycocaFileRelPath = "${sycocaDirRelPath}/${pName}.sycoca"; - - sycoca = runCommand "${pName}" { - - name = "digikam-sycoca-${version}"; - - nativeBuildInputs = [ kdelibs ]; - - dontPatchELF = true; - dontStrip = true; + cmakeFlags = [ + "-DLIBUSB_LIBRARIES=${libusb1.out}/lib" + "-DLIBUSB_INCLUDE_DIR=${libusb1.dev}/include/libusb-1.0" + "-DENABLE_MYSQLSUPPORT=1" + "-DENABLE_INTERNALMYSQL=1" + ]; - } '' - # Make sure kbuildsycoca4 does not attempt to write to user home directory. - export HOME=$PWD + fixupPhase = '' + substituteInPlace $out/bin/digitaglinktree \ + --replace "/usr/bin/perl" "${perl}/bin/perl" \ + --replace "/usr/bin/sqlite3" "${sqlite}/bin/sqlite3" - export KDESYCOCA="$out/${sycocaFileRelPath}" + wrapQtProgram $out/bin/digikam \ + --prefix PATH : "${gnumake}/bin:${hugin}/bin:${enblend-enfuse}/bin" - mkdir -p $out/${sycocaDirRelPath} - export XDG_DATA_DIRS="" - export KDEDIRS="${KDEDIRS}" - kbuildsycoca4 --noincremental --nosignal + wrapQtProgram $out/bin/showfoto ''; - - replaceExeListWithWrapped = - let f = exeName: '' - rm -f "$out/bin/${exeName}" - makeWrapper "${build}/bin/${exeName}" "$out/bin/${exeName}" \ - --set XDG_DATA_DIRS "" \ - --set KDEDIRS "${KDEDIRS}" \ - --set KDESYCOCA "${sycoca}/${sycocaFileRelPath}" - ''; - in - with stdenv.lib; exeNameList: concatStrings (intersperse "\n" (map f exeNameList)); - -in - - -with stdenv.lib; - -/* - Final derivation - ---------------- - - - Create symlinks to our original build derivation items. - - Wrap specific executables so that they know of the appropriate - sycoca database, `KDEDIRS` to use and block any interference - from `XDG_DATA_DIRS` (only `dnginfo` is not wrapped). -*/ -runCommand "${pName}" { - inherit build; - inherit sycoca; - - nativeBuildInputs = [ makeWrapper ]; - - buildInputs = kdePkgs; - - dontPatchELF = true; - dontStrip = true; - meta = { description = "Photo Management Program"; license = stdenv.lib.licenses.gpl2; homepage = http://www.digikam.org; - maintainers = with stdenv.lib.maintainers; [ /*jraygauthier*/ ]; - inherit (kdelibs.meta) platforms; - broken = true; + maintainers = with stdenv.lib.maintainers; [ the-kenny ]; + platforms = stdenv.lib.platforms.linux; }; - -} '' - pushd $build > /dev/null - for d in `find . -maxdepth 1 -name "*" -printf "%f\n" | tail -n+2`; do - mkdir -p $out/$d - for f in `find $d -maxdepth 1 -name "*" -printf "%f\n" | tail -n+2`; do - ln -s "$build/$d/$f" "$out/$d/$f" - done - done - popd > /dev/null - - ${replaceExeListWithWrapped [ "cleanup_digikamdb" "digitaglinktree" "digikam" "dngconverter" - "expoblending" "photolayoutseditor" "scangui" "showfoto" ]} -'' - -/* - -TODO ----- - -### Useful ### - - - Per lib `KDELIBS` environment variable export. See above in-code TODO comment. - - Missing optional `qt_soap` or `herqq` (av + normal package) dependencies. Those are not - yet (or not fully) packaged in nix. Mainly required for upnp export. - - Possibility to use the `phonon-backend-gstreamer` with its own user specified set of backend. - - Allow user to disable optional features or dependencies reacting properly. - - Compile `kipiplugins` as a separate package (so that it can be used by other kde packages - and so that this package's build time is reduced). - -### Not so useful ### - - - Missing optional `qt_koauth` (not packaged in nix). - - Missing optional `libmediawiki` (not packaged in nix).. - - For some reason the cmake build does not detect `libkvkontakte`. Fix this. - - Possibility to use `mplayerthumbs` thumbnail creator backend. In digikam dev docs, - it is however suggested to use `ffmpegthumbs`. Maybe we should stick to it. - -*/ +} diff --git a/pkgs/applications/graphics/kgraphviewer/default.nix b/pkgs/applications/graphics/kgraphviewer/default.nix index 6eb57c3dd5f1..ea0fe51cc85a 100644 --- a/pkgs/applications/graphics/kgraphviewer/default.nix +++ b/pkgs/applications/graphics/kgraphviewer/default.nix @@ -1,5 +1,5 @@ { stdenv, fetchurl, automoc4, cmake, gettext, perl, pkgconfig -, kdelibs, boost, graphviz +, kdelibs4, boost, graphviz }: stdenv.mkDerivation rec { @@ -11,7 +11,7 @@ stdenv.mkDerivation rec { sha256 = "13zhjs57xavzrj4nrlqs35n35ihvzij7hgbszf5fhlp2a4d4rrqs"; }; - buildInputs = [ kdelibs boost graphviz ]; + buildInputs = [ kdelibs4 boost graphviz ]; nativeBuildInputs = [ automoc4 cmake gettext perl pkgconfig ]; meta = with stdenv.lib; { diff --git a/pkgs/applications/graphics/kipi-plugins/5.x.nix b/pkgs/applications/graphics/kipi-plugins/5.x.nix deleted file mode 100644 index 2f6cc8e4ece0..000000000000 --- a/pkgs/applications/graphics/kipi-plugins/5.x.nix +++ /dev/null @@ -1,34 +0,0 @@ -{ - stdenv, fetchurl, - ecm, - karchive, kconfig, ki18n, kiconthemes, kio, kservice, kwindowsystem, kxmlgui, - libkipi, qtbase, qtsvg, qtxmlpatterns -}: - -stdenv.mkDerivation rec { - name = "kipi-plugins-${version}"; - version = "5.2.0"; - - src = fetchurl { - url = "http://download.kde.org/stable/digikam/digikam-${version}.tar.xz"; - sha256 = "0q4j7iv20cxgfsr14qwzx05wbp2zkgc7cg2pi7ibcnwba70ky96g"; - }; - - prePatch = '' - cd extra/kipi-plugins - ''; - - nativeBuildInputs = [ ecm ]; - buildInputs = [ - karchive kconfig ki18n kiconthemes kio kservice kwindowsystem kxmlgui libkipi - qtbase qtsvg qtxmlpatterns - ]; - - meta = { - description = "Plugins for KDE-based image applications"; - license = stdenv.lib.licenses.gpl2; - homepage = http://www.digikam.org; - maintainers = with stdenv.lib.maintainers; [ ttuegel ]; - platforms = stdenv.lib.platforms.linux; - }; -} diff --git a/pkgs/applications/graphics/kipi-plugins/default.nix b/pkgs/applications/graphics/kipi-plugins/default.nix index b69105fba7c8..d27fdb8b53be 100644 --- a/pkgs/applications/graphics/kipi-plugins/default.nix +++ b/pkgs/applications/graphics/kipi-plugins/default.nix @@ -1,30 +1,34 @@ -{ stdenv, fetchurl, kdelibs, qimageblitz, qca2, kdepimlibs, libxml2, libxslt -, gettext, opencv, libgpod, gdk_pixbuf , qjson, pkgconfig -, cmake, automoc4 -, kdegraphics, libkexiv2 ? kdegraphics, libkdcraw ? kdegraphics -, libkipi ? kdegraphics, libksane ? kdegraphics }: +{ + stdenv, fetchurl, + extra-cmake-modules, + karchive, kconfig, ki18n, kiconthemes, kio, kservice, kwindowsystem, kxmlgui, + libkipi, qtbase, qtsvg, qtxmlpatterns +}: stdenv.mkDerivation rec { - name = "kipi-plugins-1.9.0"; + name = "kipi-plugins-${version}"; + version = "5.2.0"; src = fetchurl { - url = "mirror://sourceforge/kipi/${name}.tar.bz2"; - sha256 = "0k4k9v1rj7129n0s0i5pvv4rabx0prxqs6sca642fj95cxc6c96m"; + url = "http://download.kde.org/stable/digikam/digikam-${version}.tar.xz"; + sha256 = "0q4j7iv20cxgfsr14qwzx05wbp2zkgc7cg2pi7ibcnwba70ky96g"; }; - buildInputs = - [ kdelibs libkexiv2 libkdcraw libkipi qimageblitz qca2 kdepimlibs libxml2 - libksane libxslt gettext opencv libgpod gdk_pixbuf qjson - ]; + prePatch = '' + cd extra/kipi-plugins + ''; - nativeBuildInputs = [ pkgconfig cmake automoc4 ]; + nativeBuildInputs = [ extra-cmake-modules ]; + buildInputs = [ + karchive kconfig ki18n kiconthemes kio kservice kwindowsystem kxmlgui libkipi + qtbase qtsvg qtxmlpatterns + ]; meta = { - description = "Photo Management Program"; - license = "GPL"; - homepage = http://www.kipi-plugins.org; - inherit (kdelibs.meta) platforms; - maintainers = with stdenv.lib.maintainers; [ viric urkud ]; - broken = true; # it should be built from digikam sources, perhaps together + description = "Plugins for KDE-based image applications"; + license = stdenv.lib.licenses.gpl2; + homepage = http://www.digikam.org; + maintainers = with stdenv.lib.maintainers; [ ttuegel ]; + platforms = stdenv.lib.platforms.linux; }; } diff --git a/pkgs/applications/graphics/kuickshow/default.nix b/pkgs/applications/graphics/kuickshow/default.nix deleted file mode 100644 index cfecd19df46d..000000000000 --- a/pkgs/applications/graphics/kuickshow/default.nix +++ /dev/null @@ -1,14 +0,0 @@ -{ stdenv, fetchurl, automoc4, kdelibs, imlib, cmake, pkgconfig, gettext }: - -stdenv.mkDerivation rec { - name = "kuickshow-0.9.1"; - - src = fetchurl { - url = "http://hosti.leonde.de/~gis/${name}.tar.bz2"; - sha256 = "0l488a6p0ligbhv6p1lnx5k2d00x9bkkvms30winifa8rmisa9wl"; - }; - - buildInputs = [ kdelibs imlib ]; - - nativeBuildInputs = [ automoc4 cmake gettext pkgconfig ]; -} diff --git a/pkgs/desktops/kde-5/applications/akonadi-contacts.nix b/pkgs/applications/kde/akonadi-contacts.nix index 7acfa3a230b3..830c9e6899ea 100644 --- a/pkgs/desktops/kde-5/applications/akonadi-contacts.nix +++ b/pkgs/applications/kde/akonadi-contacts.nix @@ -1,6 +1,6 @@ { kdeApp, lib, - ecm, + extra-cmake-modules, akonadi-mime, grantlee, kcontacts, kio, kitemmodels, kmime, qtwebengine, akonadi }: @@ -11,7 +11,7 @@ kdeApp { license = with lib.licenses; [ gpl2 lgpl21 ]; maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; buildInputs = [ akonadi-mime grantlee kcontacts kio kitemmodels kmime qtwebengine ]; diff --git a/pkgs/desktops/kde-5/applications/akonadi-mime.nix b/pkgs/applications/kde/akonadi-mime.nix index 26e1559c779e..ba4b4b50242c 100644 --- a/pkgs/desktops/kde-5/applications/akonadi-mime.nix +++ b/pkgs/applications/kde/akonadi-mime.nix @@ -1,6 +1,6 @@ { kdeApp, lib, - ecm, + extra-cmake-modules, akonadi, kdbusaddons, kio, kitemmodels, kmime }: @@ -10,6 +10,6 @@ kdeApp { license = with lib.licenses; [ gpl2 lgpl21 ]; maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; buildInputs = [ akonadi kdbusaddons kio kitemmodels kmime ]; } diff --git a/pkgs/desktops/kde-5/applications/akonadi.nix b/pkgs/applications/kde/akonadi.nix index 03483e5ec0d1..284ed60a9cbd 100644 --- a/pkgs/desktops/kde-5/applications/akonadi.nix +++ b/pkgs/applications/kde/akonadi.nix @@ -1,6 +1,6 @@ { kdeApp, lib, - ecm, + extra-cmake-modules, kcompletion, kconfigwidgets, kdbusaddons, kdesignerplugin, kiconthemes, kio, boost, kitemmodels @@ -12,7 +12,7 @@ kdeApp { license = [ lib.licenses.lgpl21 ]; maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; buildInputs = [ kcompletion kconfigwidgets kdbusaddons kdesignerplugin kiconthemes kio ]; diff --git a/pkgs/desktops/kde-5/applications/ark/default.nix b/pkgs/applications/kde/ark/default.nix index 6b471614f5a6..e1e25b2acf24 100644 --- a/pkgs/desktops/kde-5/applications/ark/default.nix +++ b/pkgs/applications/kde/ark/default.nix @@ -1,13 +1,16 @@ { - kdeApp, lib, kdeWrapper, + kdeApp, lib, config, kdeWrapper, - ecm, kdoctools, makeWrapper, + extra-cmake-modules, kdoctools, makeWrapper, karchive, kconfig, kcrash, kdbusaddons, ki18n, kiconthemes, khtml, kio, kservice, kpty, kwidgetsaddons, libarchive, # Archive tools - p7zip, unrar, unzipNLS, zip + p7zip, unzipNLS, zip, + + # Unfree tools + unfreeEnableUnrar ? false, unrar, }: let @@ -15,7 +18,7 @@ let kdeApp { name = "ark"; nativeBuildInputs = [ - ecm kdoctools makeWrapper + extra-cmake-modules kdoctools makeWrapper ]; propagatedBuildInputs = [ khtml ki18n kio karchive kconfig kcrash kdbusaddons kiconthemes kservice @@ -23,15 +26,16 @@ let ]; postInstall = let - PATH = lib.makeBinPath [ - p7zip unrar unzipNLS zip - ]; + PATH = + lib.makeBinPath + ([ p7zip unzipNLS zip ] ++ lib.optional unfreeEnableUnrar unrar); in '' wrapProgram "$out/bin/ark" \ --prefix PATH : "${PATH}" ''; meta = { - license = with lib.licenses; [ gpl2 lgpl3 ]; + license = with lib.licenses; + [ gpl2 lgpl3 ] ++ lib.optional unfreeEnableUnrar unfree; maintainers = [ lib.maintainers.ttuegel ]; }; }; diff --git a/pkgs/desktops/kde-5/applications/baloo-widgets.nix b/pkgs/applications/kde/baloo-widgets.nix index f6f3a7ce14ea..bb6803057096 100644 --- a/pkgs/desktops/kde-5/applications/baloo-widgets.nix +++ b/pkgs/applications/kde/baloo-widgets.nix @@ -1,6 +1,6 @@ { kdeApp, lib, - ecm, kdoctools, + extra-cmake-modules, kdoctools, baloo, kconfig, kdelibs4support, kfilemetadata, ki18n, kio, kservice }: @@ -10,7 +10,7 @@ kdeApp { license = [ lib.licenses.lgpl21 ]; maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm kdoctools ]; + nativeBuildInputs = [ extra-cmake-modules kdoctools ]; propagatedBuildInputs = [ baloo kconfig kdelibs4support kfilemetadata ki18n kio kservice ]; diff --git a/pkgs/desktops/kde-5/applications/kde-app.nix b/pkgs/applications/kde/build-support/application.nix index 92fdb439330d..92fdb439330d 100644 --- a/pkgs/desktops/kde-5/applications/kde-app.nix +++ b/pkgs/applications/kde/build-support/application.nix diff --git a/pkgs/applications/kde/default.nix b/pkgs/applications/kde/default.nix new file mode 100644 index 000000000000..fff0df35d052 --- /dev/null +++ b/pkgs/applications/kde/default.nix @@ -0,0 +1,93 @@ +/* + +# New packages + +READ THIS FIRST + +This module is for official packages in the KDE Applications Bundle. All +available packages are listed in `./srcs.nix`, although some are not yet +packaged in Nixpkgs (see below). + +IF YOUR PACKAGE IS NOT LISTED IN `./srcs.nix`, IT DOES NOT GO HERE. + +Many of the packages released upstream are not yet built in Nixpkgs due to lack +of demand. To add a Nixpkgs build for an upstream package, copy one of the +existing packages here and modify it as necessary. A simple example package that +still shows most of the available features is in `./gwenview.nix`. + +# Updates + +1. Update the URL in `./fetch.sh`. +2. Run `./maintainers/scripts/fetch-kde-qt.sh pkgs/desktops/kde-5/applications` + from the top of the Nixpkgs tree. +3. Use `nox-review wip` to check that everything builds. +4. Commit the changes and open a pull request. + +*/ + +{ + stdenv, lib, libsForQt5, fetchurl, recurseIntoAttrs, + kdeDerivation, plasma5, + attica, phonon, + debug ? false, +}: + +let + mirror = "mirror://kde"; + srcs = import ./srcs.nix { inherit fetchurl mirror; }; +in + +let + + packages = self: with self; + let + callPackage = self.newScope { + kdeApp = import ./build-support/application.nix { + inherit lib kdeDerivation; + inherit debug srcs; + }; + }; + in { + kdelibs = callPackage ./kdelibs { inherit attica phonon; }; + akonadi = callPackage ./akonadi.nix {}; + akonadi-contacts = callPackage ./akonadi-contacts.nix {}; + akonadi-mime = callPackage ./akonadi-mime.nix {}; + ark = callPackage ./ark/default.nix {}; + baloo-widgets = callPackage ./baloo-widgets.nix {}; + dolphin = callPackage ./dolphin.nix {}; + dolphin-plugins = callPackage ./dolphin-plugins.nix {}; + ffmpegthumbs = callPackage ./ffmpegthumbs.nix { }; + filelight = callPackage ./filelight.nix {}; + gwenview = callPackage ./gwenview.nix {}; + kate = callPackage ./kate.nix {}; + kdenlive = callPackage ./kdenlive.nix {}; + kcalc = callPackage ./kcalc.nix {}; + kcolorchooser = callPackage ./kcolorchooser.nix {}; + kcontacts = callPackage ./kcontacts.nix {}; + kdegraphics-mobipocket = callPackage ./kdegraphics-mobipocket.nix {}; + kdegraphics-thumbnailers = callPackage ./kdegraphics-thumbnailers.nix {}; + kdenetwork-filesharing = callPackage ./kdenetwork-filesharing.nix {}; + kdf = callPackage ./kdf.nix {}; + kgpg = callPackage ./kgpg.nix {}; + khelpcenter = callPackage ./khelpcenter.nix {}; + kig = callPackage ./kig.nix {}; + kio-extras = callPackage ./kio-extras.nix {}; + kmime = callPackage ./kmime.nix {}; + kmix = callPackage ./kmix.nix {}; + kompare = callPackage ./kompare.nix {}; + konsole = callPackage ./konsole.nix {}; + kwalletmanager = callPackage ./kwalletmanager.nix {}; + libkdcraw = callPackage ./libkdcraw.nix {}; + libkexiv2 = callPackage ./libkexiv2.nix {}; + libkipi = callPackage ./libkipi.nix {}; + libkomparediff2 = callPackage ./libkomparediff2.nix {}; + marble = callPackage ./marble.nix {}; + okteta = callPackage ./okteta.nix {}; + okular = callPackage ./okular.nix {}; + print-manager = callPackage ./print-manager.nix {}; + spectacle = callPackage ./spectacle.nix {}; + + l10n = recurseIntoAttrs (import ./l10n.nix { inherit callPackage lib recurseIntoAttrs; }); + }; + +in lib.makeScope libsForQt5.newScope packages diff --git a/pkgs/desktops/kde-5/applications/dolphin-plugins.nix b/pkgs/applications/kde/dolphin-plugins.nix index e9932adc5dca..7f436c7a55a9 100644 --- a/pkgs/desktops/kde-5/applications/dolphin-plugins.nix +++ b/pkgs/applications/kde/dolphin-plugins.nix @@ -1,6 +1,6 @@ { kdeApp, lib, - ecm, kdoctools, + extra-cmake-modules, kdoctools, dolphin, kdelibs4support, ki18n, kio, kxmlgui }: @@ -10,7 +10,7 @@ kdeApp { license = [ lib.licenses.gpl2 ]; maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm kdoctools ]; + nativeBuildInputs = [ extra-cmake-modules kdoctools ]; propagatedBuildInputs = [ dolphin.unwrapped kdelibs4support ki18n kio kxmlgui ]; diff --git a/pkgs/desktops/kde-5/applications/dolphin.nix b/pkgs/applications/kde/dolphin.nix index 9be40e9439b6..6515c230c284 100644 --- a/pkgs/desktops/kde-5/applications/dolphin.nix +++ b/pkgs/applications/kde/dolphin.nix @@ -1,6 +1,6 @@ { kdeApp, lib, kdeWrapper, - ecm, kdoctools, makeQtWrapper, + extra-cmake-modules, kdoctools, makeQtWrapper, baloo, baloo-widgets, dolphin-plugins, kactivities, kbookmarks, kcmutils, kcompletion, kconfig, kcoreaddons, kdelibs4support, kdbusaddons, kfilemetadata, ki18n, kiconthemes, kinit, kio, knewstuff, knotifications, @@ -15,7 +15,7 @@ let license = with lib.licenses; [ gpl2 fdl12 ]; maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm kdoctools makeQtWrapper ]; + nativeBuildInputs = [ extra-cmake-modules kdoctools makeQtWrapper ]; propagatedBuildInputs = [ baloo baloo-widgets kactivities kbookmarks kcmutils kcompletion kconfig kcoreaddons kdelibs4support kdbusaddons kfilemetadata ki18n kiconthemes diff --git a/pkgs/desktops/kde-5/applications/fetch.sh b/pkgs/applications/kde/fetch.sh index 607a16eb45b1..607a16eb45b1 100644 --- a/pkgs/desktops/kde-5/applications/fetch.sh +++ b/pkgs/applications/kde/fetch.sh diff --git a/pkgs/desktops/kde-5/applications/ffmpegthumbs.nix b/pkgs/applications/kde/ffmpegthumbs.nix index c063b1e6035b..5dde6d8a64ea 100644 --- a/pkgs/desktops/kde-5/applications/ffmpegthumbs.nix +++ b/pkgs/applications/kde/ffmpegthumbs.nix @@ -1,6 +1,6 @@ { kdeApp, lib, - ecm, + extra-cmake-modules, ffmpeg, kio }: @@ -10,6 +10,6 @@ kdeApp { license = with lib.licenses; [ gpl2 bsd3 ]; maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; propagatedBuildInputs = [ ffmpeg kio ]; } diff --git a/pkgs/desktops/kde-5/applications/filelight.nix b/pkgs/applications/kde/filelight.nix index e3d9172145c8..71ab51320ab1 100644 --- a/pkgs/desktops/kde-5/applications/filelight.nix +++ b/pkgs/applications/kde/filelight.nix @@ -1,6 +1,6 @@ { kdeApp, lib, kdeWrapper, - ecm, kdoctools, + extra-cmake-modules, kdoctools, kio, kparts, kxmlgui, qtscript, solid }: @@ -12,7 +12,7 @@ let license = with lib.licenses; [ gpl2 ]; maintainers = with lib.maintainers; [ fridh vcunat ]; }; - nativeBuildInputs = [ ecm kdoctools ]; + nativeBuildInputs = [ extra-cmake-modules kdoctools ]; propagatedBuildInputs = [ kio kparts kxmlgui qtscript solid ]; diff --git a/pkgs/desktops/kde-5/applications/gwenview.nix b/pkgs/applications/kde/gwenview.nix index 37a1605fe70a..0fa06ed0fbe2 100644 --- a/pkgs/desktops/kde-5/applications/gwenview.nix +++ b/pkgs/applications/kde/gwenview.nix @@ -1,6 +1,6 @@ { kdeApp, lib, kdeWrapper, - ecm, kdoctools, + extra-cmake-modules, kdoctools, baloo, exiv2, kactivities, kdelibs4support, kio, kipi-plugins, lcms2, libkdcraw, libkipi, phonon, qtimageformats, qtsvg, qtx11extras }: @@ -13,7 +13,7 @@ let license = with lib.licenses; [ gpl2 fdl12 ]; maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm kdoctools ]; + nativeBuildInputs = [ extra-cmake-modules kdoctools ]; propagatedBuildInputs = [ baloo kactivities kdelibs4support kio exiv2 lcms2 libkdcraw libkipi phonon qtimageformats qtsvg qtx11extras diff --git a/pkgs/desktops/kde-5/applications/kate.nix b/pkgs/applications/kde/kate.nix index 03cc0e1fe33b..cd320afd8d3b 100644 --- a/pkgs/desktops/kde-5/applications/kate.nix +++ b/pkgs/applications/kde/kate.nix @@ -1,6 +1,6 @@ { kdeApp, lib, kdeWrapper, - ecm, kdoctools, + extra-cmake-modules, kdoctools, kactivities, kconfig, kcrash, kdbusaddons, kguiaddons, kiconthemes, ki18n, kinit, kio, kitemmodels, kjobwidgets, knewstuff, knotifications, konsole, kparts, ktexteditor, kwindowsystem, kwallet, kxmlgui, libgit2, @@ -15,7 +15,7 @@ let license = with lib.licenses; [ gpl3 lgpl3 lgpl2 ]; maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm kdoctools ]; + nativeBuildInputs = [ extra-cmake-modules kdoctools ]; propagatedBuildInputs = [ kactivities ki18n kio ktexteditor kwindowsystem plasma-framework qtscript kconfig kcrash kguiaddons kiconthemes kinit kjobwidgets kparts diff --git a/pkgs/desktops/kde-5/applications/kcalc.nix b/pkgs/applications/kde/kcalc.nix index 10164692f770..8ec7591460e7 100644 --- a/pkgs/desktops/kde-5/applications/kcalc.nix +++ b/pkgs/applications/kde/kcalc.nix @@ -1,6 +1,6 @@ { kdeApp, lib, kdeWrapper, - ecm, kdoctools, + extra-cmake-modules, kdoctools, kconfig, kconfigwidgets, kguiaddons, kinit, knotifications, gmp }: @@ -12,7 +12,7 @@ let license = with lib.licenses; [ gpl2 ]; maintainers = [ lib.maintainers.fridh ]; }; - nativeBuildInputs = [ ecm kdoctools ]; + nativeBuildInputs = [ extra-cmake-modules kdoctools ]; propagatedBuildInputs = [ gmp kconfig kconfigwidgets kguiaddons kinit knotifications ]; diff --git a/pkgs/desktops/kde-5/applications/kcolorchooser.nix b/pkgs/applications/kde/kcolorchooser.nix index 1dc6ccbc44c4..c1266009b686 100644 --- a/pkgs/desktops/kde-5/applications/kcolorchooser.nix +++ b/pkgs/applications/kde/kcolorchooser.nix @@ -1,6 +1,6 @@ { kdeApp, lib, kdeWrapper, - ecm, ki18n, kwidgetsaddons, kxmlgui + extra-cmake-modules, ki18n, kwidgetsaddons, kxmlgui }: let @@ -11,7 +11,7 @@ let license = with lib.licenses; [ mit ]; maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; propagatedBuildInputs = [ ki18n kwidgetsaddons kxmlgui ]; }; in diff --git a/pkgs/desktops/kde-5/applications/kcontacts.nix b/pkgs/applications/kde/kcontacts.nix index 441d73d363d9..5143df60ef44 100644 --- a/pkgs/desktops/kde-5/applications/kcontacts.nix +++ b/pkgs/applications/kde/kcontacts.nix @@ -1,6 +1,6 @@ { kdeApp, lib, - ecm, ki18n, + extra-cmake-modules, ki18n, kcoreaddons, kconfig, kcodecs }: @@ -10,6 +10,6 @@ kdeApp { license = [ lib.licenses.lgpl21 ]; maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ki18n ]; + nativeBuildInputs = [ extra-cmake-modules ki18n ]; buildInputs = [ kcoreaddons kconfig kcodecs ]; } diff --git a/pkgs/desktops/kde-5/applications/kde-locale-4.nix b/pkgs/applications/kde/kde-locale-4.nix index e83794c60d81..e83794c60d81 100644 --- a/pkgs/desktops/kde-5/applications/kde-locale-4.nix +++ b/pkgs/applications/kde/kde-locale-4.nix diff --git a/pkgs/desktops/kde-5/applications/kde-locale-5.nix b/pkgs/applications/kde/kde-locale-5.nix index 2b9cc0e35eb0..772ebe37e44f 100644 --- a/pkgs/desktops/kde-5/applications/kde-locale-5.nix +++ b/pkgs/applications/kde/kde-locale-5.nix @@ -1,6 +1,6 @@ name: args: -{ kdeApp, cmake, ecm, gettext, kdoctools }: +{ kdeApp, cmake, extra-cmake-modules, gettext, kdoctools }: kdeApp (args // { sname = "kde-l10n-${name}"; @@ -9,7 +9,7 @@ kdeApp (args // { outputs = [ "out" ]; nativeBuildInputs = - [ cmake ecm gettext kdoctools ] + [ cmake extra-cmake-modules gettext kdoctools ] ++ (args.nativeBuildInputs or []); preConfigure = '' diff --git a/pkgs/desktops/kde-5/applications/kdegraphics-mobipocket.nix b/pkgs/applications/kde/kdegraphics-mobipocket.nix index 984524dc1b2b..e50c92f88848 100644 --- a/pkgs/desktops/kde-5/applications/kdegraphics-mobipocket.nix +++ b/pkgs/applications/kde/kdegraphics-mobipocket.nix @@ -1,6 +1,6 @@ { kdeApp, lib, - ecm, + extra-cmake-modules, kio }: @@ -10,6 +10,6 @@ kdeApp { license = [ lib.licenses.gpl2Plus ]; maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; buildInputs = [ kio ]; } diff --git a/pkgs/desktops/kde-5/applications/kdegraphics-thumbnailers.nix b/pkgs/applications/kde/kdegraphics-thumbnailers.nix index c3947226690f..5aa974a9c960 100644 --- a/pkgs/desktops/kde-5/applications/kdegraphics-thumbnailers.nix +++ b/pkgs/applications/kde/kdegraphics-thumbnailers.nix @@ -1,6 +1,6 @@ { kdeApp, lib, - ecm, kio, libkexiv2, libkdcraw + extra-cmake-modules, kio, libkexiv2, libkdcraw }: kdeApp { @@ -9,6 +9,6 @@ kdeApp { license = [ lib.licenses.lgpl21 ]; maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; propagatedBuildInputs = [ kio libkexiv2 libkdcraw ]; } diff --git a/pkgs/desktops/kde-5/applications/kdelibs/0001-old-kde4-cmake-policies.patch b/pkgs/applications/kde/kdelibs/0001-old-kde4-cmake-policies.patch index b7d7300e9a84..b7d7300e9a84 100644 --- a/pkgs/desktops/kde-5/applications/kdelibs/0001-old-kde4-cmake-policies.patch +++ b/pkgs/applications/kde/kdelibs/0001-old-kde4-cmake-policies.patch diff --git a/pkgs/desktops/kde-5/applications/kdelibs/0002-polkit-install-path.patch b/pkgs/applications/kde/kdelibs/0002-polkit-install-path.patch index ff0306ea1488..ff0306ea1488 100644 --- a/pkgs/desktops/kde-5/applications/kdelibs/0002-polkit-install-path.patch +++ b/pkgs/applications/kde/kdelibs/0002-polkit-install-path.patch diff --git a/pkgs/desktops/kde-5/applications/kdelibs/0003-remove_xdg_impurities.patch b/pkgs/applications/kde/kdelibs/0003-remove_xdg_impurities.patch index a79d7b2b7d16..a79d7b2b7d16 100644 --- a/pkgs/desktops/kde-5/applications/kdelibs/0003-remove_xdg_impurities.patch +++ b/pkgs/applications/kde/kdelibs/0003-remove_xdg_impurities.patch diff --git a/pkgs/desktops/kde-5/applications/kdelibs/default.nix b/pkgs/applications/kde/kdelibs/default.nix index c7c8c250a838..0292b51a48d4 100644 --- a/pkgs/desktops/kde-5/applications/kdelibs/default.nix +++ b/pkgs/applications/kde/kdelibs/default.nix @@ -1,5 +1,5 @@ { - kdeApp, lib, src, version, + kdeApp, lib, automoc4, bison, cmake, flex, libxslt, perl, pkgconfig, shared_mime_info, attica, attr, avahi, docbook_xml_dtd_42, docbook_xsl, giflib, ilmbase, libdbusmenu_qt, libjpeg, libxml2, phonon, polkit_qt4, qca2, qt4, diff --git a/pkgs/desktops/kde-5/applications/kdenetwork-filesharing.nix b/pkgs/applications/kde/kdenetwork-filesharing.nix index 4aa119675285..20f81563c3b4 100644 --- a/pkgs/desktops/kde-5/applications/kdenetwork-filesharing.nix +++ b/pkgs/applications/kde/kdenetwork-filesharing.nix @@ -1,6 +1,6 @@ { kdeApp, lib, - ecm, kdoctools, + extra-cmake-modules, kdoctools, kcoreaddons, ki18n, kio, kwidgetsaddons, samba }: @@ -10,6 +10,6 @@ kdeApp { license = [ lib.licenses.gpl2 lib.licenses.lgpl21 ]; maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm kdoctools ]; + nativeBuildInputs = [ extra-cmake-modules kdoctools ]; propagatedBuildInputs = [ kcoreaddons ki18n kio kwidgetsaddons samba ]; } diff --git a/pkgs/desktops/kde-5/applications/kdenlive.nix b/pkgs/applications/kde/kdenlive.nix index 071ec21bbd01..071ec21bbd01 100644 --- a/pkgs/desktops/kde-5/applications/kdenlive.nix +++ b/pkgs/applications/kde/kdenlive.nix diff --git a/pkgs/desktops/kde-5/applications/kdf.nix b/pkgs/applications/kde/kdf.nix index c73eadc1df44..97e74eb2e125 100644 --- a/pkgs/desktops/kde-5/applications/kdf.nix +++ b/pkgs/applications/kde/kdf.nix @@ -1,6 +1,6 @@ { kdeApp, lib, kdeWrapper, - ecm, kdoctools, + extra-cmake-modules, kdoctools, kcmutils }: @@ -12,7 +12,7 @@ let license = with lib.licenses; [ gpl2 ]; maintainers = [ lib.maintainers.peterhoeg ]; }; - nativeBuildInputs = [ ecm kdoctools ]; + nativeBuildInputs = [ extra-cmake-modules kdoctools ]; propagatedBuildInputs = [ kcmutils ]; diff --git a/pkgs/desktops/kde-5/applications/kgpg.nix b/pkgs/applications/kde/kgpg.nix index cd462acdf2b0..c44285982293 100644 --- a/pkgs/desktops/kde-5/applications/kgpg.nix +++ b/pkgs/applications/kde/kgpg.nix @@ -1,6 +1,6 @@ { kdeApp, lib, - ecm, kdoctools, ki18n, + extra-cmake-modules, kdoctools, ki18n, akonadi-contacts, gpgme, karchive, kcodecs, kcontacts, kcoreaddons, kcrash, kdbusaddons, kiconthemes, kjobwidgets, kio, knotifications, kservice, ktextwidgets, kxmlgui, kwidgetsaddons, kwindowsystem @@ -8,7 +8,7 @@ kdeApp { name = "kgpg"; - nativeBuildInputs = [ ecm kdoctools ki18n ]; + nativeBuildInputs = [ extra-cmake-modules kdoctools ki18n ]; buildInputs = [ akonadi-contacts gpgme karchive kcodecs kcontacts kcoreaddons kcrash kdbusaddons kiconthemes kjobwidgets kio knotifications kservice ktextwidgets kxmlgui diff --git a/pkgs/desktops/kde-5/applications/khelpcenter.nix b/pkgs/applications/kde/khelpcenter.nix index 3f13d131c77a..0579faa72a01 100644 --- a/pkgs/desktops/kde-5/applications/khelpcenter.nix +++ b/pkgs/applications/kde/khelpcenter.nix @@ -1,6 +1,6 @@ { kdeApp, kdeWrapper, - ecm, kdoctools, + extra-cmake-modules, kdoctools, grantlee, kconfig, kcoreaddons, kdbusaddons, ki18n, kinit, kcmutils, kdelibs4support, khtml, kservice, xapian }: @@ -9,7 +9,7 @@ let unwrapped = kdeApp { name = "khelpcenter"; - nativeBuildInputs = [ ecm kdoctools ]; + nativeBuildInputs = [ extra-cmake-modules kdoctools ]; buildInputs = [ grantlee kdelibs4support khtml ki18n kconfig kcoreaddons kdbusaddons kinit kcmutils kservice xapian diff --git a/pkgs/desktops/kde-5/applications/kig.nix b/pkgs/applications/kde/kig.nix index 9636f82974b3..9f38079316fa 100644 --- a/pkgs/desktops/kde-5/applications/kig.nix +++ b/pkgs/applications/kde/kig.nix @@ -1,6 +1,6 @@ { kdeApp, lib, kdeWrapper - , ecm, kdoctools, kparts + , extra-cmake-modules, kdoctools, kparts , qtsvg, qtxmlpatterns, ktexteditor, boost }: @@ -12,7 +12,7 @@ let license = with lib.licenses; [ gpl2 ]; maintainers = with lib.maintainers; [ raskin ]; }; - nativeBuildInputs = [ ecm kdoctools ]; + nativeBuildInputs = [ extra-cmake-modules kdoctools ]; buildInputs = [ kparts qtsvg qtxmlpatterns ktexteditor boost ]; diff --git a/pkgs/desktops/kde-5/applications/kio-extras.nix b/pkgs/applications/kde/kio-extras.nix index fe3e3fad200b..77f795167fc0 100644 --- a/pkgs/desktops/kde-5/applications/kio-extras.nix +++ b/pkgs/applications/kde/kio-extras.nix @@ -1,5 +1,5 @@ { - kdeApp, lib, ecm, kdoctools, shared_mime_info, + kdeApp, lib, extra-cmake-modules, kdoctools, shared_mime_info, exiv2, kactivities, karchive, kbookmarks, kconfig, kconfigwidgets, kcoreaddons, kdbusaddons, kguiaddons, kdnssd, kiconthemes, ki18n, kio, khtml, kdelibs4support, kpty, libmtp, libssh, openexr, ilmbase, openslp, phonon, @@ -12,7 +12,7 @@ kdeApp { license = with lib.licenses; [ gpl2 lgpl21 ]; maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm kdoctools shared_mime_info ]; + nativeBuildInputs = [ extra-cmake-modules kdoctools shared_mime_info ]; propagatedBuildInputs = [ exiv2 kactivities karchive kbookmarks kconfig kconfigwidgets kcoreaddons kdbusaddons kguiaddons kdnssd kiconthemes ki18n kio khtml kdelibs4support diff --git a/pkgs/desktops/kde-5/applications/kmime.nix b/pkgs/applications/kde/kmime.nix index d60909ec7bc9..c17b3fdcd8e9 100644 --- a/pkgs/desktops/kde-5/applications/kmime.nix +++ b/pkgs/applications/kde/kmime.nix @@ -1,6 +1,6 @@ { kdeApp, lib, - ecm, ki18n, + extra-cmake-modules, ki18n, kcodecs }: @@ -10,6 +10,6 @@ kdeApp { license = [ lib.licenses.lgpl21 ]; maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ki18n ]; + nativeBuildInputs = [ extra-cmake-modules ki18n ]; buildInputs = [ kcodecs ]; } diff --git a/pkgs/desktops/kde-5/applications/kmix.nix b/pkgs/applications/kde/kmix.nix index 46a67e06ee0b..6ab653cfce06 100644 --- a/pkgs/desktops/kde-5/applications/kmix.nix +++ b/pkgs/applications/kde/kmix.nix @@ -1,6 +1,6 @@ { kdeApp, lib, kdeWrapper, - ecm, kdoctools, + extra-cmake-modules, kdoctools, kglobalaccel, kxmlgui, kcoreaddons, kdelibs4support, plasma-framework, libpulseaudio, alsaLib, libcanberra_kde }: @@ -13,7 +13,7 @@ let license = with lib.licenses; [ gpl2 lgpl21 fdl12 ]; maintainers = [ lib.maintainers.rongcuid ]; }; - nativeBuildInputs = [ ecm kdoctools ]; + nativeBuildInputs = [ extra-cmake-modules kdoctools ]; buildInputs = [ libpulseaudio alsaLib libcanberra_kde ]; propagatedBuildInputs = [ kglobalaccel kxmlgui kcoreaddons kdelibs4support diff --git a/pkgs/desktops/kde-5/applications/kompare.nix b/pkgs/applications/kde/kompare.nix index 45789edbfcc8..660090dc84ae 100644 --- a/pkgs/desktops/kde-5/applications/kompare.nix +++ b/pkgs/applications/kde/kompare.nix @@ -1,6 +1,6 @@ { kdeApp, lib, kdeWrapper, - ecm, kdoctools, + extra-cmake-modules, kdoctools, kparts, ktexteditor, kwidgetsaddons, libkomparediff2 }: @@ -9,7 +9,7 @@ let kdeApp { name = "kompare"; meta = { license = with lib.licenses; [ gpl2 ]; }; - nativeBuildInputs = [ ecm kdoctools ]; + nativeBuildInputs = [ extra-cmake-modules kdoctools ]; propagatedBuildInputs = [ kparts ktexteditor kwidgetsaddons libkomparediff2 ]; diff --git a/pkgs/desktops/kde-5/applications/konsole.nix b/pkgs/applications/kde/konsole.nix index 2dfd305b46b2..15b6373bdb02 100644 --- a/pkgs/desktops/kde-5/applications/konsole.nix +++ b/pkgs/applications/kde/konsole.nix @@ -1,6 +1,6 @@ { kdeApp, lib, kdeWrapper, - ecm, kdoctools, + extra-cmake-modules, kdoctools, kbookmarks, kcompletion, kconfig, kconfigwidgets, kcoreaddons, kguiaddons, ki18n, kiconthemes, kinit, kdelibs4support, kio, knotifications, knotifyconfig, kparts, kpty, kservice, ktextwidgets, kwidgetsaddons, @@ -15,7 +15,7 @@ let license = with lib.licenses; [ gpl2 lgpl21 fdl12 ]; maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm kdoctools ]; + nativeBuildInputs = [ extra-cmake-modules kdoctools ]; propagatedBuildInputs = [ kdelibs4support ki18n kwindowsystem qtscript kbookmarks kcompletion kconfig kconfigwidgets kcoreaddons kguiaddons kiconthemes kinit kio diff --git a/pkgs/desktops/kde-5/applications/kwalletmanager.nix b/pkgs/applications/kde/kwalletmanager.nix index 03c2ab3853a1..afa870d90a54 100644 --- a/pkgs/desktops/kde-5/applications/kwalletmanager.nix +++ b/pkgs/applications/kde/kwalletmanager.nix @@ -1,7 +1,7 @@ { lib , kdeApp , kdeWrapper -, ecm +, extra-cmake-modules , kdoctools , kauth , kcmutils @@ -19,7 +19,7 @@ let license = with lib.licenses; [ gpl2 ]; maintainers = with lib.maintainers; [ fridh ]; }; - nativeBuildInputs = [ ecm kdoctools ]; + nativeBuildInputs = [ extra-cmake-modules kdoctools ]; propagatedBuildInputs = [ kauth kcmutils diff --git a/pkgs/desktops/kde-5/applications/l10n.nix b/pkgs/applications/kde/l10n.nix index f2e5f843b5d9..87e7a82ce466 100644 --- a/pkgs/desktops/kde-5/applications/l10n.nix +++ b/pkgs/applications/kde/l10n.nix @@ -1,4 +1,4 @@ -{ callPackage, pkgs, lib }: +{ callPackage, recurseIntoAttrs, lib }: let @@ -7,7 +7,7 @@ let in -lib.mapAttrs (name: attr: pkgs.recurseIntoAttrs attr) { +lib.mapAttrs (name: attr: recurseIntoAttrs attr) { ar = { qt4 = callPackage (kdeLocale4 "ar" {}) {}; qt5 = callPackage (kdeLocale5 "ar" {}) {}; diff --git a/pkgs/desktops/kde-5/applications/libkdcraw.nix b/pkgs/applications/kde/libkdcraw.nix index 421f7dbb4cfe..179e9f414dc3 100644 --- a/pkgs/desktops/kde-5/applications/libkdcraw.nix +++ b/pkgs/applications/kde/libkdcraw.nix @@ -1,4 +1,4 @@ -{ kdeApp, lib, ecm, libraw }: +{ kdeApp, lib, extra-cmake-modules, libraw, qtbase }: kdeApp { name = "libkdcraw"; @@ -6,6 +6,7 @@ kdeApp { license = with lib.licenses; [ gpl2 lgpl21 bsd3 ]; maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; + buildInputs = [ qtbase ]; propagatedBuildInputs = [ libraw ]; } diff --git a/pkgs/desktops/kde-5/applications/libkexiv2.nix b/pkgs/applications/kde/libkexiv2.nix index 0fac0759ab6b..0991c5df5ab4 100644 --- a/pkgs/desktops/kde-5/applications/libkexiv2.nix +++ b/pkgs/applications/kde/libkexiv2.nix @@ -1,4 +1,4 @@ -{ kdeApp, lib, exiv2, ecm }: +{ kdeApp, lib, exiv2, extra-cmake-modules, qtbase }: kdeApp { name = "libkexiv2"; @@ -6,6 +6,7 @@ kdeApp { license = with lib.licenses; [ gpl2 lgpl21 bsd3 ]; maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; + buildInputs = [ qtbase ]; propagatedBuildInputs = [ exiv2 ]; } diff --git a/pkgs/desktops/kde-5/applications/libkipi.nix b/pkgs/applications/kde/libkipi.nix index fa9dcc8323d1..32eeb171ff89 100644 --- a/pkgs/desktops/kde-5/applications/libkipi.nix +++ b/pkgs/applications/kde/libkipi.nix @@ -1,4 +1,4 @@ -{ kdeApp, lib, ecm, kconfig, ki18n, kservice, kxmlgui }: +{ kdeApp, lib, extra-cmake-modules, kconfig, ki18n, kservice, kxmlgui }: kdeApp { name = "libkipi"; @@ -6,6 +6,6 @@ kdeApp { license = with lib.licenses; [ gpl2 lgpl21 bsd3 ]; maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; propagatedBuildInputs = [ kconfig ki18n kservice kxmlgui ]; } diff --git a/pkgs/applications/kde/libkomparediff2.nix b/pkgs/applications/kde/libkomparediff2.nix new file mode 100644 index 000000000000..aacc89a0efe3 --- /dev/null +++ b/pkgs/applications/kde/libkomparediff2.nix @@ -0,0 +1,7 @@ +{ kdeApp, lib, extra-cmake-modules, ki18n, kxmlgui, kcodecs, kio }: + +kdeApp { + name = "libkomparediff2"; + nativeBuildInputs = [ extra-cmake-modules ]; + propagatedBuildInputs = [ kcodecs ki18n kxmlgui kio ]; +} diff --git a/pkgs/desktops/kde-5/applications/marble.nix b/pkgs/applications/kde/marble.nix index 5b8a82dbf098..c151396f2476 100644 --- a/pkgs/desktops/kde-5/applications/marble.nix +++ b/pkgs/applications/kde/marble.nix @@ -1,5 +1,5 @@ { kdeApp, lib, kdeWrapper -, ecm, qtscript, qtsvg, qtquickcontrols +, extra-cmake-modules, qtscript, qtsvg, qtquickcontrols , gpsd }: @@ -9,7 +9,7 @@ let name = "marble"; meta.license = with lib.licenses; [ lgpl21 gpl3 ]; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; propagatedBuildInputs = [ qtscript qtsvg qtquickcontrols gpsd diff --git a/pkgs/desktops/kde-5/applications/okteta.nix b/pkgs/applications/kde/okteta.nix index 6683b9876fcb..59520e285327 100644 --- a/pkgs/desktops/kde-5/applications/okteta.nix +++ b/pkgs/applications/kde/okteta.nix @@ -1,6 +1,6 @@ { kdeApp, lib, kdeWrapper, - ecm, kdoctools, + extra-cmake-modules, kdoctools, kconfig, kinit, kcmutils, kconfigwidgets, knewstuff, kparts, qca-qt5 }: @@ -13,7 +13,7 @@ let license = with lib.licenses; [ gpl2 ]; maintainers = with lib.maintainers; [ peterhoeg ]; }; - nativeBuildInputs = [ ecm kdoctools ]; + nativeBuildInputs = [ extra-cmake-modules kdoctools ]; propagatedBuildInputs = [ kconfig kinit kcmutils kconfigwidgets knewstuff kparts qca-qt5 diff --git a/pkgs/desktops/kde-5/applications/okular.nix b/pkgs/applications/kde/okular.nix index 499e8cc93681..f5b3e38ca7c7 100644 --- a/pkgs/desktops/kde-5/applications/okular.nix +++ b/pkgs/applications/kde/okular.nix @@ -1,6 +1,6 @@ { kdeApp, lib, kdeWrapper, - ecm, kdoctools, + extra-cmake-modules, kdoctools, djvulibre, ebook_tools, kactivities, karchive, kbookmarks, kcompletion, kconfig, kconfigwidgets, kcoreaddons, kdbusaddons, kdegraphics-mobipocket, kiconthemes, kjs, khtml, kio, kparts, kpty, kwallet, kwindowsystem, libkexiv2, @@ -10,7 +10,7 @@ let unwrapped = kdeApp { name = "okular"; - nativeBuildInputs = [ ecm kdoctools ]; + nativeBuildInputs = [ extra-cmake-modules kdoctools ]; propagatedBuildInputs = [ djvulibre ebook_tools kactivities karchive kbookmarks kcompletion kconfig kconfigwidgets kcoreaddons kdbusaddons kdegraphics-mobipocket kiconthemes diff --git a/pkgs/desktops/kde-5/applications/print-manager.nix b/pkgs/applications/kde/print-manager.nix index c4a82780b448..0a3d311eb27a 100644 --- a/pkgs/desktops/kde-5/applications/print-manager.nix +++ b/pkgs/applications/kde/print-manager.nix @@ -1,5 +1,5 @@ { - kdeApp, lib, ecm, + kdeApp, lib, extra-cmake-modules, cups, kconfig, kconfigwidgets, kdbusaddons, kiconthemes, ki18n, kcmutils, kio, knotifications, kwidgetsaddons, kwindowsystem, kitemviews, plasma-framework, qtdeclarative @@ -11,7 +11,7 @@ kdeApp { license = [ lib.licenses.gpl2 ]; maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; propagatedBuildInputs = [ cups kconfig kconfigwidgets kdbusaddons kiconthemes kcmutils knotifications kwidgetsaddons kitemviews ki18n kio kwindowsystem plasma-framework diff --git a/pkgs/desktops/kde-5/applications/spectacle.nix b/pkgs/applications/kde/spectacle.nix index 4c3a5246b2e7..30abfc23e834 100644 --- a/pkgs/desktops/kde-5/applications/spectacle.nix +++ b/pkgs/applications/kde/spectacle.nix @@ -1,6 +1,6 @@ { kdeApp, lib, kdeWrapper, - ecm, kdoctools, + extra-cmake-modules, kdoctools, kconfig, kcoreaddons, kdbusaddons, kdeclarative, ki18n, kio, kipi-plugins, knotifications, kscreen, kwidgetsaddons, kwindowsystem, kxmlgui, libkipi, xcb-util-cursor @@ -11,7 +11,7 @@ let kdeApp { name = "spectacle"; meta = with lib; { maintainers = with maintainers; [ ttuegel ]; }; - nativeBuildInputs = [ ecm kdoctools ]; + nativeBuildInputs = [ extra-cmake-modules kdoctools ]; propagatedBuildInputs = [ kconfig kcoreaddons kdbusaddons kdeclarative ki18n kio knotifications kscreen kwidgetsaddons kwindowsystem kxmlgui libkipi xcb-util-cursor diff --git a/pkgs/desktops/kde-5/applications/srcs.nix b/pkgs/applications/kde/srcs.nix index 60c412e55fda..60c412e55fda 100644 --- a/pkgs/desktops/kde-5/applications/srcs.nix +++ b/pkgs/applications/kde/srcs.nix diff --git a/pkgs/applications/misc/calibre/default.nix b/pkgs/applications/misc/calibre/default.nix index 16ac38b3263f..fc0374985cd7 100644 --- a/pkgs/applications/misc/calibre/default.nix +++ b/pkgs/applications/misc/calibre/default.nix @@ -5,12 +5,12 @@ }: stdenv.mkDerivation rec { - version = "2.79.1"; + version = "2.80.0"; name = "calibre-${version}"; src = fetchurl { url = "https://download.calibre-ebook.com/${version}/${name}.tar.xz"; - sha256 = "0slk3cili50a8kwwsk6syqqrcz0yx8yjvhm8gyggn2k2kpqjax15"; + sha256 = "1cgj30b0imv4gl12y1lcd07w3bx10sapclvjr78z78n7g32xp9ik"; }; patches = [ diff --git a/pkgs/applications/misc/dfilemanager/default.nix b/pkgs/applications/misc/dfilemanager/default.nix index ce35593d91d1..907c9d612b85 100644 --- a/pkgs/applications/misc/dfilemanager/default.nix +++ b/pkgs/applications/misc/dfilemanager/default.nix @@ -17,7 +17,7 @@ stdenv.mkDerivation { meta = { homepage = "http://dfilemanager.sourceforge.net/"; - description = "File manager written in Qt/C++, it does use one library from kdelibs, the solid lib for easy device handling"; + description = "File manager written in Qt/C++"; license = stdenv.lib.licenses.gpl2; platforms = stdenv.lib.platforms.unix; maintainers = [ stdenv.lib.maintainers.eduarrrd ]; diff --git a/pkgs/applications/misc/hr/default.nix b/pkgs/applications/misc/hr/default.nix new file mode 100644 index 000000000000..2fd56e3c5552 --- /dev/null +++ b/pkgs/applications/misc/hr/default.nix @@ -0,0 +1,28 @@ +{ stdenv, fetchFromGitHub }: + +stdenv.mkDerivation rec { + name = "hr-${version}"; + version = "1.2"; + + src = fetchFromGitHub { + owner = "LuRsT"; + repo = "hr"; + rev = version; + sha256 = "162vkip2772jl59lschpinimpg4ssiyg7fq0va5cx4d7wldpqmks"; + }; + + dontBuild = true; + installFlags = [ "PREFIX=$(out)" "MANPREFIX=$(out)/share" ]; + + preInstall = '' + mkdir -p $out/{bin,share} + ''; + + meta = with stdenv.lib; { + homepage = https://github.com/LuRsT/hr; + description = "A horizontal bar for your terminal"; + license = licenses.mit; + maintainers = [ maintainers.matthiasbeyer ]; + platforms = platforms.unix; + }; +} diff --git a/pkgs/applications/misc/k3b/default.nix b/pkgs/applications/misc/k3b/default.nix index 8c69e36a4e49..bda647659416 100644 --- a/pkgs/applications/misc/k3b/default.nix +++ b/pkgs/applications/misc/k3b/default.nix @@ -1,8 +1,8 @@ { stdenv, lib, fetchurl, makeWrapper, automoc4, cmake, perl, pkgconfig , shared_mime_info, libvorbis, taglib, flac, libsamplerate , libdvdread, lame, libsndfile, libmad, gettext , transcode, cdrdao -, dvdplusrwtools, vcdimager, cdparanoia, kdelibs, libdvdcss, ffmpeg -, kdemultimedia, phonon, libkcddb ? null +, dvdplusrwtools, vcdimager, cdparanoia, kdelibs4, libdvdcss, ffmpeg +, libkcddb, phonon }: let @@ -24,8 +24,8 @@ in stdenv.mkDerivation rec { buildInputs = [ shared_mime_info libvorbis taglib flac libsamplerate libdvdread - lame libsndfile libmad stdenv.cc.libc kdelibs - kdemultimedia phonon libkcddb makeWrapper cdparanoia + lame libsndfile libmad stdenv.cc.libc kdelibs4 + phonon libkcddb makeWrapper cdparanoia libdvdcss ffmpeg ]; diff --git a/pkgs/applications/misc/kde-wacomtablet/default.nix b/pkgs/applications/misc/kde-wacomtablet/default.nix deleted file mode 100644 index 013efee8ec91..000000000000 --- a/pkgs/applications/misc/kde-wacomtablet/default.nix +++ /dev/null @@ -1,23 +0,0 @@ -{ stdenv, fetchurl, automoc4, cmake, gettext, perl, pkgconfig -, kdelibs, xf86_input_wacom }: - -stdenv.mkDerivation rec { - name = "wacomtablet-2.1.0"; - - src = fetchurl { - url = "http://kde-apps.org/CONTENT/content-files/114856-wacomtablet-2.1.0.tar.xz"; - sha256 = "17n1p5v2yx517hkqd13pyl3wnrdnh6pfzwf2y2csrfckyndhwk8w"; - }; - - buildInputs = [ kdelibs xf86_input_wacom ]; - - nativeBuildInputs = [ automoc4 cmake gettext perl pkgconfig ]; - - meta = with stdenv.lib; { - description = "KDE Wacom graphic tablet configuration tool"; - license = licenses.gpl2Plus; - homepage = http://kde-apps.org/content/show.php/wacom+tablet?content=114856; - platforms = platforms.linux; - maintainers = [ maintainers.goibhniu maintainers.urkud ]; - }; -} diff --git a/pkgs/applications/misc/kdeconnect/0.7.nix b/pkgs/applications/misc/kdeconnect/0.7.nix deleted file mode 100644 index 551d7c06468a..000000000000 --- a/pkgs/applications/misc/kdeconnect/0.7.nix +++ /dev/null @@ -1,36 +0,0 @@ -{ stdenv, fetchurl, automoc4, cmake, perl, pkgconfig -, gettext, kdelibs, libXtst, libfakekey, makeWrapper, qca2, qjson -}: - -stdenv.mkDerivation rec { - name = "kdeconnect-${version}"; - version = "0.7.3"; - - src = fetchurl { - url = "http://download.kde.org/unstable/kdeconnect/${version}/src/kdeconnect-kde-${version}.tar.xz"; - sha256 = "1vrr047bq5skxvibv5pb9ch9dxh005zmar017jzbyb9hilxr8kg4"; - }; - - buildInputs = [ gettext kdelibs libXtst libfakekey makeWrapper qca2 qjson ]; - - nativeBuildInputs = [ automoc4 cmake perl pkgconfig ]; - - meta = with stdenv.lib; { - description = "A tool to connect and sync your devices with KDE"; - longDescription = '' - The corresponding Android app, "KDE Connect", is available in - F-Droid and Google play and has the following features: - - - Share files and URLs to KDE from any app - - Clipboard share: copy from or to your desktop - - Notifications sync (4.3+): Read your Android notifications from KDE - - Multimedia remote control: Use your phone as a remote control - - WiFi connection: no usb wire or bluetooth needed - - RSA Encryption: your information is safe - ''; - license = licenses.gpl2; - homepage = https://projects.kde.org/projects/playground/base/kdeconnect-kde; - platforms = platforms.linux; - maintainers = [ maintainers.goibhniu ]; - }; -} diff --git a/pkgs/applications/misc/kgocode/default.nix b/pkgs/applications/misc/kgocode/default.nix index 3088b5b3c653..b12c9fe25510 100644 --- a/pkgs/applications/misc/kgocode/default.nix +++ b/pkgs/applications/misc/kgocode/default.nix @@ -1,9 +1,9 @@ -{ fetchgit, stdenv, cmake, kdelibs, automoc4 } : +{ fetchgit, stdenv, cmake, kdelibs4, automoc4 } : stdenv.mkDerivation rec { name = "kgocode-0.0.1"; - buildInputs = [ cmake kdelibs automoc4 ]; + buildInputs = [ cmake kdelibs4 automoc4 ]; src = fetchgit { url = https://bitbucket.org/lucashnegri/kgocode.git; diff --git a/pkgs/applications/misc/krename/kde5.nix b/pkgs/applications/misc/krename/default.nix index a2137060ef64..8ce74850e1a4 100644 --- a/pkgs/applications/misc/krename/kde5.nix +++ b/pkgs/applications/misc/krename/default.nix @@ -1,6 +1,6 @@ { kdeDerivation, kdeWrapper, fetchFromGitHub, lib, - ecm, kdoctools, kconfig, kinit, kjsembed, + extra-cmake-modules, kdoctools, kconfig, kinit, kjsembed, taglib, exiv2, podofo }: @@ -25,7 +25,7 @@ let }; buildInputs = [ taglib exiv2 podofo ]; - nativeBuildInputs = [ ecm kdoctools ]; + nativeBuildInputs = [ extra-cmake-modules kdoctools ]; propagatedBuildInputs = [ kconfig kinit kjsembed ]; }; diff --git a/pkgs/applications/misc/krename/kde4.nix b/pkgs/applications/misc/krename/kde4.nix deleted file mode 100644 index 1e4da7fa11f7..000000000000 --- a/pkgs/applications/misc/krename/kde4.nix +++ /dev/null @@ -1,22 +0,0 @@ -{ stdenv, fetchurl, automoc4, cmake, gettext, perl, pkgconfig -, kdelibs, taglib, exiv2, podofo, qt4, phonon -}: - -stdenv.mkDerivation rec { - name = "krename-4.0.9"; - - src = fetchurl { - url = "mirror://sourceforge/krename/${name}.tar.bz2"; - sha256 = "11bdg5vdcs393n0aibhm3jh3wxlk5kz78jhkwf7cj9086qkg9wds"; - }; - - buildInputs = [ kdelibs taglib exiv2 podofo qt4 phonon ]; - nativeBuildInputs = [ automoc4 cmake gettext perl pkgconfig ]; - - meta = { - homepage = http://www.krename.net; - description = "A powerful batch renamer for KDE"; - inherit (kdelibs.meta) platforms; - maintainers = [ stdenv.lib.maintainers.urkud ]; - }; -} diff --git a/pkgs/applications/misc/krusader/default.nix b/pkgs/applications/misc/krusader/default.nix index 2a9c6305d42e..75b2da6e8a25 100644 --- a/pkgs/applications/misc/krusader/default.nix +++ b/pkgs/applications/misc/krusader/default.nix @@ -1,5 +1,5 @@ { stdenv, fetchurl, automoc4, cmake, gettext, perl, pkgconfig -, kdelibs, kde_baseapps +, kdelibs4, kde_baseapps }: stdenv.mkDerivation rec { @@ -8,7 +8,7 @@ stdenv.mkDerivation rec { url = "mirror://sourceforge/krusader/${name}.tar.bz2"; sha256 = "1q1m4cjzz2m41pdpxnwrsiczc7990785b700lv64midjjgjnr7j6"; }; - buildInputs = [ kdelibs kde_baseapps ]; + buildInputs = [ kdelibs4 kde_baseapps ]; nativeBuildInputs = [ automoc4 cmake gettext perl pkgconfig ]; NIX_CFLAGS_COMPILE = "-fpermissive"; # fix build with newer gcc versions meta = { @@ -16,6 +16,6 @@ stdenv.mkDerivation rec { license = "GPL"; homepage = http://www.krusader.org; maintainers = with stdenv.lib.maintainers; [ sander urkud ]; - inherit (kdelibs.meta) platforms; + inherit (kdelibs4.meta) platforms; }; } diff --git a/pkgs/applications/misc/mupdf/default.nix b/pkgs/applications/misc/mupdf/default.nix index ba2313fc7b5a..a4687c385c65 100644 --- a/pkgs/applications/misc/mupdf/default.nix +++ b/pkgs/applications/misc/mupdf/default.nix @@ -18,6 +18,12 @@ stdenv.mkDerivation rec { url = "https://git.archlinux.org/svntogit/community.git/plain/mupdf/trunk/0001-mupdf-openjpeg.patch?id=5a28ad0a8999a9234aa7848096041992cc988099"; sha256 = "1i24qr4xagyapx4bijjfksj4g3bxz8vs5c2mn61nkm29c63knp75"; }) + + (fetchurl { + name = "CVE-2017-5896.patch"; + url = "http://git.ghostscript.com/?p=mupdf.git;a=patch;h=2c4e5867ee699b1081527bc6c6ea0e99a35a5c27"; + sha256 = "14k7x47ifx82sds1c06ibzbmcparfg80719jhgwjk6w1vkh4r693"; + }) ]; makeFlags = [ "prefix=$(out)" ]; diff --git a/pkgs/applications/misc/mwic/default.nix b/pkgs/applications/misc/mwic/default.nix new file mode 100644 index 000000000000..7b9b04c66c8d --- /dev/null +++ b/pkgs/applications/misc/mwic/default.nix @@ -0,0 +1,31 @@ +{ stdenv, fetchurl, pythonPackages }: + +stdenv.mkDerivation rec { + version = "0.7.2"; + name = "mwic-${version}"; + + src = fetchurl { + url = "https://github.com/jwilk/mwic/releases/download/${version}/${name}.tar.gz"; + sha256 = "1linpagf0i0ggicq02fcvz4rpx7xdpy80ys49wx7fnmz7f3jc6jy"; + }; + + makeFlags=["PREFIX=\${out}"]; + + nativeBuildInputs = [ + pythonPackages.wrapPython + ]; + + propagatedBuildInputs = with pythonPackages; [ pyenchant regex ]; + + postFixup = '' + buildPythonPath "$out" + ''; + + meta = with stdenv.lib; { + homepage = http://jwilk.net/software/mwic; + description = "spell-checker that groups possible misspellings and shows them in their contexts"; + license = licenses.mit; + maintainers = with maintainers; [ matthiasbeyer ]; + }; +} + diff --git a/pkgs/applications/misc/octoprint/default.nix b/pkgs/applications/misc/octoprint/default.nix index 9e287bf6fd5b..e5c35c5290d6 100644 --- a/pkgs/applications/misc/octoprint/default.nix +++ b/pkgs/applications/misc/octoprint/default.nix @@ -92,6 +92,7 @@ in pythonPackages.buildPythonApplication rec { -e 's,Click>=[^"]*,Click,g' \ -e 's,websocket-client>=[^"]*,websocket-client,g' \ -e 's,scandir>=[^"]*,scandir,g' \ + -e 's,Jinja2>=[^"]*,Jinja2,g' \ setup.py ''; diff --git a/pkgs/applications/misc/qsyncthingtray/default.nix b/pkgs/applications/misc/qsyncthingtray/default.nix index 96d2aa0c85b7..ba8b946f3fbb 100644 --- a/pkgs/applications/misc/qsyncthingtray/default.nix +++ b/pkgs/applications/misc/qsyncthingtray/default.nix @@ -3,14 +3,14 @@ , qmakeHook }: stdenv.mkDerivation rec { - version = "0.5.5rc2"; + version = "0.5.7"; name = "qsyncthingtray-${version}"; src = fetchFromGitHub { owner = "sieren"; repo = "QSyncthingTray"; rev = "${version}"; - sha256 = "1x7j7ylgm4ih06m7gb5ls3c9bdjwbra675489caq2f04kgw4yxq2"; + sha256 = "0crrdpdmlc4ahkvp5znzc4zhfwsdih655q1kfjf0g231mmynxhvq"; }; buildInputs = [ qtbase qtwebengine ]; @@ -20,10 +20,6 @@ stdenv.mkDerivation rec { postInstall = '' mkdir -p $out/bin cp binary/QSyncthingTray $out/bin - cat > $out/bin/qt.conf <<EOF - [Paths] - Prefix = ${qtwebengine.out} - EOF ''; meta = with stdenv.lib; { diff --git a/pkgs/applications/misc/redshift-plasma-applet/default.nix b/pkgs/applications/misc/redshift-plasma-applet/default.nix index 3cf6f7d754be..fe09f7ff16ea 100644 --- a/pkgs/applications/misc/redshift-plasma-applet/default.nix +++ b/pkgs/applications/misc/redshift-plasma-applet/default.nix @@ -1,4 +1,4 @@ -{ stdenv, cmake, kde5, redshift, fetchFromGitHub, ... }: +{ stdenv, cmake, plasma-framework, redshift, fetchFromGitHub, }: let version = "1.0.17"; in @@ -26,7 +26,7 @@ stdenv.mkDerivation { buildInputs = [ cmake - kde5.plasma-framework + plasma-framework ]; diff --git a/pkgs/applications/misc/rsibreak/default.nix b/pkgs/applications/misc/rsibreak/default.nix deleted file mode 100644 index 42247572c246..000000000000 --- a/pkgs/applications/misc/rsibreak/default.nix +++ /dev/null @@ -1,23 +0,0 @@ -{ stdenv, fetchurl, automoc4, cmake, gettext, perl, pkgconfig -, kdelibs, kdebase_workspace }: - -let version = "0.11"; -in -stdenv.mkDerivation rec { - name = "rsibreak-${version}"; - - src = fetchurl { - url = "mirror://debian/pool/main/r/rsibreak/rsibreak_${version}.orig.tar.gz"; - sha256 = "0g27aswh8iz5v67v1wkjny4p100vs2gm0lw0qzfkg6sw1pb4i519"; - }; - - nativeBuildInputs = [ automoc4 cmake gettext perl pkgconfig ]; - - buildInputs = [ kdelibs kdebase_workspace ]; - - meta = { - homepage = http://userbase.kde.org/RSIBreak; # http://www.rsibreak.org/ is down since 2011 - description = "Utility to help prevent repetitive strain injury for KDE 4"; - inherit (kdelibs.meta) platforms maintainers; - }; -} diff --git a/pkgs/applications/misc/semnotes/default.nix b/pkgs/applications/misc/semnotes/default.nix deleted file mode 100644 index 52a575130c0e..000000000000 --- a/pkgs/applications/misc/semnotes/default.nix +++ /dev/null @@ -1,26 +0,0 @@ -{ stdenv, fetchurl, cmake, qt4, kdelibs, soprano, automoc4, phonon, shared_desktop_ontologies }: -stdenv.mkDerivation { - name = "semnotes-0.4.0-1"; - - src = fetchurl { - url = "mirror://sourceforge/semn/0.4.0/semnotes-0.4.0-1-src.tar.bz2"; - sha256 = "1zh5jfh7pyhyz5fbzcgzyckdg0ny7sf8s16yy6rjw9n021zz5i7m"; - }; - - buildInputs = [ cmake qt4 kdelibs automoc4 phonon soprano shared_desktop_ontologies ]; - - meta = with stdenv.lib; { - description = "Semantic note-taking tool for KDE based on Nepomuk-KDE"; - longDescription = '' - SemNotes links notes to the data that is available on the user's desktop. - The data stored about a note consists of: a title, content, tags, creation - and last modification time. The notes and all the information about them - are stored as RDF resources in the Nepomuk repository. They are - automatically linked to the resources they reference. - ''; - license = "GPL"; - homepage = http://smile.deri.ie/projects/semn; - maintainers = [ maintainers.phreedom ]; - platforms = platforms.linux; - }; -} \ No newline at end of file diff --git a/pkgs/applications/misc/spacefm/default.nix b/pkgs/applications/misc/spacefm/default.nix index 74466d667b3c..f4e1eef28363 100644 --- a/pkgs/applications/misc/spacefm/default.nix +++ b/pkgs/applications/misc/spacefm/default.nix @@ -1,6 +1,6 @@ { pkgs, fetchFromGitHub, stdenv, gtk3, udev, desktop_file_utils , shared_mime_info, intltool, pkgconfig, wrapGAppsHook, ffmpegthumbnailer -, jmtpfs, ifuse, lsof, udisks, hicolor_icon_theme, adwaita-icon-theme }: +, jmtpfs, ifuseSupport ? false, ifuse ? null, lsof, udisks, hicolor_icon_theme, adwaita-icon-theme }: stdenv.mkDerivation rec { name = "spacefm-${version}"; @@ -28,8 +28,10 @@ stdenv.mkDerivation rec { buildInputs = [ gtk3 udev desktop_file_utils shared_mime_info intltool pkgconfig - wrapGAppsHook ffmpegthumbnailer jmtpfs ifuse lsof udisks - ]; + wrapGAppsHook ffmpegthumbnailer jmtpfs lsof udisks + ] ++ (if ifuseSupport then [ ifuse ] else []); + # Introduced because ifuse doesn't build due to CVEs in libplist + # Revert when libplist builds again… meta = with stdenv.lib; { description = "A multi-panel tabbed file manager"; diff --git a/pkgs/applications/misc/styx/default.nix b/pkgs/applications/misc/styx/default.nix index 23761feb0ec2..8e3b0e747ae1 100644 --- a/pkgs/applications/misc/styx/default.nix +++ b/pkgs/applications/misc/styx/default.nix @@ -1,20 +1,22 @@ { stdenv, fetchFromGitHub, caddy, asciidoctor -, file, lessc, sass, multimarkdown }: +, file, lessc, sass, multimarkdown, linkchecker +, perlPackages, python27 }: stdenv.mkDerivation rec { name = "styx-${version}"; - version = "0.5.0"; + version = "0.6.0"; src = fetchFromGitHub { owner = "styx-static"; repo = "styx"; rev = "v${version}"; - sha256 = "0v36i40cwrajsd02xjfdldih5g493m28lhzgjg1gd3pwk2yd6rm1"; + sha256 = "1dl6zmic8bv17f3ib8by66c2fj7izlnv9dh2cfa2m0ipkxk930vk"; }; setSourceRoot = "cd styx-*/src; export sourceRoot=`pwd`"; server = "${caddy.bin}/bin/caddy"; + linkcheck = "${linkchecker}/bin/linkchecker"; nativeBuildInputs = [ asciidoctor ]; @@ -24,6 +26,8 @@ stdenv.mkDerivation rec { sass asciidoctor multimarkdown + perlPackages.ImageExifTool + (python27.withPackages (ps: [ ps.parsimonious ])) ]; outputs = [ "out" "lib" ]; @@ -34,16 +38,20 @@ stdenv.mkDerivation rec { mkdir -p $out/share/styx cp -r scaffold $out/share/styx - cp builder.nix $out/share/styx + cp -r nix $out/share/styx mkdir -p $out/share/doc/styx asciidoctor doc/index.adoc -o $out/share/doc/styx/index.html asciidoctor doc/styx-themes.adoc -o $out/share/doc/styx/styx-themes.html + asciidoctor doc/library.adoc -o $out/share/doc/styx/library.html + cp -r doc/highlight $out/share/doc/styx/ cp -r doc/imgs $out/share/doc/styx/ + cp -r tools $out/share substituteAllInPlace $out/bin/styx substituteAllInPlace $out/share/doc/styx/index.html substituteAllInPlace $out/share/doc/styx/styx-themes.html + substituteAllInPlace $out/share/doc/styx/library.html mkdir $lib cp -r lib/* $lib diff --git a/pkgs/applications/misc/styx/themes.nix b/pkgs/applications/misc/styx/themes.nix index 86904a73584d..e0bea3b23b6b 100644 --- a/pkgs/applications/misc/styx/themes.nix +++ b/pkgs/applications/misc/styx/themes.nix @@ -26,12 +26,12 @@ let in { - agency = mkThemeDrv { + agency = mkThemeDrv rec { themeName = "agency"; - version = "2017-01-17"; + version = "0.6.0"; src = { - rev = "3201f65841c9e7f97cc0ab0264cafb01b1620ed7"; - sha256 = "1b3547lzmhs1lmr9gln1yvh5xrsg92m8ngrjwf0ny91y81x04da6"; + rev = "v${version}"; + sha256 = "1i9bajzgmxd3ffvgic6wwnqijsgkfr2mfdijkgw9yf3bxcdq5cb6"; }; meta = { license = stdenv.lib.licenses.asl20; @@ -44,24 +44,24 @@ in }; }; - generic-templates = mkThemeDrv { + generic-templates = mkThemeDrv rec { themeName = "generic-templates"; - version = "2017-01-18"; + version = "0.6.0"; src = { - rev = "af7cd527584322d8731a306a137a1794b18ad71a"; - sha256 = "18zk4qihi8iw5dxkm9sf6cjai1mf22l6q1ykkrgaxjd5709is0li"; + rev = "v${version}"; + sha256 = "0wr2687pffczn0sns1xvqxr2gpf5v9j64zbj6q9f7km6bq0zpiiy"; }; meta = { license = stdenv.lib.licenses.mit; }; }; - hyde = mkThemeDrv { + hyde = mkThemeDrv rec { themeName = "hyde"; - version = "2017-01-17"; + version = "0.6.0"; src = { - rev = "22caf4edc738f399bb1013d8e968d111c7fa2a59"; - sha256 = "1a2j3m941vc2pyb1dz341ww5l3xblg527szfrfqh588lmsrkdqb6"; + rev = "v${version}"; + sha256 = "0yca76p297ymxd049fkcpw8bca5b9yvv36707z31jbijriy50zxb"; }; meta = { license = stdenv.lib.licenses.mit; @@ -72,12 +72,12 @@ in }; }; - orbit = mkThemeDrv { + orbit = mkThemeDrv rec { themeName = "orbit"; - version = "2017-01-17"; + version = "0.6.0"; src = { - rev = "b5896e25561f05e026b34d04ad95a647ddfc3d03"; - sha256 = "11p11f2d0swgjil5hfx153yw13p7pcp6fwx1bnvxrlfmmx9x2yj5"; + rev = "v${version}"; + sha256 = "0qdx1r7dcycr5hzl9ix70pl4xf0426ghpi1lgh61zdpdhcch0xfi"; }; meta = { license = stdenv.lib.licenses.cc-by-30; @@ -87,12 +87,12 @@ in }; }; - showcase = mkThemeDrv { + showcase = mkThemeDrv rec { themeName = "showcase"; - version = "2017-01-17"; + version = "0.6.0"; src = { - rev = "1b4b9d4af29c05aaadfd58233f0e3f61fac726af"; - sha256 = "0mwd1ycwvlv15y431336wwlv8mdv0ikz1aymh3yxhjyxqllc2snk"; + rev = "v${version}"; + sha256 = "1jfhw49yag8l1zr69l01y1p4p88waig3xv3b6c3mfxc8jrchp7pb"; }; meta = { license = stdenv.lib.licenses.mit; diff --git a/pkgs/applications/misc/super_user_spark/default.nix b/pkgs/applications/misc/super_user_spark/default.nix index 1b6167c61962..dd1218282d85 100644 --- a/pkgs/applications/misc/super_user_spark/default.nix +++ b/pkgs/applications/misc/super_user_spark/default.nix @@ -1,27 +1,28 @@ -{ mkDerivation, aeson, aeson-pretty, base, binary, bytestring -, directory, fetchgit, filepath, HTF, HUnit, mtl -, optparse-applicative, parsec, process, shelly, stdenv, text -, transformers, unix, zlib +{ mkDerivation, fetchgit, aeson, aeson-pretty, base, bytestring, directory +, filepath, hspec, hspec-core, HUnit, mtl, optparse-applicative +, parsec, process, pureMD5, QuickCheck, shelly, stdenv, text +, transformers, unix }: mkDerivation { pname = "super-user-spark"; - version = "0.2.0.3"; + version = "0.3.2.0-dev"; src = fetchgit { url = "https://github.com/NorfairKing/super-user-spark"; - sha256 = "1w9c2b1fxqxp2q5jxsvnrfqvyvpk8q70qqsgzshmghx0yylx9cns"; - rev = "a7d132f7631649c3a093ede286e66f78e9793fba"; + sha256 = "0akyc51bghzkk8j75n0i8v8rrsklidwvljhx3aibxfbkqp33372g"; + rev = "ab8635682d67842b9e6d909cf3c618014e4157f2"; }; - isLibrary = false; + isLibrary = true; isExecutable = true; - executableHaskellDepends = [ - aeson aeson-pretty base binary bytestring directory filepath HTF - mtl optparse-applicative parsec process shelly text transformers - unix zlib + libraryHaskellDepends = [ + aeson aeson-pretty base bytestring directory filepath mtl + optparse-applicative parsec process pureMD5 shelly text + transformers unix ]; + executableHaskellDepends = [ base ]; testHaskellDepends = [ - aeson aeson-pretty base binary bytestring directory filepath HTF - HUnit mtl optparse-applicative parsec process shelly text - transformers unix zlib + aeson aeson-pretty base bytestring directory filepath hspec + hspec-core HUnit mtl optparse-applicative parsec process pureMD5 + QuickCheck shelly text transformers unix ]; jailbreak = true; description = "Configure your dotfile deployment with a DSL"; diff --git a/pkgs/applications/misc/xdgmenumaker/default.nix b/pkgs/applications/misc/xdgmenumaker/default.nix index 8155c1ca4148..01782d18b12b 100644 --- a/pkgs/applications/misc/xdgmenumaker/default.nix +++ b/pkgs/applications/misc/xdgmenumaker/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { name = "xdgmenumaker-${version}"; - version = "1.1"; + version = "1.4"; src = fetchFromGitHub { owner = "gapan"; repo = "xdgmenumaker"; rev = version; - sha256 = "11mqafpgfnz0h0d6fxd1xsfsjxzg1abvwqgwy9jmm5xhcjx3c3l7"; + sha256 = "0i909dk9chdsc7njp5llgm5xlag4lr0nkxkwl1g5lf8cvdjrawh2"; }; nativeBuildInputs = [ diff --git a/pkgs/applications/misc/yakuake/3.0.nix b/pkgs/applications/misc/yakuake/3.0.nix deleted file mode 100644 index 8bce26deefc3..000000000000 --- a/pkgs/applications/misc/yakuake/3.0.nix +++ /dev/null @@ -1,63 +0,0 @@ -{ kdeDerivation -, lib -, fetchurl -, kdoctools -, kdeWrapper -, ecm -, karchive -, kcrash -, kdbusaddons -, ki18n -, kiconthemes -, knewstuff -, knotifications -, knotifyconfig -, konsole -, kparts -, kwindowsystem -}: - -let - unwrapped = let - pname = "yakuake"; - version = "3.0.2"; - in kdeDerivation rec { - name = "${pname}-${version}"; - - src = fetchurl { - url = "http://download.kde.org/stable/${pname}/${version}/src/${name}.tar.xz"; - sha256 = "0vcdji1k8d3pz7k6lkw8ighkj94zff2l2cf9v1avf83f4hjyfhg5"; - }; - - buildInputs = [ - karchive - kcrash - kdbusaddons - ki18n - kiconthemes - knewstuff - knotifications - knotifyconfig - kparts - kwindowsystem - ]; - - nativeBuildInputs = [ - ecm kdoctools - ]; - - meta = { - homepage = https://yakuake.kde.org; - description = "Quad-style terminal emulator for KDE"; - maintainers = with lib.maintainers; [ fridh ]; - }; - }; - - -in -kdeWrapper -{ - inherit unwrapped; - targets = [ "bin/yakuake" ]; - paths = [ konsole.unwrapped ]; -} diff --git a/pkgs/applications/misc/yakuake/default.nix b/pkgs/applications/misc/yakuake/default.nix index e48201b914c5..0d9f3834c615 100644 --- a/pkgs/applications/misc/yakuake/default.nix +++ b/pkgs/applications/misc/yakuake/default.nix @@ -1,28 +1,63 @@ -{ stdenv, fetchurl, automoc4, cmake, gettext, perl, pkgconfig -, kdelibs, konsole }: +{ kdeDerivation +, lib +, fetchurl +, kdoctools +, kdeWrapper +, extra-cmake-modules +, karchive +, kcrash +, kdbusaddons +, ki18n +, kiconthemes +, knewstuff +, knotifications +, knotifyconfig +, konsole +, kparts +, kwindowsystem +}: let - pname = "yakuake"; - version = "2.9.9"; -in -stdenv.mkDerivation { - name = "${pname}-${version}"; - - src = fetchurl { - url = "mirror://kde/stable/${pname}/${version}/src/${pname}-${version}.tar.xz"; - sha256 = "0e0e4994c568f8091c9424e4aab35645436a9ff341c00b1cd1eab0ada0bf61ce"; - }; + unwrapped = let + pname = "yakuake"; + version = "3.0.2"; + in kdeDerivation rec { + name = "${pname}-${version}"; - buildInputs = [ kdelibs ]; + src = fetchurl { + url = "http://download.kde.org/stable/${pname}/${version}/src/${name}.tar.xz"; + sha256 = "0vcdji1k8d3pz7k6lkw8ighkj94zff2l2cf9v1avf83f4hjyfhg5"; + }; - nativeBuildInputs = [ automoc4 cmake gettext perl pkgconfig ]; + buildInputs = [ + karchive + kcrash + kdbusaddons + ki18n + kiconthemes + knewstuff + knotifications + knotifyconfig + kparts + kwindowsystem + ]; - propagatedUserEnvPkgs = [ konsole ]; + nativeBuildInputs = [ + extra-cmake-modules kdoctools + ]; - meta = { - homepage = http://yakuake.kde.org; - description = "Quad-style terminal emulator for KDE"; - inherit (kdelibs.meta) platforms; - maintainers = [ stdenv.lib.maintainers.urkud ]; + meta = { + homepage = https://yakuake.kde.org; + description = "Quad-style terminal emulator for KDE"; + maintainers = with lib.maintainers; [ fridh ]; + }; }; + + +in +kdeWrapper +{ + inherit unwrapped; + targets = [ "bin/yakuake" ]; + paths = [ konsole.unwrapped ]; } diff --git a/pkgs/applications/networking/browsers/firefox-bin/default.nix b/pkgs/applications/networking/browsers/firefox-bin/default.nix index 80197999f5a3..01cd7a1df380 100644 --- a/pkgs/applications/networking/browsers/firefox-bin/default.nix +++ b/pkgs/applications/networking/browsers/firefox-bin/default.nix @@ -12,7 +12,7 @@ , gdk_pixbuf , glib , glibc -, gst_plugins_base +, gst-plugins-base , gstreamer , gtk2 , gtk3 @@ -94,7 +94,7 @@ stdenv.mkDerivation { gdk_pixbuf glib glibc - gst_plugins_base + gst-plugins-base gstreamer gtk2 gtk3 diff --git a/pkgs/applications/networking/browsers/firefox/default.nix b/pkgs/applications/networking/browsers/firefox/default.nix index a01cde4d6de6..f2da6257efd1 100644 --- a/pkgs/applications/networking/browsers/firefox/default.nix +++ b/pkgs/applications/networking/browsers/firefox/default.nix @@ -3,7 +3,7 @@ , freetype, fontconfig, file, alsaLib, nspr, nss, libnotify , yasm, mesa, sqlite, unzip, makeWrapper , hunspell, libevent, libstartup_notification, libvpx -, cairo, gstreamer, gst_plugins_base, icu, libpng, jemalloc, libpulseaudio +, cairo, gstreamer, gst-plugins-base, icu, libpng, jemalloc, libpulseaudio , autoconf213, which , writeScript, xidel, common-updater-scripts, coreutils, gnused, gnugrep, curl , enableGTK3 ? false @@ -42,7 +42,7 @@ common = { pname, version, sha512, updateScript }: stdenv.mkDerivation rec { libpulseaudio # only headers are needed ] ++ lib.optional enableGTK3 gtk3 - ++ lib.optionals (!passthru.ffmpegSupport) [ gstreamer gst_plugins_base ]; + ++ lib.optionals (!passthru.ffmpegSupport) [ gstreamer gst-plugins-base ]; nativeBuildInputs = [ autoconf213 which gnused ]; diff --git a/pkgs/applications/networking/browsers/kwebkitpart/CVE-2014-8600.diff b/pkgs/applications/networking/browsers/kwebkitpart/CVE-2014-8600.diff deleted file mode 100644 index 0c65e68f2167..000000000000 --- a/pkgs/applications/networking/browsers/kwebkitpart/CVE-2014-8600.diff +++ /dev/null @@ -1,33 +0,0 @@ ---- a/src/webpage.cpp -+++ b/src/webpage.cpp -@@ -226,23 +226,26 @@ - doc += QL1S( "<h3>" ); - doc += i18n( "Details of the Request:" ); - doc += QL1S( "</h3><ul><li>" ); -- doc += i18n( "URL: %1", reqUrl.url() ); -+ // escape URL twice: once for i18n, and once for HTML. -+ doc += i18n( "URL: %1", Qt::escape( Qt::escape( reqUrl.prettyUrl() ) ) ); - doc += QL1S( "</li><li>" ); - - const QString protocol (reqUrl.protocol()); - if ( !protocol.isNull() ) { -- doc += i18n( "Protocol: %1", protocol ); -+ // escape protocol twice: once for i18n, and once for HTML. -+ doc += i18n( "Protocol: %1", Qt::escape( Qt::escape( protocol ) ) ); - doc += QL1S( "</li><li>" ); - } - - doc += i18n( "Date and Time: %1", - KGlobal::locale()->formatDateTime(QDateTime::currentDateTime(), KLocale::LongDate) ); - doc += QL1S( "</li><li>" ); -- doc += i18n( "Additional Information: %1" , text ); -+ // escape text twice: once for i18n, and once for HTML. -+ doc += i18n( "Additional Information: %1", Qt::escape( Qt::escape( text ) ) ); - doc += QL1S( "</li></ul><h3>" ); - doc += i18n( "Description:" ); - doc += QL1S( "</h3><p>" ); -- doc += description; -+ doc += Qt::escape( description ); - doc += QL1S( "</p>" ); - - if ( causes.count() ) { diff --git a/pkgs/applications/networking/browsers/kwebkitpart/default.nix b/pkgs/applications/networking/browsers/kwebkitpart/default.nix deleted file mode 100644 index 1cbffdd25446..000000000000 --- a/pkgs/applications/networking/browsers/kwebkitpart/default.nix +++ /dev/null @@ -1,25 +0,0 @@ -{ stdenv, fetchgit, automoc4, cmake, perl, pkgconfig, kdelibs }: - -stdenv.mkDerivation rec { - name = "kwebkitpart-${version}"; - version = "1.3.3"; - - src = fetchgit { - url = git://anongit.kde.org/kwebkitpart; - rev = "refs/tags/v${version}"; - sha256 = "13vfv88njml7x67a37ymmlv9qs30fkmvkq0278lp7llmvp5qnxcj"; - }; - - patches = [ ./CVE-2014-8600.diff ]; - - buildInputs = [ kdelibs ]; - - nativeBuildInputs = [ automoc4 cmake perl pkgconfig ]; - - meta = with stdenv.lib; { - platforms = platforms.linux; - maintainers = [ maintainers.phreedom ]; - description = "A WebKit KPart for Konqueror, Akregator and other KDE applications"; - homepage = https://projects.kde.org/projects/extragear/base/kwebkitpart; - }; -} diff --git a/pkgs/applications/networking/browsers/luakit/default.nix b/pkgs/applications/networking/browsers/luakit/default.nix deleted file mode 100644 index 163eb8cf5890..000000000000 --- a/pkgs/applications/networking/browsers/luakit/default.nix +++ /dev/null @@ -1,55 +0,0 @@ -{ stdenv , fetchurl , git , glib_networking , gsettings_desktop_schemas , gtk, -help2man , libunique , lua5 , luafilesystem , luajit , luasqlite3, makeWrapper, -pkgconfig , sqlite , webkit }: - -let - lualibs = [ luafilesystem luasqlite3 ]; - getPath = lib : type : "${lib}/lib/lua/${lua5.luaversion}/?.${type};${lib}/share/lua/${lua5.luaversion}/?.${type}"; - getLuaPath = lib : getPath lib "lua"; - getLuaCPath = lib : getPath lib "so"; - luaPath = stdenv.lib.concatStringsSep ";" (map getLuaPath lualibs); - luaCPath = stdenv.lib.concatStringsSep ";" (map getLuaCPath lualibs); -in -stdenv.mkDerivation { - - name = "luakit-2012.09.13"; - - meta = with stdenv.lib; { - description = "Fast, small, webkit based browser framework extensible in Lua"; - homepage = "http://luakit.org"; - license = licenses.gpl3; - maintainers = with maintainers; [ matthiasbeyer ]; - platforms = platforms.linux; # I only tested linux - }; - - src = fetchurl { - url = "https://github.com/mason-larobina/luakit/archive/2012.09.13-r1.tar.gz"; - sha256 = "067g3bp5w20jypc8rx54dpbn3ysbgxzchgpq7sld5yh2z36s1l52"; - }; - - buildInputs = [ git gsettings_desktop_schemas gtk help2man libunique lua5 - luafilesystem luajit luasqlite3 makeWrapper pkgconfig sqlite webkit ]; - - postPatch = '' - sed -i -e "s/DESTDIR/INSTALLDIR/" ./Makefile - sed -i -e "s|/etc/xdg/luakit/|$out/etc/xdg/luakit/|" lib/lousy/util.lua - patchShebangs ./build-utils - ''; - - buildPhase = '' - make DEVELOPMENT_PATHS=0 USE_LUAJIT=1 INSTALLDIR=$out DESTDIR=$out PREFIX=$out USE_GTK3=1 - ''; - - installPhase = let - luaKitPath = "$out/share/luakit/lib/?/init.lua;$out/share/luakit/lib/?.lua"; - in '' - make DEVELOPMENT_PATHS=0 INSTALLDIR=$out DESTDIR=$out PREFIX=$out USE_GTK3=1 install - wrapProgram $out/bin/luakit \ - --prefix GIO_EXTRA_MODULES : "${glib_networking.out}/lib/gio/modules" \ - --prefix XDG_DATA_DIRS : "${gsettings_desktop_schemas}/share:$out/usr/share/:$out/share/:$GSETTINGS_SCHEMAS_PATH" \ - --prefix XDG_CONFIG_DIRS : "$out/etc/xdg" \ - --set LUA_PATH '${luaKitPath};${luaPath};' \ - --set LUA_CPATH '${luaCPath};' - ''; - -} diff --git a/pkgs/applications/networking/browsers/lynx/default.nix b/pkgs/applications/networking/browsers/lynx/default.nix index 06c00bec7552..fb4b33ef71ab 100644 --- a/pkgs/applications/networking/browsers/lynx/default.nix +++ b/pkgs/applications/networking/browsers/lynx/default.nix @@ -6,26 +6,25 @@ assert sslSupport -> openssl != null; stdenv.mkDerivation rec { name = "lynx-${version}"; - version = "2.8.8rel.2"; - + version = "2.8.9dev.11"; + src = fetchurl { url = "http://invisible-mirror.net/archives/lynx/tarballs/lynx${version}.tar.bz2"; - sha256 = "1rxysl08acqll5b87368f04kckl8sggy1qhnq59gsxyny1ffg039"; + sha256 = "1cqm1i7d209brkrpzaqqf2x951ra3l67dw8x9yg10vz7rpr9441a"; }; - + configureFlags = [] ++ stdenv.lib.optionals sslSupport [ "--with-ssl=${openssl.dev}" ]; - + buildInputs = [ ncurses gzip ]; - nativeBuildInputs = [ ncurses ]; crossAttrs = { configureFlags = configureFlags ++ [ "--enable-widec" ]; }; - meta = { + meta = with stdenv.lib; { homepage = http://lynx.isc.org/; description = "A text-mode web browser"; - platforms = stdenv.lib.platforms.unix; + platforms = platforms.unix; }; } diff --git a/pkgs/applications/networking/browsers/opera/default.nix b/pkgs/applications/networking/browsers/opera/default.nix index 7e9d4cd50b4a..47e82d06e0eb 100644 --- a/pkgs/applications/networking/browsers/opera/default.nix +++ b/pkgs/applications/networking/browsers/opera/default.nix @@ -37,7 +37,7 @@ let mirror = https://get.geo.opera.com/pub/opera/desktop; - version = "42.0.2393.517"; + version = "43.0.2442.991"; rpath = stdenv.lib.makeLibraryPath [ @@ -91,12 +91,12 @@ in stdenv.mkDerivation { if stdenv.system == "i686-linux" then fetchurl { url = "${mirror}/${version}/linux/opera-stable_${version}_i386.deb"; - sha256 = "1zdhg6lrnpn8f4rdibnagj3ps3i8s9ygm4dpj5h605rqk24xxpvs"; + sha256 = "0gd30b5gs2n4ypyn2ky2dlz648akmss2kixb8dqsy4yfd0mz7xqr"; } else if stdenv.system == "x86_64-linux" then fetchurl { url = "${mirror}/${version}/linux/opera-stable_${version}_amd64.deb"; - sha256 = "04yklvxprl7kcnl43fmvk1qfj5ifvivj715n26ylzcf29pvcy1mp"; + sha256 = "1pj2d3zhzyavv2gj3v5w07m14679k2vlbfk6sd9bjdy6g7fb5f7x"; } else throw "Opera is not supported on ${stdenv.system} (only i686-linux and x86_64 linux are supported)"; diff --git a/pkgs/applications/networking/browsers/palemoon/default.nix b/pkgs/applications/networking/browsers/palemoon/default.nix index de21c37bc79e..73a828413600 100644 --- a/pkgs/applications/networking/browsers/palemoon/default.nix +++ b/pkgs/applications/networking/browsers/palemoon/default.nix @@ -1,7 +1,7 @@ { stdenv, fetchFromGitHub, makeDesktopItem , pkgconfig, autoconf213, alsaLib, bzip2, cairo , dbus, dbus_glib, file, fontconfig, freetype -, gstreamer, gst_plugins_base, gst_all_1 +, gstreamer, gst-plugins-base, gst_all_1 , gtk2, hunspell, icu, libevent, libjpeg, libnotify , libstartup_notification, libvpx, makeWrapper, mesa , nspr, nss, pango, perl, python, libpulseaudio, sqlite @@ -39,7 +39,7 @@ stdenv.mkDerivation rec { buildInputs = [ alsaLib bzip2 cairo dbus dbus_glib file fontconfig freetype - gst_plugins_base gstreamer gst_all_1.gst-plugins-base gtk2 + gst-plugins-base gstreamer gst_all_1.gst-plugins-base gtk2 hunspell icu libevent libjpeg libnotify libstartup_notification libvpx makeWrapper mesa nspr nss pango perl pkgconfig python libpulseaudio sqlite unzip which yasm zip zlib diff --git a/pkgs/applications/networking/browsers/rekonq/default.nix b/pkgs/applications/networking/browsers/rekonq/default.nix deleted file mode 100644 index 70aa648ccc50..000000000000 --- a/pkgs/applications/networking/browsers/rekonq/default.nix +++ /dev/null @@ -1,26 +0,0 @@ -{ stdenv, fetchurl, automoc4, cmake, gettext, perl, pkgconfig -, kde4, shared_desktop_ontologies, qca2, qoauth }: - -assert builtins.compareVersions "4.8.3" kde4.release != 1; # https://bugs.kde.org/show_bug.cgi?id=306077 - -stdenv.mkDerivation rec { - name = "rekonq-2.4.2"; # >=1.80 need kde >=4.9.0 - - src = fetchurl { - url = "mirror://sourceforge/rekonq/${name}.tar.xz"; - sha256 = "09jihyf4xl7bwfwahwwbx6f11h3zqljccchnpl4mijljylr5p079"; - }; - - buildInputs = [ kde4.kdelibs qca2 qoauth ]; - - nativeBuildInputs = [ - automoc4 cmake gettext perl pkgconfig shared_desktop_ontologies - ]; - - meta = with stdenv.lib; { - platforms = platforms.linux; - maintainers = [ maintainers.urkud ]; - description = "KDE Webkit browser"; - homepage = https://rekonq.kde.org/; - }; -} diff --git a/pkgs/applications/networking/browsers/vivaldi/default.nix b/pkgs/applications/networking/browsers/vivaldi/default.nix index 0531a58f0a23..ab010653c644 100644 --- a/pkgs/applications/networking/browsers/vivaldi/default.nix +++ b/pkgs/applications/networking/browsers/vivaldi/default.nix @@ -3,7 +3,7 @@ , alsaLib, dbus_libs, cups, libexif, ffmpeg, systemd , freetype, fontconfig, libXft, libXrender, libxcb, expat, libXau, libXdmcp , libuuid, xz -, gstreamer, gst_plugins_base, libxml2 +, gstreamer, gst-plugins-base, libxml2 , glib, gtk2, pango, gdk_pixbuf, cairo, atk, gnome3 , nss, nspr , patchelf @@ -41,7 +41,7 @@ in stdenv.mkDerivation rec { libXi libXft libXcursor libXfixes libXScrnSaver libXcomposite libXdamage libXtst libXrandr atk alsaLib dbus_libs cups gtk2 gdk_pixbuf libexif ffmpeg systemd freetype fontconfig libXrender libuuid expat glib nss nspr - gstreamer libxml2 gst_plugins_base pango cairo gnome3.gconf + gstreamer libxml2 gst-plugins-base pango cairo gnome3.gconf patchelf ]; diff --git a/pkgs/applications/networking/cluster/terragrunt/default.nix b/pkgs/applications/networking/cluster/terragrunt/default.nix index a90cd832e115..b7845b177060 100644 --- a/pkgs/applications/networking/cluster/terragrunt/default.nix +++ b/pkgs/applications/networking/cluster/terragrunt/default.nix @@ -2,7 +2,7 @@ buildGoPackage rec { name = "terragrunt-${version}"; - version = "0.10.2"; + version = "0.10.3"; goPackagePath = "github.com/gruntwork-io/terragrunt"; @@ -10,7 +10,7 @@ buildGoPackage rec { rev = "v${version}"; owner = "gruntwork-io"; repo = "terragrunt"; - sha256 = "0xbg8kirdd4na7g1fk2xwh3rk07jrlmral6yhzzblpdyr4v26vlg"; + sha256 = "1vyyal4m8qwmlsvd2hriwvgly17iava0siyx7gdhy6dcs8ivc4ng"; }; goDeps = ./deps.nix; diff --git a/pkgs/applications/networking/cluster/terragrunt/deps.nix b/pkgs/applications/networking/cluster/terragrunt/deps.nix index 6542e6b5beae..dcc8ee66fb42 100644 --- a/pkgs/applications/networking/cluster/terragrunt/deps.nix +++ b/pkgs/applications/networking/cluster/terragrunt/deps.nix @@ -5,8 +5,8 @@ fetch = { type = "git"; url = "https://github.com/aws/aws-sdk-go"; - rev = "3d7773ac930d57ef4a59e0d10c5f65a0cfa5acd6"; - sha256 = "0jgyybih4vhlja76x5wjsvdbvq3v14yllzfi36f2527bby18g1hc"; + rev = "9350193373dc6d4bb4d6af55675c11ca7fc4230c"; + sha256 = "0n9b1szwf69mjmf7dgl1b2hv3aqjhih2pvfcjxnv1xgbigm821w2"; }; } { diff --git a/pkgs/applications/networking/instant-messengers/baresip/default.nix b/pkgs/applications/networking/instant-messengers/baresip/default.nix index 3ce638e6b58a..2b831cdcaaf8 100644 --- a/pkgs/applications/networking/instant-messengers/baresip/default.nix +++ b/pkgs/applications/networking/instant-messengers/baresip/default.nix @@ -1,6 +1,6 @@ {stdenv, fetchurl, zlib, openssl, libre, librem, pkgconfig -, cairo, mpg123, gstreamer, gst_ffmpeg, gst_plugins_base, gst_plugins_bad -, gst_plugins_good, alsaLib, SDL, libv4l, celt, libsndfile, srtp, ffmpeg +, cairo, mpg123, gstreamer, gst-ffmpeg, gst-plugins-base, gst-plugins-bad +, gst-plugins-good, alsaLib, SDL, libv4l, celt, libsndfile, srtp, ffmpeg , gsm, speex, portaudio, spandsp, libuuid, ccache }: stdenv.mkDerivation rec { @@ -11,7 +11,7 @@ stdenv.mkDerivation rec { sha256 = "0dhlgjkqn7jkd1pmdyid41c829clzmi5kczjdwxzh5ygn95lydjc"; }; buildInputs = [zlib openssl libre librem pkgconfig - cairo mpg123 gstreamer gst_ffmpeg gst_plugins_base gst_plugins_bad gst_plugins_good + cairo mpg123 gstreamer gst-ffmpeg gst-plugins-base gst-plugins-bad gst-plugins-good alsaLib SDL libv4l celt libsndfile srtp ffmpeg gsm speex portaudio spandsp libuuid ccache ]; diff --git a/pkgs/applications/networking/instant-messengers/choqok/default.nix b/pkgs/applications/networking/instant-messengers/choqok/default.nix deleted file mode 100644 index a50779f53dd0..000000000000 --- a/pkgs/applications/networking/instant-messengers/choqok/default.nix +++ /dev/null @@ -1,26 +0,0 @@ -{ stdenv, fetchurl, cmake, qt4, perl, gettext, libXScrnSaver -, kdelibs, kdepimlibs, automoc4, pkgconfig, phonon, qca2, qjson, qoauth }: - -let - pn = "choqok"; - v = "1.5"; -in - -stdenv.mkDerivation rec { - name = "${pn}-${v}"; - - src = fetchurl { - url = "mirror://sourceforge/project/choqok/Choqok/choqok-1.5.tar.xz"; - sha256 = "5cb97ac4cdf9db4699bb7445a9411393073d213fea649ab0713f659f1308efe4"; - }; - - buildInputs = [ cmake qt4 perl gettext libXScrnSaver kdelibs kdepimlibs - automoc4 pkgconfig phonon qca2 qjson qoauth ]; - - meta = with stdenv.lib; { - description = "A KDE microblogging client"; - repositories.git = git://anongit.kde.org/choqok; - license = "GPL"; - inherit (kdelibs.meta) maintainers platforms; - }; -} diff --git a/pkgs/applications/networking/instant-messengers/gajim/default.nix b/pkgs/applications/networking/instant-messengers/gajim/default.nix index d78bd759ea6e..ae318e644243 100644 --- a/pkgs/applications/networking/instant-messengers/gajim/default.nix +++ b/pkgs/applications/networking/instant-messengers/gajim/default.nix @@ -4,7 +4,7 @@ # Test requirements , xvfb_run -, enableJingle ? true, farstream ? null, gst_plugins_bad ? null +, enableJingle ? true, farstream ? null, gst-plugins-bad ? null , libnice ? null , enableE2E ? true , enableRST ? true @@ -14,7 +14,7 @@ , extraPythonPackages ? pkgs: [] }: -assert enableJingle -> farstream != null && gst_plugins_bad != null +assert enableJingle -> farstream != null && gst-plugins-bad != null && libnice != null; assert enableE2E -> pythonPackages.pycrypto != null; assert enableRST -> pythonPackages.docutils != null; @@ -77,7 +77,7 @@ stdenv.mkDerivation rec { buildInputs = [ python libX11 - ] ++ optionals enableJingle [ farstream gst_plugins_bad libnice ]; + ] ++ optionals enableJingle [ farstream gst-plugins-bad libnice ]; nativeBuildInputs = [ autoreconfHook pythonPackages.wrapPython intltool pkgconfig diff --git a/pkgs/applications/networking/instant-messengers/telepathy/kde/default.nix b/pkgs/applications/networking/instant-messengers/telepathy/kde/default.nix index 84ced8f62c6e..592fc2b5934d 100644 --- a/pkgs/applications/networking/instant-messengers/telepathy/kde/default.nix +++ b/pkgs/applications/networking/instant-messengers/telepathy/kde/default.nix @@ -1,6 +1,6 @@ { stdenv, fetchurl, fetchgit, automoc4, cmake, gettext, perl, pkgconfig -, telepathy_qt, kdelibs, kde_workspace, dbus_glib, dbus_libs, farstream -, qt_gstreamer1, telepathy_glib, telepathy_logger +, telepathy_qt, kdelibs4, kde_workspace, dbus_glib, dbus_libs, farstream +, qt-gstreamer1, telepathy_glib, telepathy_logger , qjson, flex, bison, qca2 }: let @@ -21,10 +21,10 @@ let extraBuildInputs = { auth_handler = [ qjson qca2 ]; - call_ui = [ qt_gstreamer1 telepathy_glib farstream ]; + call_ui = [ qt-gstreamer1 telepathy_glib farstream ]; contact_applet = [ kde_workspace ]; - telepathy_logger_qt = [ telepathy_logger qt_gstreamer1 ]; - text_ui = [ qt_gstreamer1 telepathy_logger qjson ]; + telepathy_logger_qt = [ telepathy_logger qt-gstreamer1 ]; + text_ui = [ qt-gstreamer1 telepathy_logger qjson ]; common_internals = [ telepathy_qt ]; }; @@ -48,12 +48,12 @@ let nativeBuildInputs = [ automoc4 cmake gettext perl pkgconfig ] ++ (stdenv.lib.attrByPath [ key ] [] extraNativeBuildInputs); - buildInputs = [ kdelibs telepathy_qt ] + buildInputs = [ kdelibs4 telepathy_qt ] ++ stdenv.lib.optional (name != "ktp-common-internals") ktp.common_internals ++ (stdenv.lib.attrByPath [ key ] [] extraBuildInputs); meta = { - inherit (kdelibs.meta) platforms; + inherit (kdelibs4.meta) platforms; maintainers = [ stdenv.lib.maintainers.urkud ]; }; } diff --git a/pkgs/applications/networking/instant-messengers/utox/default.nix b/pkgs/applications/networking/instant-messengers/utox/default.nix index ccb4244d6264..d74d3fe38657 100644 --- a/pkgs/applications/networking/instant-messengers/utox/default.nix +++ b/pkgs/applications/networking/instant-messengers/utox/default.nix @@ -3,14 +3,14 @@ stdenv.mkDerivation rec { name = "utox-${version}"; - # > 0.13 should have unit tests and dbus support - version = "0.13.0"; + # >= 0.14 should have unit tests and dbus support + version = "0.13.1"; src = fetchFromGitHub { owner = "uTox"; repo = "uTox"; rev = "v${version}"; - sha256 = "0hdcbhmjwxhs3mr72w6x6yfnk8b0drsqyj40grg8dc0gb1x8y82j"; + sha256 = "07aa92isknxf7531jr9kgk89wl5rvv34jrvir043fs9xvim5zq99"; }; buildInputs = [ @@ -23,10 +23,15 @@ stdenv.mkDerivation rec { cmake git pkgconfig ]; + cmakeFlags = [ + "-DENABLE_UPDATER=OFF" + ]; + doCheck = false; meta = with stdenv.lib; { description = "Lightweight Tox client"; + homepage = https://github.com/uTox/uTox; license = licenses.gpl3; maintainers = with maintainers; [ domenkozar jgeerds ]; platforms = platforms.all; diff --git a/pkgs/applications/networking/instant-messengers/zoom-us/default.nix b/pkgs/applications/networking/instant-messengers/zoom-us/default.nix index 85dbd5f8d8f7..067b1c7884a7 100644 --- a/pkgs/applications/networking/instant-messengers/zoom-us/default.nix +++ b/pkgs/applications/networking/instant-messengers/zoom-us/default.nix @@ -2,7 +2,7 @@ , fetchurl , gcc , glib -, gst_plugins_base +, gst-plugins-base , gstreamer , icu , libpulseaudio @@ -39,7 +39,7 @@ stdenv.mkDerivation rec { alsaLib gcc.cc glib - gst_plugins_base + gst-plugins-base gstreamer icu libpulseaudio diff --git a/pkgs/applications/networking/irc/konversation/1.6.nix b/pkgs/applications/networking/irc/konversation/1.6.nix deleted file mode 100644 index 9724ae5f4bf0..000000000000 --- a/pkgs/applications/networking/irc/konversation/1.6.nix +++ /dev/null @@ -1,82 +0,0 @@ -{ kdeDerivation -, lib -, fetchurl -, ecm -, kbookmarks -, karchive -, kconfig -, kconfigwidgets -, kcoreaddons -, kdbusaddons -, kdeWrapper -, kdoctools -, kemoticons -, kglobalaccel -, ki18n -, kiconthemes -, kidletime -, kitemviews -, knotifications -, knotifyconfig -, kio -, kparts -, kwallet -, makeQtWrapper -, solid -, sonnet -, phonon -}: - -let - unwrapped = let - pname = "konversation"; - version = "1.6.2"; - in kdeDerivation rec { - name = "${pname}-${version}"; - - src = fetchurl { - url = "mirror://kde/stable/${pname}/${version}/src/${name}.tar.xz"; - sha256 = "1798sslwz7a3h1v524ra33p0j5iqvcg0v1insyvb5qp4kv11slmn"; - }; - - buildInputs = [ - kbookmarks - karchive - kconfig - kconfigwidgets - kcoreaddons - kdbusaddons - kdoctools - kemoticons - kglobalaccel - ki18n - kiconthemes - kidletime - kitemviews - knotifications - knotifyconfig - kio - kparts - kwallet - solid - sonnet - phonon - ]; - - nativeBuildInputs = [ - ecm - kdoctools - ]; - - meta = { - description = "Integrated IRC client for KDE"; - license = with lib.licenses; [ gpl2 ]; - maintainers = with lib.maintainers; [ fridh ]; - homepage = https://konversation.kde.org; - }; - }; -in kdeWrapper { - inherit unwrapped; - targets = [ "bin/konversation" ]; -} - diff --git a/pkgs/applications/networking/irc/konversation/default.nix b/pkgs/applications/networking/irc/konversation/default.nix index cbe4e3be28d4..6f4bc2af79f2 100644 --- a/pkgs/applications/networking/irc/konversation/default.nix +++ b/pkgs/applications/networking/irc/konversation/default.nix @@ -1,26 +1,82 @@ -{ stdenv, fetchurl, cmake, qt4, perl, gettext, libXScrnSaver -, kdelibs, kdepimlibs, automoc4, phonon, qca2}: +{ kdeDerivation +, lib +, fetchurl +, extra-cmake-modules +, kbookmarks +, karchive +, kconfig +, kconfigwidgets +, kcoreaddons +, kdbusaddons +, kdeWrapper +, kdoctools +, kemoticons +, kglobalaccel +, ki18n +, kiconthemes +, kidletime +, kitemviews +, knotifications +, knotifyconfig +, kio +, kparts +, kwallet +, makeQtWrapper +, solid +, sonnet +, phonon +}: let - pn = "konversation"; - v = "1.5.1"; -in + unwrapped = let + pname = "konversation"; + version = "1.6.2"; + in kdeDerivation rec { + name = "${pname}-${version}"; -stdenv.mkDerivation rec { - name = "${pn}-${v}"; + src = fetchurl { + url = "mirror://kde/stable/${pname}/${version}/src/${name}.tar.xz"; + sha256 = "1798sslwz7a3h1v524ra33p0j5iqvcg0v1insyvb5qp4kv11slmn"; + }; - src = fetchurl { - url = "mirror://kde/stable/${pn}/${v}/src/${name}.tar.xz"; - sha256 = "11hrjrq4r6v1v14ybx9llgzmrl3a45z26n292nb0q887rg1qv0wp"; - }; + buildInputs = [ + kbookmarks + karchive + kconfig + kconfigwidgets + kcoreaddons + kdbusaddons + kdoctools + kemoticons + kglobalaccel + ki18n + kiconthemes + kidletime + kitemviews + knotifications + knotifyconfig + kio + kparts + kwallet + solid + sonnet + phonon + ]; - buildInputs = [ cmake qt4 perl gettext libXScrnSaver kdelibs kdepimlibs - automoc4 phonon qca2 ]; + nativeBuildInputs = [ + extra-cmake-modules + kdoctools + ]; - meta = with stdenv.lib; { - description = "Integrated IRC client for KDE"; - repositories.git = git://anongit.kde.org/konversation; - license = "GPL"; - inherit (kdelibs.meta) maintainers platforms; + meta = { + description = "Integrated IRC client for KDE"; + license = with lib.licenses; [ gpl2 ]; + maintainers = with lib.maintainers; [ fridh ]; + homepage = https://konversation.kde.org; + }; }; +in kdeWrapper { + inherit unwrapped; + targets = [ "bin/konversation" ]; } + diff --git a/pkgs/applications/networking/irc/kvirc/default.nix b/pkgs/applications/networking/irc/kvirc/default.nix deleted file mode 100644 index f4b451e66e07..000000000000 --- a/pkgs/applications/networking/irc/kvirc/default.nix +++ /dev/null @@ -1,24 +0,0 @@ -{ stdenv, fetchurl, cmake, qt4, perl, gettext, kdelibs, openssl, zlib}: - -let - pn = "kvirc"; - v = "4.2.0"; -in - -stdenv.mkDerivation { - name = "${pn}-${v}"; - - src = fetchurl { - url = "ftp://ftp.kvirc.de/pub/${pn}/${v}/source/${pn}-${v}.tar.bz2"; - sha256 = "9a547d52d804e39c9635c8dc58bccaf4d34341ef16a9a652a5eb5568d4d762cb"; - }; - - buildInputs = [ cmake qt4 perl gettext kdelibs openssl zlib ]; - - meta = with stdenv.lib; { - description = "Graphic IRC client with Qt"; - license = licenses.gpl3; - homepage = http://www.kvirc.net/; - platforms = platforms.linux; - }; -} diff --git a/pkgs/applications/networking/irc/quassel/default.nix b/pkgs/applications/networking/irc/quassel/default.nix index f48309d0b049..d631f4aa2146 100644 --- a/pkgs/applications/networking/irc/quassel/default.nix +++ b/pkgs/applications/networking/irc/quassel/default.nix @@ -1,15 +1,26 @@ { monolithic ? true # build monolithic Quassel , daemon ? false # build Quassel daemon , client ? false # build Quassel client -, previews ? false # enable webpage previews on hovering over URLs , tag ? "" # tag added to the package name -, withKDE ? stdenv.isLinux # enable KDE integration -, kdelibs ? null , static ? false # link statically -, stdenv, fetchurl, cmake, makeWrapper, qt, automoc4, phonon, dconf, qca2 }: +, stdenv, fetchurl, cmake, makeWrapper, dconf +, qtbase, qtscript +, phonon, libdbusmenu, qca-qt5 + +, withKDE ? stdenv.isLinux # enable KDE integration +, extra-cmake-modules +, kconfigwidgets +, kcoreaddons +, knotifications +, knotifyconfig +, ktextwidgets +, kwidgetsaddons +, kxmlgui +}: -let buildClient = monolithic || client; +let + buildClient = monolithic || client; buildCore = monolithic || daemon; in @@ -17,7 +28,6 @@ assert stdenv.isLinux; assert monolithic -> !client && !daemon; assert client || daemon -> !monolithic; -assert withKDE -> kdelibs != null; assert !buildClient -> !withKDE; # KDE is used by the client only let @@ -31,21 +41,28 @@ in with stdenv; mkDerivation rec { enableParallelBuilding = true; - buildInputs = - [ cmake makeWrapper qt ] - ++ lib.optionals buildCore [qca2] - ++ lib.optionals withKDE [automoc4 kdelibs phonon]; + # Prevent ``undefined reference to `qt_version_tag''' in SSL check + NIX_CFLAGS_COMPILE = [ "-DQT_NO_VERSION_TAGGING=1" ]; - NIX_CFLAGS_COMPILE = "-fPIC"; + buildInputs = + [ cmake makeWrapper qtbase ] + ++ lib.optionals buildCore [qtscript qca-qt5] + ++ lib.optionals buildClient [libdbusmenu phonon] + ++ lib.optionals (buildClient && withKDE) [ + extra-cmake-modules kconfigwidgets kcoreaddons + knotifications knotifyconfig ktextwidgets kwidgetsaddons + kxmlgui + ]; cmakeFlags = [ - "-DEMBED_DATA=OFF" ] + "-DEMBED_DATA=OFF" + "-DUSE_QT5=ON" + ] ++ edf static "STATIC" ++ edf monolithic "WANT_MONO" ++ edf daemon "WANT_CORE" ++ edf client "WANT_QTCLIENT" - ++ edf withKDE "WITH_KDE" - ++ edf previews "WITH_WEBKIT"; + ++ edf withKDE "WITH_KDE"; preFixup = lib.optionalString buildClient '' @@ -66,6 +83,6 @@ in with stdenv; mkDerivation rec { license = stdenv.lib.licenses.gpl3; maintainers = with maintainers; [ phreedom ttuegel ]; repositories.git = https://github.com/quassel/quassel.git; - inherit (qt.meta) platforms; + inherit (qtbase.meta) platforms; }; } diff --git a/pkgs/applications/networking/irc/quassel/qt-5.nix b/pkgs/applications/networking/irc/quassel/qt-5.nix deleted file mode 100644 index d631f4aa2146..000000000000 --- a/pkgs/applications/networking/irc/quassel/qt-5.nix +++ /dev/null @@ -1,88 +0,0 @@ -{ monolithic ? true # build monolithic Quassel -, daemon ? false # build Quassel daemon -, client ? false # build Quassel client -, tag ? "" # tag added to the package name -, static ? false # link statically - -, stdenv, fetchurl, cmake, makeWrapper, dconf -, qtbase, qtscript -, phonon, libdbusmenu, qca-qt5 - -, withKDE ? stdenv.isLinux # enable KDE integration -, extra-cmake-modules -, kconfigwidgets -, kcoreaddons -, knotifications -, knotifyconfig -, ktextwidgets -, kwidgetsaddons -, kxmlgui -}: - -let - buildClient = monolithic || client; - buildCore = monolithic || daemon; -in - -assert stdenv.isLinux; - -assert monolithic -> !client && !daemon; -assert client || daemon -> !monolithic; -assert !buildClient -> !withKDE; # KDE is used by the client only - -let - edf = flag: feature: [("-D" + feature + (if flag then "=ON" else "=OFF"))]; - source = import ./source.nix { inherit fetchurl; }; - -in with stdenv; mkDerivation rec { - inherit (source) src version; - - name = "quassel${tag}-${version}"; - - enableParallelBuilding = true; - - # Prevent ``undefined reference to `qt_version_tag''' in SSL check - NIX_CFLAGS_COMPILE = [ "-DQT_NO_VERSION_TAGGING=1" ]; - - buildInputs = - [ cmake makeWrapper qtbase ] - ++ lib.optionals buildCore [qtscript qca-qt5] - ++ lib.optionals buildClient [libdbusmenu phonon] - ++ lib.optionals (buildClient && withKDE) [ - extra-cmake-modules kconfigwidgets kcoreaddons - knotifications knotifyconfig ktextwidgets kwidgetsaddons - kxmlgui - ]; - - cmakeFlags = [ - "-DEMBED_DATA=OFF" - "-DUSE_QT5=ON" - ] - ++ edf static "STATIC" - ++ edf monolithic "WANT_MONO" - ++ edf daemon "WANT_CORE" - ++ edf client "WANT_QTCLIENT" - ++ edf withKDE "WITH_KDE"; - - preFixup = - lib.optionalString buildClient '' - wrapProgram "$out/bin/quassel${lib.optionalString client "client"}" \ - --prefix GIO_EXTRA_MODULES : "${dconf}/lib/gio/modules" - ''; - - meta = with stdenv.lib; { - homepage = http://quassel-irc.org/; - description = "Qt/KDE distributed IRC client suppporting a remote daemon"; - longDescription = '' - Quassel IRC is a cross-platform, distributed IRC client, - meaning that one (or multiple) client(s) can attach to - and detach from a central core -- much like the popular - combination of screen and a text-based IRC client such - as WeeChat, but graphical (based on Qt4/KDE4 or Qt5/KF5). - ''; - license = stdenv.lib.licenses.gpl3; - maintainers = with maintainers; [ phreedom ttuegel ]; - repositories.git = https://github.com/quassel/quassel.git; - inherit (qtbase.meta) platforms; - }; -} diff --git a/pkgs/applications/networking/irc/sic/default.nix b/pkgs/applications/networking/irc/sic/default.nix index 7c13b04e670f..6f48f44214cc 100644 --- a/pkgs/applications/networking/irc/sic/default.nix +++ b/pkgs/applications/networking/irc/sic/default.nix @@ -4,7 +4,7 @@ stdenv.mkDerivation rec { name = "sic-${version}"; version = "1.2"; - makeFlags = "PREFIX=$out"; + makeFlags = "PREFIX=$(out)"; src = fetchurl { url = "http://dl.suckless.org/tools/sic-${version}.tar.gz"; sha256 = "ac07f905995e13ba2c43912d7a035fbbe78a628d7ba1c256f4ca1372fb565185"; diff --git a/pkgs/applications/networking/mailreaders/mutt/default.nix b/pkgs/applications/networking/mailreaders/mutt/default.nix index 195cf13e4c29..e5cb54723d3e 100644 --- a/pkgs/applications/networking/mailreaders/mutt/default.nix +++ b/pkgs/applications/networking/mailreaders/mutt/default.nix @@ -20,11 +20,11 @@ with stdenv.lib; stdenv.mkDerivation rec { name = "mutt-${version}"; - version = "1.7.2"; + version = "1.8.0"; src = fetchurl { url = "http://ftp.mutt.org/pub/mutt/${name}.tar.gz"; - sha256 = "1yazrl82s9fxmamnlvwmsxhwrxnwv6kwakgfmawda8ndhwb50lqm"; + sha256 = "1axdcylyv0p194y6lj1jx127g5yc74zqzzxdc014cjw02bd1x125"; }; patchPhase = optionalString (openssl != null) '' diff --git a/pkgs/applications/networking/mailreaders/thunderbird-bin/default.nix b/pkgs/applications/networking/mailreaders/thunderbird-bin/default.nix index 2bc65226c5fc..1b9c1ac1622f 100644 --- a/pkgs/applications/networking/mailreaders/thunderbird-bin/default.nix +++ b/pkgs/applications/networking/mailreaders/thunderbird-bin/default.nix @@ -13,7 +13,7 @@ , gdk_pixbuf , glib , glibc -, gst_plugins_base +, gst-plugins-base , gstreamer , gtk2 , kerberos @@ -91,7 +91,7 @@ stdenv.mkDerivation { gdk_pixbuf glib glibc - gst_plugins_base + gst-plugins-base gstreamer gtk2 kerberos diff --git a/pkgs/applications/networking/mailreaders/thunderbird/default.nix b/pkgs/applications/networking/mailreaders/thunderbird/default.nix index f71a6dff37c5..d4ddfcfc4a69 100644 --- a/pkgs/applications/networking/mailreaders/thunderbird/default.nix +++ b/pkgs/applications/networking/mailreaders/thunderbird/default.nix @@ -3,7 +3,7 @@ , freetype, fontconfig, file, alsaLib, nspr, nss, libnotify , yasm, mesa, sqlite, unzip, makeWrapper , hunspell, libevent, libstartup_notification, libvpx -, cairo, gstreamer, gst_plugins_base, icu +, cairo, gstreamer, gst-plugins-base, icu , writeScript, xidel, common-updater-scripts, coreutils, gnused, gnugrep, curl , debugBuild ? false , # If you want the resulting program to call itself "Thunderbird" diff --git a/pkgs/applications/networking/mumble/default.nix b/pkgs/applications/networking/mumble/default.nix index 92fe9c9d01be..7c773b0db8ba 100644 --- a/pkgs/applications/networking/mumble/default.nix +++ b/pkgs/applications/networking/mumble/default.nix @@ -108,12 +108,12 @@ let }; stableSource = rec { - version = "1.2.17"; + version = "1.2.19"; qtVersion = 4; src = fetchurl { url = "https://github.com/mumble-voip/mumble/releases/download/${version}/mumble-${version}.tar.gz"; - sha256 = "176br3b0pv5sz3zvgzsz9rxr3n79irlm902h7n1wh4f6vbph2dhw"; + sha256 = "1s60vaici3v034jzzi20x23hsj6mkjlc0glipjq4hffrg9qgnizh"; }; }; diff --git a/pkgs/applications/networking/newsreaders/kwooty/0001-search-paths.patch b/pkgs/applications/networking/newsreaders/kwooty/0001-search-paths.patch deleted file mode 100644 index 6d1d2bac409b..000000000000 --- a/pkgs/applications/networking/newsreaders/kwooty/0001-search-paths.patch +++ /dev/null @@ -1,33 +0,0 @@ -From 6b5730e729d72c8d9242163e7061b956abee61f5 Mon Sep 17 00:00:00 2001 -From: Thomas Tuegel <ttuegel@gmail.com> -Date: Sat, 12 Sep 2015 16:14:10 -0500 -Subject: [PATCH] search paths - ---- - src/utilities/utility.cpp | 3 ++- - 1 file changed, 2 insertions(+), 1 deletion(-) - -diff --git a/src/utilities/utility.cpp b/src/utilities/utility.cpp -index 2e322aa..2e9e4d2 100644 ---- a/src/utilities/utility.cpp -+++ b/src/utilities/utility.cpp -@@ -299,6 +299,7 @@ QString Utility::searchExternalPrograms(const QString& programToSearch, bool& pr - - QString programPathName; - QStringList searchPathList = Settings::searchPathList(); -+ searchPathList << "/usr/bin/unpar" << "/usr/bin/unrar" << "/usr/bin/7z"; - - QStringList programsWithDifferentNames = programToSearch.split(";"); - -@@ -368,7 +369,7 @@ QStringList Utility::buildPriorityArgument(const int& processPriority, const int - QStringList niceProcessArgs; - - // look for 'nice' location : -- QString nicePath = KStandardDirs::findExe("nice"); -+ QString nicePath = QString("/usr/bin/nice"); - niceProcessArgs.append(nicePath); - niceProcessArgs.append("-n"); - --- -2.5.0 - diff --git a/pkgs/applications/networking/newsreaders/kwooty/default.nix b/pkgs/applications/networking/newsreaders/kwooty/default.nix deleted file mode 100644 index f4bd04e8a2d1..000000000000 --- a/pkgs/applications/networking/newsreaders/kwooty/default.nix +++ /dev/null @@ -1,39 +0,0 @@ -{ stdenv, fetchurl, cmake, qt4, gettext -, kdelibs, kdebase_workspace, perl -, openssl, phonon, automoc4 -, libX11, libXext, libXft -, unrar, p7zip, par2cmdline, coreutils -}: - -let version = "1.1.0"; - name = "kwooty-${version}"; -in stdenv.mkDerivation { - inherit name; - - src = fetchurl { - url = "https://dl.opendesktop.org/api/files/download/id/1466631747/114385-${name}.tar.gz"; - sha256 = "10a9asjv6ja1xdjli2399dyka2rbia3qdm5bdpmcng6xdsbhx3ap"; - }; - - patches = [ ./0001-search-paths.patch ]; - - postPatch = '' - echo "Changing paths to archive utilities to the nix store"; - substituteInPlace "src/utility.cpp" \ - --replace "/usr/bin/unrar" "${unrar}/bin" \ - --replace "/usr/bin/unpar" "${par2cmdline}/bin" \ - --replace "/usr/bin/7z" "${p7zip}/bin" \ - --replace "/usr/bin/nice" "${coreutils}/bin/nice" - ''; - - buildInputs = - [ stdenv perl cmake qt4 gettext automoc4 openssl - kdelibs kdebase_workspace phonon - libX11 libXext libXft - ]; - - meta = { - description = "Binary news reader of KDE"; - broken = true; - }; -} diff --git a/pkgs/applications/networking/p2p/ktorrent/5.nix b/pkgs/applications/networking/p2p/ktorrent/5.nix deleted file mode 100644 index 7e47838c4f98..000000000000 --- a/pkgs/applications/networking/p2p/ktorrent/5.nix +++ /dev/null @@ -1,41 +0,0 @@ -{ stdenv, fetchurl, cmake -, ecm, qtbase, qtscript -, ki18n, kio, knotifications, knotifyconfig, kdoctools, kross, kcmutils, kdelibs4support -, libktorrent, boost, taglib -}: - -stdenv.mkDerivation rec { - name = pname + "-" + version; - - pname = "ktorrent"; - version = "5.0.1"; - - src = fetchurl { - url = http://download.kde.org/stable/ktorrent/5.0/ktorrent-5.0.1.tar.xz; - sha256 = "1rbr932djmn1la6vs2sy1zdf39fmla8vwzfn76h7csncbp5fw3yh"; - }; - - patches = - [ (fetchurl { - url = https://cgit.kde.org/ktorrent.git/patch/?id=f48acc22f0105ce6bac63294d248873ae231c6cc; - sha256 = "0jm4y35w2ypbjzf165rnjr224nq4w651ydnpd9zdn3inxh8r4s0v"; - }) - ]; - - nativeBuildInputs = [ kdoctools ecm ]; - - buildInputs = - [ cmake qtbase qtscript - ki18n kio knotifications knotifyconfig kross kcmutils kdelibs4support - libktorrent taglib - ]; - - enableParallelBuilding = true; - - meta = { - description = "KDE integrated BtTorrent client"; - homepage = https://www.kde.org/applications/internet/ktorrent/; - maintainers = [ stdenv.lib.maintainers.eelco ]; - platforms = stdenv.lib.platforms.linux; - }; -} diff --git a/pkgs/applications/networking/p2p/ktorrent/default.nix b/pkgs/applications/networking/p2p/ktorrent/default.nix index e53fda089111..73cd26b2a6e8 100644 --- a/pkgs/applications/networking/p2p/ktorrent/default.nix +++ b/pkgs/applications/networking/p2p/ktorrent/default.nix @@ -1,32 +1,41 @@ -{ stdenv, fetchurl, cmake, automoc4, libktorrent, taglib, kdepimlibs, boost -, gettext, kdebase_workspace, qt4, kdelibs, phonon }: +{ stdenv, fetchurl, cmake +, extra-cmake-modules, qtbase, qtscript +, ki18n, kio, knotifications, knotifyconfig, kdoctools, kross, kcmutils, kdelibs4support +, libktorrent, boost, taglib +}: stdenv.mkDerivation rec { name = pname + "-" + version; pname = "ktorrent"; - version = "4.3.1"; + version = "5.0.1"; src = fetchurl { - url = "${meta.homepage}/downloads/${version}/${name}.tar.bz2"; - sha256 = "66094f6833347afb0c49e332f0ec15ec48db652cbe66476840846ffd5ca0e4a1"; + url = http://download.kde.org/stable/ktorrent/5.0/ktorrent-5.0.1.tar.xz; + sha256 = "1rbr932djmn1la6vs2sy1zdf39fmla8vwzfn76h7csncbp5fw3yh"; }; - patches = [ ./find-workspace.diff ]; + patches = + [ (fetchurl { + url = https://cgit.kde.org/ktorrent.git/patch/?id=f48acc22f0105ce6bac63294d248873ae231c6cc; + sha256 = "0jm4y35w2ypbjzf165rnjr224nq4w651ydnpd9zdn3inxh8r4s0v"; + }) + ]; - KDEDIRS = libktorrent; + nativeBuildInputs = [ kdoctools extra-cmake-modules ]; buildInputs = - [ cmake qt4 kdelibs automoc4 phonon libktorrent boost taglib kdepimlibs - gettext kdebase_workspace + [ cmake qtbase qtscript + ki18n kio knotifications knotifyconfig kross kcmutils kdelibs4support + libktorrent taglib ]; enableParallelBuilding = true; meta = { description = "KDE integrated BtTorrent client"; - homepage = http://ktorrent.pwsp.net; - maintainers = with stdenv.lib.maintainers; [ sander urkud ]; - inherit (libktorrent.meta) platforms; + homepage = https://www.kde.org/applications/internet/ktorrent/; + maintainers = [ stdenv.lib.maintainers.eelco ]; + platforms = stdenv.lib.platforms.linux; }; } diff --git a/pkgs/applications/networking/p2p/ktorrent/find-workspace.diff b/pkgs/applications/networking/p2p/ktorrent/find-workspace.diff deleted file mode 100644 index b07c1ca1b83c..000000000000 --- a/pkgs/applications/networking/p2p/ktorrent/find-workspace.diff +++ /dev/null @@ -1,29 +0,0 @@ -Fix finding kworkspace.h -diff --git a/plugins/shutdown/CMakeLists.txt b/plugins/shutdown/CMakeLists.txt -index 59e5470..5b932ff 100644 ---- a/plugins/shutdown/CMakeLists.txt -+++ b/plugins/shutdown/CMakeLists.txt -@@ -1,6 +1,8 @@ - set(KWORKSPACE_FOUND FALSE) --FIND_PATH(KWORKSPACE_INCLUDE_DIR NAMES kworkspace.h PATHS ${KDE4_INCLUDE_DIR}/kworkspace ${INCLUDE_INSTALL_DIR}/kworkspace.h) --FIND_LIBRARY(KWORKSPACE_LIBRARY NAMES kworkspace PATHS ${KDE4_LIB_DIR} ${LIB_INSTALL_DIR}) -+FIND_PATH(KWORKSPACE_INCLUDE_DIR -+ NAMES kworkspace/kworkspace.h -+ HINTS ${KDE4_INCLUDE_DIR} ${INCLUDE_INSTALL_DIR}) -+FIND_LIBRARY(KWORKSPACE_LIBRARY NAMES kworkspace HINTS ${KDE4_LIB_DIR} ${LIB_INSTALL_DIR}) - - if(KWORKSPACE_INCLUDE_DIR AND KWORKSPACE_LIBRARY) - set(KWORKSPACE_FOUND TRUE) -diff --git a/plugins/shutdown/shutdownplugin.cpp b/plugins/shutdown/shutdownplugin.cpp -index e233353..1efc20b 100644 ---- a/plugins/shutdown/shutdownplugin.cpp -+++ b/plugins/shutdown/shutdownplugin.cpp -@@ -19,7 +19,7 @@ - ***************************************************************************/ - #include <kjob.h> - #include <kgenericfactory.h> --#include <kworkspace.h> -+#include <kworkspace/kworkspace.h> - #include <ktoggleaction.h> - #include <kactioncollection.h> - #include <kmessagebox.h> diff --git a/pkgs/applications/networking/sniffers/wireshark/default.nix b/pkgs/applications/networking/sniffers/wireshark/default.nix index 7315b84d7f37..fd709aa76603 100644 --- a/pkgs/applications/networking/sniffers/wireshark/default.nix +++ b/pkgs/applications/networking/sniffers/wireshark/default.nix @@ -1,6 +1,6 @@ { stdenv, lib, fetchurl, pkgconfig, pcre, perl, flex, bison, gettext, libpcap, libnl, c-ares , gnutls, libgcrypt, libgpgerror, geoip, openssl, lua5, makeDesktopItem, python, libcap, glib -, libssh, zlib, cmake, ecm +, libssh, zlib, cmake, extra-cmake-modules , withGtk ? false, gtk3 ? null, pango ? null, cairo ? null, gdk_pixbuf ? null , withQt ? false, qt5 ? null , ApplicationServices, SystemConfiguration, gmp @@ -24,7 +24,7 @@ in stdenv.mkDerivation { }; buildInputs = [ - bison cmake ecm flex gettext pcre perl pkgconfig libpcap lua5 libssh openssl libgcrypt libgpgerror gnutls + bison cmake extra-cmake-modules flex gettext pcre perl pkgconfig libpcap lua5 libssh openssl libgcrypt libgpgerror gnutls geoip c-ares python glib zlib ] ++ (optionals withQt (with qt5; [ qtbase qtmultimedia qtsvg qttools ])) ++ (optionals withGtk [ gtk3 pango cairo gdk_pixbuf ]) diff --git a/pkgs/applications/office/basket/default.nix b/pkgs/applications/office/basket/default.nix deleted file mode 100644 index 2417e263d442..000000000000 --- a/pkgs/applications/office/basket/default.nix +++ /dev/null @@ -1,25 +0,0 @@ -{ stdenv, fetchurl, automoc4, cmake, gettext, perl, pkgconfig -, kdelibs, qimageblitz, kdepimlibs, gpgme -}: - -stdenv.mkDerivation rec { - name = "basket-1.81"; - - src = fetchurl { - url = "http://basket.kde.org/downloads/${name}.tar.bz2"; - sha256 = "10zxlgz96iwmqz30sw6f20pzjmnjvqhx7b5ihfwz47agyfdb98v0"; - }; - - KDEDIRS = kdepimlibs; - - buildInputs = [ kdelibs qimageblitz kdepimlibs gpgme ]; - - nativeBuildInputs = [ automoc4 cmake gettext perl pkgconfig ]; - - meta = { - description = "A multi-purpose note-taking application"; - homepage = http://basket.kde.org/; - maintainers = [ stdenv.lib.maintainers.urkud ]; - inherit (kdelibs.meta) platforms; - }; -} diff --git a/pkgs/applications/office/calligra/default.nix b/pkgs/applications/office/calligra/default.nix index 99107787493f..154ff33c8449 100644 --- a/pkgs/applications/office/calligra/default.nix +++ b/pkgs/applications/office/calligra/default.nix @@ -1,8 +1,8 @@ -{ stdenv, fetchurl, automoc4, cmake, perl, pkgconfig, kdelibs, lcms2, libpng, eigen +{ stdenv, fetchurl, automoc4, cmake, perl, pkgconfig, kdelibs4, lcms2, libpng, eigen , exiv2, boost, sqlite, icu, vc, shared_mime_info, librevenge, libodfgen, libwpg , libwpd, poppler_qt4, ilmbase, gsl, qca2, marble, libvisio, libmysql, postgresql , freetds, fftw, glew, libkdcraw, pstoedit, opencolorio, kdepimlibs -, kactivities, okular, git, oxygen_icons, makeWrapper +, kactivities, okular, git, oxygen-icons5, makeWrapper # TODO: not found #, xbase, openjpeg # TODO: package libWPS, Spnav, m2mml, LibEtonyek @@ -19,7 +19,7 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ automoc4 cmake perl pkgconfig makeWrapper ]; buildInputs = [ - kdelibs lcms2 libpng eigen + kdelibs4 lcms2 libpng eigen exiv2 boost sqlite icu vc shared_mime_info librevenge libodfgen libwpg libwpd poppler_qt4 ilmbase gsl qca2 marble libvisio libmysql postgresql freetds fftw glew libkdcraw opencolorio kdepimlibs @@ -32,7 +32,7 @@ stdenv.mkDerivation rec { for i in $out/bin/*; do wrapProgram $i \ --prefix PATH ':' "${pstoedit.out}/bin" \ - --prefix XDG_DATA_DIRS ':' "${oxygen_icons}/share" + --prefix XDG_DATA_DIRS ':' "${oxygen-icons5}/share" done ''; @@ -49,7 +49,7 @@ stdenv.mkDerivation rec { ''; homepage = http://calligra.org; maintainers = with maintainers; [ urkud phreedom ebzzry ]; - inherit (kdelibs.meta) platforms; + inherit (kdelibs4.meta) platforms; license = licenses.gpl2; }; } diff --git a/pkgs/applications/office/eventlist/default.nix b/pkgs/applications/office/eventlist/default.nix deleted file mode 100644 index 395cb3d0a914..000000000000 --- a/pkgs/applications/office/eventlist/default.nix +++ /dev/null @@ -1,30 +0,0 @@ -{ stdenv, fetchurl, automoc4, cmake, gettext, perl, pkgconfig -, kdelibs, kdepimlibs, akonadi, boost }: - -stdenv.mkDerivation rec { - name = "plasmoid-eventlist-0.6.96"; - - src = fetchurl { - url = "http://kde-look.org/CONTENT/content-files/107779-plasmoid-eventlist-0.6.96.tar.bz2"; - sha256 = "26cc7bd1c465bf1379fd0ba1fa8592eaa62f2553734d1b283e17359103908eea"; - }; - - nativeBuildInputs = [ automoc4 cmake gettext perl pkgconfig ]; - buildInputs = [ kdelibs kdepimlibs akonadi boost ]; - - meta = { - inherit (kdelibs.meta) platforms; - description = "KDE Plasmoid to show events and todos on the desktop"; - longDescription = '' - This is a plasmoid to show the events and todos from Akonadi resources (KOrganizer, Birthdays etc.). - With a google resource also Google calendar items can be shown. - Also possible with a CalDAV resource. - A facebook resource is also available. - - Incidences can be filtered, added, edited, deleted via context menu. - ''; - homepage = "http://kde-look.org/content/show.php/Eventlist?content=107779"; - license = stdenv.lib.licenses.gpl3Plus; - - }; -} diff --git a/pkgs/applications/office/homebank/default.nix b/pkgs/applications/office/homebank/default.nix index b4df8fdd4606..ac2f71c872da 100644 --- a/pkgs/applications/office/homebank/default.nix +++ b/pkgs/applications/office/homebank/default.nix @@ -2,10 +2,10 @@ , hicolor_icon_theme, libsoup, gnome3 }: stdenv.mkDerivation rec { - name = "homebank-5.1.3"; + name = "homebank-5.1.4"; src = fetchurl { url = "http://homebank.free.fr/public/${name}.tar.gz"; - sha256 = "0wzv2hkm30a1kqjldw02bzbh49bdmac041d6qybjzvkgwvrbmci2"; + sha256 = "07zxb9n7d281nfv29gi09fsp7y73fx4w2s48hgdn9s4vij25zwqa"; }; nativeBuildInputs = [ pkgconfig wrapGAppsHook ]; diff --git a/pkgs/applications/office/kbibtex/default.nix b/pkgs/applications/office/kbibtex/default.nix deleted file mode 100644 index a18ba50cabe2..000000000000 --- a/pkgs/applications/office/kbibtex/default.nix +++ /dev/null @@ -1,21 +0,0 @@ -{ stdenv, fetchurl, automoc4, cmake, perl, pkgconfig -, kdelibs, libxslt, poppler_qt4 -}: - -stdenv.mkDerivation rec { - pname = "kbibtex"; - version = "0.4"; - name = "${pname}-${version}"; - - src = fetchurl { - url = "http://download.gna.org/${pname}/${version}/${name}.tar.bz2"; - sha256 = "1hq0az0dp96195z26wjfwj9ynd57pfv13f1xcl5vbsswcjfrczws"; - }; - - patchPhase = '' - sed -e '25i#include <QModelIndex>' -i src/gui/preferences/settingsabstractwidget.h - ''; - - buildInputs = [ kdelibs libxslt poppler_qt4 ]; - nativeBuildInputs = [ automoc4 cmake perl pkgconfig ]; -} diff --git a/pkgs/applications/office/kmymoney/default.nix b/pkgs/applications/office/kmymoney/default.nix deleted file mode 100644 index f375da175044..000000000000 --- a/pkgs/applications/office/kmymoney/default.nix +++ /dev/null @@ -1,34 +0,0 @@ -{ stdenv, fetchurl, cmake, kdelibs, automoc4, kdepimlibs, gettext, pkgconfig -, shared_mime_info, perl, boost, gpgme, gmpxx, libalkimia, libofx, libical -, doxygen, aqbanking, gwenhywfar }: - -stdenv.mkDerivation rec { - name = "kmymoney-${version}"; - version = "4.8.0"; - - src = fetchurl { - url = "mirror://kde/stable/kmymoney/${version}/src/${name}.tar.xz"; - sha256 = "1hlayhcmdfayma4hchv2bfyg82ry0h74hg4095d959mg19qkb9n2"; - }; - - cmakeFlags = [ - "-DENABLE_KBANKING='true'" - ]; - - buildInputs = [ kdepimlibs perl boost gpgme gmpxx libalkimia libofx libical - doxygen aqbanking gwenhywfar ]; - nativeBuildInputs = [ cmake automoc4 gettext shared_mime_info pkgconfig ]; - - KDEDIRS = libalkimia; - - patches = [ - ./qgpgme.patch - ./seqaccessmgrtest.patch - ]; - - meta = { - homepage = http://kmymoney2.sourceforge.net/; - description = "KDE personal money manager"; - inherit (kdelibs.meta) platforms maintainers; - }; -} diff --git a/pkgs/applications/office/kmymoney/qgpgme.patch b/pkgs/applications/office/kmymoney/qgpgme.patch deleted file mode 100644 index 59ed37edaf8e..000000000000 --- a/pkgs/applications/office/kmymoney/qgpgme.patch +++ /dev/null @@ -1,17 +0,0 @@ -KMymoney tries to find qgpgme before kdepimlibs. This is wrong because -FindQGpgme is installed by kdepimlibs, thus can be invisible until kdepimlibs -found. -diff --git a/CMakeLists.txt b/CMakeLists.txt -index f6d7305..88bac67 100644 ---- a/CMakeLists.txt -+++ b/CMakeLists.txt -@@ -59,8 +59,8 @@ else (WIN32) - find_package(Boost "1.33.1" COMPONENTS graph) - endif (WIN32) - # needed by libkgpgfile --find_package(QGpgme REQUIRED) - find_package(KdepimLibs REQUIRED) -+find_package(QGpgme REQUIRED) - find_package(SharedMimeInfo REQUIRED) - - add_definitions( ${QT_DEFINITIONS} ${KDE4_DEFINITIONS} ${KDEPIM_DEFINITIONS}) diff --git a/pkgs/applications/office/kmymoney/seqaccessmgrtest.patch b/pkgs/applications/office/kmymoney/seqaccessmgrtest.patch deleted file mode 100644 index d01a433ba09a..000000000000 --- a/pkgs/applications/office/kmymoney/seqaccessmgrtest.patch +++ /dev/null @@ -1,26 +0,0 @@ -Fix tests for 32bit builds until we can bring these upstream -diff --git a/kmymoney/mymoney/storage/mymoneyseqaccessmgrtest.cpp b/kmymoney/mymoney/storage/mymoneyseqaccessmgrtest.cpp -index dcb4b4a..e803203 100644 ---- a/kmymoney/mymoney/storage/mymoneyseqaccessmgrtest.cpp -+++ b/kmymoney/mymoney/storage/mymoneyseqaccessmgrtest.cpp -@@ -58,13 +58,13 @@ void MyMoneySeqAccessMgrTest::testEmptyConstructor() - QCOMPARE(m->m_nextPayeeID, 0ul); - QCOMPARE(m->m_nextScheduleID, 0ul); - QCOMPARE(m->m_nextReportID, 0ul); -- QCOMPARE(m->m_institutionList.count(), 0ul); -- QCOMPARE(m->m_accountList.count(), 5ul); -- QCOMPARE(m->m_transactionList.count(), 0ul); -- QCOMPARE(m->m_transactionKeys.count(), 0ul); -- QCOMPARE(m->m_payeeList.count(), 0ul); -- QCOMPARE(m->m_tagList.count(), 0ul); -- QCOMPARE(m->m_scheduleList.count(), 0ul); -+ QCOMPARE(m->m_institutionList.count(), (size_t)0); -+ QCOMPARE(m->m_accountList.count(), (size_t)5); -+ QCOMPARE(m->m_transactionList.count(), (size_t)0); -+ QCOMPARE(m->m_transactionKeys.count(), (size_t)0); -+ QCOMPARE(m->m_payeeList.count(), (size_t)0); -+ QCOMPARE(m->m_tagList.count(), (size_t)0); -+ QCOMPARE(m->m_scheduleList.count(), (size_t)0); - - QCOMPARE(m->m_dirty, false); - QCOMPARE(m->m_creationDate, QDate::currentDate()); diff --git a/pkgs/applications/office/libreoffice/default.nix b/pkgs/applications/office/libreoffice/default.nix index 989cf17e2761..f583660c6232 100644 --- a/pkgs/applications/office/libreoffice/default.nix +++ b/pkgs/applications/office/libreoffice/default.nix @@ -6,7 +6,7 @@ , openssl, gperf, cppunit, GConf, ORBit2, poppler , librsvg, gnome_vfs, mesa, bsh, CoinMP, libwps, libabw , autoconf, automake, openldap, bash, hunspell, librdf_redland, nss, nspr -, libwpg, dbus_glib, glibc, qt4, kde4, clucene_core, libcdr, lcms, vigra +, libwpg, dbus_glib, glibc, qt4, clucene_core, libcdr, lcms, vigra , unixODBC, mdds, sane-backends, mythes, libexttextcat, libvisio , fontsConf, pkgconfig, libzip, bluez5, libtool, maven , libatomic_ops, graphite2, harfbuzz, libodfgen, libzmf @@ -252,7 +252,7 @@ in stdenv.mkDerivation rec { libodfgen CoinMP librdf_rasqal defaultIconTheme makeWrapper gdb ] - ++ lib.optional kdeIntegration kde4.kdelibs; + ++ lib.optional kdeIntegration kdelibs4; passthru = { inherit srcs; diff --git a/pkgs/applications/office/libreoffice/still.nix b/pkgs/applications/office/libreoffice/still.nix index 26bb53c9b389..329b292da27c 100644 --- a/pkgs/applications/office/libreoffice/still.nix +++ b/pkgs/applications/office/libreoffice/still.nix @@ -6,7 +6,7 @@ , openssl, gperf, cppunit, GConf, ORBit2, poppler , librsvg, gnome_vfs, mesa, bsh, CoinMP, libwps, libabw , autoconf, automake, openldap, bash, hunspell, librdf_redland, nss, nspr -, libwpg, dbus_glib, glibc, qt4, kde4, clucene_core, libcdr, lcms, vigra +, libwpg, dbus_glib, glibc, qt4, kdelibs4, clucene_core, libcdr, lcms, vigra , unixODBC, mdds, sane-backends, mythes, libexttextcat, libvisio , fontsConf, pkgconfig, libzip, bluez5, libtool, maven , libatomic_ops, graphite2, harfbuzz, libodfgen @@ -247,7 +247,7 @@ in stdenv.mkDerivation rec { librevenge libe-book libmwaw glm glew ncurses libodfgen CoinMP librdf_rasqal defaultIconTheme makeWrapper ] - ++ lib.optional kdeIntegration kde4.kdelibs; + ++ lib.optional kdeIntegration kdelibs4; passthru = { inherit srcs; diff --git a/pkgs/applications/office/moneyplex/default.nix b/pkgs/applications/office/moneyplex/default.nix new file mode 100644 index 000000000000..4530305ee12e --- /dev/null +++ b/pkgs/applications/office/moneyplex/default.nix @@ -0,0 +1,121 @@ +{ stdenv, fetchurl, patchelf, libredirect, coreutils, pcsclite +, zlib, glib, gdk_pixbuf, gtk2, cairo, pango, libX11, atk, openssl }: + +let + libPath = stdenv.lib.makeLibraryPath [ + stdenv.cc.cc zlib glib gdk_pixbuf gtk2 cairo pango libX11 atk openssl + ]; + + src_i686 = { + url = "http://www.matrica.com/download/distribution/moneyplex_16_install32_22424.tar.gz"; + sha256 = "0yfpc6s85r08g796dycl378kagkma865vp7j72npia3hjc4vwamr"; + }; + + src_x86_64 = { + url = "http://www.matrica.com/download/distribution/moneyplex_16_install64_22424.tar.gz"; + sha256 = "03vxbg1yp8qyvcn6bw2a5s134nxzq9cn0vqbmlld7hh4knbsfqzw"; + }; +in + +stdenv.mkDerivation rec { + name = "moneyplex-${version}"; + version = "16.0.22424"; + + src = fetchurl (if stdenv.system == "i686-linux" then src_i686 + else if stdenv.system == "x86_64-linux" then src_x86_64 + else throw "moneyplex requires i686-linux or x86_64-linux"); + + + phases = [ "unpackPhase" "installPhase" "postInstall" ]; + + buildInputs = [ ]; + + installPhase = + '' + mkdir -p "$out/opt/moneyplex" + cp -r . $out/opt/moneyplex + + mkdir "$out/bin" + + cat > $out/bin/moneyplex <<EOF + #!${stdenv.shell} + + if [ -z "\$XDG_DATA_HOME" ]; then + MDIR=\$HOME/.local/share/moneyplex + else + MDIR=\$XDG_DATA_HOME/moneyplex + fi + + if [ ! -d "\$MDIR" ]; then + ${coreutils}/bin/mkdir -p \$MDIR + ${coreutils}/bin/cp -r $out/opt/moneyplex/* \$MDIR + ${coreutils}/bin/chmod 0644 \$MDIR/* + ${coreutils}/bin/chmod 0755 \$MDIR/system + ${coreutils}/bin/chmod 0644 \$MDIR/system/* + ${coreutils}/bin/chmod 0755 \$MDIR/reports + ${coreutils}/bin/chmod 0644 \$MDIR/reports/* + ${coreutils}/bin/chmod 0755 \$MDIR/moneyplex + ${coreutils}/bin/chmod 0755 \$MDIR/prestart + ${coreutils}/bin/chmod 0755 \$MDIR/mpxalarm + fi + + if [ ! -d "\$MDIR/pcsc" ]; then + ${coreutils}/bin/mkdir -p \$MDIR/pcsc + fi + if [ ! -e "\$MDIR/pcsc/libpcsclite.so.1" ] || [ ! \`${coreutils}/bin/readlink -f "\$MDIR/pcsc/libpcsclite.so.1"\` -ef "${pcsclite}/lib/libpcsclite.so.1" ]; then + ${coreutils}/bin/ln -sf "${pcsclite}/lib/libpcsclite.so.1" "\$MDIR/pcsc/libpcsclite.so.1" + fi + + + if [ -e "\$MDIR/rup/rupremote.lst" ]; then + for i in \`${coreutils}/bin/cat "\$MDIR/rup/rupremote.lst"\`; do + ${coreutils}/bin/mv "\$MDIR/rup/"\`${coreutils}/bin/basename \$i\` "\$MDIR/\$i" + done + rm -r "\$MDIR/rup/rupremote.lst" + fi + + if [ ! -e "\$MDIR/moneyplex.patched" ] || [ "\$MDIR/moneyplex" -nt "\$MDIR/moneyplex.patched" ]; then + ${coreutils}/bin/cp "\$MDIR/moneyplex" "\$MDIR/moneyplex.patched" + ${coreutils}/bin/chmod 0755 "\$MDIR/moneyplex.patched" + fi + if [ ! \`${patchelf}/bin/patchelf --print-interpreter \$MDIR/moneyplex.patched\` = $(cat $NIX_CC/nix-support/dynamic-linker) ] || + [ ! \`${patchelf}/bin/patchelf --print-rpath \$MDIR/moneyplex.patched\` = "${libPath}" ]; then + ${patchelf}/bin/patchelf --set-interpreter $(cat $NIX_CC/nix-support/dynamic-linker) --set-rpath "${libPath}" "\$MDIR/moneyplex.patched" + fi + + exec \$MDIR/moneyplex.patched + EOF + + chmod +x $out/bin/moneyplex + ''; + + postInstall = '' + mkdir -p $out/share/icons + cp -r $out/opt/moneyplex/system/mpx256.png $out/share/icons/moneyplex.png + + mkdir -p $out/share/applications + cat > $out/share/applications/moneyplex.desktop <<EOF + [Desktop Entry] + Type=Application + Encoding=UTF-8 + Name=Moneyplex + GenericName=Moneyplex online banking software + Comment=Online banking software + Icon=$out/share/icons/moneyplex.png + Exec=$out/bin/moneyplex + Terminal=false + Categories=Application; + StartupNotify=true + EOF + ''; + + + meta = with stdenv.lib; { + description = "Moneyplex online banking software"; + maintainers = with maintainers; [ tstrobel ]; + platforms = platforms.linux; + license = licenses.unfree; + downloadPage = http://matrica.de/download/download.html; + }; + +} diff --git a/pkgs/applications/office/skrooge/2.nix b/pkgs/applications/office/skrooge/2.nix deleted file mode 100644 index 42cc9b0c6eb1..000000000000 --- a/pkgs/applications/office/skrooge/2.nix +++ /dev/null @@ -1,35 +0,0 @@ -{ stdenv, fetchurl, cmake, ecm, makeQtWrapper, qtwebkit, qtscript, grantlee, - kxmlgui, kwallet, kparts, kdoctools, kjobwidgets, kdesignerplugin, - kiconthemes, knewstuff, sqlcipher, qca-qt5, kdelibs4support, kactivities, - knotifyconfig, krunner, libofx }: - -stdenv.mkDerivation rec { - name = "skrooge-${version}"; - version = "2.7.0"; - - src = fetchurl { - url = "http://download.kde.org/stable/skrooge/${name}.tar.xz"; - sha256 = "1xrh9nal122rzlv4m0x8qah6zpqb6891al3351piarpk2xgjgj4x"; - }; - - nativeBuildInputs = [ cmake ecm makeQtWrapper ]; - - buildInputs = [ qtwebkit qtscript grantlee kxmlgui kwallet kparts kdoctools - kjobwidgets kdesignerplugin kiconthemes knewstuff sqlcipher qca-qt5 - kdelibs4support kactivities knotifyconfig krunner libofx - ]; - - enableParallelBuilding = true; - - postInstall = '' - wrapQtProgram "$out/bin/skrooge" - wrapQtProgram "$out/bin/skroogeconvert" - ''; - - meta = with stdenv.lib; { - description = "A personal finances manager, powered by KDE"; - license = with licenses; [ gpl3 ]; - maintainers = with maintainers; [ joko ]; - homepage = https://skrooge.org/; - }; -} diff --git a/pkgs/applications/office/skrooge/default.nix b/pkgs/applications/office/skrooge/default.nix index b0d7f1399376..acf60bd03755 100644 --- a/pkgs/applications/office/skrooge/default.nix +++ b/pkgs/applications/office/skrooge/default.nix @@ -1,22 +1,35 @@ -{ stdenv, fetchurl, automoc4, cmake, gettext, perl, pkgconfig, shared_mime_info -, libxslt, kdelibs, kdepimlibs, grantlee, qjson, qca2, libofx, sqlite, boost }: +{ stdenv, fetchurl, cmake, extra-cmake-modules, makeQtWrapper, qtwebkit, qtscript, grantlee, + kxmlgui, kwallet, kparts, kdoctools, kjobwidgets, kdesignerplugin, + kiconthemes, knewstuff, sqlcipher, qca-qt5, kdelibs4support, kactivities, + knotifyconfig, krunner, libofx }: stdenv.mkDerivation rec { - name = "skrooge-1.12.5"; + name = "skrooge-${version}"; + version = "2.7.0"; src = fetchurl { url = "http://download.kde.org/stable/skrooge/${name}.tar.xz"; - sha256 = "1mnkm0367knh0a65gifr20p42ql9zndw7d6kmbvfshvpfsmghl40"; + sha256 = "1xrh9nal122rzlv4m0x8qah6zpqb6891al3351piarpk2xgjgj4x"; }; - buildInputs = [ libxslt kdelibs kdepimlibs grantlee qjson qca2 libofx sqlite boost ]; + nativeBuildInputs = [ cmake extra-cmake-modules makeQtWrapper ]; - nativeBuildInputs = [ automoc4 cmake gettext perl pkgconfig shared_mime_info ]; + buildInputs = [ qtwebkit qtscript grantlee kxmlgui kwallet kparts kdoctools + kjobwidgets kdesignerplugin kiconthemes knewstuff sqlcipher qca-qt5 + kdelibs4support kactivities knotifyconfig krunner libofx + ]; - meta = { - inherit (kdelibs.meta) platforms; - description = "A personal finance manager for KDE"; - maintainers = [ stdenv.lib.maintainers.urkud ]; - license = stdenv.lib.licenses.gpl3; + enableParallelBuilding = true; + + postInstall = '' + wrapQtProgram "$out/bin/skrooge" + wrapQtProgram "$out/bin/skroogeconvert" + ''; + + meta = with stdenv.lib; { + description = "A personal finances manager, powered by KDE"; + license = with licenses; [ gpl3 ]; + maintainers = with maintainers; [ joko ]; + homepage = https://skrooge.org/; }; } diff --git a/pkgs/applications/office/zanshin/default.nix b/pkgs/applications/office/zanshin/default.nix index a16ab1baef4e..71f38bb8d3cc 100644 --- a/pkgs/applications/office/zanshin/default.nix +++ b/pkgs/applications/office/zanshin/default.nix @@ -1,5 +1,5 @@ { stdenv, fetchurl, automoc4, cmake, perl, pkgconfig -, kdelibs, kdepimlibs, boost, baloo }: +, kdelibs4, kdepimlibs, boost, baloo }: stdenv.mkDerivation rec { name = "zanshin-0.3.1"; @@ -11,11 +11,11 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ automoc4 cmake perl pkgconfig ]; - buildInputs = [ kdelibs kdepimlibs boost baloo ]; + buildInputs = [ kdelibs4 kdepimlibs boost baloo ]; meta = { description = "GTD for KDE"; maintainers = [ stdenv.lib.maintainers.urkud ]; - inherit (kdelibs.meta) platforms; + inherit (kdelibs4.meta) platforms; }; } diff --git a/pkgs/applications/science/electronics/verilator/default.nix b/pkgs/applications/science/electronics/verilator/default.nix index 5c1cd75fd569..3c01f8f37498 100644 --- a/pkgs/applications/science/electronics/verilator/default.nix +++ b/pkgs/applications/science/electronics/verilator/default.nix @@ -1,16 +1,16 @@ -{ stdenv, fetchurl, perl, flex, bison }: +{ stdenv, fetchurl, perl, flex_2_6_1, bison }: stdenv.mkDerivation rec { name = "verilator-${version}"; - version = "3.884"; + version = "3.900"; src = fetchurl { url = "http://www.veripool.org/ftp/${name}.tgz"; - sha256 = "1j159dg7m2ych5lwglb1qq1fgqh3kwhaa1r3jx84qdisg0icln2y"; + sha256 = "0yvbibcysdiw6mphda0lfs56wz6v450px2420x0hbd3rc7k53s2b"; }; enableParallelBuilding = true; - buildInputs = [ perl flex bison ]; + buildInputs = [ perl flex_2_6_1 bison ]; meta = { description = "Fast and robust (System)Verilog simulator/compiler"; diff --git a/pkgs/applications/science/logic/lean/default.nix b/pkgs/applications/science/logic/lean/default.nix index b6de57951cae..a863b01f43ae 100644 --- a/pkgs/applications/science/logic/lean/default.nix +++ b/pkgs/applications/science/logic/lean/default.nix @@ -1,17 +1,17 @@ -{ stdenv, fetchFromGitHub, cmake, gmp, mpfr, gperftools }: +{ stdenv, fetchFromGitHub, cmake, gmp }: stdenv.mkDerivation rec { name = "lean-${version}"; - version = "3.0.0"; + version = "3.1.0"; src = fetchFromGitHub { owner = "leanprover"; repo = "lean"; rev = "v${version}"; - sha256 = "1ds25213vir8llans7na3laqs8rgr06clgp9xzq8akiwfy87b74i"; + sha256 = "0w4cdai6mzx4wr7gscv4sl5q4mxx1agjbpp4smvrslav7gpbz025"; }; - buildInputs = [ gmp mpfr cmake gperftools ]; + buildInputs = [ gmp cmake ]; enableParallelBuilding = true; preConfigure = '' diff --git a/pkgs/applications/science/logic/logisim/default.nix b/pkgs/applications/science/logic/logisim/default.nix index 27c8947b8cc2..50ef1edf63e2 100644 --- a/pkgs/applications/science/logic/logisim/default.nix +++ b/pkgs/applications/science/logic/logisim/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchurl, jre }: +{ stdenv, fetchurl, jre, makeWrapper }: let version = "2.7.1"; in @@ -11,17 +11,12 @@ stdenv.mkDerivation { }; phases = [ "installPhase" ]; - + + nativeBuildInputs = [makeWrapper]; + installPhase = '' mkdir -pv $out/bin - cp -v $src $out/logisim.jar - - cat > $out/bin/logisim << EOF - #!${stdenv.shell} - ${jre}/bin/java -jar $out/logisim.jar - EOF - - chmod +x $out/bin/logisim + makeWrapper ${jre}/bin/java $out/bin/logisim --add-flags "-jar $src" ''; meta = { diff --git a/pkgs/applications/science/math/R/default.nix b/pkgs/applications/science/math/R/default.nix index dea095c834ff..d9bbda9512a7 100644 --- a/pkgs/applications/science/math/R/default.nix +++ b/pkgs/applications/science/math/R/default.nix @@ -7,11 +7,11 @@ }: stdenv.mkDerivation rec { - name = "R-3.2.4"; + name = "R-3.3.2"; src = fetchurl { url = "http://cran.r-project.org/src/base/R-3/${name}.tar.gz"; - sha256 = "0l6k3l3cy6fa9xkn23zvz5ykpw10s45779x88yz3pzn2x5gl1zds"; + sha256 = "0k2i9qdd83g09fcpls2198q4ykxkii5skczb514gnx7mx4hsv56j"; }; buildInputs = [ bzip2 gfortran libX11 libXmu libXt @@ -21,7 +21,7 @@ stdenv.mkDerivation rec { ++ stdenv.lib.optionals (!stdenv.isDarwin) [ tcl tk ] ++ stdenv.lib.optionals stdenv.isDarwin [ Cocoa Foundation cf-private libobjc ]; - patches = [ ./no-usr-local-search-paths.patch ]; + patches = [ ./no-usr-local-search-paths.patch ./zlib-version-check.patch ]; preConfigure = '' configureFlagsArray=( @@ -35,10 +35,6 @@ stdenv.mkDerivation rec { --with-libpng --with-jpeglib --with-libtiff - --with-system-zlib - --with-system-bzlib - --with-system-pcre - --with-system-xz --with-ICU ${stdenv.lib.optionalString enableStrictBarrier "--enable-strict-barrier"} --enable-R-shlib @@ -69,7 +65,7 @@ stdenv.mkDerivation rec { installTargets = [ "install" "install-info" "install-pdf" ]; - doCheck = true; + doCheck = withRecommendedPackages; enableParallelBuilding = true; diff --git a/pkgs/applications/science/math/R/zlib-version-check.patch b/pkgs/applications/science/math/R/zlib-version-check.patch new file mode 100644 index 000000000000..83cfed2cac4c --- /dev/null +++ b/pkgs/applications/science/math/R/zlib-version-check.patch @@ -0,0 +1,20 @@ +diff --git a/configure b/configure +index cf368ce..dc528ff 100755 +--- a/configure ++++ b/configure +@@ -35507,10 +35507,11 @@ else + #include <string.h> + #include <zlib.h> + int main() { +-#ifdef ZLIB_VERSION +-/* Work around Debian bug: it uses 1.2.3.4 even though there was no such +- version on the master site zlib.net */ +- exit(strncmp(ZLIB_VERSION, "1.2.5", 5) < 0); ++#ifdef ZLIB_VERNUM ++ if (ZLIB_VERNUM < 0x01250) { ++ exit(1); ++ } ++ exit(0); + #else + exit(1); + #endif diff --git a/pkgs/applications/science/programming/fdr/default.nix b/pkgs/applications/science/programming/fdr/default.nix new file mode 100644 index 000000000000..a82027a628f3 --- /dev/null +++ b/pkgs/applications/science/programming/fdr/default.nix @@ -0,0 +1,69 @@ +{stdenv, fetchurl, qtbase, qtx11extras, ncurses, xorg, zlib, python27Packages}: +stdenv.mkDerivation { + name = "fdr-4.2.0"; + src = fetchurl { + url = https://www.cs.ox.ac.uk/projects/fdr/downloads/fdr-3754-linux-x86_64.tar.gz; + sha256 = "d24492485db9b8b95c62c53a6396094f836ee079cfc743688a397503c3ec9bf8"; + }; + + libPath = stdenv.lib.makeLibraryPath [ + stdenv.cc.cc + python27Packages.python + qtbase + qtx11extras + ncurses + xorg.libX11 + xorg.libXft + zlib + ]; + + phases = [ "unpackPhase" "installPhase" ]; + installPhase = '' + mkdir -p "$out" + + # shipped Qt is buggy + rm lib/libQt* + rm -r lib/qt_plugins + + cp -r * "$out" + # Hack around lack of libtinfo in NixOS + ln -s ${ncurses.out}/lib/libncursesw.so.6 $out/lib/libtinfo.so.5 + ln -s ${qtbase.out}/lib/qt5/plugins $out/lib/qt_plugins + ln -s ${zlib.out}/lib/libz.so.1 $out/lib/libz.so.1 + + for b in fdr4 _fdr4 refines _refines cspmprofiler cspmexplorerprof + do + patchelf --set-interpreter $(cat $NIX_CC/nix-support/dynamic-linker) \ + --set-rpath "$libPath:$out/lib" \ + "$out/bin/$b" + done + + for l in corei7/librefines.so \ + libcspm_process_compiler.so \ + libcsp_operators.so \ + _fdr.so \ + libfdr.so \ + libfdr_java.so \ + libprocess_compiler.so \ + librefines_gui.so \ + librefines_licensing.so \ + libboost_date_time.so.1.60.0 \ + libboost_filesystem.so.1.60.0 \ + libboost_iostreams.so.1.60.0 \ + libboost_program_options.so.1.60.0 \ + libboost_serialization.so.1.60.0 \ + libboost_system.so.1.60.0 + do + patchelf --set-rpath "$libPath:$out/lib" \ + "$out/lib/$l" + done + ''; + + meta = with stdenv.lib; { + homepage = https://www.cs.ox.ac.uk/projects/fdr/; + description = "The CSP refinement checker"; + license = licenses.unfreeRedistributable; + platforms = platforms.linux; + maintainers = with maintainers; [ nickhu ]; + }; +} diff --git a/pkgs/applications/science/robotics/gazebo/default.nix b/pkgs/applications/science/robotics/gazebo/default.nix index e8b3bcb16a26..6cefb156d1df 100644 --- a/pkgs/applications/science/robotics/gazebo/default.nix +++ b/pkgs/applications/science/robotics/gazebo/default.nix @@ -5,7 +5,7 @@ , pythonPackages, utillinux # these deps are hidden; cmake doesn't catch them - , gazeboSimulator, sdformat ? gazeboSimulator.sdformat, curl, tinyxml, kde4, x11 + , gazeboSimulator, sdformat ? gazeboSimulator.sdformat, curl, tinyxml, qt4, x11 , withIgnitionTransport ? true , libav, withLibAvSupport ? true , openal, withAudioSupport ? false @@ -57,7 +57,7 @@ stdenv.mkDerivation rec { curl tinyxml x11 - kde4.qt4 + qt4 ] ++ optional stdenv.isLinux utillinux # on Linux needs uuid/uuid.h ++ optional withDocs doxygen ++ optional withLibAvSupport libav #TODO: package rubygem-ronn and put it here diff --git a/pkgs/applications/science/robotics/qgroundcontrol/default.nix b/pkgs/applications/science/robotics/qgroundcontrol/default.nix index 4222336fe9b2..98567c340bc4 100644 --- a/pkgs/applications/science/robotics/qgroundcontrol/default.nix +++ b/pkgs/applications/science/robotics/qgroundcontrol/default.nix @@ -2,7 +2,7 @@ , qtbase, qtlocation, qtserialport, qtdeclarative, qtconnectivity, qtxmlpatterns , qtsvg, qtquick1, qtquickcontrols, qtgraphicaleffects, qmakeHook , makeQtWrapper, lndir - , gst_all_1, qt_gstreamer1, pkgconfig, glibc + , gst_all_1, qt-gstreamer1, pkgconfig, glibc , version ? "2.9.4" }: diff --git a/pkgs/applications/version-management/git-and-tools/default.nix b/pkgs/applications/version-management/git-and-tools/default.nix index d68b1e41c8d5..b9b7f2e543ff 100644 --- a/pkgs/applications/version-management/git-and-tools/default.nix +++ b/pkgs/applications/version-management/git-and-tools/default.nix @@ -58,6 +58,8 @@ rec { git-crypt = callPackage ./git-crypt { }; + git-dit = callPackage ./git-dit { }; + git-extras = callPackage ./git-extras { }; git-hub = callPackage ./git-hub { }; diff --git a/pkgs/applications/version-management/git-and-tools/git-dit/default.nix b/pkgs/applications/version-management/git-and-tools/git-dit/default.nix new file mode 100644 index 000000000000..a4b552bcca37 --- /dev/null +++ b/pkgs/applications/version-management/git-and-tools/git-dit/default.nix @@ -0,0 +1,46 @@ +{ stdenv, fetchFromGitHub, pandoc }: + +stdenv.mkDerivation rec { + name = "git-dit-${version}"; + version = "0.1.0"; + + buildInputs = [ pandoc ]; + + src = fetchFromGitHub { + owner = "neithernut"; + repo = "git-dit"; + rev = "v${version}"; + sha256 = "1rvp2dhnb8yqrracvfpvf8z1vz4fs0rii18hhrskr6n1sfd7x9kd"; + }; + + # the Makefile doesn’t work, we emulate it below + dontBuild = true; + + postPatch = '' + # resolve binaries to the right path + sed -e "s|exec git-dit-|exec $out/bin/git-dit-|" -i git-dit + + # we change every git dit command to the local subcommand path + # (git dit foo -> /nix/store/…-git-dit/bin/git-dit-foo) + for script in git-dit-*; do + sed -e "s|git dit |$out/bin/git-dit-|g" -i "$script" + done + ''; + + installPhase = '' + mkdir -p $out/{bin,share/man/man1} + # from the Makefile + ${stdenv.lib.getBin pandoc}/bin/pandoc -s -t man git-dit.1.md \ + -o $out/share/man/man1/git-dit.1 + cp git-dit* $out/bin + ''; + + meta = with stdenv.lib; { + inherit (src.meta) homepage; + description = "Decentralized Issue Tracking for git"; + license = licenses.gpl2; + maintainers = with maintainers; [ profpatsch matthiasbeyer ]; + }; + + +} diff --git a/pkgs/applications/version-management/git-and-tools/git/default.nix b/pkgs/applications/version-management/git-and-tools/git/default.nix index c93015678e27..af5fc8a8be46 100644 --- a/pkgs/applications/version-management/git-and-tools/git/default.nix +++ b/pkgs/applications/version-management/git-and-tools/git/default.nix @@ -11,7 +11,7 @@ }: let - version = "2.11.1"; + version = "2.12.0"; svn = subversionClient.override { perlBindings = true; }; in @@ -20,7 +20,7 @@ stdenv.mkDerivation { src = fetchurl { url = "https://www.kernel.org/pub/software/scm/git/git-${version}.tar.xz"; - sha256 = "05b4jw86w77c3pyh3nm6aw31vhxwzvhnx2x0bcfqmm15wg57k9y0"; + sha256 = "09r0lcjj5v2apj39f0ziqzjq2bi1jpnhszc9q4n0ab86g5j7c88q"; }; hardeningDisable = [ "format" ]; diff --git a/pkgs/applications/version-management/kdesvn/default.nix b/pkgs/applications/version-management/kdesvn/default.nix deleted file mode 100644 index d4c67776b529..000000000000 --- a/pkgs/applications/version-management/kdesvn/default.nix +++ /dev/null @@ -1,30 +0,0 @@ -{ stdenv, fetchurl, automoc4, cmake, gettext, perl, pkgconfig -, apr, aprutil, subversion, db, kdelibs, expat -}: - -# the homepage mentions this is the final release. -# from now on, kdesvn will be part of the official kde software distribution -stdenv.mkDerivation rec { - name = "kdesvn-1.6.0"; - - src = fetchurl rec { - url = "http://pkgs.fedoraproject.org/repo/pkgs/kdesvn/${name}.tar.bz2/7e6adc98ff4777a06d5752d3f2b58fa3/${name}.tar.bz2"; - sha256 = "15hg6xyx5rqldfhi1yhq5ss15y6crm2is3zqm680z0bndcj6ys05"; - }; - - prePatch = '' - sed -i -e "s|/usr|${subversion.dev}|g" src/svnqt/cmakemodules/FindSubversion.cmake - ''; - - buildInputs = [ apr aprutil subversion db kdelibs expat ]; - - nativeBuildInputs = [ automoc4 cmake gettext perl pkgconfig ]; - - meta = { - description = "KDE SVN front-end"; - license = "GPL"; - homepage = http://kdesvn.alwins-world.de; - maintainers = [ stdenv.lib.maintainers.sander ]; - inherit (kdelibs.meta) platforms; - }; -} diff --git a/pkgs/applications/video/bangarang/default.nix b/pkgs/applications/video/bangarang/default.nix deleted file mode 100644 index ceece8879dcb..000000000000 --- a/pkgs/applications/video/bangarang/default.nix +++ /dev/null @@ -1,34 +0,0 @@ -{ stdenv, fetchurl, automoc4, cmake, perl, pkgconfig -, kdelibs, phonon, soprano, shared_desktop_ontologies -, kdemultimedia, taglib, glibc, gettext -}: - -stdenv.mkDerivation rec { - name = "bangarang-2.1"; - - src = fetchurl { - url = "http://bangarangissuetracking.googlecode.com/files/${name}.tar.gz"; - sha256 = "1g4pap79k8qaqi0py34xqvisxln1nc5hbvph692ah3af06n6cly1"; - }; - - buildInputs = [ - kdelibs phonon soprano shared_desktop_ontologies kdemultimedia - taglib gettext - ]; - - nativeBuildInputs = [ automoc4 cmake perl pkgconfig ]; - - patches = [ ./gcc-4.7.patch ]; - - meta = with stdenv.lib; { - description = "A media player for KDE based on Nepomuk and Phonon"; - longDescription = '' - Bangarang offers a minimalistic media center user interface, - media collection management, playlists and statistics. - ''; - homepage = http://bangarangkde.wordpress.com/; - license = stdenv.lib.licenses.gpl3; - maintainers = [ maintainers.phreedom maintainers.urkud ]; - platforms = platforms.linux; - }; -} diff --git a/pkgs/applications/video/bangarang/gcc-4.7.patch b/pkgs/applications/video/bangarang/gcc-4.7.patch deleted file mode 100644 index d4f650b9caf5..000000000000 --- a/pkgs/applications/video/bangarang/gcc-4.7.patch +++ /dev/null @@ -1,45 +0,0 @@ -commit b893fcdb7ddfc8c59fd29a29b7265a713c3dbab1 -Author: Alex Fiestas <afiestas@kde.org> -Date: Thu Mar 29 10:09:22 2012 +0200 - - Build fix: Add unistd.h include since sleep is defined there - -diff --git a/src/platform/infofetchers/lastfminfofetcher.cpp b/src/platform/infofetchers/lastfminfofetcher.cpp -index 0c49d69..fcc4cd3 100644 ---- a/src/platform/infofetchers/lastfminfofetcher.cpp -+++ b/src/platform/infofetchers/lastfminfofetcher.cpp -@@ -32,6 +32,8 @@ - #include <QFile> - #include <QTextEdit> - -+#include <unistd.h> -+ - LastfmInfoFetcher::LastfmInfoFetcher(QObject *parent) : - InfoFetcher(parent) - { -diff --git a/src/platform/infofetchers/tmdbinfofetcher.cpp b/src/platform/infofetchers/tmdbinfofetcher.cpp -index 7801644..3c01960 100644 ---- a/src/platform/infofetchers/tmdbinfofetcher.cpp -+++ b/src/platform/infofetchers/tmdbinfofetcher.cpp -@@ -30,6 +30,8 @@ - #include <QDomDocument> - #include <QFile> - -+#include <unistd.h> -+ - TMDBInfoFetcher::TMDBInfoFetcher(QObject *parent) : - InfoFetcher(parent) - { -diff --git a/src/platform/infofetchers/tvdbinfofetcher.cpp b/src/platform/infofetchers/tvdbinfofetcher.cpp -index ff351b0..670ed18 100644 ---- a/src/platform/infofetchers/tvdbinfofetcher.cpp -+++ b/src/platform/infofetchers/tvdbinfofetcher.cpp -@@ -30,6 +30,8 @@ - #include <QDomDocument> - #include <QFile> - -+#include <unistd.h> -+ - TVDBInfoFetcher::TVDBInfoFetcher(QObject *parent) : - InfoFetcher(parent) - { diff --git a/pkgs/applications/video/kdenlive/default.nix b/pkgs/applications/video/kdenlive/default.nix deleted file mode 100644 index 3da5180352c6..000000000000 --- a/pkgs/applications/video/kdenlive/default.nix +++ /dev/null @@ -1,41 +0,0 @@ -{ stdenv, fetchurl, frei0r, lib, cmake, qt4, perl, kdelibs, automoc4 -, phonon , makeWrapper, mlt, gettext , qimageblitz, qjson -, shared_mime_info, soprano, pkgconfig, shared_desktop_ontologies -, libv4l, oxygen_icons -}: - -stdenv.mkDerivation rec { - name = "kdenlive-${version}"; - version = "0.9.10"; - - src = fetchurl { - url = "mirror://kde/stable/kdenlive/${version}/src/${name}.tar.bz2"; - sha256 = "0qxpxnfbr8g6xq0h32skgqqi2xylrv2bnmyx5x1cws9y2wwxp3zn"; - }; - - buildInputs = [ - frei0r kdelibs libv4l mlt phonon qimageblitz qjson qt4 - shared_desktop_ontologies soprano - ]; - - nativeBuildInputs = [ - automoc4 cmake gettext makeWrapper perl pkgconfig shared_mime_info - ]; - - propagatedUserEnvPkgs = [ oxygen_icons ]; - - enableParallelBuilding = true; - - postInstall = '' - wrapProgram $out/bin/kdenlive --prefix FREI0R_PATH : ${frei0r}/lib/frei0r-1 - wrapProgram $out/bin/kdenlive_render --prefix FREI0R_PATH : ${frei0r}/lib/frei0r-1 - ''; - - meta = { - description = "Free and open source video editor"; - license = stdenv.lib.licenses.gpl2Plus; - homepage = http://www.kdenlive.org/; - maintainers = with stdenv.lib.maintainers; [ goibhniu viric ]; - platforms = with stdenv.lib.platforms; linux; - }; -} diff --git a/pkgs/applications/video/kmplayer/default.nix b/pkgs/applications/video/kmplayer/default.nix index cbd0347078ef..59b9893ded14 100644 --- a/pkgs/applications/video/kmplayer/default.nix +++ b/pkgs/applications/video/kmplayer/default.nix @@ -1,6 +1,6 @@ { stdenv, fetchurl , automoc4, cmake, gettext, makeWrapper, perl, pkgconfig -, kdelibs, cairo, dbus_glib, mplayer +, kdelibs4, cairo, dbus_glib, mplayer }: stdenv.mkDerivation { @@ -12,7 +12,7 @@ stdenv.mkDerivation { sha256 = "1yvbkb1hh5y7fqfvixjf2rryzm0fm0fpkx4lmvhi7k7d0v4wpgky"; }; - buildInputs = [ kdelibs cairo dbus_glib ]; + buildInputs = [ kdelibs4 cairo dbus_glib ]; nativeBuildInputs = [ automoc4 cmake gettext makeWrapper perl pkgconfig ]; diff --git a/pkgs/applications/video/kodi/default.nix b/pkgs/applications/video/kodi/default.nix index ee0be6419aa0..d7625b8ebacc 100644 --- a/pkgs/applications/video/kodi/default.nix +++ b/pkgs/applications/video/kodi/default.nix @@ -100,7 +100,7 @@ in stdenv.mkDerivation rec { ./bootstrap ''; - configureFlags = [ ] + configureFlags = [ "--enable-libcec" ] ++ lib.optional (!sambaSupport) "--disable-samba" ++ lib.optional vdpauSupport "--enable-vdpau" ++ lib.optional pulseSupport "--enable-pulse" diff --git a/pkgs/applications/video/miro/default.nix b/pkgs/applications/video/miro/default.nix index 0652ac7e6642..0efa4aba2767 100644 --- a/pkgs/applications/video/miro/default.nix +++ b/pkgs/applications/video/miro/default.nix @@ -2,7 +2,7 @@ , pythonPackages, pyrex096, ffmpeg, boost, glib, gtk2, webkitgtk2, libsoup , taglib, sqlite , libtorrentRasterbar, glib_networking, gsettings_desktop_schemas -, gst_python, gst_plugins_base, gst_plugins_good, gst_ffmpeg +, gst-python, gst-plugins-base, gst-plugins-good, gst-ffmpeg , enableBonjour ? false, avahi ? null }: @@ -77,7 +77,7 @@ in buildPythonApplication rec { propagatedBuildInputs = with pythonPackages; [ pygobject2 pygtk pycurl mutagen pycairo dbus-python pywebkitgtk] ++ [ libtorrentRasterbar - gst_python gst_plugins_base gst_plugins_good gst_ffmpeg + gst-python gst-plugins-base gst-plugins-good gst-ffmpeg ] ++ optional enableBonjour avahi; meta = { diff --git a/pkgs/applications/video/mpv/default.nix b/pkgs/applications/video/mpv/default.nix index 960dabd75695..3a5313b78279 100644 --- a/pkgs/applications/video/mpv/default.nix +++ b/pkgs/applications/video/mpv/default.nix @@ -31,7 +31,7 @@ , libpngSupport ? true, libpng ? null , youtubeSupport ? true, youtube-dl ? null , vaapiSupport ? true, libva ? null -, drmSupport ? true, libdrm ? null +, drmSupport ? !stdenv.isDarwin, libdrm ? null , vapoursynthSupport ? false, vapoursynth ? null , jackaudioSupport ? false, libjack2 ? null @@ -79,13 +79,13 @@ let }; in stdenv.mkDerivation rec { name = "mpv-${version}"; - version = "0.23.0"; + version = "0.24.0"; src = fetchFromGitHub { owner = "mpv-player"; repo = "mpv"; rev = "v${version}"; - sha256 = "02k8p4z1mwxxlg9spwwrlcciia80kyrpp09hpl60g22h85jj1ng9"; + sha256 = "1aq1lvhw4l0i2gc9x6ijaaj2h3894jbcpd4j055n0y9vg9vqm6yy"; }; patchPhase = '' @@ -114,7 +114,9 @@ in stdenv.mkDerivation rec { buildInputs = [ ffmpeg_3_2 freetype libass libpthreadstubs lua lua5_sockets libuchardet - ] ++ optional alsaSupport alsaLib + ] ++ optionals stdenv.isDarwin (with darwin.apple_sdk.frameworks; [ + libiconv Cocoa CoreAudio ]) + ++ optional alsaSupport alsaLib ++ optional xvSupport libXv ++ optional theoraSupport libtheora ++ optional xineramaSupport libXinerama @@ -122,9 +124,6 @@ in stdenv.mkDerivation rec { ++ optional bluraySupport libbluray ++ optional jackaudioSupport libjack2 ++ optional pulseSupport libpulseaudio - ++ optional stdenv.isDarwin libiconv - ++ optionals stdenv.isDarwin (with darwin.apple_sdk.frameworks; [ - Cocoa CoreAudio ]) ++ optional rubberbandSupport rubberband ++ optional screenSaverSupport libXScrnSaver ++ optional vdpauSupport libvdpau @@ -171,7 +170,7 @@ in stdenv.mkDerivation rec { description = "A media player that supports many video formats (MPlayer and mplayer2 fork)"; homepage = http://mpv.io; license = licenses.gpl2Plus; - maintainers = with maintainers; [ AndersonTorres fuuzetsu ]; + maintainers = with maintainers; [ AndersonTorres fuuzetsu fpletz ]; platforms = platforms.darwin ++ platforms.linux; longDescription = '' diff --git a/pkgs/applications/virtualization/qemu/default.nix b/pkgs/applications/virtualization/qemu/default.nix index d7910eb938fc..b201e2299310 100644 --- a/pkgs/applications/virtualization/qemu/default.nix +++ b/pkgs/applications/virtualization/qemu/default.nix @@ -51,7 +51,39 @@ stdenv.mkDerivation rec { patches = [ ./no-etc-install.patch + + (fetchurl { + name = "CVE-2017-2615.patch"; + url = "http://git.qemu-project.org/?p=qemu.git;a=patch;h=62d4c6bd5263bb8413a06c80144fc678df6dfb64"; + sha256 = "0miph2x4d474issa44hmc542zxmkc7lsr4ncb7pwarq6j7v52l8h"; + }) + + (fetchurl { + name = "CVE-2017-5667.patch"; + url = "http://git.qemu-project.org/?p=qemu.git;a=patch;h=42922105beb14c2fc58185ea022b9f72fb5465e9"; + sha256 = "049vq70is3fj9bf4ysfj3s44iz93qhyqn6xijck32w1x6yyzqyx4"; + }) + + (fetchurl { + name = "CVE-2017-5898.patch"; + url = "http://git.qemu-project.org/?p=qemu.git;a=patch;h=c7dfbf322595ded4e70b626bf83158a9f3807c6a"; + sha256 = "1y2j0qw04s8fl0cs8i619y08kj75lxn3c0y19g710fzpk3rq8dvn"; + }) + + (fetchurl { + name = "CVE-2017-5931.patch"; + url = "http://git.qemu-project.org/?p=qemu.git;a=patch;h=a08aaff811fb194950f79711d2afe5a892ae03a4"; + sha256 = "0hlih9jhbb1mb174hvxs7pf7lgcs7s9g705ri9rliw7wrhqdpja5"; + }) + + (fetchurl { + name = "CVE-2017-5973.patch"; + url = "http://git.qemu-project.org/?p=qemu.git;a=patch;h=f89b60f6e5fee3923bedf80e82b4e5efc1bb156b"; + sha256 = "06niyighjxb4p5z2as3mqfmrwrzn4sq47j7raipbq9gnda7x9sw6"; + }) + ] ++ optional nixosTestRunner ./force-uid0-on-9p.patch; + hardeningDisable = [ "stackprotector" ]; configureFlags = diff --git a/pkgs/applications/window-managers/jwm/default.nix b/pkgs/applications/window-managers/jwm/default.nix index c670dc52e52d..2082f48d2577 100644 --- a/pkgs/applications/window-managers/jwm/default.nix +++ b/pkgs/applications/window-managers/jwm/default.nix @@ -5,13 +5,13 @@ stdenv.mkDerivation rec { name = "jwm-${version}"; - version = "1580"; + version = "1582"; src = fetchFromGitHub { owner = "joewing"; repo = "jwm"; rev = "s${version}"; - sha256 = "098m54mn8f1vzdb7j6zmlflid7a4yjinbdh7avg2a0z45nl1znb4"; + sha256 = "1z6cxf18n69sjd20bbyxrnd19hhy955ddvakgpfyhiprpfjkkv70"; }; nativeBuildInputs = [ pkgconfig automake autoconf libtool gettext which ]; diff --git a/pkgs/build-support/kde/derivation.nix b/pkgs/build-support/kde/derivation.nix new file mode 100644 index 000000000000..2e29a0a661e1 --- /dev/null +++ b/pkgs/build-support/kde/derivation.nix @@ -0,0 +1,17 @@ +{ stdenv, lib, debug ? false }: + +args: + +stdenv.mkDerivation (args // { + + outputs = args.outputs or [ "out" "dev" ]; + + propagatedUserEnvPkgs = + builtins.map lib.getBin (args.propagatedBuildInputs or []); + + cmakeFlags = + (args.cmakeFlags or []) + ++ [ "-DBUILD_TESTING=OFF" ] + ++ lib.optional debug "-DCMAKE_BUILD_TYPE=Debug"; + +}) diff --git a/pkgs/development/libraries/kde-frameworks/kde-wrapper.nix b/pkgs/build-support/kde/wrapper.nix index f5add12e8eca..f5add12e8eca 100644 --- a/pkgs/development/libraries/kde-frameworks/kde-wrapper.nix +++ b/pkgs/build-support/kde/wrapper.nix diff --git a/pkgs/build-support/kdewrapper/default.nix b/pkgs/build-support/kdewrapper/default.nix deleted file mode 100644 index 64dfd7d0ca6b..000000000000 --- a/pkgs/build-support/kdewrapper/default.nix +++ /dev/null @@ -1,44 +0,0 @@ -{ stdenv, kde4, shared_mime_info, extraLibs ? [] }: - -/* Supply a KDE program, and it will have the necessary KDE vars to - get icons, mime types, etc. working. - For example: - - packageOverrides = pkgs : { - kdenliveWrapped = kde4.wrapper kde4.kdenlive; - }; - */ -program: - -let - libs = with kde4; [ kdelibs kde_runtime oxygen_icons shared_mime_info ] - ++ extraLibs; -in -stdenv.mkDerivation { - name = program.name + "-wrapped"; - - inherit libs; - - buildCommand = '' - mkdir -p $out/bin - - KDEDIRS=${program} - QT_PLUGIN_PATH=${program}/lib/qt4/plugins:${program}/lib/kde4/plugins - for a in $libs; do - KDEDIRS=$a''${KDEDIRS:+:}$KDEDIRS - QT_PLUGIN_PATH=$a/lib/qt4/plugins:$a/lib/kde4/plugins''${QT_PLUGIN_PATH:+:}$QT_PLUGIN_PATH - done - for a in ${program}/bin/*; do - PROG=$out/bin/`basename $a` - cat > $PROG << END - #!/bin/sh - export KDEDIRS=$KDEDIRS\''${KDEDIRS:+:}\$KDEDIRS - export QT_PLUGIN_PATH=$QT_PLUGIN_PATH\''${QT_PLUGIN_PATH:+:}\$QT_PLUGIN_PATH - exec $a "\$@" - END - chmod +x $PROG - done - ''; - - preferLocalBuild = true; -} diff --git a/pkgs/build-support/vm/default.nix b/pkgs/build-support/vm/default.nix index 562344dfcf72..19a3f24a470d 100644 --- a/pkgs/build-support/vm/default.nix +++ b/pkgs/build-support/vm/default.nix @@ -866,7 +866,7 @@ rec { fullName = "Fedora 10 (i386)"; packagesList = fetchurl { url = mirror://fedora/linux/releases/10/Everything/i386/os/repodata/beeea88d162e76993c25b9dd8139868274ee7fa1-primary.xml.gz; - sha1 = "beeea88d162e76993c25b9dd8139868274ee7fa1"; + sha256 = "17lyvzqjsxw3ll7726dpg14f9jc2p3fz5cr5cwd8hp3rkm5nfclv"; }; urlPrefix = mirror://fedora/linux/releases/10/Everything/i386/os; packages = commonFedoraPackages ++ [ "cronie" "util-linux-ng" ]; @@ -877,7 +877,7 @@ rec { fullName = "Fedora 10 (x86_64)"; packagesList = fetchurl { url = mirror://fedora/linux/releases/10/Everything/x86_64/os/repodata/7958210175e86b5cc843cf4bd0bc8659e445e261-primary.xml.gz; - sha1 = "7958210175e86b5cc843cf4bd0bc8659e445e261"; + sha256 = "02pzqmb26zmmzdni11dip3bar4kr54ddsrq9z4vda7ldwwkqd3py"; }; urlPrefix = mirror://fedora/linux/releases/10/Everything/x86_64/os; archs = ["noarch" "x86_64"]; @@ -1325,7 +1325,7 @@ rec { fullName = "Ubuntu 7.10 Gutsy (i386)"; packagesList = fetchurl { url = mirror://ubuntu/dists/gutsy/main/binary-i386/Packages.bz2; - sha1 = "8b52ee3d417700e2b2ee951517fa25a8792cabfd"; + sha256 = "0fmac8svxq86a4w878g6syczvy5ff4jrdc1gajd3xd8z0dypnw27"; }; urlPrefix = mirror://ubuntu; packages = commonDebianPackages; @@ -1336,7 +1336,7 @@ rec { fullName = "Ubuntu 8.04 Hardy (i386)"; packagesList = fetchurl { url = mirror://ubuntu/dists/hardy/main/binary-i386/Packages.bz2; - sha1 = "db74581ee75cb3bee2a8ae62364e97956c723259"; + sha256 = "19132nc9fhdfmgmvn834lk0d8c0n3jv0ndz9inyynh9k6pc8b5hd"; }; urlPrefix = mirror://ubuntu; packages = commonDebianPackages; @@ -1347,7 +1347,7 @@ rec { fullName = "Ubuntu 8.04 Hardy (amd64)"; packagesList = fetchurl { url = mirror://ubuntu/dists/hardy/main/binary-amd64/Packages.bz2; - sha1 = "d1f1d2b3cc62533d6e4337f2696a5d27235d1f28"; + sha256 = "1xjcgh0ydixmim7kgxss0mhfw0sibpgygvgsyac4bdz9m503sj3h"; }; urlPrefix = mirror://ubuntu; packages = commonDebianPackages; @@ -1411,7 +1411,7 @@ rec { ubuntu910x86_64 = { name = "ubuntu-9.10-karmic-amd64"; fullName = "Ubuntu 9.10 Karmic (amd64)"; - packagesList = fetchurl { + packagesList = fetchurl { url = mirror://ubuntu/dists/karmic/main/binary-amd64/Packages.bz2; sha256 = "3a604fcb0c135eeb8b95da3e90a8fd4cfeff519b858cd3c9e62ea808cb9fec40"; }; diff --git a/pkgs/data/icons/moka-icon-theme/default.nix b/pkgs/data/icons/moka-icon-theme/default.nix index 0ffe2411c4fa..57dfe0797fac 100644 --- a/pkgs/data/icons/moka-icon-theme/default.nix +++ b/pkgs/data/icons/moka-icon-theme/default.nix @@ -3,13 +3,13 @@ stdenv.mkDerivation rec { name = "${package-name}-${version}"; package-name = "moka-icon-theme"; - version = "2016-10-06"; + version = "2017-02-13"; src = fetchFromGitHub { owner = "snwh"; repo = package-name; - rev = "50894ee9411721649019cd168b8ae2c85f4b5cf0"; - sha256 = "1dlpsgqsn731ra5drkx72wljcgv1zydgldy4nn5bbia9s5w8mfgs"; + rev = "5ac530d2394574bdbd5360de46391d0dfc7aa2ab"; + sha256 = "1zw1jm03706086gnplkkrdlrcyhgwm9kp4qax57wwc1s27bhc90n"; }; nativeBuildInputs = [ autoreconfHook ]; diff --git a/pkgs/data/icons/numix-icon-theme/default.nix b/pkgs/data/icons/numix-icon-theme/default.nix index 8732172ead4c..7f6a3fe48d79 100644 --- a/pkgs/data/icons/numix-icon-theme/default.nix +++ b/pkgs/data/icons/numix-icon-theme/default.nix @@ -1,7 +1,7 @@ { stdenv, fetchFromGitHub }: stdenv.mkDerivation rec { - version = "2016-11-13"; + version = "2017-01-25"; package-name = "numix-icon-theme"; @@ -10,8 +10,8 @@ stdenv.mkDerivation rec { src = fetchFromGitHub { owner = "numixproject"; repo = package-name; - rev = "45878a1195abd997341c91d51381625644f9a356"; - sha256 = "0in7vx8mdwbfkgylh9p95kcsnn7dnv2vpmv788n0bbgldxmrldga"; + rev = "271471c7944d592a1d666910de0adce82a393d31"; + sha256 = "1yc9jk1233ybk6cd7q4x3q87rwgq9nkcgkn9fw9si422dkvnwd7h"; }; dontBuild = true; diff --git a/pkgs/data/icons/paper-icon-theme/default.nix b/pkgs/data/icons/paper-icon-theme/default.nix index 13adb7efaafc..e0ea56831b4d 100644 --- a/pkgs/data/icons/paper-icon-theme/default.nix +++ b/pkgs/data/icons/paper-icon-theme/default.nix @@ -3,13 +3,13 @@ stdenv.mkDerivation rec { name = "${package-name}-${version}"; package-name = "paper-icon-theme"; - version = "2016-11-05"; + version = "2017-02-13"; src = fetchFromGitHub { owner = "snwh"; repo = package-name; - rev = "2a1f25a47fe8fb92e9d4db5537bbddb539586602"; - sha256 = "0v956wrfraaj5qznz86q7s3zi55xd3gxmg7pzcfsw2ghgfv13swd"; + rev = "fcaf8bb2aacdd1bb7dcde3d45ef92d0751567e8e"; + sha256 = "1l1w99411jrv4l7jr5dvwszghrncsir23c7lpc26gh2f0ydf3d0d"; }; nativeBuildInputs = [ autoreconfHook ]; diff --git a/pkgs/data/misc/iana-etc/default.nix b/pkgs/data/misc/iana-etc/default.nix index 6adb45758392..f20b992ab727 100644 --- a/pkgs/data/misc/iana-etc/default.nix +++ b/pkgs/data/misc/iana-etc/default.nix @@ -4,14 +4,14 @@ stdenv.mkDerivation rec { name = "iana-etc-2.30"; src = fetchurl { - url = "http://sethwklein.net/projects/iana-etc/downloads/${name}.tar.bz2"; + url = "http://sethwklein.net/${name}.tar.bz2"; sha256 = "03gjlg5zlwsdk6qyw3v85l129rna5bpm4m7pzrp864h0n97qg9mr"; }; preInstall = "installFlags=\"PREFIX=$out\""; meta = { - homepage = http://sethwklein.net/projects/iana-etc/; + homepage = http://sethwklein.net/iana-etc; description = "IANA protocol and port number assignments (/etc/protocols and /etc/services)"; platforms = stdenv.lib.platforms.unix; }; diff --git a/pkgs/desktops/gnome-3/3.22/core/gnome-shell/default.nix b/pkgs/desktops/gnome-3/3.22/core/gnome-shell/default.nix index dccdb8a5a5f8..8f77b7e5e3b1 100644 --- a/pkgs/desktops/gnome-3/3.22/core/gnome-shell/default.nix +++ b/pkgs/desktops/gnome-3/3.22/core/gnome-shell/default.nix @@ -7,7 +7,9 @@ # http://sources.gentoo.org/cgi-bin/viewvc.cgi/gentoo-x86/gnome-base/gnome-shell/gnome-shell-3.10.2.1.ebuild?revision=1.3&view=markup -stdenv.mkDerivation rec { +let + pythonEnv = python3Packages.python.withPackages ( ps: with ps; [ pygobject3 ] ); +in stdenv.mkDerivation rec { inherit (import ./src.nix fetchurl) name src; # Needed to find /etc/NetworkManager/VPN @@ -23,9 +25,8 @@ stdenv.mkDerivation rec { defaultIconTheme sqlite gnome3.gnome-bluetooth libgweather # not declared at build time, but typelib is needed at runtime gnome3.gnome-clocks # schemas needed - at_spi2_core upower ibus gnome_desktop telepathy_logger gnome3.gnome_settings_daemon ]; - - propagatedBuildInputs = [ python3Packages.pygobject3 python3Packages.python gobjectIntrospection ]; + at_spi2_core upower ibus gnome_desktop telepathy_logger gnome3.gnome_settings_daemon + pythonEnv gobjectIntrospection ]; installFlags = [ "keysdir=$(out)/share/gnome-control-center/keybindings" ]; @@ -42,9 +43,6 @@ stdenv.mkDerivation rec { --prefix XDG_DATA_DIRS : "${gnome_themes_standard}/share:$out/share:$XDG_ICON_DIRS" \ --suffix XDG_DATA_DIRS : "$GSETTINGS_SCHEMAS_PATH" - wrapProgram "$out/bin/gnome-shell-extension-tool" \ - --prefix PYTHONPATH : "${python3Packages.pygobject3}/${python3Packages.python.sitePackages}:$PYTHONPATH" - wrapProgram "$out/libexec/gnome-shell-calendar-server" \ --prefix XDG_DATA_DIRS : "${evolution_data_server}/share:$out/share:$XDG_ICON_DIRS:$GSETTINGS_SCHEMAS_PATH" diff --git a/pkgs/desktops/gnome-3/3.22/misc/gnome-tweak-tool/default.nix b/pkgs/desktops/gnome-3/3.22/misc/gnome-tweak-tool/default.nix index f75cdd0e83e2..5a1baa5e3307 100644 --- a/pkgs/desktops/gnome-3/3.22/misc/gnome-tweak-tool/default.nix +++ b/pkgs/desktops/gnome-3/3.22/misc/gnome-tweak-tool/default.nix @@ -4,7 +4,7 @@ , gnome3, librsvg, gdk_pixbuf, file, libnotify, gobjectIntrospection, wrapGAppsHook }: let - python = python2Packages.python.withPackages ( ps: with ps; [ pygobject3 ] ); + pythonEnv = python2Packages.python.withPackages ( ps: with ps; [ pygobject3 ] ); in stdenv.mkDerivation rec { inherit (import ./src.nix fetchurl) name src; @@ -12,15 +12,6 @@ in stdenv.mkDerivation rec { propagatedUserEnvPkgs = [ gnome3.gnome_themes_standard ]; - # Make sure that Python 2 is first in $PATH because gnome3.gnome_shell - # propagates python3Packages.python. If we do not do this, autoconf will use - # Python 3 instead which gnome-tweak-tool does not support at this time. See: - # https://github.com/NixOS/nixpkgs/issues/21851 - # https://github.com/NixOS/nixpkgs/pull/22370 - preConfigure = '' - PATH="${python}/bin:$PATH" - ''; - makeFlags = [ "DESTDIR=/" ]; buildInputs = [ pkgconfig gtk3 glib intltool itstool libxml2 @@ -28,11 +19,10 @@ in stdenv.mkDerivation rec { gdk_pixbuf gnome3.defaultIconTheme librsvg libnotify gnome3.gnome_shell libsoup gnome3.gnome_settings_daemon gnome3.nautilus - gnome3.gnome_desktop wrapGAppsHook ]; - - propagatedBuildInputs = [ python gobjectIntrospection ]; + gnome3.gnome_desktop wrapGAppsHook + python2Packages.pygobject3.dev pythonEnv gobjectIntrospection ]; - PYTHONPATH = "$out/${python.python.sitePackages}"; + PYTHONPATH = "$out/${pythonEnv.python.sitePackages}"; wrapPrefixVariables = [ "PYTHONPATH" ]; diff --git a/pkgs/desktops/gnome-3/3.22/misc/pomodoro/default.nix b/pkgs/desktops/gnome-3/3.22/misc/pomodoro/default.nix index 8c1ab41de520..3ceabe70ad80 100644 --- a/pkgs/desktops/gnome-3/3.22/misc/pomodoro/default.nix +++ b/pkgs/desktops/gnome-3/3.22/misc/pomodoro/default.nix @@ -1,5 +1,5 @@ { stdenv, fetchFromGitHub, which, automake113x, intltool, pkgconfig, libtool, makeWrapper, - dbus_glib, libcanberra_gtk2, gst_all_1, vala_0_32, gnome3, gtk3, gst_plugins_base, + dbus_glib, libcanberra_gtk2, gst_all_1, vala_0_32, gnome3, gtk3, gst-plugins-base, glib, gobjectIntrospection, telepathy_glib }: diff --git a/pkgs/desktops/kde-4.14/applications/kate.nix b/pkgs/desktops/kde-4.14/applications/kate.nix deleted file mode 100644 index ddeb89063e50..000000000000 --- a/pkgs/desktops/kde-4.14/applications/kate.nix +++ /dev/null @@ -1,11 +0,0 @@ -{ stdenv, kde, kdelibs, kactivities, qjson, pythonPackages, pykde4}: - -kde { - - buildInputs = [ kdelibs kactivities qjson pythonPackages.pyqt4 pythonPackages.python pykde4 ]; - - meta = { - description = "Kate, the KDE Advanced Text Editor, as well as KWrite"; - license = stdenv.lib.licenses.gpl2; - }; -} diff --git a/pkgs/desktops/kde-4.14/applications/konsole.nix b/pkgs/desktops/kde-4.14/applications/konsole.nix deleted file mode 100644 index bd4e9e58cd05..000000000000 --- a/pkgs/desktops/kde-4.14/applications/konsole.nix +++ /dev/null @@ -1,11 +0,0 @@ -{ stdenv, kde, kdelibs, kde_baseapps }: - -kde { - - buildInputs = [ kdelibs kde_baseapps ]; - - meta = { - description = "Konsole, the KDE terminal emulator"; - license = stdenv.lib.licenses.gpl2; - }; -} diff --git a/pkgs/desktops/kde-4.14/default.nix b/pkgs/desktops/kde-4.14/default.nix index f11a139aec72..02cd509537d1 100644 --- a/pkgs/desktops/kde-4.14/default.nix +++ b/pkgs/desktops/kde-4.14/default.nix @@ -25,20 +25,10 @@ in kde.modules // kde.individual // { - inherit (kde) manifest modules individual splittedModuleList; - - inherit kdelibs; - akonadi = callPackage ./support/akonadi { }; - qt4 = qt48; - - kdebase_workspace = kde.modules.kde_workspace; - inherit release; - full = stdenv.lib.attrValues kde.modules; - l10n = callPackage ./l10n { inherit release branch; inherit (kde.manifest) stable; diff --git a/pkgs/desktops/kde-4.14/files/kde-wallpapers-buildsystem.patch b/pkgs/desktops/kde-4.14/files/kde-wallpapers-buildsystem.patch deleted file mode 100644 index 378cdb646940..000000000000 --- a/pkgs/desktops/kde-4.14/files/kde-wallpapers-buildsystem.patch +++ /dev/null @@ -1,17 +0,0 @@ -diff --git a/CMakeLists.txt b/CMakeLists.txt -index 3d3e247..f78db67 100644 ---- a/CMakeLists.txt -+++ b/CMakeLists.txt -@@ -1,5 +1,10 @@ --find_package(KDE4 REQUIRED) --include(KDE4Defaults) -+project(kde-wallpapers NONE) -+if( WALLPAPER_INSTALL_DIR ) -+ message(STATUS "Installing wallpapers to user-supplied directory ${WALLPAPER_INSTALL_DIR}") -+else() -+ find_package(KDE4 REQUIRED) -+ include(KDE4Defaults) -+endif() - - install(DIRECTORY Air DESTINATION ${WALLPAPER_INSTALL_DIR} PATTERN .svn EXCLUDE) - diff --git a/pkgs/desktops/kde-4.14/files/rocs-0001-duplicate-add_test.patch b/pkgs/desktops/kde-4.14/files/rocs-0001-duplicate-add_test.patch deleted file mode 100644 index 4127b16d5f6d..000000000000 --- a/pkgs/desktops/kde-4.14/files/rocs-0001-duplicate-add_test.patch +++ /dev/null @@ -1,62 +0,0 @@ -From 93081f817f20bbc26b55e1b37b22d60535d153f7 Mon Sep 17 00:00:00 2001 -From: Thomas Tuegel <ttuegel@gmail.com> -Date: Thu, 10 Sep 2015 18:41:57 -0500 -Subject: [PATCH] duplicate add_test - ---- - RocsCore/LoadSave/Plugins/dotFileFormat/Tests/CMakeLists.txt | 1 - - RocsCore/LoadSave/Plugins/gmlFileFormat/Tests/CMakeLists.txt | 1 - - RocsCore/LoadSave/Plugins/kmlFileFormat/Tests/CMakeLists.txt | 1 - - RocsCore/LoadSave/Plugins/tgfFileFormat/Tests/CMakeLists.txt | 1 - - RocsCore/LoadSave/Plugins/tikzFileFormat/Tests/CMakeLists.txt | 1 - - 5 files changed, 5 deletions(-) - -diff --git a/RocsCore/LoadSave/Plugins/dotFileFormat/Tests/CMakeLists.txt b/RocsCore/LoadSave/Plugins/dotFileFormat/Tests/CMakeLists.txt -index 32a2504..4fbb838 100644 ---- a/RocsCore/LoadSave/Plugins/dotFileFormat/Tests/CMakeLists.txt -+++ b/RocsCore/LoadSave/Plugins/dotFileFormat/Tests/CMakeLists.txt -@@ -33,4 +33,3 @@ target_link_libraries(TestDotFileFormatPlugin - ${QT_QTTEST_LIBRARY} - ${KDE4_KDECORE_LIBS} - ) --add_test(TestDotFileFormatPlugin TestDotFileFormatPlugin) -diff --git a/RocsCore/LoadSave/Plugins/gmlFileFormat/Tests/CMakeLists.txt b/RocsCore/LoadSave/Plugins/gmlFileFormat/Tests/CMakeLists.txt -index 615004c..6383bd8 100644 ---- a/RocsCore/LoadSave/Plugins/gmlFileFormat/Tests/CMakeLists.txt -+++ b/RocsCore/LoadSave/Plugins/gmlFileFormat/Tests/CMakeLists.txt -@@ -32,4 +32,3 @@ target_link_libraries(TestGmlFileFormatPlugin - ${QT_QTTEST_LIBRARY} - ${KDE4_KDECORE_LIBS} - ) --add_test(TestGmlFileFormatPlugin TestGmlFileFormatPlugin) -diff --git a/RocsCore/LoadSave/Plugins/kmlFileFormat/Tests/CMakeLists.txt b/RocsCore/LoadSave/Plugins/kmlFileFormat/Tests/CMakeLists.txt -index f9cdbfa..842d14b 100644 ---- a/RocsCore/LoadSave/Plugins/kmlFileFormat/Tests/CMakeLists.txt -+++ b/RocsCore/LoadSave/Plugins/kmlFileFormat/Tests/CMakeLists.txt -@@ -30,4 +30,3 @@ target_link_libraries(TestKmlFileFormatPlugin - ${QT_QTTEST_LIBRARY} - ${KDE4_KDECORE_LIBS} - ) --add_test(TestKmlFileFormatPlugin TestKmlFileFormatPlugin) -diff --git a/RocsCore/LoadSave/Plugins/tgfFileFormat/Tests/CMakeLists.txt b/RocsCore/LoadSave/Plugins/tgfFileFormat/Tests/CMakeLists.txt -index 33c0da8..70cab8d 100644 ---- a/RocsCore/LoadSave/Plugins/tgfFileFormat/Tests/CMakeLists.txt -+++ b/RocsCore/LoadSave/Plugins/tgfFileFormat/Tests/CMakeLists.txt -@@ -35,4 +35,3 @@ target_link_libraries(TestTgfFileFormatPlugin - ${QT_QTTEST_LIBRARY} - ${KDE4_KDECORE_LIBS} - ) --add_test(TestTgfFileFormatPlugin TestTgfFileFormatPlugin) -diff --git a/RocsCore/LoadSave/Plugins/tikzFileFormat/Tests/CMakeLists.txt b/RocsCore/LoadSave/Plugins/tikzFileFormat/Tests/CMakeLists.txt -index b52736e..58ee40e 100644 ---- a/RocsCore/LoadSave/Plugins/tikzFileFormat/Tests/CMakeLists.txt -+++ b/RocsCore/LoadSave/Plugins/tikzFileFormat/Tests/CMakeLists.txt -@@ -29,5 +29,4 @@ target_link_libraries(TestTikzFileFormatPlugin - ${QT_QTTEST_LIBRARY} - ${KDE4_KDECORE_LIBS} - ) --add_test(TestTikzFileFormatPlugin TestTikzFileFormatPlugin) - --- -2.5.0 - diff --git a/pkgs/desktops/kde-4.14/kactivities.nix b/pkgs/desktops/kde-4.14/kactivities.nix index a1f9d0d81719..dd14e0429ddb 100644 --- a/pkgs/desktops/kde-4.14/kactivities.nix +++ b/pkgs/desktops/kde-4.14/kactivities.nix @@ -1,4 +1,4 @@ -{ fetchurl, kde, kdelibs, nepomuk_core }: +{ fetchurl, kde, kdelibs }: kde { @@ -13,7 +13,7 @@ kde { setOutputFlags = false; - propagatedBuildInputs = [ kdelibs nepomuk_core ]; + propagatedBuildInputs = [ kdelibs ]; meta = { description = "KDE activities library and daemon"; diff --git a/pkgs/desktops/kde-4.14/kde-base-artwork.nix b/pkgs/desktops/kde-4.14/kde-base-artwork.nix deleted file mode 100644 index 3f416cebddc4..000000000000 --- a/pkgs/desktops/kde-4.14/kde-base-artwork.nix +++ /dev/null @@ -1,14 +0,0 @@ -{ kde, kdelibs }: - -kde { - outputHashAlgo = "sha256"; - outputHashMode = "recursive"; - outputHash = "0mrd3w7rhsj0v92c8rh9zjxyifq7wyvwszksf2gyn53dzd06blk8"; - - buildInputs = [ kdelibs ]; - - meta = { - description = "KDE Base artwork"; - license = "GPL"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kde-baseapps/kde-baseapps.nix b/pkgs/desktops/kde-4.14/kde-baseapps/kde-baseapps.nix index 98fab7d25592..df211f491993 100644 --- a/pkgs/desktops/kde-4.14/kde-baseapps/kde-baseapps.nix +++ b/pkgs/desktops/kde-4.14/kde-baseapps/kde-baseapps.nix @@ -1,5 +1,4 @@ -{ stdenv, kde, kdelibs, html-tidy, kactivities -, nepomuk_core, nepomuk_widgets, libXt }: +{ stdenv, kde, kdelibs, html-tidy, kactivities, libXt }: kde { postPatch = '' @@ -7,7 +6,7 @@ kde { --replace buffio.h tidybuffio.h ''; - buildInputs = [ kdelibs nepomuk_core nepomuk_widgets html-tidy kactivities libXt ]; + buildInputs = [ kdelibs html-tidy kactivities libXt ]; meta = { description = "Base KDE applications, including the Dolphin file manager and Konqueror web browser"; diff --git a/pkgs/desktops/kde-4.14/kde-package/4.14.3.nix b/pkgs/desktops/kde-4.14/kde-package/4.14.3.nix index a78041c5a0cc..a05e6d0c62a2 100644 --- a/pkgs/desktops/kde-4.14/kde-package/4.14.3.nix +++ b/pkgs/desktops/kde-4.14/kde-package/4.14.3.nix @@ -1,380 +1,48 @@ {stable=true; hashes=builtins.listToAttrs[ - {name="amor";value="1n9qhy7pcprhh7a5v5i9xi5pr3a3lbg08j315kbahn89py2wqk6x";} - {name="analitza";value="08p4rky4q4c1r5mkw087s31k38xvc8k50fyahf6y0bkc03v7q8h0";} - {name="ark";value="1p5q96i7hxp80c3hzxaqfixc3rn16cdnhhhjdaqz7k5zkgmgfbnb";} - {name="artikulate";value="1spb3qwf62agc76vnji7hgm1xsahb7i2fg818gmqwd9ndd4rf0fk";} - {name="audiocd-kio";value="0572hwlzn4l53d3xi2w20pgdf6wsyankr49q4522ckfjw9zh2p33";} {name="baloo";value="0p3awsrc20q79kq04x0vjz84acxz6gjm9jc7j2al4kybkyzx5p4y";} - {name="baloo-widgets";value="1lxwm8cb1f1dy91zr1d54alw0f67d30kixhr7hnbpqlanfw44sbv";} - {name="blinken";value="0zmfvj64xzgi9mmdx92csknm6nrgq57z458dmqr82glvdq6sy53w";} - {name="bomber";value="09bwp2fnyhi2jq6j36ssvcd02gxihd162b14hj4h76p50q9142ly";} - {name="bovo";value="0pflfpnxni01nfmljrb356bvb9sq7xg1yx7ylli8ws591s1wjv2f";} - {name="cantor";value="1qb58pnrpn23qr94j1nrdyj87yxc6gr9drra76mq583acra19j4g";} - {name="cervisia";value="1dgg0m8l2vb1ypkzq2lvp8d5faxn005z9fylf4pg6yczgj51y2m0";} - {name="dolphin-plugins";value="1vb5q9xwxplwxwfs57fqy1bi2hsq96cy1z705lbyiy1pq1g0xw5p";} - {name="dragon";value="195hv0l3w6n32qghdbqj3jzl4833lkbw90q53rnay56ia3azd7nk";} - {name="ffmpegthumbs";value="1waj02snh48qk8h021p1agy9pifpb7k7848ni9cyr1q76xmqbw3r";} - {name="filelight";value="16pp16zdvm8l6aaywj0cvvmpc1fgwr1ik1nf9s3vnj6pnqw91mc1";} - {name="granatier";value="08fs7nvhgg33cr54v2ib5p64lc9kmzshl12swsa88sp1fzakpdlj";} - {name="gwenview";value="1817nhd3qwghimbh4v57nxpbk9y2z9gh33i9s7rr190fqa5x2ci0";} - {name="jovie";value="06cvnycbab5w1vgws6fyfbpdnps63mvss2gnsv6ig1gm18pq8kh4";} - {name="juk";value="02dv0v34dbac9wpfj0p1kh438b380025qg0mpnhdisw9ng4igx83";} - {name="kaccessible";value="0blkyalm45c1q670wp9jn6mmqq4igw16hlsa39bv1dj82m5f0bkb";} - {name="kajongg";value="1f4fv1s1x2bg9ghf317br0kl6lgj9nacmck6fv1g3r14j60z5sfn";} - {name="kalgebra";value="0zgnppmnm2g0anq4yldlyd4bncjabr72b66h4s9ns6wd7kk9z6rs";} - {name="kalzium";value="1r8phdshq9whcglb7nyjcg8qjqnqya8rj1rm91mwax18jin0i3ab";} - {name="kamera";value="09n11d1hvl6xxfsp9j72q6ja103vda54gmrl7lqscnp5nvlfl2vg";} - {name="kanagram";value="0ns95365rdzx4v7akrsnbz1vgyl10d5h4jnavg1x08yrq7sm3rcm";} - 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{name="libkdeedu";value="4.14.3";} - {name="libkdegames";value="4.14.3";} {name="libkexiv2";value="4.14.3";} - {name="libkipi";value="4.14.3";} - {name="libkmahjongg";value="4.14.3";} - {name="libkomparediff2";value="4.14.3";} - {name="libksane";value="4.14.3";} - {name="lokalize";value="4.14.3";} - {name="lskat";value="4.14.3";} {name="marble";value="4.14.3";} - {name="mplayerthumbs";value="4.14.3";} - {name="nepomuk-core";value="4.14.3";} - {name="nepomuk-widgets";value="4.14.3";} - {name="okteta";value="4.14.3";} {name="okular";value="4.14.3";} - {name="oxygen-icons";value="4.14.3";} - {name="pairs";value="4.14.3";} - {name="palapeli";value="4.14.3";} - {name="parley";value="4.14.3";} - {name="perlkde";value="4.14.3";} - {name="perlqt";value="4.14.3";} - {name="picmi";value="4.14.3";} - {name="poxml";value="4.14.3";} - {name="print-manager";value="4.14.3";} {name="pykde4";value="4.14.3";} - {name="qtruby";value="4.14.3";} - {name="qyoto";value="4.14.3";} - {name="rocs";value="4.14.3";} - {name="smokegen";value="4.14.3";} - {name="smokekde";value="4.14.3";} - {name="smokeqt";value="4.14.3";} - {name="step";value="4.14.3";} - {name="superkaramba";value="4.14.3";} {name="svgpart";value="4.14.3";} - {name="sweeper";value="4.14.3";} - {name="umbrello";value="4.14.3";} - {name="zeroconf-ioslave";value="4.14.3";} ]; modules=[ { module="kdemultimedia"; split=true; pkgs=[ - { name="audiocd-kio"; sane="audiocd_kio"; } - { name="dragon"; } - { name="ffmpegthumbs"; } - { name="juk"; } - { name="kmix"; } - { name="kscd"; } { name="libkcddb"; } - { name="libkcompactdisc"; } - { name="mplayerthumbs"; } ]; } { module="kdegraphics"; split=true; pkgs=[ - { name="gwenview"; } - { name="kamera"; } - { name="kcolorchooser"; } - { name="kdegraphics-mobipocket"; sane="kdegraphics_mobipocket"; } - { name="kdegraphics-strigi-analyzer"; sane="kdegraphics_strigi_analyzer"; } - { name="kdegraphics-thumbnailers"; sane="kdegraphics_thumbnailers"; } - { name="kgamma"; } - { name="kolourpaint"; } - { name="kruler"; } - { name="ksaneplugin"; } - { name="ksnapshot"; } { name="libkdcraw"; } { name="libkexiv2"; } - { name="libkipi"; } - { name="libksane"; } { name="okular"; } { name="svgpart"; } ]; @@ -383,196 +51,22 @@ modules=[ module="kdelibs"; split=true; pkgs=[ - { name="baloo"; } - { name="baloo-widgets"; sane="baloo_widgets"; } - { name="kfilemetadata"; } - { name="nepomuk-core"; sane="nepomuk_core"; } - { name="nepomuk-widgets"; sane="nepomuk_widgets"; } - ]; -} -{ - module="kdenetwork"; - split=true; - pkgs=[ - { name="kdenetwork-filesharing"; sane="kdenetwork_filesharing"; } - { name="kdenetwork-strigi-analyzers"; sane="kdenetwork_strigi_analyzers"; } - { name="kget"; } - { name="kopete"; } - { name="kppp"; } - { name="krdc"; } - { name="krfb"; } - { name="zeroconf-ioslave"; sane="zeroconf_ioslave"; } - ]; -} -{ - module="kdeutils"; - split=true; - pkgs=[ - { name="ark"; } - { name="filelight"; } - { name="kcalc"; } - { name="kcharselect"; } - { name="kdf"; } - { name="kfloppy"; } - { name="kgpg"; } - { name="kremotecontrol"; } - { name="ktimer"; } - { name="kwalletmanager"; } - { name="print-manager"; sane="print_manager"; } - { name="superkaramba"; } - { name="sweeper"; } - ]; -} -{ - module="applications"; - split=true; - pkgs=[ - { name="kate"; } - { name="konsole"; } - ]; -} -{ - module="kdetoys"; - split=true; - pkgs=[ - { name="amor"; } - { name="kteatime"; } - { name="ktux"; } - ]; -} -{ - module="kdesdk"; - split=true; - pkgs=[ - { name="cervisia"; } - { name="dolphin-plugins"; sane="dolphin_plugins"; } - { name="kapptemplate"; } - { name="kcachegrind"; } - { name="kde-dev-scripts"; sane="kde_dev_scripts"; } - { name="kde-dev-utils"; sane="kde_dev_utils"; } - { name="kdesdk-kioslaves"; sane="kdesdk_kioslaves"; } - { name="kdesdk-strigi-analyzers"; sane="kdesdk_strigi_analyzers"; } - { name="kdesdk-thumbnailers"; sane="kdesdk_thumbnailers"; } - { name="kompare"; } - { name="libkomparediff2"; } - { name="lokalize"; } - { name="okteta"; } - { name="poxml"; } - { name="umbrello"; } - ]; -} -{ - module="kdegames"; - split=true; - pkgs=[ - { name="bomber"; } - { name="bovo"; } - { name="granatier"; } - { name="kajongg"; } - { name="kapman"; } - { name="katomic"; } - { name="kblackbox"; } - { name="kblocks"; } - { name="kbounce"; } - { name="kbreakout"; } - { name="kdiamond"; } - { name="kfourinline"; } - { name="kgoldrunner"; } - { name="kigo"; } - { name="killbots"; } - { name="kiriki"; } - { name="kjumpingcube"; } - { name="klickety"; } - { name="klines"; } - { name="kmahjongg"; } - { name="kmines"; } - { name="knavalbattle"; } - { name="knetwalk"; } - { name="kolf"; } - { name="kollision"; } - { name="konquest"; } - { name="kpat"; } - { name="kreversi"; } - { name="kshisen"; } - { name="ksirk"; } - { name="ksnakeduel"; } - { name="kspaceduel"; } - { name="ksquares"; } - { name="ksudoku"; } - { name="ktuberling"; } - { name="kubrick"; } - { name="libkdegames"; } - { name="libkmahjongg"; } - { name="lskat"; } - { name="palapeli"; } - { name="picmi"; } + { name = "baloo"; } + { name = "kfilemetadata"; } ]; } { module="kdeedu"; split=true; pkgs=[ - { name="analitza"; } - { name="artikulate"; } - { name="blinken"; } - { name="cantor"; } - { name="kalgebra"; } - { name="kalzium"; } - { name="kanagram"; } - { name="kbruch"; } - { name="kgeography"; } - { name="khangman"; } - { name="kig"; } - { name="kiten"; } - { name="klettres"; } - { name="kmplot"; } - { name="kqtquickcharts"; } - { name="ktouch"; } - { name="kturtle"; } - { name="kwordquiz"; } - { name="libkdeedu"; } { name="marble"; } - { name="pairs"; } - { name="parley"; } - { name="rocs"; } - { name="step"; } - ]; -} -{ - module="kdeadmin"; - split=true; - pkgs=[ - { name="kcron"; } - { name="ksystemlog"; } - { name="kuser"; } ]; } { module="kdebindings"; split=true; pkgs=[ - { name="kimono"; } - { name="korundum"; } - { name="kross-interpreters"; sane="kross_interpreters"; } - { name="perlkde"; } - { name="perlqt"; } { name="pykde4"; } - { name="qtruby"; } - { name="qyoto"; } - { name="smokegen"; } - { name="smokekde"; } - { name="smokeqt"; } - ]; -} -{ - module="kdeaccessibility"; - split=true; - pkgs=[ - { name="jovie"; } - { name="kaccessible"; } - { name="kmag"; } - { name="kmousetool"; } - { name="kmouth"; } ]; } { @@ -583,38 +77,7 @@ sane="kde_baseapps"; split=true; ]; } { module="kactivities"; split=false;} -{ module="kdeartwork"; split=false; - pkgs=[ - { name="ColorSchemes"; } - { name="IconThemes"; } - { name="emoticons"; } - { name="kscreensaver"; } - { name="kwin-styles"; sane="kwin_styles";} - { name="styles"; } - { name="wallpapers"; } - { name="HighResolutionWallpapers"; } - { name="WeatherWallpapers"; } - { name="desktopthemes"; } - ]; - -} -{ module="kde-base-artwork"; sane="kde_base_artwork"; split=false;} -{ module="kdepim"; split=false;} { module="kdepimlibs"; split=false;} -{ module="kdepim-runtime"; sane="kdepim_runtime"; split=false;} -{ module="kdeplasma-addons"; sane="kdeplasma_addons"; split=false;} -{ module="kde-runtime"; sane="kde_runtime"; split=false;} -{ module="kde-wallpapers"; sane="kde_wallpapers"; split=false;} -{ module="kdewebdev"; split=false; - pkgs=[ - { name="klinkstatus"; } - { name="kfilereplace"; } - { name="kimagemapeditor"; } - { name="kommander"; } - ]; - -} { module="kde-workspace"; sane="kde_workspace"; split=false;} -{ module="oxygen-icons"; sane="oxygen_icons"; split=false;} ]; } diff --git a/pkgs/desktops/kde-4.14/kde-package/default.nix b/pkgs/desktops/kde-4.14/kde-package/default.nix index 4bb961b8d2e7..d5de6f5f6bc1 100644 --- a/pkgs/desktops/kde-4.14/kde-package/default.nix +++ b/pkgs/desktops/kde-4.14/kde-package/default.nix @@ -113,14 +113,18 @@ rec { removeNames = subst: big: fold (s: out: filter (x: x.name != s) out) big subst; - modules = listToAttrs (map kdeModuleNV manifest.modules); + allModules = listToAttrs (map kdeModuleNV manifest.modules); + + modules = + let unsplit = filter (a: ! (a ? pkgs)) manifest.modules; + in listToAttrs (map kdeModuleNV unsplit); splittedModuleList = let splitted = filter (a: a ? pkgs) manifest.modules; names = map ({module, sane ? module, ...}: sane) splitted; in - map (m: m.projects) (stdenv.lib.attrVals names modules); + map (m: m.projects) (stdenv.lib.attrVals names allModules); individual = stdenv.lib.zipAttrsWith diff --git a/pkgs/desktops/kde-4.14/kde-runtime.nix b/pkgs/desktops/kde-4.14/kde-runtime.nix deleted file mode 100644 index a66d189a6007..000000000000 --- a/pkgs/desktops/kde-4.14/kde-runtime.nix +++ /dev/null @@ -1,24 +0,0 @@ -{ kde, kdelibs, bzip2, libssh, exiv2, attica, qca2, shared_mime_info -, libcanberra, samba, libjpeg, ntrack, pkgconfig, xz, libpulseaudio -, networkmanager, kactivities, kdepimlibs, openexr, ilmbase, gpgme, glib -}: - -kde { - patches = [ ./CVE-2014-8600.diff ]; - - buildInputs = [ - kdelibs attica xz bzip2 libssh libjpeg exiv2 ntrack - qca2 samba libcanberra libpulseaudio gpgme - networkmanager kactivities kdepimlibs openexr -#todo: add openslp -#todo: gpgme can't be found because cmake module is provided by kdepimlibs which are found too late - ]; - - nativeBuildInputs = [ shared_mime_info ]; - - NIX_CFLAGS_COMPILE = "-I${ilmbase.dev}/include/OpenEXR -I${glib.dev}/include/glib-2.0 -I${glib.out}/lib/glib-2.0/include"; - - meta = { - license = "LGPL"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kde-wallpapers.nix b/pkgs/desktops/kde-4.14/kde-wallpapers.nix deleted file mode 100644 index 875eb6769c0e..000000000000 --- a/pkgs/desktops/kde-4.14/kde-wallpapers.nix +++ /dev/null @@ -1,17 +0,0 @@ -{ kde, cmake }: - -kde { - nativeBuildInputs = [ cmake ]; - - patches = [ ./files/kde-wallpapers-buildsystem.patch ]; - - cmakeFlags = "-DWALLPAPER_INSTALL_DIR=share/wallpapers"; - - outputHashAlgo = "sha256"; - outputHashMode = "recursive"; - outputHash = "1mzj7jk0ag7yas2wm2x60z3ymv64g9jrjsz3nwlr719b4bhmgwjj"; - - meta = { - description = "Wallpapers for KDE"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeaccessibility/jovie.nix b/pkgs/desktops/kde-4.14/kdeaccessibility/jovie.nix deleted file mode 100644 index d38c80c4c36a..000000000000 --- a/pkgs/desktops/kde-4.14/kdeaccessibility/jovie.nix +++ /dev/null @@ -1,9 +0,0 @@ -{ kde, kdelibs, speechd }: - -kde { - buildInputs = [ kdelibs speechd ]; - - meta = { - description = "Text-to-speech synthesis daemon"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeaccessibility/kaccessible.nix b/pkgs/desktops/kde-4.14/kdeaccessibility/kaccessible.nix deleted file mode 100644 index 98fae7c983f8..000000000000 --- a/pkgs/desktops/kde-4.14/kdeaccessibility/kaccessible.nix +++ /dev/null @@ -1,9 +0,0 @@ -{ kde, kdelibs, speechd }: - -kde { - buildInputs = [ kdelibs speechd ]; - - meta = { - description = "Bridge that provides accessibility services to applications"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeaccessibility/kmag.nix b/pkgs/desktops/kde-4.14/kdeaccessibility/kmag.nix deleted file mode 100644 index 606c61cddb63..000000000000 --- a/pkgs/desktops/kde-4.14/kdeaccessibility/kmag.nix +++ /dev/null @@ -1,10 +0,0 @@ -{ kde, kdelibs }: - -kde { -#todo: package qaccessibilityclient - buildInputs = [ kdelibs ]; - - meta = { - description = "Screen magnifier for KDE"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeaccessibility/kmousetool.nix b/pkgs/desktops/kde-4.14/kdeaccessibility/kmousetool.nix deleted file mode 100644 index 8e0caa76ed9c..000000000000 --- a/pkgs/desktops/kde-4.14/kdeaccessibility/kmousetool.nix +++ /dev/null @@ -1,9 +0,0 @@ -{ kde, kdelibs, libXtst, libXt }: - -kde { - buildInputs = [ kdelibs libXtst libXt ]; - - meta = { - description = "A program that clicks the mouse for you"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeaccessibility/kmouth.nix b/pkgs/desktops/kde-4.14/kdeaccessibility/kmouth.nix deleted file mode 100644 index 4159501967cd..000000000000 --- a/pkgs/desktops/kde-4.14/kdeaccessibility/kmouth.nix +++ /dev/null @@ -1,9 +0,0 @@ -{ kde, kdelibs }: - -kde { - buildInputs = [ kdelibs ]; - - meta = { - description = "A type-and-say front end for speech synthesizers"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeadmin/kcron.nix b/pkgs/desktops/kde-4.14/kdeadmin/kcron.nix deleted file mode 100644 index f585461af381..000000000000 --- a/pkgs/desktops/kde-4.14/kdeadmin/kcron.nix +++ /dev/null @@ -1,9 +0,0 @@ -{ kde, kdelibs }: - -kde { - buildInputs = [ kdelibs ]; - - meta = { - description = "Configure and schedule tasks"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeadmin/ksystemlog.nix b/pkgs/desktops/kde-4.14/kdeadmin/ksystemlog.nix deleted file mode 100644 index 88757a6b91c7..000000000000 --- a/pkgs/desktops/kde-4.14/kdeadmin/ksystemlog.nix +++ /dev/null @@ -1,9 +0,0 @@ -{ kde, kdelibs }: - -kde { - buildInputs = [ kdelibs ]; - - meta = { - description = "System log viewer tool"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeadmin/kuser.nix b/pkgs/desktops/kde-4.14/kdeadmin/kuser.nix deleted file mode 100644 index 6118cf558bbd..000000000000 --- a/pkgs/desktops/kde-4.14/kdeadmin/kuser.nix +++ /dev/null @@ -1,9 +0,0 @@ -{ kde, kdelibs, kdepimlibs }: - -kde { - buildInputs = [ kdelibs kdepimlibs ]; - - meta = { - description = "User management tool"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeartwork/ColorSchemes.nix b/pkgs/desktops/kde-4.14/kdeartwork/ColorSchemes.nix deleted file mode 100644 index acccf66976fc..000000000000 --- a/pkgs/desktops/kde-4.14/kdeartwork/ColorSchemes.nix +++ /dev/null @@ -1,11 +0,0 @@ -{ kde, kdelibs }: - -kde { - name = "kde-color-schemes"; - - buildInputs = [ kdelibs ]; - - meta = { - description = "Additional KDE color schemes"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeartwork/FindXscreensaver.cmake b/pkgs/desktops/kde-4.14/kdeartwork/FindXscreensaver.cmake deleted file mode 100644 index 499ed75268e9..000000000000 --- a/pkgs/desktops/kde-4.14/kdeartwork/FindXscreensaver.cmake +++ /dev/null @@ -1,73 +0,0 @@ -#Macro to find xscreensaver directory - -# Copyright (c) 2006, Laurent Montel, <montel@kde.org> -# -# Redistribution and use is allowed according to the terms of the BSD license. -# For details see the accompanying COPYING-CMAKE-SCRIPTS file. - -if (NOT XSCREENSAVER_FOUND) - FIND_PATH(XSCREENSAVER_DIR deco - HINTS - ${KDE4_INCLUDE_DIR} - PATHS - /usr - /usr/local - /opt/local - /usr/X11R6 - /opt/kde - /opt/kde3 - /usr/kde - /usr/local/kde - /usr/local/xscreensaver - /usr/openwin/lib/xscreensaver - /etc - PATH_SUFFIXES - lib${LIB_SUFFIX}/xscreensaver - lib${LIB_SUFFIX}/misc/xscreensaver - lib/xscreensaver - lib64/xscreensaver - lib/misc/xscreensaver - libexec/xscreensaver - bin/xscreensaver-hacks - hacks) - message(STATUS "XSCREENSAVER_DIR <${XSCREENSAVER_DIR}>") - - FIND_PATH(XSCREENSAVER_CONFIG_DIR deco.xml - PATHS - ${KDE4_INCLUDE_DIR} - /usr/ - /usr/local/ - /opt/local/ - /usr/X11R6/ - /opt/kde/ - /opt/kde3/ - /usr/kde/ - /usr/local/kde/ - /usr/openwin/lib/xscreensaver/ - /etc/ - PATH_SUFFIXES xscreensaver xscreensaver/config share/xscreensaver/config - ) - MESSAGE(STATUS "XSCREENSAVER_CONFIG_DIR :<${XSCREENSAVER_CONFIG_DIR}>") - -endif(NOT XSCREENSAVER_FOUND) - -#MESSAGE(STATUS "XSCREENSAVER_CONFIG_DIR :<${XSCREENSAVER_CONFIG_DIR}>") -#MESSAGE(STATUS "XSCREENSAVER_DIR :<${XSCREENSAVER_DIR}>") - -# Need to fix hack -if(XSCREENSAVER_DIR AND XSCREENSAVER_CONFIG_DIR) - set(XSCREENSAVER_FOUND TRUE) -endif(XSCREENSAVER_DIR AND XSCREENSAVER_CONFIG_DIR) - -if (XSCREENSAVER_FOUND) - if (NOT Xscreensaver_FIND_QUIETLY) - message(STATUS "Found XSCREENSAVER_CONFIG_DIR <${XSCREENSAVER_CONFIG_DIR}>") - endif (NOT Xscreensaver_FIND_QUIETLY) -else (XSCREENSAVER_FOUND) - if (Xscreensaver_FIND_REQUIRED) - message(FATAL_ERROR "XScreenSaver not found") - endif (Xscreensaver_FIND_REQUIRED) -endif (XSCREENSAVER_FOUND) - - -MARK_AS_ADVANCED(XSCREENSAVER_DIR XSCREENSAVER_CONFIG_DIR) diff --git a/pkgs/desktops/kde-4.14/kdeartwork/HighResolutionWallpapers.nix b/pkgs/desktops/kde-4.14/kdeartwork/HighResolutionWallpapers.nix deleted file mode 100644 index edffca1562e1..000000000000 --- a/pkgs/desktops/kde-4.14/kdeartwork/HighResolutionWallpapers.nix +++ /dev/null @@ -1,11 +0,0 @@ -{ kde, kdelibs }: - -kde rec { - name = "kde-wallpapers-high-resolution"; - - buildInputs = [ kdelibs ]; - - meta = { - description = "KDE wallpapers in high resolution"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeartwork/IconThemes.nix b/pkgs/desktops/kde-4.14/kdeartwork/IconThemes.nix deleted file mode 100644 index 43071e8bd142..000000000000 --- a/pkgs/desktops/kde-4.14/kdeartwork/IconThemes.nix +++ /dev/null @@ -1,13 +0,0 @@ -{ kde, kdelibs }: - -kde { - name = "kdeartwork-icon-themes"; - - # Sources contain primary and kdeclassic as well but they're not installed - - buildInputs = [ kdelibs ]; - - meta = { - description = "KDE nuvola and mono icon themes"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeartwork/WeatherWallpapers.nix b/pkgs/desktops/kde-4.14/kdeartwork/WeatherWallpapers.nix deleted file mode 100644 index 947e5e17ab0c..000000000000 --- a/pkgs/desktops/kde-4.14/kdeartwork/WeatherWallpapers.nix +++ /dev/null @@ -1,11 +0,0 @@ -{ kde, kdelibs }: - -kde rec { - name = "kde-weather-wallpapers"; - - buildInputs = [ kdelibs ]; - - meta = { - description = "Additional KDE wallpapers (weather)"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeartwork/desktopthemes.nix b/pkgs/desktops/kde-4.14/kdeartwork/desktopthemes.nix deleted file mode 100644 index 93dd361af738..000000000000 --- a/pkgs/desktops/kde-4.14/kdeartwork/desktopthemes.nix +++ /dev/null @@ -1,11 +0,0 @@ -{ kde, kdelibs }: - -kde { - name = "kde-desktop-themes"; - - buildInputs = [ kdelibs ]; - - meta = { - description = "Additional KDE desktop themes"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeartwork/emoticons.nix b/pkgs/desktops/kde-4.14/kdeartwork/emoticons.nix deleted file mode 100644 index 5ef9f78a7195..000000000000 --- a/pkgs/desktops/kde-4.14/kdeartwork/emoticons.nix +++ /dev/null @@ -1,11 +0,0 @@ -{ kde, kdelibs }: - -kde { - name = "kde-emotion-icons"; - - buildInputs = [ kdelibs ]; - - meta = { - description = "Additional KDE emotion icons (smiles)"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeartwork/kscreensaver.nix b/pkgs/desktops/kde-4.14/kdeartwork/kscreensaver.nix deleted file mode 100644 index 84cb008056e4..000000000000 --- a/pkgs/desktops/kde-4.14/kdeartwork/kscreensaver.nix +++ /dev/null @@ -1,15 +0,0 @@ -{ kde, kdelibs, xscreensaver, kde_workspace, eigen, libkexiv2, libXt, pkgconfig }: - -kde { - buildInputs = [ kdelibs xscreensaver kde_workspace eigen libkexiv2 libXt ]; - - nativeBuildInputs = [ pkgconfig ]; - - prePatch = "cp -v ${./FindXscreensaver.cmake} cmake/modules/FindXscreensaver.cmake"; - - cmakeFlags = [ "-DBUILD_asciiquarium:BOOL=ON" ]; - - meta = { - description = "KDE screensavers"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeartwork/kwin-styles.nix b/pkgs/desktops/kde-4.14/kdeartwork/kwin-styles.nix deleted file mode 100644 index b5d769b216db..000000000000 --- a/pkgs/desktops/kde-4.14/kdeartwork/kwin-styles.nix +++ /dev/null @@ -1,9 +0,0 @@ -{ kde, kdelibs, kde_workspace }: - -kde { - buildInputs = [ kdelibs kde_workspace ]; - - meta = { - description = "Styles for KWin"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeartwork/styles.nix b/pkgs/desktops/kde-4.14/kdeartwork/styles.nix deleted file mode 100644 index 6a1306c37100..000000000000 --- a/pkgs/desktops/kde-4.14/kdeartwork/styles.nix +++ /dev/null @@ -1,11 +0,0 @@ -{ kde, kdelibs }: - -kde rec { - name = "kde-style-phase"; - - buildInputs = [ kdelibs ]; - - meta = { - description = "Phase, a widget style for KDE"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeartwork/wallpapers.nix b/pkgs/desktops/kde-4.14/kdeartwork/wallpapers.nix deleted file mode 100644 index 7c9846fbf9e8..000000000000 --- a/pkgs/desktops/kde-4.14/kdeartwork/wallpapers.nix +++ /dev/null @@ -1,11 +0,0 @@ -{ kde, kdelibs }: - -kde rec { - name = "kdeartwork-wallpapers"; - - buildInputs = [ kdelibs ]; - - meta = { - description = "Additional KDE wallpapers"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdebindings/perlqt.nix b/pkgs/desktops/kde-4.14/kdebindings/perlqt.nix deleted file mode 100644 index 48eed141ce64..000000000000 --- a/pkgs/desktops/kde-4.14/kdebindings/perlqt.nix +++ /dev/null @@ -1,14 +0,0 @@ -{ kde, cmake, smokeqt, perl }: - -kde { - - # TODO: qscintilla2, qwt5 - - buildInputs = [ smokeqt perl ]; - - nativeBuildInputs = [ cmake ]; - - meta = { - description = "Perl bindings for Qt library"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdebindings/qtruby-install-prefix.patch b/pkgs/desktops/kde-4.14/kdebindings/qtruby-install-prefix.patch deleted file mode 100644 index bd95a0d8bd3d..000000000000 --- a/pkgs/desktops/kde-4.14/kdebindings/qtruby-install-prefix.patch +++ /dev/null @@ -1,15 +0,0 @@ -diff --git a/CMakeLists.txt b/CMakeLists.txt -index 33078b4..30aec0e 100644 ---- a/CMakeLists.txt -+++ b/CMakeLists.txt -@@ -31,8 +31,8 @@ if (NOT COMPILE_RUBY) - return() - endif (NOT COMPILE_RUBY) - --SET(CUSTOM_RUBY_SITE_ARCH_DIR ${RUBY_SITEARCH_DIR} CACHE DIR "custom installation directory for ruby binary extension" ) --SET(CUSTOM_RUBY_SITE_LIB_DIR ${RUBY_SITELIB_DIR} CACHE DIR "custom installation directory for ruby extension" ) -+string(REPLACE "${RUBY_ROOT_DIR}" "${CMAKE_INSTALL_PREFIX}" CUSTOM_RUBY_SITE_ARCH_DIR ${RUBY_SITEARCH_DIR}) -+string(REPLACE "${RUBY_ROOT_DIR}" "${CMAKE_INSTALL_PREFIX}" CUSTOM_RUBY_SITE_LIB_DIR ${RUBY_SITELIB_DIR}) - - # compute an overall version number which can be compared at once - MATH(EXPR RUBY_VERSION_NUMBER "${RUBY_VERSION_MAJOR}*10000 + ${RUBY_VERSION_MINOR}*100 + ${RUBY_VERSION_PATCH}") diff --git a/pkgs/desktops/kde-4.14/kdebindings/qtruby.nix b/pkgs/desktops/kde-4.14/kdebindings/qtruby.nix deleted file mode 100644 index ed83dd03eca1..000000000000 --- a/pkgs/desktops/kde-4.14/kdebindings/qtruby.nix +++ /dev/null @@ -1,22 +0,0 @@ -{ kde, cmake, smokeqt, ruby_2_2 }: - -kde { - - # TODO: scintilla2, qwt5 - - buildInputs = [ smokeqt ruby_2_2 ]; - - nativeBuildInputs = [ cmake ]; - - hardeningDisable = [ "all" ]; - - # The patch is not ready for upstream submmission. - # I should add an option() instead. - patches = [ ./qtruby-install-prefix.patch ]; - - cmakeFlags="-DRUBY_ROOT_DIR=${ruby_2_2}"; - - meta = { - description = "Ruby bindings for Qt library"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdebindings/smokegen-CMakeLists.txt-nix.patch b/pkgs/desktops/kde-4.14/kdebindings/smokegen-CMakeLists.txt-nix.patch deleted file mode 100644 index 7436b6112d57..000000000000 --- a/pkgs/desktops/kde-4.14/kdebindings/smokegen-CMakeLists.txt-nix.patch +++ /dev/null @@ -1,16 +0,0 @@ -diff -Naur smokegen-4.14.3-upstream/CMakeLists.txt smokegen-4.14.3/CMakeLists.txt ---- smokegen-4.14.3-upstream/CMakeLists.txt 2014-09-15 13:23:01.000000000 -0430 -+++ smokegen-4.14.3/CMakeLists.txt 2015-03-29 16:41:59.295598992 -0430 -@@ -32,9 +32,9 @@ - type.cpp - ) - --# force RPATH so that the binary is usable from within the build tree --set (CMAKE_SKIP_BUILD_RPATH FALSE) --set (CMAKE_SKIP_RPATH FALSE) -+# add the automatically determined parts of the RPATH -+# which point to directories outside the build tree to the install RPATH -+set (CMAKE_INSTALL_RPATH_USE_LINK_PATH TRUE) - - configure_file( ${CMAKE_CURRENT_SOURCE_DIR}/config.h.in config.h @ONLY ) - diff --git a/pkgs/desktops/kde-4.14/kdebindings/smokegen-nix.patch b/pkgs/desktops/kde-4.14/kdebindings/smokegen-nix.patch deleted file mode 100644 index 53257e836e04..000000000000 --- a/pkgs/desktops/kde-4.14/kdebindings/smokegen-nix.patch +++ /dev/null @@ -1,13 +0,0 @@ -diff -urN smokegen-4.10.5.orig/cmake/SmokeConfig.cmake.in smokegen-4.10.5/cmake/SmokeConfig.cmake.in ---- smokegen-4.10.5.orig/cmake/SmokeConfig.cmake.in 2013-06-28 17:14:50.000000000 +0000 -+++ smokegen-4.10.5/cmake/SmokeConfig.cmake.in 2013-07-30 21:26:33.000000000 +0000 -@@ -80,8 +80,7 @@ - set(SMOKE_API_BIN "@SMOKE_API_BIN@") - - find_library(SMOKE_BASE_LIBRARY smokebase -- PATHS "@SMOKE_LIBRARY_PREFIX@" -- NO_DEFAULT_PATH) -+ PATHS "@SMOKE_LIBRARY_PREFIX@") - - if (NOT SMOKE_BASE_LIBRARY) - if (Smoke_FIND_REQUIRED) diff --git a/pkgs/desktops/kde-4.14/kdebindings/smokegen.nix b/pkgs/desktops/kde-4.14/kdebindings/smokegen.nix deleted file mode 100644 index 5708d0f96eb2..000000000000 --- a/pkgs/desktops/kde-4.14/kdebindings/smokegen.nix +++ /dev/null @@ -1,13 +0,0 @@ -{ stdenv, kde, qt4, cmake }: - -kde { - buildInputs = [ qt4 ]; - nativeBuildInputs = [ cmake ]; - - patches = [ ./smokegen-nix.patch ./smokegen-CMakeLists.txt-nix.patch ]; - - meta = { - description = "C++ parser used to generate language bindings for Qt/KDE"; - license = stdenv.lib.licenses.gpl2; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdebindings/smokekde.nix b/pkgs/desktops/kde-4.14/kdebindings/smokekde.nix deleted file mode 100644 index 4474c1d9731e..000000000000 --- a/pkgs/desktops/kde-4.14/kdebindings/smokekde.nix +++ /dev/null @@ -1,19 +0,0 @@ -{ kde, cmake, smokeqt, kdelibs, akonadi, kdepimlibs, okular -, shared_desktop_ontologies, attica, pkgconfig }: - -kde { - - # TODO: attica, akonadi and kdepimlibs are disabled due to smokegen crash - # okular is disabled because the code generated is broken - buildInputs = [ - smokeqt kdelibs shared_desktop_ontologies - ]; - - nativeBuildInputs = [ cmake pkgconfig ]; - - LD_LIBRARY_PATH = "${smokeqt}/lib/"; - - meta = { - description = "SMOKE bindings for kdelibs"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdebindings/smokeqt.nix b/pkgs/desktops/kde-4.14/kdebindings/smokeqt.nix deleted file mode 100644 index 494bc85e6465..000000000000 --- a/pkgs/desktops/kde-4.14/kdebindings/smokeqt.nix +++ /dev/null @@ -1,15 +0,0 @@ -{ stdenv, kde, qt4, cmake, phonon, qimageblitz, smokegen }: - -kde { - -# TODO: Qwt5, QScintilla2 - - propagatedBuildInputs = [ qt4 phonon qimageblitz ]; - nativeBuildInputs = [ cmake ]; - propagatedNativeBuildInputs = [ smokegen ]; - - meta = { - description = "C++ parser used to generate language bindings for Qt/KDE"; - license = stdenv.lib.licenses.gpl2; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeedu/analitza.nix b/pkgs/desktops/kde-4.14/kdeedu/analitza.nix deleted file mode 100644 index 74c3a1ebb200..000000000000 --- a/pkgs/desktops/kde-4.14/kdeedu/analitza.nix +++ /dev/null @@ -1,8 +0,0 @@ -{ kde, kdelibs, readline }: -kde { - buildInputs = [ kdelibs readline ]; - - meta = { - description = "Library part of KAlgebra"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeedu/artikulate.nix b/pkgs/desktops/kde-4.14/kdeedu/artikulate.nix deleted file mode 100644 index 8674a774443f..000000000000 --- a/pkgs/desktops/kde-4.14/kdeedu/artikulate.nix +++ /dev/null @@ -1,8 +0,0 @@ -{ kde, kdelibs, qt_gstreamer1 }: -kde { - buildInputs = [ kdelibs qt_gstreamer1 ]; - - meta = { - description = "A pronunciation learning program for KDE"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeedu/blinken.nix b/pkgs/desktops/kde-4.14/kdeedu/blinken.nix deleted file mode 100644 index cdf9728833c2..000000000000 --- a/pkgs/desktops/kde-4.14/kdeedu/blinken.nix +++ /dev/null @@ -1,8 +0,0 @@ -{ kde, kdelibs }: -kde { - buildInputs = [ kdelibs ]; - - meta = { - description = "Memory Enhancement Game"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeedu/cantor.nix b/pkgs/desktops/kde-4.14/kdeedu/cantor.nix deleted file mode 100644 index 625a2678e48b..000000000000 --- a/pkgs/desktops/kde-4.14/kdeedu/cantor.nix +++ /dev/null @@ -1,15 +0,0 @@ -{ kde, kdelibs, libspectre, analitza, R, pkgconfig, libqalculate, python }: -kde { - -# TODO: R is not found - - buildInputs = [ kdelibs libspectre analitza R libqalculate python ]; - - nativeBuildInputs = [ pkgconfig ]; - - patches = [ ./commit-846cf02 ]; - - meta = { - description = "KDE Frontend to Mathematical Software"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeedu/commit-846cf02 b/pkgs/desktops/kde-4.14/kdeedu/commit-846cf02 deleted file mode 100644 index 66e756e21bb8..000000000000 --- a/pkgs/desktops/kde-4.14/kdeedu/commit-846cf02 +++ /dev/null @@ -1,42 +0,0 @@ -diff --git a/src/backends/R/rserver/rcallbacks.h b/src/backends/R/rserver/rcallbacks.h -index 8f4752c..6d0e9a2 100644 ---- a/src/backends/R/rserver/rcallbacks.h -+++ b/src/backends/R/rserver/rcallbacks.h -@@ -30,7 +30,6 @@ class Expression; - #include <Rversion.h> - #include <Rdefines.h> - #define R_INTERFACE_PTRS --#include <Rinterface.h> - #include <R_ext/Parse.h> - - //This File implements the necessary callbacks for R -commit 846cf02ab1618b9322b83eafc18dff3264988b72 -Author: Raymond Wooninck <tittiatcoke@gmail.com> -Date: Mon Apr 27 16:08:51 2015 +0200 - - Also build against R >= 3.2. - -diff --git a/src/backends/R/rserver/rcallbacks.cpp b/src/backends/R/rserver/rcallbacks.cpp -index 2c86531..492f270 100644 ---- a/src/backends/R/rserver/rcallbacks.cpp -+++ b/src/backends/R/rserver/rcallbacks.cpp -@@ -26,6 +26,7 @@ - #include <QStringList> - - #include <stdio.h> -+#include <Rinterface.h> - - RServer* server; - Expression* currentExpression; -diff --git a/src/backends/R/rserver/rserver.cpp b/src/backends/R/rserver/rserver.cpp -index 30cdb70..f689f42 100644 ---- a/src/backends/R/rserver/rserver.cpp -+++ b/src/backends/R/rserver/rserver.cpp -@@ -42,7 +42,6 @@ - #include <Rversion.h> - #include <Rdefines.h> - #define R_INTERFACE_PTRS --#include <Rinterface.h> - #include <R_ext/Parse.h> - - // Not making a member to prevent pulling R headers into rserver.h diff --git a/pkgs/desktops/kde-4.14/kdeedu/kalgebra.nix b/pkgs/desktops/kde-4.14/kdeedu/kalgebra.nix deleted file mode 100644 index 3675c3a225f4..000000000000 --- a/pkgs/desktops/kde-4.14/kdeedu/kalgebra.nix +++ /dev/null @@ -1,8 +0,0 @@ -{ kde, kdelibs, libkdeedu, analitza }: -kde { - buildInputs = [ kdelibs libkdeedu analitza ]; - - meta = { - description = "2D and 3D Graph Calculator"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeedu/kalzium.nix b/pkgs/desktops/kde-4.14/kdeedu/kalzium.nix deleted file mode 100644 index 8338eee55110..000000000000 --- a/pkgs/desktops/kde-4.14/kdeedu/kalzium.nix +++ /dev/null @@ -1,13 +0,0 @@ -{ kde, kdelibs, facile, ocaml, eigen2, eigen, openbabel, avogadro, pkgconfig }: -kde { - -# TODO: chemical mime data - - buildInputs = [ kdelibs facile ocaml eigen2 eigen openbabel avogadro ]; - - nativeBuildInputs = [ pkgconfig ]; - - meta = { - description = "Periodic Table of Elements"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeedu/kanagram.nix b/pkgs/desktops/kde-4.14/kdeedu/kanagram.nix deleted file mode 100644 index 8759c96d78c4..000000000000 --- a/pkgs/desktops/kde-4.14/kdeedu/kanagram.nix +++ /dev/null @@ -1,8 +0,0 @@ -{ kde, kdelibs, libkdeedu }: -kde { - buildInputs = [ kdelibs libkdeedu ]; - - meta = { - description = "Letter Order Game"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeedu/kbruch.nix b/pkgs/desktops/kde-4.14/kdeedu/kbruch.nix deleted file mode 100644 index dc50f1e85a37..000000000000 --- a/pkgs/desktops/kde-4.14/kdeedu/kbruch.nix +++ /dev/null @@ -1,8 +0,0 @@ -{ kde, kdelibs }: -kde { - buildInputs = [ kdelibs ]; - - meta = { - description = "Practice Fractions"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeedu/kgeography.nix b/pkgs/desktops/kde-4.14/kdeedu/kgeography.nix deleted file mode 100644 index bd8d27c8d6e2..000000000000 --- a/pkgs/desktops/kde-4.14/kdeedu/kgeography.nix +++ /dev/null @@ -1,8 +0,0 @@ -{ kde, kdelibs }: -kde { - buildInputs = [ kdelibs ]; - - meta = { - description = "Geography Trainer"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeedu/khangman.nix b/pkgs/desktops/kde-4.14/kdeedu/khangman.nix deleted file mode 100644 index 997b50e906a2..000000000000 --- a/pkgs/desktops/kde-4.14/kdeedu/khangman.nix +++ /dev/null @@ -1,8 +0,0 @@ -{ kde, kdelibs, libkdeedu }: -kde { - buildInputs = [ kdelibs libkdeedu ]; - - meta = { - description = "KDE hangman game"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeedu/kig.nix b/pkgs/desktops/kde-4.14/kdeedu/kig.nix deleted file mode 100644 index 37906c32bcb2..000000000000 --- a/pkgs/desktops/kde-4.14/kdeedu/kig.nix +++ /dev/null @@ -1,9 +0,0 @@ -{ kde, kdelibs, boost, python}: -kde { - buildInputs = [ kdelibs boost python ]; - - cmakeFlags = "-DKIG_ENABLE_PYTHON_SCRIPTING=1"; - meta = { - description = "KDE Interactive Geometry"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeedu/kiten.nix b/pkgs/desktops/kde-4.14/kdeedu/kiten.nix deleted file mode 100644 index 939b7a9f77a2..000000000000 --- a/pkgs/desktops/kde-4.14/kdeedu/kiten.nix +++ /dev/null @@ -1,9 +0,0 @@ -{ kde, kdelibs }: - -kde { - buildInputs = [ kdelibs ]; - - meta = { - description = "Japanese Reference/Study Tool"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeedu/klettres.nix b/pkgs/desktops/kde-4.14/kdeedu/klettres.nix deleted file mode 100644 index 7a0fa83078e3..000000000000 --- a/pkgs/desktops/kde-4.14/kdeedu/klettres.nix +++ /dev/null @@ -1,9 +0,0 @@ -{ kde, kdelibs }: - -kde { - buildInputs = [ kdelibs ]; - - meta = { - description = "A KDE alphabet tutorial"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeedu/kmplot.nix b/pkgs/desktops/kde-4.14/kdeedu/kmplot.nix deleted file mode 100644 index fc7b0578c27b..000000000000 --- a/pkgs/desktops/kde-4.14/kdeedu/kmplot.nix +++ /dev/null @@ -1,9 +0,0 @@ -{ kde, kdelibs }: - -kde { - buildInputs = [ kdelibs ]; - - meta = { - description = "A KDE mathematical function plotter"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeedu/kqtquickcharts.nix b/pkgs/desktops/kde-4.14/kdeedu/kqtquickcharts.nix deleted file mode 100644 index 3e243b8c4032..000000000000 --- a/pkgs/desktops/kde-4.14/kdeedu/kqtquickcharts.nix +++ /dev/null @@ -1,8 +0,0 @@ -{ kde, kdelibs }: -kde { - buildInputs = [ kdelibs ]; - - meta = { - description = "Qt Quick 1 plugin for beautiful and interactive charts"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeedu/ktouch.nix b/pkgs/desktops/kde-4.14/kdeedu/ktouch.nix deleted file mode 100644 index 9e606adde336..000000000000 --- a/pkgs/desktops/kde-4.14/kdeedu/ktouch.nix +++ /dev/null @@ -1,9 +0,0 @@ -{ kde, kdelibs, libxkbfile }: - -kde { - buildInputs = [ kdelibs libxkbfile ]; - - meta = { - description = "Touch Typing Tutor"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeedu/kturtle.nix b/pkgs/desktops/kde-4.14/kdeedu/kturtle.nix deleted file mode 100644 index 1e1922b1410d..000000000000 --- a/pkgs/desktops/kde-4.14/kdeedu/kturtle.nix +++ /dev/null @@ -1,9 +0,0 @@ -{ kde, kdelibs }: - -kde { - buildInputs = [ kdelibs ]; - - meta = { - description = "Educational Programming Environment"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeedu/kwordquiz.nix b/pkgs/desktops/kde-4.14/kdeedu/kwordquiz.nix deleted file mode 100644 index 1b33ba2e469f..000000000000 --- a/pkgs/desktops/kde-4.14/kdeedu/kwordquiz.nix +++ /dev/null @@ -1,9 +0,0 @@ -{ kde, kdelibs, libkdeedu }: - -kde { - buildInputs = [ kdelibs libkdeedu ]; - - meta = { - description = "Flash Card Trainer"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeedu/libkdeedu.nix b/pkgs/desktops/kde-4.14/kdeedu/libkdeedu.nix deleted file mode 100644 index def6c85fefe2..000000000000 --- a/pkgs/desktops/kde-4.14/kdeedu/libkdeedu.nix +++ /dev/null @@ -1,8 +0,0 @@ -{ kde, kdelibs }: -kde { - buildInputs = [ kdelibs ]; - - meta = { - description = "Libraries used by KDE Education applications"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeedu/pairs.nix b/pkgs/desktops/kde-4.14/kdeedu/pairs.nix deleted file mode 100644 index 36c4aba9604b..000000000000 --- a/pkgs/desktops/kde-4.14/kdeedu/pairs.nix +++ /dev/null @@ -1,9 +0,0 @@ -{ kde, kdelibs }: - -kde { - buildInputs = [ kdelibs ]; - - meta = { - description = "A memory and pairs game"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeedu/parley.nix b/pkgs/desktops/kde-4.14/kdeedu/parley.nix deleted file mode 100644 index f9f86dde150d..000000000000 --- a/pkgs/desktops/kde-4.14/kdeedu/parley.nix +++ /dev/null @@ -1,9 +0,0 @@ -{ kde, kdelibs, libkdeedu, attica }: - -kde { - buildInputs = [ kdelibs libkdeedu attica ]; - - meta = { - description = "Vocabulary Trainer"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeedu/rocs.nix b/pkgs/desktops/kde-4.14/kdeedu/rocs.nix deleted file mode 100644 index 76131d8f0f0f..000000000000 --- a/pkgs/desktops/kde-4.14/kdeedu/rocs.nix +++ /dev/null @@ -1,16 +0,0 @@ -{ kde, kdelibs, boost, grantlee }: - -kde { - patches = [ ../files/rocs-0001-duplicate-add_test.patch ]; - - buildInputs = [ kdelibs (boost.override { enableExceptions = true; }) grantlee ]; - - NIX_CFLAGS_COMPILE = "-fexceptions"; - - meta = { - description = "A KDE graph theory viewer"; - kde = { - name = "rocs"; - }; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeedu/step.nix b/pkgs/desktops/kde-4.14/kdeedu/step.nix deleted file mode 100644 index 95e991e84815..000000000000 --- a/pkgs/desktops/kde-4.14/kdeedu/step.nix +++ /dev/null @@ -1,12 +0,0 @@ -{ kde, kdelibs, gsl, libqalculate, eigen2, pkgconfig }: - -kde { - - buildInputs = [ kdelibs gsl libqalculate eigen2 ]; - - nativeBuildInputs = [ pkgconfig ]; - - meta = { - description = "A KDE interactive physical simulator"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdegames/bomber.nix b/pkgs/desktops/kde-4.14/kdegames/bomber.nix deleted file mode 100644 index 542ff24f5e65..000000000000 --- a/pkgs/desktops/kde-4.14/kdegames/bomber.nix +++ /dev/null @@ -1,7 +0,0 @@ -{ kde, kdelibs, libkdegames }: -kde { - buildInputs = [ kdelibs libkdegames ]; - meta = { - description = "A single player arcade game. The player is invading various cities in a plane that is decreasing in height"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdegames/bovo.nix b/pkgs/desktops/kde-4.14/kdegames/bovo.nix deleted file mode 100644 index 89dff46129b6..000000000000 --- a/pkgs/desktops/kde-4.14/kdegames/bovo.nix +++ /dev/null @@ -1,8 +0,0 @@ -{ kde, kdelibs, libkdegames }: -kde { - buildInputs = [ kdelibs libkdegames ]; - meta = { - description = "A Gomoku (from Japanese 五目並べ - lit. \"five points\") like game for two players, where the opponents alternate in placing their respective pictogram on the game board"; - }; - -} diff --git a/pkgs/desktops/kde-4.14/kdegames/granatier.nix b/pkgs/desktops/kde-4.14/kdegames/granatier.nix deleted file mode 100644 index 50c3bf985b5b..000000000000 --- a/pkgs/desktops/kde-4.14/kdegames/granatier.nix +++ /dev/null @@ -1,7 +0,0 @@ -{ kde, kdelibs, libkdegames }: -kde { - buildInputs = [ kdelibs libkdegames ]; - meta = { - description = "A clone of the classic Bomberman game, inspired by the work of the Clanbomber clone"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdegames/kajongg.nix b/pkgs/desktops/kde-4.14/kdegames/kajongg.nix deleted file mode 100644 index cea4fb38b4fb..000000000000 --- a/pkgs/desktops/kde-4.14/kdegames/kajongg.nix +++ /dev/null @@ -1,13 +0,0 @@ -{ kde, kdelibs, libkdegames, pythonPackages, sqlite, pykde4 }: -kde rec { - - buildInputs = [ kdelibs libkdegames pythonPackages.python pythonPackages.wrapPython sqlite ] ++ pythonPath; - - pythonPath = [ pythonPackages.twisted pykde4 ]; - - postInstall = "wrapPythonPrograms"; - - meta = { - description = "An ancient Chinese board game for 4 players"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdegames/kapman.nix b/pkgs/desktops/kde-4.14/kdegames/kapman.nix deleted file mode 100644 index 616533911ff8..000000000000 --- a/pkgs/desktops/kde-4.14/kdegames/kapman.nix +++ /dev/null @@ -1,7 +0,0 @@ -{ kde, kdelibs, libkdegames }: -kde { - buildInputs = [ kdelibs libkdegames ]; - meta = { - description = "A clone of the well known game Pac-Man"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdegames/katomic.nix b/pkgs/desktops/kde-4.14/kdegames/katomic.nix deleted file mode 100644 index 3f7c1343289a..000000000000 --- a/pkgs/desktops/kde-4.14/kdegames/katomic.nix +++ /dev/null @@ -1,7 +0,0 @@ -{ kde, kdelibs, libkdegames }: -kde { - buildInputs = [ kdelibs libkdegames ]; - meta = { - description = "A fun and educational puzzle game built around molecular geometry"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdegames/kblackbox.nix b/pkgs/desktops/kde-4.14/kdegames/kblackbox.nix deleted file mode 100644 index 1e20cf0051ea..000000000000 --- a/pkgs/desktops/kde-4.14/kdegames/kblackbox.nix +++ /dev/null @@ -1,7 +0,0 @@ -{ kde, kdelibs, libkdegames }: -kde { - buildInputs = [ kdelibs libkdegames ]; - meta = { - description = "A game of hide and seek played on an grid of boxes, where the player shoots rays into the grid to deduce the positions of hidden objects"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdegames/kblocks.nix b/pkgs/desktops/kde-4.14/kdegames/kblocks.nix deleted file mode 100644 index 08e8c62d2629..000000000000 --- a/pkgs/desktops/kde-4.14/kdegames/kblocks.nix +++ /dev/null @@ -1,7 +0,0 @@ -{ kde, kdelibs, libkdegames }: -kde { - buildInputs = [ kdelibs libkdegames ]; - meta = { - description = "A classic single player falling blocks puzzle game"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdegames/kbounce.nix b/pkgs/desktops/kde-4.14/kdegames/kbounce.nix deleted file mode 100644 index 291e4c65a43a..000000000000 --- a/pkgs/desktops/kde-4.14/kdegames/kbounce.nix +++ /dev/null @@ -1,7 +0,0 @@ -{ kde, kdelibs, libkdegames }: -kde { - buildInputs = [ kdelibs libkdegames ]; - meta = { - description = "A single player arcade game with the elements of puzzle"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdegames/kbreakout.nix b/pkgs/desktops/kde-4.14/kdegames/kbreakout.nix deleted file mode 100644 index 4c5b2f62852f..000000000000 --- a/pkgs/desktops/kde-4.14/kdegames/kbreakout.nix +++ /dev/null @@ -1,7 +0,0 @@ -{ kde, kdelibs, libkdegames }: -kde { - buildInputs = [ kdelibs libkdegames ]; - meta = { - description = "A Breakout-like game. Its object is to destroy as many bricks as possible without losing the ball"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdegames/kdiamond.nix b/pkgs/desktops/kde-4.14/kdegames/kdiamond.nix deleted file mode 100644 index b21a945a64b9..000000000000 --- a/pkgs/desktops/kde-4.14/kdegames/kdiamond.nix +++ /dev/null @@ -1,7 +0,0 @@ -{ kde, kdelibs, libkdegames }: -kde { - buildInputs = [ kdelibs libkdegames ]; - meta = { - description = "A single player puzzle game. The object of the game is to build lines of three similar diamonds"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdegames/kfourinline.nix b/pkgs/desktops/kde-4.14/kdegames/kfourinline.nix deleted file mode 100644 index 6504d069660b..000000000000 --- a/pkgs/desktops/kde-4.14/kdegames/kfourinline.nix +++ /dev/null @@ -1,7 +0,0 @@ -{ kde, kdelibs, libkdegames }: -kde { - buildInputs = [ kdelibs libkdegames ]; - meta = { - description = "A board game for two players based on the Connect-Four game"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdegames/kgoldrunner.nix b/pkgs/desktops/kde-4.14/kdegames/kgoldrunner.nix deleted file mode 100644 index 86aff7e77ace..000000000000 --- a/pkgs/desktops/kde-4.14/kdegames/kgoldrunner.nix +++ /dev/null @@ -1,7 +0,0 @@ -{ kde, kdelibs, libkdegames }: -kde { - buildInputs = [ kdelibs libkdegames ]; - meta = { - description = "An action game where the hero runs through a maze, climbs stairs, dig holes and dodges enemies in order to collect all the gold nuggets and escape to the next level"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdegames/kigo.nix b/pkgs/desktops/kde-4.14/kdegames/kigo.nix deleted file mode 100644 index e417e89a0078..000000000000 --- a/pkgs/desktops/kde-4.14/kdegames/kigo.nix +++ /dev/null @@ -1,7 +0,0 @@ -{ kde, kdelibs, libkdegames }: -kde { - buildInputs = [ kdelibs libkdegames ]; - meta = { - description = "An open-source implementation of the popular Go game"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdegames/killbots.nix b/pkgs/desktops/kde-4.14/kdegames/killbots.nix deleted file mode 100644 index 9d8b307be756..000000000000 --- a/pkgs/desktops/kde-4.14/kdegames/killbots.nix +++ /dev/null @@ -1,7 +0,0 @@ -{ kde, kdelibs, libkdegames }: -kde { - buildInputs = [ kdelibs libkdegames ]; - meta = { - description = "A simple game of evading killer robots"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdegames/kiriki.nix b/pkgs/desktops/kde-4.14/kdegames/kiriki.nix deleted file mode 100644 index 433991abd75b..000000000000 --- a/pkgs/desktops/kde-4.14/kdegames/kiriki.nix +++ /dev/null @@ -1,7 +0,0 @@ -{ kde, kdelibs, libkdegames }: -kde { - buildInputs = [ kdelibs libkdegames ]; - meta = { - description = "An addictive and fun dice game, designed to be played by as many as six players"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdegames/kjumpingcube.nix b/pkgs/desktops/kde-4.14/kdegames/kjumpingcube.nix deleted file mode 100644 index 888dba71b662..000000000000 --- a/pkgs/desktops/kde-4.14/kdegames/kjumpingcube.nix +++ /dev/null @@ -1,7 +0,0 @@ -{ kde, kdelibs, libkdegames }: -kde { - buildInputs = [ kdelibs libkdegames ]; - meta = { - description = "A simple dice driven tactical game"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdegames/klickety.nix b/pkgs/desktops/kde-4.14/kdegames/klickety.nix deleted file mode 100644 index 87415f9a4f81..000000000000 --- a/pkgs/desktops/kde-4.14/kdegames/klickety.nix +++ /dev/null @@ -1,7 +0,0 @@ -{ kde, kdelibs, libkdegames }: -kde { - buildInputs = [ kdelibs libkdegames ]; - meta = { - description = "A puzzle game where the player removes groups of colored marbles to clear the board"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdegames/klines.nix b/pkgs/desktops/kde-4.14/kdegames/klines.nix deleted file mode 100644 index e5c32d3fa9ab..000000000000 --- a/pkgs/desktops/kde-4.14/kdegames/klines.nix +++ /dev/null @@ -1,7 +0,0 @@ -{ kde, kdelibs, libkdegames }: -kde { - buildInputs = [ kdelibs libkdegames ]; - meta = { - description = "A simple but highly addictive one player game. The player has to move the colored balls around the game board, gathering them into the lines of the same color by five"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdegames/kmahjongg.nix b/pkgs/desktops/kde-4.14/kdegames/kmahjongg.nix deleted file mode 100644 index 6aca3c229946..000000000000 --- a/pkgs/desktops/kde-4.14/kdegames/kmahjongg.nix +++ /dev/null @@ -1,7 +0,0 @@ -{ kde, kdelibs, libkdegames, libkmahjongg }: -kde { - buildInputs = [ kdelibs libkdegames libkmahjongg ]; - meta = { - description = "The tiles are scrambled and staked on top of each other to resemble a certain shape. The player is then expected to remove all the tiles off the game board by locating each tile's matching pair"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdegames/kmines.nix b/pkgs/desktops/kde-4.14/kdegames/kmines.nix deleted file mode 100644 index c02a61506d75..000000000000 --- a/pkgs/desktops/kde-4.14/kdegames/kmines.nix +++ /dev/null @@ -1,7 +0,0 @@ -{ kde, kdelibs, libkdegames }: -kde { - buildInputs = [ kdelibs libkdegames ]; - meta = { - description = "A classic Minesweeper game"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdegames/knavalbattle.nix b/pkgs/desktops/kde-4.14/kdegames/knavalbattle.nix deleted file mode 100644 index aed9b48511ac..000000000000 --- a/pkgs/desktops/kde-4.14/kdegames/knavalbattle.nix +++ /dev/null @@ -1,7 +0,0 @@ -{ kde, kdelibs, libkdegames }: -kde { - buildInputs = [ kdelibs libkdegames ]; - meta = { - description = "A Battle Ship game"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdegames/knetwalk.nix b/pkgs/desktops/kde-4.14/kdegames/knetwalk.nix deleted file mode 100644 index d7a80f133168..000000000000 --- a/pkgs/desktops/kde-4.14/kdegames/knetwalk.nix +++ /dev/null @@ -1,7 +0,0 @@ -{ kde, kdelibs, libkdegames }: -kde { - buildInputs = [ kdelibs libkdegames ]; - meta = { - description = "A small game where you have to build up a computer network by rotating the wires to connect the terminals to the server"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdegames/kolf.nix b/pkgs/desktops/kde-4.14/kdegames/kolf.nix deleted file mode 100644 index 67a75cb9a36f..000000000000 --- a/pkgs/desktops/kde-4.14/kdegames/kolf.nix +++ /dev/null @@ -1,7 +0,0 @@ -{ kde, kdelibs, libkdegames }: -kde { - buildInputs = [ kdelibs libkdegames ]; - meta = { - description = "A miniature golf game"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdegames/kollision.nix b/pkgs/desktops/kde-4.14/kdegames/kollision.nix deleted file mode 100644 index b0911d093ddd..000000000000 --- a/pkgs/desktops/kde-4.14/kdegames/kollision.nix +++ /dev/null @@ -1,7 +0,0 @@ -{ kde, kdelibs, libkdegames }: -kde { - buildInputs = [ kdelibs libkdegames ]; - meta = { - description = "A simple ball dodging game"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdegames/konquest.nix b/pkgs/desktops/kde-4.14/kdegames/konquest.nix deleted file mode 100644 index 974730a46d0b..000000000000 --- a/pkgs/desktops/kde-4.14/kdegames/konquest.nix +++ /dev/null @@ -1,7 +0,0 @@ -{ kde, kdelibs, libkdegames }: -kde { - buildInputs = [ kdelibs libkdegames ]; - meta = { - description = "The KDE version of Gnu-Lactic Konquest"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdegames/kpat.nix b/pkgs/desktops/kde-4.14/kdegames/kpat.nix deleted file mode 100644 index f33ddfb8570c..000000000000 --- a/pkgs/desktops/kde-4.14/kdegames/kpat.nix +++ /dev/null @@ -1,8 +0,0 @@ -{ kde, kdelibs, libkdegames, shared_mime_info }: -kde { - buildInputs = [ kdelibs libkdegames ]; - nativeBuildInputs = [ shared_mime_info ]; - meta = { - description = "A relaxing card sorting game"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdegames/kreversi.nix b/pkgs/desktops/kde-4.14/kdegames/kreversi.nix deleted file mode 100644 index 065ee4bb657c..000000000000 --- a/pkgs/desktops/kde-4.14/kdegames/kreversi.nix +++ /dev/null @@ -1,7 +0,0 @@ -{ kde, kdelibs, libkdegames }: -kde { - buildInputs = [ kdelibs libkdegames ]; - meta = { - description = "A simple one player strategy game played against the computer. If a player's piece is captured by an opposing player, that piece is turned over to reveal the color of that player"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdegames/kshisen.nix b/pkgs/desktops/kde-4.14/kdegames/kshisen.nix deleted file mode 100644 index 085b91584c70..000000000000 --- a/pkgs/desktops/kde-4.14/kdegames/kshisen.nix +++ /dev/null @@ -1,7 +0,0 @@ -{ kde, kdelibs, libkdegames, libkmahjongg }: -kde { - buildInputs = [ kdelibs libkdegames libkmahjongg ]; - meta = { - description = "A solitaire-like game played using the standard set of Mahjong tiles"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdegames/ksirk.nix b/pkgs/desktops/kde-4.14/kdegames/ksirk.nix deleted file mode 100644 index bfdd8f358dd1..000000000000 --- a/pkgs/desktops/kde-4.14/kdegames/ksirk.nix +++ /dev/null @@ -1,7 +0,0 @@ -{ kde, kdelibs, libkdegames, qca2 }: -kde { - buildInputs = [ kdelibs libkdegames qca2 ]; - meta = { - description = "A computerized version of the well known strategic board game Risk"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdegames/ksnakeduel.nix b/pkgs/desktops/kde-4.14/kdegames/ksnakeduel.nix deleted file mode 100644 index ce5e75336c97..000000000000 --- a/pkgs/desktops/kde-4.14/kdegames/ksnakeduel.nix +++ /dev/null @@ -1,7 +0,0 @@ -{ kde, kdelibs, libkdegames }: -kde { - buildInputs = [ kdelibs libkdegames ]; - meta = { - description = "A simple Tron-Clone"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdegames/kspaceduel.nix b/pkgs/desktops/kde-4.14/kdegames/kspaceduel.nix deleted file mode 100644 index 692eb1c085af..000000000000 --- a/pkgs/desktops/kde-4.14/kdegames/kspaceduel.nix +++ /dev/null @@ -1,7 +0,0 @@ -{ kde, kdelibs, libkdegames }: -kde { - buildInputs = [ kdelibs libkdegames ]; - meta = { - description = "Each of two possible players control a satellite spaceship orbiting the sun. As the game progresses players have to eliminate the opponent's spacecraft with bullets or mines"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdegames/ksquares.nix b/pkgs/desktops/kde-4.14/kdegames/ksquares.nix deleted file mode 100644 index 7cad6bf0e5ae..000000000000 --- a/pkgs/desktops/kde-4.14/kdegames/ksquares.nix +++ /dev/null @@ -1,7 +0,0 @@ -{ kde, kdelibs, libkdegames }: -kde { - buildInputs = [ kdelibs libkdegames ]; - meta = { - description = "A game modeled after the well known pen and paper based game of Dots and Boxes"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdegames/ksudoku.nix b/pkgs/desktops/kde-4.14/kdegames/ksudoku.nix deleted file mode 100644 index 72a6a72b66d5..000000000000 --- a/pkgs/desktops/kde-4.14/kdegames/ksudoku.nix +++ /dev/null @@ -1,7 +0,0 @@ -{ kde, kdelibs, libkdegames }: -kde { - buildInputs = [ kdelibs libkdegames ]; - meta = { - description = "A logic-based symbol placement puzzle"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdegames/ktuberling.nix b/pkgs/desktops/kde-4.14/kdegames/ktuberling.nix deleted file mode 100644 index a4480864fd8b..000000000000 --- a/pkgs/desktops/kde-4.14/kdegames/ktuberling.nix +++ /dev/null @@ -1,7 +0,0 @@ -{ kde, kdelibs, libkdegames }: -kde { - buildInputs = [ kdelibs libkdegames ]; - meta = { - description = "A simple constructor game suitable for children and adults alike"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdegames/kubrick.nix b/pkgs/desktops/kde-4.14/kdegames/kubrick.nix deleted file mode 100644 index f80cf4a8b356..000000000000 --- a/pkgs/desktops/kde-4.14/kdegames/kubrick.nix +++ /dev/null @@ -1,7 +0,0 @@ -{ kde, kdelibs, libkdegames }: -kde { - buildInputs = [ kdelibs libkdegames ]; - meta = { - description = "A game based on the Rubik's Cube™ puzzle"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdegames/libkdegames.nix b/pkgs/desktops/kde-4.14/kdegames/libkdegames.nix deleted file mode 100644 index 3819dcdc9ae2..000000000000 --- a/pkgs/desktops/kde-4.14/kdegames/libkdegames.nix +++ /dev/null @@ -1,7 +0,0 @@ -{ kde, kdelibs, openal, libsndfile }: -kde { - buildInputs = [ kdelibs openal libsndfile ]; - meta = { - description = "KDE games library"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdegames/libkmahjongg.nix b/pkgs/desktops/kde-4.14/kdegames/libkmahjongg.nix deleted file mode 100644 index d7687c1435f7..000000000000 --- a/pkgs/desktops/kde-4.14/kdegames/libkmahjongg.nix +++ /dev/null @@ -1,7 +0,0 @@ -{ kde, kdelibs, libkdegames }: -kde { - buildInputs = [ kdelibs libkdegames ]; - meta = { - description = "A library for KMahjongg game"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdegames/lskat.nix b/pkgs/desktops/kde-4.14/kdegames/lskat.nix deleted file mode 100644 index d3e8268784bb..000000000000 --- a/pkgs/desktops/kde-4.14/kdegames/lskat.nix +++ /dev/null @@ -1,7 +0,0 @@ -{ kde, kdelibs, libkdegames }: -kde { - buildInputs = [ kdelibs libkdegames ]; - meta = { - description = "A fun and engaging card game for two players, where the second player is either live opponent, or a built in artificial intelligence"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdegames/palapeli.nix b/pkgs/desktops/kde-4.14/kdegames/palapeli.nix deleted file mode 100644 index a73fcf100eb7..000000000000 --- a/pkgs/desktops/kde-4.14/kdegames/palapeli.nix +++ /dev/null @@ -1,13 +0,0 @@ -{ kde, kdelibs, libkdegames, shared_mime_info }: -kde { - -# TODO: package qvoronoi - - nativeBuildInputs = [ shared_mime_info ]; - - buildInputs = [ kdelibs libkdegames ]; - - meta = { - description = "A single-player jigsaw puzzle game"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdegames/picmi.nix b/pkgs/desktops/kde-4.14/kdegames/picmi.nix deleted file mode 100644 index 77dcdcf48dce..000000000000 --- a/pkgs/desktops/kde-4.14/kdegames/picmi.nix +++ /dev/null @@ -1,7 +0,0 @@ -{ kde, kdelibs, libkdegames }: -kde { - buildInputs = [ kdelibs libkdegames ]; - meta = { - description = "A single player logic-based puzzle game"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdegraphics/gwenview.nix b/pkgs/desktops/kde-4.14/kdegraphics/gwenview.nix deleted file mode 100644 index 66a7c79a42bc..000000000000 --- a/pkgs/desktops/kde-4.14/kdegraphics/gwenview.nix +++ /dev/null @@ -1,16 +0,0 @@ -{ stdenv, kde, kdelibs, exiv2, kde_baseapps, libkipi, nepomuk_core -, libjpeg, pkgconfig, kactivities, lcms2, baloo, kfilemetadata, libkdcraw }: - -kde { - - buildInputs = - [ kdelibs exiv2 nepomuk_core kactivities kde_baseapps libkipi libjpeg lcms2 - baloo kfilemetadata libkdcraw ]; - - nativeBuildInputs = [ pkgconfig ]; - - meta = { - description = "Gwenview, the KDE image viewer"; - license = stdenv.lib.licenses.gpl2; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdegraphics/kamera.nix b/pkgs/desktops/kde-4.14/kdegraphics/kamera.nix deleted file mode 100644 index d9aa11c54afa..000000000000 --- a/pkgs/desktops/kde-4.14/kdegraphics/kamera.nix +++ /dev/null @@ -1,10 +0,0 @@ -{ stdenv, kde, kdelibs, libgphoto2 }: - -kde { - buildInputs = [ kdelibs libgphoto2 ]; - - meta = { - description = "KDE camera interface library"; - license = stdenv.lib.licenses.gpl2; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdegraphics/kcolorchooser.nix b/pkgs/desktops/kde-4.14/kdegraphics/kcolorchooser.nix deleted file mode 100644 index e06c1b5d307c..000000000000 --- a/pkgs/desktops/kde-4.14/kdegraphics/kcolorchooser.nix +++ /dev/null @@ -1,10 +0,0 @@ -{ stdenv, kde, kdelibs }: - -kde { - buildInputs = [ kdelibs ]; - - meta = { - description = "A small utility to select a color"; - license = stdenv.lib.licenses.gpl2; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdegraphics/kdegraphics-mobipocket.nix b/pkgs/desktops/kde-4.14/kdegraphics/kdegraphics-mobipocket.nix deleted file mode 100644 index e834762feb52..000000000000 --- a/pkgs/desktops/kde-4.14/kdegraphics/kdegraphics-mobipocket.nix +++ /dev/null @@ -1,10 +0,0 @@ -{ stdenv, kde, kdelibs, okular }: - -kde { - buildInputs = [ kdelibs okular ]; - - meta = { - description = "A collection of plugins to handle mobipocket files"; - license = stdenv.lib.licenses.gpl2; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdegraphics/kdegraphics-strigi-analyzer.nix b/pkgs/desktops/kde-4.14/kdegraphics/kdegraphics-strigi-analyzer.nix deleted file mode 100644 index d9d35808ac50..000000000000 --- a/pkgs/desktops/kde-4.14/kdegraphics/kdegraphics-strigi-analyzer.nix +++ /dev/null @@ -1,10 +0,0 @@ -{ stdenv, kde, kdelibs, libtiff }: - -kde { - buildInputs = [ kdelibs libtiff ]; - - meta = { - description = "Strigi analyzers for various graphics file formats"; - license = stdenv.lib.licenses.gpl2; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdegraphics/kdegraphics-thumbnailers.nix b/pkgs/desktops/kde-4.14/kdegraphics/kdegraphics-thumbnailers.nix deleted file mode 100644 index d6207689512f..000000000000 --- a/pkgs/desktops/kde-4.14/kdegraphics/kdegraphics-thumbnailers.nix +++ /dev/null @@ -1,13 +0,0 @@ -{ stdenv, kde, kdelibs, libkexiv2, libkdcraw, pkgconfig }: - -kde { - - buildInputs = [ kdelibs libkexiv2 libkdcraw ]; - - nativeBuildInputs = [ pkgconfig ]; - - meta = { - description = "Thumbnailers for various graphics file formats"; - license = stdenv.lib.licenses.gpl2; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdegraphics/kgamma.nix b/pkgs/desktops/kde-4.14/kdegraphics/kgamma.nix deleted file mode 100644 index 016312c199e5..000000000000 --- a/pkgs/desktops/kde-4.14/kdegraphics/kgamma.nix +++ /dev/null @@ -1,10 +0,0 @@ -{ stdenv, kde, kdelibs, libXxf86vm }: - -kde { - buildInputs = [ kdelibs libXxf86vm ]; - - meta = { - description = "KDE monitor calibration tool"; - license = stdenv.lib.licenses.gpl2; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdegraphics/kolourpaint.nix b/pkgs/desktops/kde-4.14/kdegraphics/kolourpaint.nix deleted file mode 100644 index ecf34e5ae9e5..000000000000 --- a/pkgs/desktops/kde-4.14/kdegraphics/kolourpaint.nix +++ /dev/null @@ -1,10 +0,0 @@ -{ stdenv, kde, kdelibs, qimageblitz }: - -kde { - buildInputs = [ kdelibs qimageblitz ]; - - meta = { - description = "KDE paint program"; - license = stdenv.lib.licenses.gpl2; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdegraphics/kruler.nix b/pkgs/desktops/kde-4.14/kdegraphics/kruler.nix deleted file mode 100644 index 209331d9e83d..000000000000 --- a/pkgs/desktops/kde-4.14/kdegraphics/kruler.nix +++ /dev/null @@ -1,10 +0,0 @@ -{ stdenv, kde, kdelibs }: - -kde { - buildInputs = [ kdelibs ]; - - meta = { - description = "KDE screen ruler"; - license = stdenv.lib.licenses.gpl2; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdegraphics/ksaneplugin.nix b/pkgs/desktops/kde-4.14/kdegraphics/ksaneplugin.nix deleted file mode 100644 index f541c4bdb4df..000000000000 --- a/pkgs/desktops/kde-4.14/kdegraphics/ksaneplugin.nix +++ /dev/null @@ -1,10 +0,0 @@ -{ stdenv, kde, kdelibs, libksane }: - -kde { - buildInputs = [ kdelibs libksane ]; - - meta = { - description = "A KScan plugin that implements the scanning through libksane"; - license = stdenv.lib.licenses.gpl2; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdegraphics/ksnapshot.nix b/pkgs/desktops/kde-4.14/kdegraphics/ksnapshot.nix deleted file mode 100644 index a9897d270bb6..000000000000 --- a/pkgs/desktops/kde-4.14/kdegraphics/ksnapshot.nix +++ /dev/null @@ -1,10 +0,0 @@ -{ stdenv, kde, kdelibs, libkipi }: - -kde { - buildInputs = [ kdelibs libkipi ]; - - meta = { - description = "KDE screenshot utility"; - license = stdenv.lib.licenses.gpl2; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdegraphics/libkipi.nix b/pkgs/desktops/kde-4.14/kdegraphics/libkipi.nix deleted file mode 100644 index 65e6c52bd44f..000000000000 --- a/pkgs/desktops/kde-4.14/kdegraphics/libkipi.nix +++ /dev/null @@ -1,10 +0,0 @@ -{ stdenv, kde, kdelibs }: - -kde { - buildInputs = [ kdelibs ]; - - meta = { - description = "Interface library to kipi-plugins"; - license = stdenv.lib.licenses.gpl2; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdegraphics/libksane.nix b/pkgs/desktops/kde-4.14/kdegraphics/libksane.nix deleted file mode 100644 index d55419f02c75..000000000000 --- a/pkgs/desktops/kde-4.14/kdegraphics/libksane.nix +++ /dev/null @@ -1,10 +0,0 @@ -{ stdenv, kde, kdelibs, sane-backends }: - -kde { - buildInputs = [ kdelibs sane-backends ]; - - meta = { - description = "An image scanning library that provides a QWidget that contains all the logic needed to interface a sacanner"; - license = stdenv.lib.licenses.gpl2; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdelibs/baloo-widgets.nix b/pkgs/desktops/kde-4.14/kdelibs/baloo-widgets.nix deleted file mode 100644 index 46567b5e2a71..000000000000 --- a/pkgs/desktops/kde-4.14/kdelibs/baloo-widgets.nix +++ /dev/null @@ -1,11 +0,0 @@ -{ stdenv, kde, kdelibs, baloo, kfilemetadata, pkgconfig }: - -kde { - buildInputs = [ kdelibs baloo kfilemetadata ]; - nativeBuildInputs = [ pkgconfig ]; - - meta = { - description = "Baloo Widgets"; - license = stdenv.lib.licenses.gpl2; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdelibs/nepomuk-core.nix b/pkgs/desktops/kde-4.14/kdelibs/nepomuk-core.nix deleted file mode 100644 index b990628889b6..000000000000 --- a/pkgs/desktops/kde-4.14/kdelibs/nepomuk-core.nix +++ /dev/null @@ -1,20 +0,0 @@ -{ stdenv, kde, kdelibs, soprano, shared_desktop_ontologies, exiv2, ffmpeg, taglib, poppler_qt4 -, pkgconfig, doxygen, ebook_tools, automoc4, cmake, perl -}: - -kde { - -# TODO: qmobipocket - - buildInputs = [ - kdelibs soprano shared_desktop_ontologies taglib exiv2 ffmpeg - poppler_qt4 ebook_tools - ]; - - nativeBuildInputs = [ automoc4 cmake perl pkgconfig doxygen ]; - - meta = { - description = "NEPOMUK core"; - license = stdenv.lib.licenses.gpl2; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdelibs/nepomuk-widgets.nix b/pkgs/desktops/kde-4.14/kdelibs/nepomuk-widgets.nix deleted file mode 100644 index b0fc5ad8900d..000000000000 --- a/pkgs/desktops/kde-4.14/kdelibs/nepomuk-widgets.nix +++ /dev/null @@ -1,11 +0,0 @@ -{ stdenv, kde, kdelibs, nepomuk_core }: - -kde { - - buildInputs = [ kdelibs nepomuk_core ]; - - meta = { - description = "NEPOMUK Widgets"; - license = stdenv.lib.licenses.gpl2; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdemultimedia/audiocd-kio.nix b/pkgs/desktops/kde-4.14/kdemultimedia/audiocd-kio.nix deleted file mode 100644 index 20e63baf723f..000000000000 --- a/pkgs/desktops/kde-4.14/kdemultimedia/audiocd-kio.nix +++ /dev/null @@ -1,7 +0,0 @@ -{ kde, kdelibs, libkcompactdisc, cdparanoia, libkcddb, libvorbis, flac, lame }: -kde { - buildInputs = [ kdelibs libkcompactdisc cdparanoia libkcddb libvorbis flac lame ]; - meta = { - description = "Transparent audio CD access for applications using the KDE Platform"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdemultimedia/dragon.nix b/pkgs/desktops/kde-4.14/kdemultimedia/dragon.nix deleted file mode 100644 index bb44c3b7234e..000000000000 --- a/pkgs/desktops/kde-4.14/kdemultimedia/dragon.nix +++ /dev/null @@ -1,7 +0,0 @@ -{ kde, kdelibs }: -kde { - buildInputs = [ kdelibs ]; - meta = { - description = "A multimedia player with the focus on simplicity"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdemultimedia/ffmpegthumbs.nix b/pkgs/desktops/kde-4.14/kdemultimedia/ffmpegthumbs.nix deleted file mode 100644 index 2311b1dda589..000000000000 --- a/pkgs/desktops/kde-4.14/kdemultimedia/ffmpegthumbs.nix +++ /dev/null @@ -1,7 +0,0 @@ -{ kde, kdelibs, ffmpeg }: -kde { - buildInputs = [ kdelibs ffmpeg ]; - meta = { - description = "A video thumbnail generator for KDE file managers like Dolphin and Konqueror"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdemultimedia/juk.nix b/pkgs/desktops/kde-4.14/kdemultimedia/juk.nix deleted file mode 100644 index 1bf5584de2fa..000000000000 --- a/pkgs/desktops/kde-4.14/kdemultimedia/juk.nix +++ /dev/null @@ -1,10 +0,0 @@ -{ kde, kdelibs, taglib_1_9, libtunepimp }: -kde { - -# TODO: opusfile - - buildInputs = [ kdelibs taglib_1_9 libtunepimp ]; - meta = { - description = "An audio jukebox application"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdemultimedia/kmix.nix b/pkgs/desktops/kde-4.14/kdemultimedia/kmix.nix deleted file mode 100644 index 4d36aaf4f68a..000000000000 --- a/pkgs/desktops/kde-4.14/kdemultimedia/kmix.nix +++ /dev/null @@ -1,7 +0,0 @@ -{ kde, kdelibs, libcanberra, libpulseaudio }: -kde { - buildInputs = [ kdelibs libcanberra libpulseaudio ]; - meta = { - description = "Sound mixer, an application to allow you to change the volume of your sound card"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdemultimedia/kscd.nix b/pkgs/desktops/kde-4.14/kdemultimedia/kscd.nix deleted file mode 100644 index e99ae53935b9..000000000000 --- a/pkgs/desktops/kde-4.14/kdemultimedia/kscd.nix +++ /dev/null @@ -1,7 +0,0 @@ -{ kde, kdelibs, libmusicbrainz }: -kde { - buildInputs = [ kdelibs libmusicbrainz ]; - meta = { - description = "KDE CD player"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdemultimedia/libkcompactdisc.nix b/pkgs/desktops/kde-4.14/kdemultimedia/libkcompactdisc.nix deleted file mode 100644 index 6ed08af89f33..000000000000 --- a/pkgs/desktops/kde-4.14/kdemultimedia/libkcompactdisc.nix +++ /dev/null @@ -1,7 +0,0 @@ -{ kde, kdelibs }: -kde { - buildInputs = [ kdelibs ]; - meta = { - description = "KDE library for playing & ripping CDs"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdemultimedia/mplayerthumbs.nix b/pkgs/desktops/kde-4.14/kdemultimedia/mplayerthumbs.nix deleted file mode 100644 index c34b849f4c92..000000000000 --- a/pkgs/desktops/kde-4.14/kdemultimedia/mplayerthumbs.nix +++ /dev/null @@ -1,7 +0,0 @@ -{ kde, kdelibs }: -kde { - buildInputs = [ kdelibs ]; - meta = { - description = "A video thumbnail generator for KDE"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdenetwork/kdenetwork-filesharing.nix b/pkgs/desktops/kde-4.14/kdenetwork/kdenetwork-filesharing.nix deleted file mode 100644 index 0330511a258b..000000000000 --- a/pkgs/desktops/kde-4.14/kdenetwork/kdenetwork-filesharing.nix +++ /dev/null @@ -1,9 +0,0 @@ -{ kde, kdelibs }: - -kde { - buildInputs = [ kdelibs ]; - - meta = { - description = "KDE properties dialog plugin to share a directory with the local network"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdenetwork/kdenetwork-strigi-analyzers.nix b/pkgs/desktops/kde-4.14/kdenetwork/kdenetwork-strigi-analyzers.nix deleted file mode 100644 index e838d84fc5eb..000000000000 --- a/pkgs/desktops/kde-4.14/kdenetwork/kdenetwork-strigi-analyzers.nix +++ /dev/null @@ -1,9 +0,0 @@ -{ kde, kdelibs, boost }: - -kde { - buildInputs = [ kdelibs boost ]; - - meta = { - description = "Strigi analyzers for various network protocols"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdenetwork/kget.nix b/pkgs/desktops/kde-4.14/kdenetwork/kget.nix deleted file mode 100644 index f986da2de214..000000000000 --- a/pkgs/desktops/kde-4.14/kdenetwork/kget.nix +++ /dev/null @@ -1,20 +0,0 @@ -{ kde, kdelibs, libktorrent, kde_workspace, sqlite, boost -, kde_baseapps, libmms, qca2, nepomuk_core, nepomuk_widgets -, pkgconfig }: - -kde { - -# TODO: QGpgME - - buildInputs = - [ kdelibs libktorrent nepomuk_core nepomuk_widgets sqlite qca2 - libmms kde_baseapps kde_workspace boost ]; - - nativeBuildInputs = [ pkgconfig ]; - - KDEDIRS = libktorrent; - - meta = { - description = "KDE download manager"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdenetwork/kopete.nix b/pkgs/desktops/kde-4.14/kdenetwork/kopete.nix deleted file mode 100644 index f5750d60045f..000000000000 --- a/pkgs/desktops/kde-4.14/kdenetwork/kopete.nix +++ /dev/null @@ -1,34 +0,0 @@ -{ kde, kdelibs, libmsn, libotr, kdepimlibs, qimageblitz, libktorrent, - jasper, libidn, mediastreamer, pkgconfig, libxslt, giflib, - libgadu, boost, qca2, sqlite, jsoncpp, - ortp, srtp, libv4l, fetchurl }: - -kde { - -# TODO: libmeanwhile, xmms, jsoncpp(not found), kleopatra(from kdepim but doesn't install headers?), - - patches = [ - (fetchurl { - name = "kopete.patch"; - url = "https://bugs.kde.org/attachment.cgi?id=91567"; - sha256 = "0a44rjiqzn6v3sywm17d1741sygbvlfnbqadq7qbdj3amny014m1"; - }) - ]; - - buildInputs = [ - kdelibs qca2 mediastreamer libgadu jsoncpp - kdepimlibs qimageblitz sqlite jasper libotr libmsn giflib - libidn libxslt boost - ortp srtp libv4l - ]; - - nativeBuildInputs = [ pkgconfig ]; - - KDEDIRS = libktorrent; - - cmakeFlags = [ "-DBUILD_skypebuttons=TRUE" ]; - - meta = { - description = "A KDE multi-protocol IM client"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdenetwork/kppp.nix b/pkgs/desktops/kde-4.14/kdenetwork/kppp.nix deleted file mode 100644 index 4c6bd65769f7..000000000000 --- a/pkgs/desktops/kde-4.14/kdenetwork/kppp.nix +++ /dev/null @@ -1,9 +0,0 @@ -{ kde, kdelibs }: - -kde { - buildInputs = [ kdelibs ]; - - meta = { - description = "PPP(Dial-Up) client tool"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdenetwork/krdc.nix b/pkgs/desktops/kde-4.14/kdenetwork/krdc.nix deleted file mode 100644 index 12cdd4a569c3..000000000000 --- a/pkgs/desktops/kde-4.14/kdenetwork/krdc.nix +++ /dev/null @@ -1,9 +0,0 @@ -{ kde, kdelibs, libvncserver, freerdp_legacy, telepathy_qt }: - -kde { - buildInputs = [ kdelibs libvncserver freerdp_legacy telepathy_qt ]; - - meta = { - description = "KDE remote desktop client"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdenetwork/krfb.nix b/pkgs/desktops/kde-4.14/kdenetwork/krfb.nix deleted file mode 100644 index cb4857965a34..000000000000 --- a/pkgs/desktops/kde-4.14/kdenetwork/krfb.nix +++ /dev/null @@ -1,9 +0,0 @@ -{ kde, kdelibs, libvncserver, libXdamage, libXtst, libjpeg, telepathy_qt }: - -kde { - buildInputs = [ kdelibs libvncserver libXdamage libXtst libjpeg telepathy_qt ]; - - meta = { - description = "KDE desktop sharing"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdenetwork/zeroconf-ioslave.nix b/pkgs/desktops/kde-4.14/kdenetwork/zeroconf-ioslave.nix deleted file mode 100644 index f65960cc337b..000000000000 --- a/pkgs/desktops/kde-4.14/kdenetwork/zeroconf-ioslave.nix +++ /dev/null @@ -1,9 +0,0 @@ -{ kde, kdelibs }: - -kde { - buildInputs = [ kdelibs ]; - - meta = { - description = "KDE tool that monitors the network for DNS-SD services"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdepim-runtime.nix b/pkgs/desktops/kde-4.14/kdepim-runtime.nix deleted file mode 100644 index e5061a8790af..000000000000 --- a/pkgs/desktops/kde-4.14/kdepim-runtime.nix +++ /dev/null @@ -1,19 +0,0 @@ -{ kde, libxslt, boost, kdepimlibs, akonadi, shared_desktop_ontologies -, shared_mime_info }: - -kde { - -# TODO: libkgapi(2), LibKFbAPI,libkolab, libkolabxml - - buildInputs = [ - kdepimlibs akonadi boost shared_desktop_ontologies - libxslt - ]; - - nativeBuildInputs = [ shared_mime_info ]; - - meta = { - description = "KDE PIM runtime"; - license = "GPL"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdepim.nix b/pkgs/desktops/kde-4.14/kdepim.nix deleted file mode 100644 index df41c85c8ac6..000000000000 --- a/pkgs/desktops/kde-4.14/kdepim.nix +++ /dev/null @@ -1,28 +0,0 @@ -{ kde, boost, gpgme, libassuan, libxslt, kdepimlibs, kdepim_runtime -, akonadi, shared_desktop_ontologies, cyrus_sasl, grantlee, prison -, nepomuk_widgets, kactivities, libXScrnSaver, qjson, baloo -, pkgconfig }: - -kde { - -# TODO: LinkGrammar - - buildInputs = - [ kdepimlibs boost shared_desktop_ontologies akonadi nepomuk_widgets - libxslt cyrus_sasl gpgme libassuan grantlee prison kactivities - libXScrnSaver qjson baloo - ]; - - nativeBuildInputs = [ pkgconfig ]; - - propagatedUserEnvPkgs = [ akonadi kdepimlibs kdepim_runtime ]; - - meta = { - description = "KDE PIM tools"; - longDescription = '' - Contains various personal information management tools for KDE, such as an organizer. - ''; - license = "GPL"; - homepage = http://pim.kde.org; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdepimlibs.nix b/pkgs/desktops/kde-4.14/kdepimlibs.nix index 554d6acd9eb4..5e7643469b64 100644 --- a/pkgs/desktops/kde-4.14/kdepimlibs.nix +++ b/pkgs/desktops/kde-4.14/kdepimlibs.nix @@ -1,5 +1,5 @@ { kde, pkgconfig, boost, cyrus_sasl, gpgme, libical, openldap, prison -, kdelibs, akonadi, libxslt, nepomuk_core +, kdelibs, akonadi, libxslt , shared_mime_info, shared_desktop_ontologies, qjson , automoc4, cmake, perl }: @@ -23,7 +23,7 @@ kde { shared_mime_info ]; - propagatedBuildInputs = [ kdelibs nepomuk_core ]; + propagatedBuildInputs = [ kdelibs ]; # Prevent a dependency on boost.dev. FIXME: move this cmake file to .dev. postInstall = "rm $out/lib/gpgmepp/GpgmeppConfig.cmake"; diff --git a/pkgs/desktops/kde-4.14/kdeplasma-addons.nix b/pkgs/desktops/kde-4.14/kdeplasma-addons.nix deleted file mode 100644 index b4d24f47e490..000000000000 --- a/pkgs/desktops/kde-4.14/kdeplasma-addons.nix +++ /dev/null @@ -1,23 +0,0 @@ -{ kde, kdelibs, marble, shared_desktop_ontologies, pkgconfig -, boost, eigen2, kde_workspace, attica, qca2, qimageblitz -, kdepimlibs, libkexiv2, libqalculate, libXtst, libdbusmenu_qt -, qjson, qoauth, shared_mime_info }: - -kde { - -# TODO: qwt, scim, ibus - - KDEDIRS=marble; - - buildInputs = [ kdelibs boost kde_workspace kdepimlibs attica qjson qoauth - eigen2 qca2 libXtst qimageblitz libqalculate - shared_desktop_ontologies marble libkexiv2 libdbusmenu_qt - ]; - - nativeBuildInputs = [ shared_mime_info ]; - - meta = { - description = "KDE Plasma Addons"; - license = "GPL"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdesdk/cervisia.nix b/pkgs/desktops/kde-4.14/kdesdk/cervisia.nix deleted file mode 100644 index 1dabe46cd429..000000000000 --- a/pkgs/desktops/kde-4.14/kdesdk/cervisia.nix +++ /dev/null @@ -1,9 +0,0 @@ -{ kde, kdelibs }: - -kde { - buildInputs = [ kdelibs ]; - - meta = { - description = "A KDE CVS frontend"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdesdk/dolphin-plugins.nix b/pkgs/desktops/kde-4.14/kdesdk/dolphin-plugins.nix deleted file mode 100644 index ad8132a850e5..000000000000 --- a/pkgs/desktops/kde-4.14/kdesdk/dolphin-plugins.nix +++ /dev/null @@ -1,11 +0,0 @@ -{ kde, kdelibs, kde_baseapps }: - -kde { - - # Needs kdebase for libkonq - buildInputs = [ kdelibs kde_baseapps ]; - - meta = { - description = "Svn, mercurial, git and bazaar plugins for dolphin"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdesdk/kapptemplate.nix b/pkgs/desktops/kde-4.14/kdesdk/kapptemplate.nix deleted file mode 100644 index 391536248dd3..000000000000 --- a/pkgs/desktops/kde-4.14/kdesdk/kapptemplate.nix +++ /dev/null @@ -1,9 +0,0 @@ -{ kde, kdelibs }: - -kde { - buildInputs = [ kdelibs ]; - - meta = { - description = "A KDE 4 project template generator"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdesdk/kcachegrind.nix b/pkgs/desktops/kde-4.14/kdesdk/kcachegrind.nix deleted file mode 100644 index 65d410cca48d..000000000000 --- a/pkgs/desktops/kde-4.14/kdesdk/kcachegrind.nix +++ /dev/null @@ -1,9 +0,0 @@ -{ kde, kdelibs }: - -kde { - buildInputs = [ kdelibs ]; - - meta = { - description = "KDE Frontend for Callgrind/Cachegrind"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdesdk/kde-dev-scripts.nix b/pkgs/desktops/kde-4.14/kdesdk/kde-dev-scripts.nix deleted file mode 100644 index df81145e5d60..000000000000 --- a/pkgs/desktops/kde-4.14/kdesdk/kde-dev-scripts.nix +++ /dev/null @@ -1,9 +0,0 @@ -{ kde, kdelibs }: - -kde { - buildInputs = [ kdelibs ]; - - meta = { - description = "Various scripts to ease KDE development"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdesdk/kde-dev-utils.nix b/pkgs/desktops/kde-4.14/kdesdk/kde-dev-utils.nix deleted file mode 100644 index 5d4f83e26562..000000000000 --- a/pkgs/desktops/kde-4.14/kdesdk/kde-dev-utils.nix +++ /dev/null @@ -1,11 +0,0 @@ -{ kde, kdelibs, gcc, libtool }: - -kde { - buildInputs = [ kdelibs libtool ]; - - preConfigure = "export CMAKE_PREFIX_PATH=$CMAKE_PREFIX_PATH:${gcc}:${gcc.cc}"; - - meta = { - description = "Various KDE development utilities"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdesdk/kdesdk-kioslaves.nix b/pkgs/desktops/kde-4.14/kdesdk/kdesdk-kioslaves.nix deleted file mode 100644 index 98bbce35a97c..000000000000 --- a/pkgs/desktops/kde-4.14/kdesdk/kdesdk-kioslaves.nix +++ /dev/null @@ -1,12 +0,0 @@ -{ kde, kdelibs, subversionClient, apr, aprutil,perl }: - -kde { - - buildInputs = [ kdelibs subversionClient apr aprutil perl ]; - - cmakeFlags = [ "-DBUILD_perldoc=ON" ]; - - meta = { - description = "Subversion and perldoc kioslaves"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdesdk/kdesdk-strigi-analyzers.nix b/pkgs/desktops/kde-4.14/kdesdk/kdesdk-strigi-analyzers.nix deleted file mode 100644 index 4d579b88ba8a..000000000000 --- a/pkgs/desktops/kde-4.14/kdesdk/kdesdk-strigi-analyzers.nix +++ /dev/null @@ -1,9 +0,0 @@ -{ kde, kdelibs }: - -kde { - buildInputs = [ kdelibs ]; - - meta = { - description = "Strigi analyzers for diff, po and ts"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdesdk/kdesdk-thumbnailers.nix b/pkgs/desktops/kde-4.14/kdesdk/kdesdk-thumbnailers.nix deleted file mode 100644 index d707fe9038fe..000000000000 --- a/pkgs/desktops/kde-4.14/kdesdk/kdesdk-thumbnailers.nix +++ /dev/null @@ -1,10 +0,0 @@ -{ kde, kdelibs, gettext }: - -kde { - - buildInputs = [ kdelibs gettext ]; - - meta = { - description = "PO file format thumbnailer"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdesdk/kompare.nix b/pkgs/desktops/kde-4.14/kdesdk/kompare.nix deleted file mode 100644 index 644c7c48dc97..000000000000 --- a/pkgs/desktops/kde-4.14/kdesdk/kompare.nix +++ /dev/null @@ -1,9 +0,0 @@ -{ kde, kdelibs, libkomparediff2 }: - -kde { - buildInputs = [ kdelibs libkomparediff2 ]; - - meta = { - description = "A program to view the differences between files and optionally generate a diff"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdesdk/libkomparediff2.nix b/pkgs/desktops/kde-4.14/kdesdk/libkomparediff2.nix deleted file mode 100644 index 5933682c70a0..000000000000 --- a/pkgs/desktops/kde-4.14/kdesdk/libkomparediff2.nix +++ /dev/null @@ -1,9 +0,0 @@ -{ kde, kdelibs }: - -kde { - buildInputs = [ kdelibs ]; - - meta = { - description = "A library to compare files and strings"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdesdk/lokalize.nix b/pkgs/desktops/kde-4.14/kdesdk/lokalize.nix deleted file mode 100644 index 1565426eb1fc..000000000000 --- a/pkgs/desktops/kde-4.14/kdesdk/lokalize.nix +++ /dev/null @@ -1,13 +0,0 @@ -{ kde, kdelibs, hunspell }: - -kde { - buildInputs = [ kdelibs hunspell ]; - - meta = { - description = "KDE 4 Computer-aided translation system"; - longDescription = '' - Computer-aided translation system. - Do not translate what had already been translated. - ''; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdesdk/okteta.nix b/pkgs/desktops/kde-4.14/kdesdk/okteta.nix deleted file mode 100644 index 77108c76adc3..000000000000 --- a/pkgs/desktops/kde-4.14/kdesdk/okteta.nix +++ /dev/null @@ -1,15 +0,0 @@ -{ kde, kdelibs, qca2, shared_mime_info }: - -kde { - buildInputs = [ kdelibs qca2 ]; - - nativeBuildInputs = [ shared_mime_info ]; - -# TODO: Look what does -DBUILD_mobile add - - enableParallelBuilding = false; - - meta = { - description = "KDE byte editor"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdesdk/poxml.nix b/pkgs/desktops/kde-4.14/kdesdk/poxml.nix deleted file mode 100644 index 6e46c3e3ab4f..000000000000 --- a/pkgs/desktops/kde-4.14/kdesdk/poxml.nix +++ /dev/null @@ -1,9 +0,0 @@ -{ kde, kdelibs, antlr, gettext }: - -kde { - buildInputs = [ kdelibs antlr gettext ]; - - meta = { - description = "Po<->xml tools"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdesdk/umbrello.nix b/pkgs/desktops/kde-4.14/kdesdk/umbrello.nix deleted file mode 100644 index e83a2d9a901b..000000000000 --- a/pkgs/desktops/kde-4.14/kdesdk/umbrello.nix +++ /dev/null @@ -1,9 +0,0 @@ -{ kde, kdelibs, libxml2, libxslt, boost }: - -kde { - buildInputs = [ kdelibs libxml2 libxslt boost ]; - - meta = { - description = "Umbrello UML modeller"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdetoys/amor.nix b/pkgs/desktops/kde-4.14/kdetoys/amor.nix deleted file mode 100644 index 936d63d544a9..000000000000 --- a/pkgs/desktops/kde-4.14/kdetoys/amor.nix +++ /dev/null @@ -1,9 +0,0 @@ -{ kde, kdelibs }: - -kde { - buildInputs = [ kdelibs ]; - - meta = { - description = "KDE creature for your desktop"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdetoys/kteatime.nix b/pkgs/desktops/kde-4.14/kdetoys/kteatime.nix deleted file mode 100644 index dacf54def4b0..000000000000 --- a/pkgs/desktops/kde-4.14/kdetoys/kteatime.nix +++ /dev/null @@ -1,9 +0,0 @@ -{ kde, kdelibs }: - -kde { - buildInputs = [ kdelibs ]; - - meta = { - description = "KDE utility for making a fine cup of tea"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdetoys/ktux.nix b/pkgs/desktops/kde-4.14/kdetoys/ktux.nix deleted file mode 100644 index 108f9be7c722..000000000000 --- a/pkgs/desktops/kde-4.14/kdetoys/ktux.nix +++ /dev/null @@ -1,9 +0,0 @@ -{ kde, kdelibs, kde_workspace }: - -kde { - buildInputs = [ kdelibs kde_workspace ]; - - meta = { - description = "Tux Screen Saver"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeutils/ark.nix b/pkgs/desktops/kde-4.14/kdeutils/ark.nix deleted file mode 100644 index 99844b909fd7..000000000000 --- a/pkgs/desktops/kde-4.14/kdeutils/ark.nix +++ /dev/null @@ -1,17 +0,0 @@ -{ makeWrapper, kde, kdelibs, libarchive, bzip2, kde_baseapps, lzma, qjson -, unzip }: - -kde { - buildInputs = [ - makeWrapper kdelibs kde_baseapps libarchive bzip2 lzma qjson - ]; - - postInstall = '' - wrapProgram $out/bin/ark \ - --prefix PATH ":" "${unzip}/bin" - ''; - - meta = { - description = "KDE Archiving Tool"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeutils/filelight.nix b/pkgs/desktops/kde-4.14/kdeutils/filelight.nix deleted file mode 100644 index 25ecabed27ce..000000000000 --- a/pkgs/desktops/kde-4.14/kdeutils/filelight.nix +++ /dev/null @@ -1,9 +0,0 @@ -{ kde, kdelibs }: - -kde { - buildInputs = [ kdelibs ]; - - meta = { - description = "Tool to visualise file and directory sizes"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeutils/kcalc.nix b/pkgs/desktops/kde-4.14/kdeutils/kcalc.nix deleted file mode 100644 index 08b202e8f0e8..000000000000 --- a/pkgs/desktops/kde-4.14/kdeutils/kcalc.nix +++ /dev/null @@ -1,9 +0,0 @@ -{ kde, kdelibs, gmp }: - -kde { - buildInputs = [ kdelibs gmp ]; - - meta = { - description = "KDE Calculator"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeutils/kcharselect.nix b/pkgs/desktops/kde-4.14/kdeutils/kcharselect.nix deleted file mode 100644 index d4c9c06f483d..000000000000 --- a/pkgs/desktops/kde-4.14/kdeutils/kcharselect.nix +++ /dev/null @@ -1,9 +0,0 @@ -{ kde, kdelibs }: - -kde { - buildInputs = [ kdelibs ]; - - meta = { - description = "KDE character selection utility"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeutils/kdf.nix b/pkgs/desktops/kde-4.14/kdeutils/kdf.nix deleted file mode 100644 index 3f9da58d0a62..000000000000 --- a/pkgs/desktops/kde-4.14/kdeutils/kdf.nix +++ /dev/null @@ -1,9 +0,0 @@ -{ kde, kdelibs }: - -kde { - buildInputs = [ kdelibs ]; - - meta = { - description = "KDE free disk space utility"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeutils/kfloppy.nix b/pkgs/desktops/kde-4.14/kdeutils/kfloppy.nix deleted file mode 100644 index 2434a4fa671f..000000000000 --- a/pkgs/desktops/kde-4.14/kdeutils/kfloppy.nix +++ /dev/null @@ -1,9 +0,0 @@ -{ kde, kdelibs }: - -kde { - buildInputs = [ kdelibs ]; - - meta = { - description = "Floppy disk formatting utility"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeutils/kgpg.nix b/pkgs/desktops/kde-4.14/kdeutils/kgpg.nix deleted file mode 100644 index b3f95356d132..000000000000 --- a/pkgs/desktops/kde-4.14/kdeutils/kgpg.nix +++ /dev/null @@ -1,10 +0,0 @@ -{ kde, kdelibs, kdepimlibs, boost, gpgme }: - -kde { - - buildInputs = [ kdelibs kdepimlibs boost gpgme ]; - - meta = { - description = "Simple KDE GUI for GPG"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeutils/kremotecontrol.nix b/pkgs/desktops/kde-4.14/kdeutils/kremotecontrol.nix deleted file mode 100644 index 70311a789f99..000000000000 --- a/pkgs/desktops/kde-4.14/kdeutils/kremotecontrol.nix +++ /dev/null @@ -1,9 +0,0 @@ -{ kde, kdelibs, libXtst }: - -kde { - buildInputs = [ kdelibs libXtst ]; - - meta = { - description = "KDE remote control"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeutils/ktimer.nix b/pkgs/desktops/kde-4.14/kdeutils/ktimer.nix deleted file mode 100644 index 5700977349e3..000000000000 --- a/pkgs/desktops/kde-4.14/kdeutils/ktimer.nix +++ /dev/null @@ -1,9 +0,0 @@ -{ kde, kdelibs }: - -kde { - buildInputs = [ kdelibs ]; - - meta = { - description = "KDE Timer"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeutils/kwalletmanager.nix b/pkgs/desktops/kde-4.14/kdeutils/kwalletmanager.nix deleted file mode 100644 index 9ec0e6c0396c..000000000000 --- a/pkgs/desktops/kde-4.14/kdeutils/kwalletmanager.nix +++ /dev/null @@ -1,9 +0,0 @@ -{ kde, kdelibs }: - -kde { - buildInputs = [ kdelibs ]; - - meta = { - description = "KDE Wallet (password storage) management tool"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeutils/print-manager.nix b/pkgs/desktops/kde-4.14/kdeutils/print-manager.nix deleted file mode 100644 index b53946fae25d..000000000000 --- a/pkgs/desktops/kde-4.14/kdeutils/print-manager.nix +++ /dev/null @@ -1,21 +0,0 @@ -{ kde, kdelibs -, pythonPackages, cups, pykde4, system-config-printer }: - -let s_c_p = system-config-printer.override { withGUI = false; }; in - -kde rec { - buildInputs = [ kdelibs pythonPackages.python pythonPackages.wrapPython - ] ++ pythonPath; - - pythonPath = [ cups pythonPackages.pyqt4 pykde4 pythonPackages.pycups s_c_p ]; - - # system-config-printer supplies some D-Bus policy that we need. - propagatedUserEnvPkgs = [ s_c_p ]; - - postInstall = "wrapPythonPrograms"; - - meta = { - description = "KDE printer manager"; - longDescription = "Applet to view current print jobs and configure new printers"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeutils/superkaramba.nix b/pkgs/desktops/kde-4.14/kdeutils/superkaramba.nix deleted file mode 100644 index cbe7a2856062..000000000000 --- a/pkgs/desktops/kde-4.14/kdeutils/superkaramba.nix +++ /dev/null @@ -1,11 +0,0 @@ -{ kde, kdelibs, qimageblitz, python }: - -kde { - buildInputs = [ kdelibs qimageblitz python ]; - - cmakeFlags = [ "-DBUILD_icons=TRUE" "-DBUILD_plasma=TRUE" ]; - - meta = { - description = "A KDE Eye-candy Application"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdeutils/sweeper.nix b/pkgs/desktops/kde-4.14/kdeutils/sweeper.nix deleted file mode 100644 index 78d56c7df30e..000000000000 --- a/pkgs/desktops/kde-4.14/kdeutils/sweeper.nix +++ /dev/null @@ -1,9 +0,0 @@ -{ kde, kdelibs }: - -kde { - buildInputs = [ kdelibs ]; - - meta = { - description = "Helps clean unwanted traces the user leaves on the system"; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdewebdev/kfilereplace.nix b/pkgs/desktops/kde-4.14/kdewebdev/kfilereplace.nix deleted file mode 100644 index 55e37809e07b..000000000000 --- a/pkgs/desktops/kde-4.14/kdewebdev/kfilereplace.nix +++ /dev/null @@ -1,10 +0,0 @@ -{ kde, kdelibs }: - -kde { - buildInputs = [ kdelibs ]; - - meta = { - description = "Batch search and replace tool"; - homepage = http://www.kdewebdev.org; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdewebdev/kimagemapeditor.nix b/pkgs/desktops/kde-4.14/kdewebdev/kimagemapeditor.nix deleted file mode 100644 index 6d22f72461f9..000000000000 --- a/pkgs/desktops/kde-4.14/kdewebdev/kimagemapeditor.nix +++ /dev/null @@ -1,10 +0,0 @@ -{ kde, kdelibs }: - -kde { - buildInputs = [ kdelibs ]; - - meta = { - description = "An HTML imagemap editor"; - homepage = http://www.nongnu.org/kimagemap/; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdewebdev/klinkstatus.nix b/pkgs/desktops/kde-4.14/kdewebdev/klinkstatus.nix deleted file mode 100644 index b593c952219c..000000000000 --- a/pkgs/desktops/kde-4.14/kdewebdev/klinkstatus.nix +++ /dev/null @@ -1,18 +0,0 @@ -{ kde, kdelibs, libxml2, libxslt, kdepimlibs, html-tidy, boost }: - -kde { - -# todo: ruby19 is not found by the build system. not linking against ruby18 due to it being too old - - postPatch = '' - substituteInPlace klinkstatus/src/tidy/tidyx.h \ - --replace buffio.h tidybuffio.h - ''; - - buildInputs = [ kdelibs kdepimlibs html-tidy boost ]; - - meta = { - description = "A KDE link checker"; - homepage = http://klinkstatus.kdewebdev.org; - }; -} diff --git a/pkgs/desktops/kde-4.14/kdewebdev/kommander.nix b/pkgs/desktops/kde-4.14/kdewebdev/kommander.nix deleted file mode 100644 index d5f4337f714d..000000000000 --- a/pkgs/desktops/kde-4.14/kdewebdev/kommander.nix +++ /dev/null @@ -1,9 +0,0 @@ -{ kde, kdelibs }: - -kde { - buildInputs = [ kdelibs ]; - - meta = { - description = "A graphical editor of scripted dialogs"; - }; -} diff --git a/pkgs/desktops/kde-4.14/oxygen-icons.nix b/pkgs/desktops/kde-4.14/oxygen-icons.nix deleted file mode 100644 index 270707f84928..000000000000 --- a/pkgs/desktops/kde-4.14/oxygen-icons.nix +++ /dev/null @@ -1,15 +0,0 @@ -{ kde, cmake }: - -kde { - outputHashAlgo = "sha256"; - outputHashMode = "recursive"; - outputHash = "156ghknzdrlf48602lcap5vpp691cyba0igdbw53wfqfpaqkap28"; - - nativeBuildInputs = [ cmake ]; - - meta = { - description = "KDE Oxygen theme icons"; - longDescription = "Icons for KDE's default theme"; - license = "GPL"; - }; -} diff --git a/pkgs/desktops/kde-5/applications/default.nix b/pkgs/desktops/kde-5/applications/default.nix deleted file mode 100644 index 3284b2709c86..000000000000 --- a/pkgs/desktops/kde-5/applications/default.nix +++ /dev/null @@ -1,93 +0,0 @@ -/* - -# New packages - -READ THIS FIRST - -This module is for official packages in the KDE Applications Bundle. All -available packages are listed in `./srcs.nix`, although some are not yet -packaged in Nixpkgs (see below). - -IF YOUR PACKAGE IS NOT LISTED IN `./srcs.nix`, IT DOES NOT GO HERE. - -Many of the packages released upstream are not yet built in Nixpkgs due to lack -of demand. To add a Nixpkgs build for an upstream package, copy one of the -existing packages here and modify it as necessary. A simple example package that -still shows most of the available features is in `./gwenview.nix`. - -# Updates - -1. Update the URL in `./fetch.sh`. -2. Run `./maintainers/scripts/fetch-kde-qt.sh pkgs/desktops/kde-5/applications` - from the top of the Nixpkgs tree. -3. Invoke `nix-build -A kde5` and ensure that everything builds. -4. Commit the changes and open a pull request. - -*/ - -{ pkgs, debug ? false }: - -let - - inherit (pkgs) lib stdenv; - - mirror = "mirror://kde"; - srcs = import ./srcs.nix { inherit (pkgs) fetchurl; inherit mirror; }; - - packages = self: with self; { - - kdeApp = import ./kde-app.nix { - inherit lib; - inherit debug srcs; - inherit kdeDerivation; - }; - - kdelibs = callPackage ./kdelibs { - inherit (srcs.kdelibs) src version; - inherit (pkgs) attica phonon; - }; - - akonadi = callPackage ./akonadi.nix {}; - akonadi-contacts = callPackage ./akonadi-contacts.nix {}; - akonadi-mime = callPackage ./akonadi-mime.nix {}; - ark = callPackage ./ark/default.nix {}; - baloo-widgets = callPackage ./baloo-widgets.nix {}; - dolphin = callPackage ./dolphin.nix {}; - dolphin-plugins = callPackage ./dolphin-plugins.nix {}; - ffmpegthumbs = callPackage ./ffmpegthumbs.nix { - ffmpeg = pkgs.ffmpeg_2; - }; - filelight = callPackage ./filelight.nix {}; - gwenview = callPackage ./gwenview.nix {}; - kate = callPackage ./kate.nix {}; - kdenlive = callPackage ./kdenlive.nix {}; - kcalc = callPackage ./kcalc.nix {}; - kcolorchooser = callPackage ./kcolorchooser.nix {}; - kcontacts = callPackage ./kcontacts.nix {}; - kdegraphics-mobipocket = callPackage ./kdegraphics-mobipocket.nix {}; - kdegraphics-thumbnailers = callPackage ./kdegraphics-thumbnailers.nix {}; - kdenetwork-filesharing = callPackage ./kdenetwork-filesharing.nix {}; - kdf = callPackage ./kdf.nix {}; - kgpg = callPackage ./kgpg.nix {}; - khelpcenter = callPackage ./khelpcenter.nix {}; - kig = callPackage ./kig.nix {}; - kio-extras = callPackage ./kio-extras.nix {}; - kmime = callPackage ./kmime.nix {}; - kmix = callPackage ./kmix.nix {}; - kompare = callPackage ./kompare.nix {}; - konsole = callPackage ./konsole.nix {}; - kwalletmanager = callPackage ./kwalletmanager.nix {}; - libkdcraw = callPackage ./libkdcraw.nix {}; - libkexiv2 = callPackage ./libkexiv2.nix {}; - libkipi = callPackage ./libkipi.nix {}; - libkomparediff2 = callPackage ./libkomparediff2.nix {}; - marble = callPackage ./marble.nix {}; - okteta = callPackage ./okteta.nix {}; - okular = callPackage ./okular.nix {}; - print-manager = callPackage ./print-manager.nix {}; - spectacle = callPackage ./spectacle.nix {}; - - l10n = pkgs.recurseIntoAttrs (import ./l10n.nix { inherit callPackage lib pkgs; }); - }; - -in packages diff --git a/pkgs/desktops/kde-5/applications/libkomparediff2.nix b/pkgs/desktops/kde-5/applications/libkomparediff2.nix deleted file mode 100644 index 91b469fed3c7..000000000000 --- a/pkgs/desktops/kde-5/applications/libkomparediff2.nix +++ /dev/null @@ -1,7 +0,0 @@ -{ kdeApp, lib, ecm, ki18n, kxmlgui, kcodecs, kio }: - -kdeApp { - name = "libkomparediff2"; - nativeBuildInputs = [ ecm ]; - propagatedBuildInputs = [ kcodecs ki18n kxmlgui kio ]; -} diff --git a/pkgs/desktops/kde-5/plasma/breeze-qt4.nix b/pkgs/desktops/kde-5/plasma/breeze-qt4.nix deleted file mode 100644 index ad98a41e81dd..000000000000 --- a/pkgs/desktops/kde-5/plasma/breeze-qt4.nix +++ /dev/null @@ -1,24 +0,0 @@ -{ - stdenv, lib, src, version, - automoc4, cmake, perl, pkgconfig, - kdelibs, qt4, xproto -}: - -stdenv.mkDerivation { - name = "breeze-qt4-${version}"; - meta = { - license = with lib.licenses; [ - lgpl21Plus lgpl3Plus bsd2 mit gpl2Plus gpl3Plus fdl12 - ]; - platforms = lib.platforms.linux; - maintainers = with lib.maintainers; [ ttuegel ]; - homepage = "http://www.kde.org"; - }; - inherit src; - buildInputs = [ kdelibs qt4 xproto ]; - nativeBuildInputs = [ automoc4 cmake perl pkgconfig ]; - cmakeFlags = [ - "-DUSE_KDE4=ON" - "-DQT_QMAKE_EXECUTABLE=${qt4}/bin/qmake" - ]; -} diff --git a/pkgs/desktops/kde-5/plasma/default.nix b/pkgs/desktops/kde-5/plasma/default.nix deleted file mode 100644 index 3ac1c51848e9..000000000000 --- a/pkgs/desktops/kde-5/plasma/default.nix +++ /dev/null @@ -1,99 +0,0 @@ -/* - -# New packages - -READ THIS FIRST - -This module is for official packages in KDE Plasma 5. All available packages are -listed in `./srcs.nix`, although a few are not yet packaged in Nixpkgs (see -below). - -IF YOUR PACKAGE IS NOT LISTED IN `./srcs.nix`, IT DOES NOT GO HERE. - -Many of the packages released upstream are not yet built in Nixpkgs due to lack -of demand. To add a Nixpkgs build for an upstream package, copy one of the -existing packages here and modify it as necessary. - -# Updates - -1. Update the URL in `./fetch.sh`. -2. Run `./maintainers/scripts/fetch-kde-qt.sh pkgs/desktops/kde-5/plasma` - from the top of the Nixpkgs tree. -3. Invoke `nix-build -A kde5` and ensure that everything builds. -4. Commit the changes and open a pull request. - -*/ - -{ pkgs, debug ? false }: - -let - - inherit (pkgs) lib makeSetupHook stdenv symlinkJoin; - - mirror = "mirror://kde"; - srcs = import ./srcs.nix { inherit (pkgs) fetchurl; inherit mirror; }; - - packages = self: with self; { - plasmaPackage = args: - let - inherit (args) name; - sname = args.sname or name; - inherit (srcs."${sname}") src version; - in kdeDerivation (args // { - name = "${name}-${version}"; - inherit src; - - meta = { - license = with lib.licenses; [ - lgpl21Plus lgpl3Plus bsd2 mit gpl2Plus gpl3Plus fdl12 - ]; - platforms = lib.platforms.linux; - maintainers = with lib.maintainers; [ ttuegel ]; - homepage = "http://www.kde.org"; - } // (args.meta or {}); - }); - - bluedevil = callPackage ./bluedevil.nix {}; - breeze-gtk = callPackage ./breeze-gtk.nix {}; - breeze-qt4 = callPackage ./breeze-qt4.nix { - inherit (srcs.breeze) src version; - }; - breeze-qt5 = callPackage ./breeze-qt5.nix {}; - breeze-grub = callPackage ./breeze-grub.nix {}; - breeze-plymouth = callPackage ./breeze-plymouth {}; - kactivitymanagerd = callPackage ./kactivitymanagerd.nix {}; - kde-cli-tools = callPackage ./kde-cli-tools.nix {}; - kde-gtk-config = callPackage ./kde-gtk-config {}; - kdecoration = callPackage ./kdecoration.nix {}; - kdeplasma-addons = callPackage ./kdeplasma-addons.nix {}; - kgamma5 = callPackage ./kgamma5.nix {}; - khotkeys = callPackage ./khotkeys.nix {}; - kinfocenter = callPackage ./kinfocenter.nix {}; - kmenuedit = callPackage ./kmenuedit.nix {}; - kscreen = callPackage ./kscreen.nix {}; - kscreenlocker = callPackage ./kscreenlocker.nix {}; - ksshaskpass = callPackage ./ksshaskpass.nix {}; - ksysguard = callPackage ./ksysguard.nix {}; - kwallet-pam = callPackage ./kwallet-pam.nix {}; - kwayland-integration = callPackage ./kwayland-integration.nix {}; - kwin = callPackage ./kwin {}; - kwrited = callPackage ./kwrited.nix {}; - libkscreen = callPackage ./libkscreen.nix {}; - libksysguard = callPackage ./libksysguard {}; - milou = callPackage ./milou.nix {}; - oxygen = callPackage ./oxygen.nix {}; - plasma-desktop = callPackage ./plasma-desktop {}; - plasma-integration = callPackage ./plasma-integration.nix {}; - plasma-nm = callPackage ./plasma-nm {}; - plasma-pa = callPackage ./plasma-pa.nix { - inherit (pkgs.gnome3) gconf; - }; - plasma-workspace = callPackage ./plasma-workspace {}; - plasma-workspace-wallpapers = callPackage ./plasma-workspace-wallpapers.nix {}; - polkit-kde-agent = callPackage ./polkit-kde-agent.nix {}; - powerdevil = callPackage ./powerdevil.nix {}; - startkde = callPackage ./startkde {}; - systemsettings = callPackage ./systemsettings.nix {}; - }; - -in packages diff --git a/pkgs/desktops/kde-5/plasma/fetch.sh b/pkgs/desktops/kde-5/plasma/fetch.sh deleted file mode 100644 index 76f05bad0a77..000000000000 --- a/pkgs/desktops/kde-5/plasma/fetch.sh +++ /dev/null @@ -1 +0,0 @@ -WGET_ARGS=( http://download.kde.org/stable/plasma/5.8.5/ -A '*.tar.xz' ) diff --git a/pkgs/desktops/kde-5/plasma/kdecoration.nix b/pkgs/desktops/kde-5/plasma/kdecoration.nix deleted file mode 100644 index a0f9d93e60b0..000000000000 --- a/pkgs/desktops/kde-5/plasma/kdecoration.nix +++ /dev/null @@ -1,6 +0,0 @@ -{ plasmaPackage, ecm }: - -plasmaPackage { - name = "kdecoration"; - nativeBuildInputs = [ ecm ]; -} diff --git a/pkgs/desktops/kde-5/plasma/kgamma5.nix b/pkgs/desktops/kde-5/plasma/kgamma5.nix deleted file mode 100644 index 70d7cc17a1ca..000000000000 --- a/pkgs/desktops/kde-5/plasma/kgamma5.nix +++ /dev/null @@ -1,9 +0,0 @@ -{ plasmaPackage, ecm, kdoctools, kdelibs4support -, qtx11extras -}: - -plasmaPackage { - name = "kgamma5"; - nativeBuildInputs = [ ecm kdoctools ]; - propagatedBuildInputs = [ kdelibs4support qtx11extras ]; -} diff --git a/pkgs/desktops/kde-5/plasma/khotkeys.nix b/pkgs/desktops/kde-5/plasma/khotkeys.nix deleted file mode 100644 index f23a17e5479e..000000000000 --- a/pkgs/desktops/kde-5/plasma/khotkeys.nix +++ /dev/null @@ -1,22 +0,0 @@ -{ plasmaPackage, ecm, kdoctools, kcmutils -, kdbusaddons, kdelibs4support, kglobalaccel, ki18n, kio, kxmlgui -, plasma-framework, plasma-workspace, qtx11extras -, fetchpatch -}: - -plasmaPackage { - name = "khotkeys"; - nativeBuildInputs = [ ecm kdoctools ]; - - patches = [ - # Patch is in 5.9 and up. - (fetchpatch { - url = "https://cgit.kde.org/khotkeys.git/patch/?id=f8f7eaaf41e2b95ebfa4b2e35c6ee252524a471b"; - sha256 = "1wxx3qv16jd623jh728xcda8i4y1daq25skwilhv4cfvqxyzk7nn"; - }) - ]; - propagatedBuildInputs = [ - kdelibs4support kglobalaccel ki18n kio plasma-framework plasma-workspace - qtx11extras kcmutils kdbusaddons kxmlgui - ]; -} diff --git a/pkgs/desktops/kde-5/plasma/kwallet-pam.nix b/pkgs/desktops/kde-5/plasma/kwallet-pam.nix deleted file mode 100644 index 86ba52292f9e..000000000000 --- a/pkgs/desktops/kde-5/plasma/kwallet-pam.nix +++ /dev/null @@ -1,11 +0,0 @@ -{ plasmaPackage, ecm, pam, socat, libgcrypt -}: - -plasmaPackage { - name = "kwallet-pam"; - - nativeBuildInputs = [ ecm ]; - - buildInputs = [ pam socat libgcrypt ]; - -} diff --git a/pkgs/desktops/kde-5/plasma/srcs.nix b/pkgs/desktops/kde-5/plasma/srcs.nix deleted file mode 100644 index 03ee867453b6..000000000000 --- a/pkgs/desktops/kde-5/plasma/srcs.nix +++ /dev/null @@ -1,325 +0,0 @@ -# DO NOT EDIT! This file is generated automatically by fetch-kde-qt.sh -{ fetchurl, mirror }: - -{ - bluedevil = { - version = "5.8.5"; - src = fetchurl { - url = "${mirror}/stable/plasma/5.8.5/bluedevil-5.8.5.tar.xz"; - sha256 = "07gj3m5f0rk26n0xm4yddsfny6l2sh0airm45hb33p7m5inaqzgv"; - name = "bluedevil-5.8.5.tar.xz"; - }; - }; - breeze = { - version = "5.8.5"; - src = fetchurl { - url = "${mirror}/stable/plasma/5.8.5/breeze-5.8.5.tar.xz"; - sha256 = "1gcns00iq7a5f1a0w6vf8zck669gzcd785fiybnvc6s6q8x4bp61"; - name = "breeze-5.8.5.tar.xz"; - }; - }; - breeze-grub = { - version = "5.8.5"; - src = fetchurl { - url = "${mirror}/stable/plasma/5.8.5/breeze-grub-5.8.5.tar.xz"; - sha256 = "12ynrxdfcraphbwv9yrfhvwf3xkzrw0raqvgi7ksz5cvh78kl5qf"; - name = "breeze-grub-5.8.5.tar.xz"; - }; - }; - breeze-gtk = { - version = "5.8.5"; - src = fetchurl { - url = "${mirror}/stable/plasma/5.8.5/breeze-gtk-5.8.5.tar.xz"; - sha256 = "15dx5hl9w9fiash30vgkbww6h7hck0dr42hh8gzysn0xyf0fzpgd"; - name = "breeze-gtk-5.8.5.tar.xz"; - }; - }; - breeze-plymouth = { - version = "5.8.5"; - src = fetchurl { - url = "${mirror}/stable/plasma/5.8.5/breeze-plymouth-5.8.5.tar.xz"; - sha256 = "1ryb2jrzw0bzpi7ig4h5k0i33d2qviqsjxw7mnqxcb9q49a4ziq1"; - name = "breeze-plymouth-5.8.5.tar.xz"; - }; - }; - discover = { - version = "5.8.5"; - src = fetchurl { - url = "${mirror}/stable/plasma/5.8.5/discover-5.8.5.tar.xz"; - sha256 = "0fr6mksqw46aghfzj78nlq3f89xd63vq2hr4c3gb4vkl5y8v08hg"; - name = "discover-5.8.5.tar.xz"; - }; - }; - kactivitymanagerd = { - version = "5.8.5"; - src = fetchurl { - url = "${mirror}/stable/plasma/5.8.5/kactivitymanagerd-5.8.5.tar.xz"; - sha256 = "07cqnbyznn5wy7vrqyid8h5ah7h3sb3pb30qlm83b4m29bkhggwh"; - name = "kactivitymanagerd-5.8.5.tar.xz"; - }; - }; - kde-cli-tools = { - version = "5.8.5"; - src = fetchurl { - url = "${mirror}/stable/plasma/5.8.5/kde-cli-tools-5.8.5.tar.xz"; - sha256 = "1ig9x5h9xkzis9izggkjpiiy4sm77pk347jdngx01qpacz68iyp7"; - name = "kde-cli-tools-5.8.5.tar.xz"; - }; - }; - kdecoration = { - version = "5.8.5"; - src = fetchurl { - url = "${mirror}/stable/plasma/5.8.5/kdecoration-5.8.5.tar.xz"; - sha256 = "1vhw57pj9i5224i9irk4qmingvkg5bip11vsqiwhmn5307bpnfiq"; - name = "kdecoration-5.8.5.tar.xz"; - }; - }; - kde-gtk-config = { - version = "5.8.5"; - src = fetchurl { - url = "${mirror}/stable/plasma/5.8.5/kde-gtk-config-5.8.5.tar.xz"; - sha256 = "1j0mzmmdhqd3a8papps6cad0gqn081mc4kqzi2hjai7038l6951r"; - name = "kde-gtk-config-5.8.5.tar.xz"; - }; - }; - kdeplasma-addons = { - version = "5.8.5"; - src = fetchurl { - url = "${mirror}/stable/plasma/5.8.5/kdeplasma-addons-5.8.5.tar.xz"; - sha256 = "181kagb4nbl9a7akk79slwkb7m2j4vyhabagih0z8l45wl5wrz9d"; - name = "kdeplasma-addons-5.8.5.tar.xz"; - }; - }; - kgamma5 = { - version = "5.8.5"; - src = fetchurl { - url = "${mirror}/stable/plasma/5.8.5/kgamma5-5.8.5.tar.xz"; - sha256 = "073z4w4i2hwsqqgxcfl0w8d57nhzc069h9zwp7fv93aaw4mgzci2"; - name = "kgamma5-5.8.5.tar.xz"; - }; - }; - khotkeys = { - version = "5.8.5"; - src = fetchurl { - url = "${mirror}/stable/plasma/5.8.5/khotkeys-5.8.5.tar.xz"; - sha256 = "1fh0z9vfb908nbwj3snkf9z55jbcb5id87k5sa0v8dhazmp91ylh"; - name = "khotkeys-5.8.5.tar.xz"; - }; - }; - kinfocenter = { - version = "5.8.5"; - src = fetchurl { - url = "${mirror}/stable/plasma/5.8.5/kinfocenter-5.8.5.tar.xz"; - sha256 = "1fksnb9klbcrr9ly6dd2yx5y1ngcwcln43zykpc76pr4i49jpggp"; - name = "kinfocenter-5.8.5.tar.xz"; - }; - }; - kmenuedit = { - version = "5.8.5"; - src = fetchurl { - url = "${mirror}/stable/plasma/5.8.5/kmenuedit-5.8.5.tar.xz"; - sha256 = "1vq5f69w75lj81nz75db88lqxc4zvhicd5w7r6k7amggnwxm9f3m"; - name = "kmenuedit-5.8.5.tar.xz"; - }; - }; - kscreen = { - version = "5.8.5"; - src = fetchurl { - url = "${mirror}/stable/plasma/5.8.5/kscreen-5.8.5.tar.xz"; - sha256 = "069x3vsfqirmq8r7yfa68srhjvygdwsxcj0b4vvb7zivs29zn1mh"; - name = "kscreen-5.8.5.tar.xz"; - }; - }; - kscreenlocker = { - version = "5.8.5"; - src = fetchurl { - url = "${mirror}/stable/plasma/5.8.5/kscreenlocker-5.8.5.tar.xz"; - sha256 = "11b2v3chhk1ma5kjbmf35qahfr8gbaw78mcqs8vw5m9x74vlimkj"; - name = "kscreenlocker-5.8.5.tar.xz"; - }; - }; - ksshaskpass = { - version = "5.8.5"; - src = fetchurl { - url = "${mirror}/stable/plasma/5.8.5/ksshaskpass-5.8.5.tar.xz"; - sha256 = "1gr48f4akrn0yhlnjw4yaas6ah5z40fb8iz06gi1dzry5axfmaxh"; - name = "ksshaskpass-5.8.5.tar.xz"; - }; - }; - ksysguard = { - version = "5.8.5"; - src = fetchurl { - url = "${mirror}/stable/plasma/5.8.5/ksysguard-5.8.5.tar.xz"; - sha256 = "1gd81y2a459j5k1mpikfrvwcz7v09m526nrl7kpr4l4a1ps8zfy9"; - name = "ksysguard-5.8.5.tar.xz"; - }; - }; - kwallet-pam = { - version = "5.8.5"; - src = fetchurl { - url = "${mirror}/stable/plasma/5.8.5/kwallet-pam-5.8.5.tar.xz"; - sha256 = "0310vr3p9fxl3vwdgklk0acx6w31pcpq8mi9yldahg1mkjqf7l44"; - name = "kwallet-pam-5.8.5.tar.xz"; - }; - }; - kwayland-integration = { - version = "5.8.5"; - src = fetchurl { - url = "${mirror}/stable/plasma/5.8.5/kwayland-integration-5.8.5.tar.xz"; - sha256 = "11f63mq7crsbrpdib16q8xg0hk8jr5x1cyv43q8qdqm0591cglli"; - name = "kwayland-integration-5.8.5.tar.xz"; - }; - }; - kwin = { - version = "5.8.5"; - src = fetchurl { - url = "${mirror}/stable/plasma/5.8.5/kwin-5.8.5.tar.xz"; - sha256 = "182z17d4sad9j15qagx9yz13wwzcyy6hlgpy5nlx6dlfcb8s00x7"; - name = "kwin-5.8.5.tar.xz"; - }; - }; - kwrited = { - version = "5.8.5"; - src = fetchurl { - url = "${mirror}/stable/plasma/5.8.5/kwrited-5.8.5.tar.xz"; - sha256 = "1nsr244niyq2bk29s0cqq1p2qj0h1hx4nl13nc3x3aycfhfkjfkr"; - name = "kwrited-5.8.5.tar.xz"; - }; - }; - libkscreen = { - version = "5.8.5"; - src = fetchurl { - url = "${mirror}/stable/plasma/5.8.5/libkscreen-5.8.5.tar.xz"; - sha256 = "1zj2nzyl0nmg5za3iwr4q4nzfv69f35f0394b6k0g3dgh1zxmby9"; - name = "libkscreen-5.8.5.tar.xz"; - }; - }; - libksysguard = { - version = "5.8.5"; - src = fetchurl { - url = "${mirror}/stable/plasma/5.8.5/libksysguard-5.8.5.tar.xz"; - sha256 = "1acp4kzdjhipsqw90n3rc1ydbkqhb12afwdsfl25fibv0c39avwp"; - name = "libksysguard-5.8.5.tar.xz"; - }; - }; - milou = { - version = "5.8.5"; - src = fetchurl { - url = "${mirror}/stable/plasma/5.8.5/milou-5.8.5.tar.xz"; - sha256 = "0lj5cb43jkqs8qg2acs39dkfwskbw135ap65vxiv27ivxscyvz3d"; - name = "milou-5.8.5.tar.xz"; - }; - }; - oxygen = { - version = "5.8.5"; - src = fetchurl { - url = "${mirror}/stable/plasma/5.8.5/oxygen-5.8.5.tar.xz"; - sha256 = "199jcn6qzyihxmw38b1cl0ah0rzn7f574khx72n9x5y9143p9lh7"; - name = "oxygen-5.8.5.tar.xz"; - }; - }; - plasma-desktop = { - version = "5.8.5"; - src = fetchurl { - url = "${mirror}/stable/plasma/5.8.5/plasma-desktop-5.8.5.tar.xz"; - sha256 = "045990fvhqpwhfi6jqpkzhgbhc3lwvwhkia1y77m12n1djbynpnr"; - name = "plasma-desktop-5.8.5.tar.xz"; - }; - }; - plasma-integration = { - version = "5.8.5"; - src = fetchurl { - url = "${mirror}/stable/plasma/5.8.5/plasma-integration-5.8.5.tar.xz"; - sha256 = "1sm7027ywz8xxqfsjv6jvk8zx11kx83rx88bb8cy31qfjipsakfb"; - name = "plasma-integration-5.8.5.tar.xz"; - }; - }; - plasma-nm = { - version = "5.8.5"; - src = fetchurl { - url = "${mirror}/stable/plasma/5.8.5/plasma-nm-5.8.5.tar.xz"; - sha256 = "1g1yyzc8y2hsgycficvavpl5yizd54ns93cdky9cgsrnxlkfwbvc"; - name = "plasma-nm-5.8.5.tar.xz"; - }; - }; - plasma-pa = { - version = "5.8.5"; - src = fetchurl { - url = "${mirror}/stable/plasma/5.8.5/plasma-pa-5.8.5.tar.xz"; - sha256 = "0vg1dyxfg8rxzyh0xnk41c95zp8rdbx1w462llrwchzp29p3xg1b"; - name = "plasma-pa-5.8.5.tar.xz"; - }; - }; - plasma-sdk = { - version = "5.8.5"; - src = fetchurl { - url = "${mirror}/stable/plasma/5.8.5/plasma-sdk-5.8.5.tar.xz"; - sha256 = "13lyb5x4a8aq4fykvdv1137yvc4s4q31fdxhxppza1wkw8lvbvpd"; - name = "plasma-sdk-5.8.5.tar.xz"; - }; - }; - plasma-tests = { - version = "5.8.5"; - src = fetchurl { - url = "${mirror}/stable/plasma/5.8.5/plasma-tests-5.8.5.tar.xz"; - sha256 = "0wgqyqlqygi3z0cccpfrpi259jp4yhh2g4x3mqcxisv58mbjrj1b"; - name = "plasma-tests-5.8.5.tar.xz"; - }; - }; - plasma-workspace = { - version = "5.8.5"; - src = fetchurl { - url = "${mirror}/stable/plasma/5.8.5/plasma-workspace-5.8.5.tar.xz"; - sha256 = "18bf5wmyb198jnbpivjjwsk65sksrvzlvykx3mr3wvj30mr0f9bd"; - name = "plasma-workspace-5.8.5.tar.xz"; - }; - }; - plasma-workspace-wallpapers = { - version = "5.8.5"; - src = fetchurl { - url = "${mirror}/stable/plasma/5.8.5/plasma-workspace-wallpapers-5.8.5.tar.xz"; - sha256 = "116s9qw888lbgxc9ggxf7fa99vggixr2ig1715xb5zmqm14yznyz"; - name = "plasma-workspace-wallpapers-5.8.5.tar.xz"; - }; - }; - polkit-kde-agent = { - version = "1-5.8.5"; - src = fetchurl { - url = "${mirror}/stable/plasma/5.8.5/polkit-kde-agent-1-5.8.5.tar.xz"; - sha256 = "1dwk848wljcd9bi0h58h0ljnjlz1qq50rd7i38f3cb848iipisw7"; - name = "polkit-kde-agent-1-5.8.5.tar.xz"; - }; - }; - powerdevil = { - version = "5.8.5"; - src = fetchurl { - url = "${mirror}/stable/plasma/5.8.5/powerdevil-5.8.5.tar.xz"; - sha256 = "0lj7jcaqfsipiwi7x4q684p4pfsqzflvddr7hrhirfl1p62bc704"; - name = "powerdevil-5.8.5.tar.xz"; - }; - }; - sddm-kcm = { - version = "5.8.5"; - src = fetchurl { - url = "${mirror}/stable/plasma/5.8.5/sddm-kcm-5.8.5.tar.xz"; - sha256 = "0dcvk3f3cqq4z5hc63ccpxyl3kknjvd8jsnx7r2hfrwsw0y90fqc"; - name = "sddm-kcm-5.8.5.tar.xz"; - }; - }; - systemsettings = { - version = "5.8.5"; - src = fetchurl { - url = "${mirror}/stable/plasma/5.8.5/systemsettings-5.8.5.tar.xz"; - sha256 = "0pkwmgbjglbyc8i22hivh5gnaj742df3ff3f998k66k81mfjkwga"; - name = "systemsettings-5.8.5.tar.xz"; - }; - }; - user-manager = { - version = "5.8.5"; - src = fetchurl { - url = "${mirror}/stable/plasma/5.8.5/user-manager-5.8.5.tar.xz"; - sha256 = "1ck8x860q3aqgbbgiwfdhs0i0bs2nhqqva19kl9x1b015p64gl5z"; - name = "user-manager-5.8.5.tar.xz"; - }; - }; -} diff --git a/pkgs/desktops/lumina/default.nix b/pkgs/desktops/lumina/default.nix index f593bd144374..2c80f5157b66 100644 --- a/pkgs/desktops/lumina/default.nix +++ b/pkgs/desktops/lumina/default.nix @@ -1,5 +1,5 @@ -{ stdenv, fetchFromGitHub, fluxbox, xscreensaver, desktop_file_utils, - numlockx, xorg, qt5, kde5 +{ stdenv, fetchFromGitHub, fluxbox, xscreensaver, desktop_file_utils, numlockx, + xorg, qtbase, qtsvg, qtmultimedia, qtx11extras, qmakeHook, qttools, oxygen-icons5 }: stdenv.mkDerivation rec { @@ -14,19 +14,19 @@ stdenv.mkDerivation rec { }; nativeBuildInputs = [ - qt5.qmakeHook - qt5.qttools + qmakeHook + qttools ]; buildInputs = [ xorg.libxcb xorg.xcbutilwm xorg.xcbutilimage - qt5.qtbase - qt5.qtsvg - qt5.qtmultimedia - qt5.qtx11extras - kde5.oxygen-icons5 + qtbase + qtsvg + qtmultimedia + qtx11extras + oxygen-icons5 fluxbox xscreensaver desktop_file_utils diff --git a/pkgs/desktops/lxqt/base/liblxqt/default.nix b/pkgs/desktops/lxqt/base/liblxqt/default.nix index 2d4faee5cf33..9363dba86699 100644 --- a/pkgs/desktops/lxqt/base/liblxqt/default.nix +++ b/pkgs/desktops/lxqt/base/liblxqt/default.nix @@ -1,4 +1,5 @@ -{ stdenv, fetchFromGitHub, cmake, qt5, kde5, lxqt, xorg }: +{ stdenv, fetchFromGitHub, cmake, lxqt-build-tools, + qtx11extras, qttools, qtsvg, libqtxdg, kwindowsystem, xorg }: stdenv.mkDerivation rec { name = "${pname}-${version}"; @@ -14,15 +15,15 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ cmake - lxqt.lxqt-build-tools + lxqt-build-tools ]; buildInputs = [ - qt5.qtx11extras - qt5.qttools - qt5.qtsvg - kde5.kwindowsystem - lxqt.libqtxdg + qtx11extras + qttools + qtsvg + kwindowsystem + libqtxdg xorg.libXScrnSaver ]; diff --git a/pkgs/desktops/lxqt/core/libfm-qt/default.nix b/pkgs/desktops/lxqt/core/libfm-qt/default.nix index 4c7ecbc1804d..78c0a926b9c8 100644 --- a/pkgs/desktops/lxqt/core/libfm-qt/default.nix +++ b/pkgs/desktops/lxqt/core/libfm-qt/default.nix @@ -1,5 +1,8 @@ -{ stdenv, fetchFromGitHub, cmake, pkgconfig, qt5, kde5, lxqt, xorg, -libfm, menu-cache }: +{ + stdenv, fetchFromGitHub, cmake, pkgconfig, lxqt-build-tools, + xorg, libfm, menu-cache, + qtx11extras, qttools +}: stdenv.mkDerivation rec { name = "${pname}-${version}"; @@ -16,18 +19,18 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ cmake pkgconfig - lxqt.lxqt-build-tools + lxqt-build-tools ]; buildInputs = [ - qt5.qtx11extras - qt5.qttools + qtx11extras + qttools libfm menu-cache ]; cmakeFlags = [ "-DPULL_TRANSLATIONS=NO" ]; - + meta = with stdenv.lib; { description = "Core library of PCManFM-Qt (Qt binding for libfm)"; homepage = https://github.com/lxde/libfm-qt; diff --git a/pkgs/desktops/lxqt/core/lxqt-about/default.nix b/pkgs/desktops/lxqt/core/lxqt-about/default.nix index 34491d0414bc..ac81391af1d9 100644 --- a/pkgs/desktops/lxqt/core/lxqt-about/default.nix +++ b/pkgs/desktops/lxqt/core/lxqt-about/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchFromGitHub, cmake, qt5, kde5, lxqt }: +{ stdenv, fetchFromGitHub, cmake, lxqt-build-tools, standardPatch, qtx11extras, qttools, qtsvg, kwindowsystem, liblxqt, libqtxdg }: stdenv.mkDerivation rec { name = "${pname}-${version}"; @@ -14,21 +14,21 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ cmake - lxqt.lxqt-build-tools + lxqt-build-tools ]; buildInputs = [ - qt5.qtx11extras - qt5.qttools - qt5.qtsvg - kde5.kwindowsystem - lxqt.liblxqt - lxqt.libqtxdg + qtx11extras + qttools + qtsvg + kwindowsystem + liblxqt + libqtxdg ]; cmakeFlags = [ "-DPULL_TRANSLATIONS=NO" ]; - postPatch = lxqt.standardPatch; + postPatch = standardPatch; meta = with stdenv.lib; { description = "Dialogue window providing information about LXQt and the system it's running on"; diff --git a/pkgs/desktops/lxqt/core/lxqt-admin/default.nix b/pkgs/desktops/lxqt/core/lxqt-admin/default.nix index 2e6ae9858ad3..23b142f352f0 100644 --- a/pkgs/desktops/lxqt/core/lxqt-admin/default.nix +++ b/pkgs/desktops/lxqt/core/lxqt-admin/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchFromGitHub, cmake, qt5, kde5, lxqt, polkit }: +{ stdenv, fetchFromGitHub, cmake, lxqt-build-tools, standardPatch, qtx11extras, qttools, qtsvg, kwindowsystem, liblxqt, libqtxdg, polkit }: stdenv.mkDerivation rec { name = "${pname}-${version}"; @@ -14,22 +14,22 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ cmake - lxqt.lxqt-build-tools + lxqt-build-tools ]; buildInputs = [ - qt5.qtx11extras - qt5.qttools - qt5.qtsvg - kde5.kwindowsystem - lxqt.liblxqt - lxqt.libqtxdg + qtx11extras + qttools + qtsvg + kwindowsystem + liblxqt + libqtxdg polkit ]; cmakeFlags = [ "-DPULL_TRANSLATIONS=NO" ]; - postPatch = lxqt.standardPatch; + postPatch = standardPatch; meta = with stdenv.lib; { description = "LXQt system administration tool"; diff --git a/pkgs/desktops/lxqt/core/lxqt-config/default.nix b/pkgs/desktops/lxqt/core/lxqt-config/default.nix index a16fcd21f68f..7b38d2eec6fd 100644 --- a/pkgs/desktops/lxqt/core/lxqt-config/default.nix +++ b/pkgs/desktops/lxqt/core/lxqt-config/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchFromGitHub, cmake, pkgconfig, qt5, kde5, lxqt, xorg }: +{ stdenv, fetchFromGitHub, cmake, pkgconfig, lxqt-build-tools, standardPatch, qtbase, qtx11extras, qttools, qtsvg, kwindowsystem, libkscreen, liblxqt, libqtxdg, libpthreadstubs, xorg }: stdenv.mkDerivation rec { name = "${pname}-${version}"; @@ -15,18 +15,18 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ cmake pkgconfig - lxqt.lxqt-build-tools + lxqt-build-tools ]; buildInputs = [ - qt5.qtbase - qt5.qtx11extras - qt5.qttools - qt5.qtsvg - kde5.kwindowsystem - kde5.libkscreen - lxqt.liblxqt - lxqt.libqtxdg + qtbase + qtx11extras + qttools + qtsvg + kwindowsystem + libkscreen + liblxqt + libqtxdg xorg.libpthreadstubs xorg.libXdmcp xorg.libXScrnSaver @@ -36,7 +36,7 @@ stdenv.mkDerivation rec { cmakeFlags = [ "-DPULL_TRANSLATIONS=NO" ]; - postPatch = lxqt.standardPatch; + postPatch = standardPatch; meta = with stdenv.lib; { description = "Tools to configure LXQt and the underlying operating system"; diff --git a/pkgs/desktops/lxqt/core/lxqt-globalkeys/default.nix b/pkgs/desktops/lxqt/core/lxqt-globalkeys/default.nix index a23bff6e8d1d..73248da1ef80 100644 --- a/pkgs/desktops/lxqt/core/lxqt-globalkeys/default.nix +++ b/pkgs/desktops/lxqt/core/lxqt-globalkeys/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchFromGitHub, cmake, qt5, kde5, lxqt }: +{ stdenv, fetchFromGitHub, cmake, lxqt-build-tools, standardPatch, qtbase, qttools, qtx11extras, qtsvg, kwindowsystem, liblxqt, libqtxdg }: stdenv.mkDerivation rec { name = "${pname}-${version}"; @@ -14,22 +14,22 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ cmake - lxqt.lxqt-build-tools + lxqt-build-tools ]; buildInputs = [ - qt5.qtbase - qt5.qttools - qt5.qtx11extras - qt5.qtsvg - kde5.kwindowsystem - lxqt.liblxqt - lxqt.libqtxdg + qtbase + qttools + qtx11extras + qtsvg + kwindowsystem + liblxqt + libqtxdg ]; cmakeFlags = [ "-DPULL_TRANSLATIONS=NO" ]; - postPatch = lxqt.standardPatch; + postPatch = standardPatch; meta = with stdenv.lib; { description = "Daemon used to register global keyboard shortcuts"; diff --git a/pkgs/desktops/lxqt/core/lxqt-notificationd/default.nix b/pkgs/desktops/lxqt/core/lxqt-notificationd/default.nix index 3646a461c830..cb10df5a1b72 100644 --- a/pkgs/desktops/lxqt/core/lxqt-notificationd/default.nix +++ b/pkgs/desktops/lxqt/core/lxqt-notificationd/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchFromGitHub, cmake, qt5, kde5, lxqt }: +{ stdenv, fetchFromGitHub, cmake, lxqt-build-tools, qtbase, qttools, qtsvg, kwindowsystem, liblxqt, libqtxdg, lxqt-common }: stdenv.mkDerivation rec { name = "${pname}-${version}"; @@ -14,17 +14,17 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ cmake - lxqt.lxqt-build-tools + lxqt-build-tools ]; buildInputs = [ - qt5.qtbase - qt5.qttools - qt5.qtsvg - kde5.kwindowsystem - lxqt.liblxqt - lxqt.libqtxdg - lxqt.lxqt-common + qtbase + qttools + qtsvg + kwindowsystem + liblxqt + libqtxdg + lxqt-common ]; cmakeFlags = [ "-DPULL_TRANSLATIONS=NO" ]; diff --git a/pkgs/desktops/lxqt/core/lxqt-openssh-askpass/default.nix b/pkgs/desktops/lxqt/core/lxqt-openssh-askpass/default.nix index 9190718fde4f..a52ce02cd14b 100644 --- a/pkgs/desktops/lxqt/core/lxqt-openssh-askpass/default.nix +++ b/pkgs/desktops/lxqt/core/lxqt-openssh-askpass/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchFromGitHub, cmake, qt5, kde5, lxqt }: +{ stdenv, fetchFromGitHub, cmake, lxqt-build-tools, qtbase, qttools, qtsvg, qtx11extras, kwindowsystem, liblxqt, libqtxdg }: stdenv.mkDerivation rec { name = "${pname}-${version}"; @@ -14,17 +14,17 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ cmake - lxqt.lxqt-build-tools + lxqt-build-tools ]; buildInputs = [ - qt5.qtbase - qt5.qttools - qt5.qtx11extras - qt5.qtsvg - kde5.kwindowsystem - lxqt.liblxqt - lxqt.libqtxdg + qtbase + qttools + qtx11extras + qtsvg + kwindowsystem + liblxqt + libqtxdg ]; cmakeFlags = [ "-DPULL_TRANSLATIONS=NO" ]; diff --git a/pkgs/desktops/lxqt/core/lxqt-panel/default.nix b/pkgs/desktops/lxqt/core/lxqt-panel/default.nix index 0c899c67dad5..dfbd39acaa35 100644 --- a/pkgs/desktops/lxqt/core/lxqt-panel/default.nix +++ b/pkgs/desktops/lxqt/core/lxqt-panel/default.nix @@ -1,6 +1,11 @@ -{ stdenv, fetchFromGitHub, cmake, pkgconfig, qt5, kde5, lxqt, xorg, -libstatgrab, lm_sensors, libpulseaudio, alsaLib, menu-cache, -lxmenu-data }: +{ + stdenv, fetchFromGitHub, standardPatch, + cmake, pkgconfig, lxqt-build-tools, + qtbase, qttools, qtx11extras, qtsvg, libdbusmenu, kwindowsystem, solid, + kguiaddons, liblxqt, libqtxdg, lxqt-common, lxqt-globalkeys, libsysstat, + xorg, libstatgrab, lm_sensors, libpulseaudio, alsaLib, menu-cache, + lxmenu-data +}: stdenv.mkDerivation rec { name = "${pname}-${version}"; @@ -17,23 +22,23 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ cmake pkgconfig - lxqt.lxqt-build-tools + lxqt-build-tools ]; buildInputs = [ - qt5.qtbase - qt5.qttools - qt5.qtx11extras - qt5.qtsvg - qt5.libdbusmenu - kde5.kwindowsystem - kde5.solid - kde5.kguiaddons - lxqt.liblxqt - lxqt.libqtxdg - lxqt.lxqt-common - lxqt.lxqt-globalkeys - lxqt.libsysstat + qtbase + qttools + qtx11extras + qtsvg + libdbusmenu + kwindowsystem + solid + kguiaddons + liblxqt + libqtxdg + lxqt-common + lxqt-globalkeys + libsysstat xorg.libpthreadstubs xorg.libXdmcp libstatgrab @@ -46,7 +51,7 @@ stdenv.mkDerivation rec { cmakeFlags = [ "-DPULL_TRANSLATIONS=NO" ]; - postPatch = lxqt.standardPatch; + postPatch = standardPatch; meta = with stdenv.lib; { description = "The LXQt desktop panel"; diff --git a/pkgs/desktops/lxqt/core/lxqt-policykit/default.nix b/pkgs/desktops/lxqt/core/lxqt-policykit/default.nix index f4351a9598d7..bdcc0a4d606e 100644 --- a/pkgs/desktops/lxqt/core/lxqt-policykit/default.nix +++ b/pkgs/desktops/lxqt/core/lxqt-policykit/default.nix @@ -1,4 +1,8 @@ -{ stdenv, fetchFromGitHub, cmake, pkgconfig, qt5, kde5, lxqt }: +{ + stdenv, fetchFromGitHub, cmake, pkgconfig, lxqt-build-tools, + qtbase, qttools, qtx11extras, qtsvg, polkit-qt, kwindowsystem, liblxqt, + libqtxdg, +}: stdenv.mkDerivation rec { name = "${pname}-${version}"; @@ -15,18 +19,18 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ cmake pkgconfig - lxqt.lxqt-build-tools + lxqt-build-tools ]; buildInputs = [ - qt5.qtbase - qt5.qttools - qt5.qtx11extras - qt5.qtsvg - qt5.polkit-qt - kde5.kwindowsystem - lxqt.liblxqt - lxqt.libqtxdg + qtbase + qttools + qtx11extras + qtsvg + polkit-qt + kwindowsystem + liblxqt + libqtxdg ]; cmakeFlags = [ "-DPULL_TRANSLATIONS=NO" ]; diff --git a/pkgs/desktops/lxqt/core/lxqt-powermanagement/default.nix b/pkgs/desktops/lxqt/core/lxqt-powermanagement/default.nix index b7321c646686..d3793a9d9286 100644 --- a/pkgs/desktops/lxqt/core/lxqt-powermanagement/default.nix +++ b/pkgs/desktops/lxqt/core/lxqt-powermanagement/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchFromGitHub, cmake, qt5, kde5, lxqt }: +{ stdenv, fetchFromGitHub, cmake, lxqt-build-tools, qtbase, qttools, qtx11extras, qtsvg, kwindowsystem, solid, kidletime, liblxqt, libqtxdg }: stdenv.mkDerivation rec { name = "${pname}-${version}"; @@ -14,19 +14,19 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ cmake - lxqt.lxqt-build-tools + lxqt-build-tools ]; buildInputs = [ - qt5.qtbase - qt5.qttools - qt5.qtx11extras - qt5.qtsvg - kde5.kwindowsystem - kde5.solid - kde5.kidletime - lxqt.liblxqt - lxqt.libqtxdg + qtbase + qttools + qtx11extras + qtsvg + kwindowsystem + solid + kidletime + liblxqt + libqtxdg ]; cmakeFlags = [ "-DPULL_TRANSLATIONS=NO" ]; diff --git a/pkgs/desktops/lxqt/core/lxqt-qtplugin/default.nix b/pkgs/desktops/lxqt/core/lxqt-qtplugin/default.nix index 49fa7c616335..d5b8987bbb82 100644 --- a/pkgs/desktops/lxqt/core/lxqt-qtplugin/default.nix +++ b/pkgs/desktops/lxqt/core/lxqt-qtplugin/default.nix @@ -1,4 +1,8 @@ -{ stdenv, fetchFromGitHub, cmake, qt5, lxqt }: +{ + stdenv, fetchFromGitHub, standardPatch, + cmake, lxqt-build-tools, + qtbase, qtx11extras, qttools, qtsvg, libdbusmenu, libqtxdg, +}: stdenv.mkDerivation rec { name = "${pname}-${version}"; @@ -14,21 +18,21 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ cmake - lxqt.lxqt-build-tools + lxqt-build-tools ]; buildInputs = [ - qt5.qtbase - qt5.qtx11extras - qt5.qttools - qt5.qtsvg - qt5.libdbusmenu - lxqt.libqtxdg + qtbase + qtx11extras + qttools + qtsvg + libdbusmenu + libqtxdg ]; cmakeFlags = [ "-DPULL_TRANSLATIONS=NO" ]; - postPatch = lxqt.standardPatch; + postPatch = standardPatch; meta = with stdenv.lib; { description = "LXQt Qt platform integration plugin"; diff --git a/pkgs/desktops/lxqt/core/lxqt-runner/default.nix b/pkgs/desktops/lxqt/core/lxqt-runner/default.nix index f420e9e410ae..550025f8e87b 100644 --- a/pkgs/desktops/lxqt/core/lxqt-runner/default.nix +++ b/pkgs/desktops/lxqt/core/lxqt-runner/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchFromGitHub, cmake, pkgconfig, qt5, kde5, lxqt, +{ stdenv, fetchFromGitHub, cmake, pkgconfig, lxqt-build-tools, qtbase, qttools, qtsvg, kwindowsystem, liblxqt, libqtxdg, lxqt-common, lxqt-globalkeys, menu-cache, muparser }: stdenv.mkDerivation rec { @@ -16,18 +16,18 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ cmake pkgconfig - lxqt.lxqt-build-tools + lxqt-build-tools ]; buildInputs = [ - qt5.qtbase - qt5.qttools - qt5.qtsvg - kde5.kwindowsystem - lxqt.liblxqt - lxqt.libqtxdg - lxqt.lxqt-common - lxqt.lxqt-globalkeys + qtbase + qttools + qtsvg + kwindowsystem + liblxqt + libqtxdg + lxqt-common + lxqt-globalkeys menu-cache muparser ]; diff --git a/pkgs/desktops/lxqt/core/lxqt-session/default.nix b/pkgs/desktops/lxqt/core/lxqt-session/default.nix index 1dfdd303a720..35879af28e88 100644 --- a/pkgs/desktops/lxqt/core/lxqt-session/default.nix +++ b/pkgs/desktops/lxqt/core/lxqt-session/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchFromGitHub, cmake, pkgconfig, qt5, kde5, lxqt, xorg, xdg-user-dirs }: +{ stdenv, fetchFromGitHub, cmake, pkgconfig, lxqt-build-tools, qtbase, qttools, qtsvg, kwindowsystem, liblxqt, libqtxdg, lxqt-common, xorg, xdg-user-dirs }: stdenv.mkDerivation rec { name = "${pname}-${version}"; @@ -15,17 +15,17 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ cmake pkgconfig - lxqt.lxqt-build-tools + lxqt-build-tools ]; buildInputs = [ - qt5.qtbase - qt5.qttools - qt5.qtsvg - kde5.kwindowsystem - lxqt.liblxqt - lxqt.libqtxdg - lxqt.lxqt-common + qtbase + qttools + qtsvg + kwindowsystem + liblxqt + libqtxdg + lxqt-common xorg.libpthreadstubs xorg.libXdmcp xdg-user-dirs diff --git a/pkgs/desktops/lxqt/core/lxqt-sudo/default.nix b/pkgs/desktops/lxqt/core/lxqt-sudo/default.nix index 83b16587523d..1e235af3c900 100644 --- a/pkgs/desktops/lxqt/core/lxqt-sudo/default.nix +++ b/pkgs/desktops/lxqt/core/lxqt-sudo/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchFromGitHub, cmake, qt5, kde5, lxqt, sudo }: +{ stdenv, fetchFromGitHub, cmake, lxqt-build-tools, qtbase, qttools, qtx11extras, qtsvg, kwindowsystem, liblxqt, libqtxdg, sudo }: stdenv.mkDerivation rec { name = "${pname}-${version}"; @@ -14,17 +14,17 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ cmake - lxqt.lxqt-build-tools + lxqt-build-tools ]; buildInputs = [ - qt5.qtbase - qt5.qttools - qt5.qtx11extras - qt5.qtsvg - kde5.kwindowsystem - lxqt.liblxqt - lxqt.libqtxdg + qtbase + qttools + qtx11extras + qtsvg + kwindowsystem + liblxqt + libqtxdg sudo ]; diff --git a/pkgs/desktops/lxqt/default.nix b/pkgs/desktops/lxqt/default.nix index 3cd8fdf22123..71eff8a1b0fa 100644 --- a/pkgs/desktops/lxqt/default.nix +++ b/pkgs/desktops/lxqt/default.nix @@ -1,13 +1,11 @@ -{ pkgs, newScope, fetchFromGitHub }: +{ pkgs, makeScope, libsForQt5, fetchFromGitHub }: let - callPackage = newScope self; - - self = rec { + packages = self: with self; { # For compiling information, see: # - https://github.com/lxde/lxqt/wiki/Building-from-source - + standardPatch = '' for file in $(find . -name CMakeLists.txt); do substituteInPlace $file \ @@ -57,7 +55,7 @@ let ### OPTIONAL qterminal = callPackage ./optional/qterminal { }; - compton-conf = callPackage ./optional/compton-conf { }; + compton-conf = pkgs.qt5.callPackage ./optional/compton-conf { }; obconf-qt = callPackage ./optional/obconf-qt { }; lximage-qt = callPackage ./optional/lximage-qt { }; qps = callPackage ./optional/qps { }; @@ -66,14 +64,14 @@ let preRequisitePackages = [ pkgs.gvfs # virtual file systems support for PCManFM-QT - pkgs.kde5.kwindowsystem # provides some QT5 plugins needed by lxqt-panel - pkgs.kde5.libkscreen # provides plugins for screen management software + pkgs.libsForQt5.kwindowsystem # provides some QT5 plugins needed by lxqt-panel + pkgs.libsForQt5.libkscreen # provides plugins for screen management software pkgs.libfm pkgs.libfm-extra pkgs.lxmenu-data pkgs.menu-cache pkgs.openbox # default window manager - pkgs.qt5.qtsvg # provides QT5 plugins for svg icons + qt5.qtsvg # provides QT5 plugins for svg icons ]; corePackages = [ @@ -120,7 +118,7 @@ let qlipper ### Default icon theme - pkgs.kde5.oxygen-icons5 + pkgs.oxygen-icons5 ### Screen saver pkgs.xscreensaver @@ -128,4 +126,4 @@ let }; -in self +in makeScope libsForQt5.newScope packages diff --git a/pkgs/desktops/lxqt/optional/compton-conf/default.nix b/pkgs/desktops/lxqt/optional/compton-conf/default.nix index c25ee10bd255..6e1ea1288539 100644 --- a/pkgs/desktops/lxqt/optional/compton-conf/default.nix +++ b/pkgs/desktops/lxqt/optional/compton-conf/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchFromGitHub, cmake, pkgconfig, qt5, kde5, lxqt, libconfig }: +{ stdenv, fetchFromGitHub, cmake, pkgconfig, qtbase, qttools, lxqt, libconfig }: stdenv.mkDerivation rec { name = "${pname}-${version}"; @@ -19,8 +19,8 @@ stdenv.mkDerivation rec { ]; buildInputs = [ - qt5.qtbase - qt5.qttools + qtbase + qttools libconfig ]; diff --git a/pkgs/desktops/lxqt/optional/screengrab/default.nix b/pkgs/desktops/lxqt/optional/screengrab/default.nix index b3524d36777c..e8cc7c30fa15 100644 --- a/pkgs/desktops/lxqt/optional/screengrab/default.nix +++ b/pkgs/desktops/lxqt/optional/screengrab/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchFromGitHub, cmake, pkgconfig, qt5, kde5, lxqt, xorg }: +{ stdenv, fetchFromGitHub, cmake, pkgconfig, qtbase, qttools, qtx11extras, qtsvg, kwindowsystem, libqtxdg, xorg }: stdenv.mkDerivation rec { name = "screengrab-unstable-2017-02-18"; @@ -13,12 +13,12 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ cmake pkgconfig ]; buildInputs = [ - qt5.qtbase - qt5.qttools - qt5.qtx11extras - qt5.qtsvg - kde5.kwindowsystem - lxqt.libqtxdg + qtbase + qttools + qtx11extras + qtsvg + kwindowsystem + libqtxdg xorg.libpthreadstubs xorg.libXdmcp ]; diff --git a/pkgs/desktops/kde-5/plasma/bluedevil.nix b/pkgs/desktops/plasma-5/bluedevil.nix index 1deef241a62f..d0e784998132 100644 --- a/pkgs/desktops/kde-5/plasma/bluedevil.nix +++ b/pkgs/desktops/plasma-5/bluedevil.nix @@ -1,12 +1,12 @@ { - plasmaPackage, ecm, shared_mime_info, + plasmaPackage, extra-cmake-modules, shared_mime_info, bluez-qt, kcoreaddons, kdbusaddons, kded, ki18n, kiconthemes, kio, knotifications, kwidgetsaddons, kwindowsystem, plasma-framework, qtdeclarative }: plasmaPackage { name = "bluedevil"; - nativeBuildInputs = [ ecm shared_mime_info ]; + nativeBuildInputs = [ extra-cmake-modules shared_mime_info ]; propagatedBuildInputs = [ bluez-qt ki18n kio kwindowsystem plasma-framework qtdeclarative kcoreaddons kdbusaddons kded kiconthemes knotifications kwidgetsaddons diff --git a/pkgs/desktops/kde-5/plasma/breeze-grub.nix b/pkgs/desktops/plasma-5/breeze-grub.nix index da0fb6f73ad7..da0fb6f73ad7 100644 --- a/pkgs/desktops/kde-5/plasma/breeze-grub.nix +++ b/pkgs/desktops/plasma-5/breeze-grub.nix diff --git a/pkgs/desktops/kde-5/plasma/breeze-gtk.nix b/pkgs/desktops/plasma-5/breeze-gtk.nix index 57de2fa2d474..4048d98431db 100644 --- a/pkgs/desktops/kde-5/plasma/breeze-gtk.nix +++ b/pkgs/desktops/plasma-5/breeze-gtk.nix @@ -1,9 +1,11 @@ { plasmaPackage -, ecm +, extra-cmake-modules +, qtbase }: plasmaPackage { name = "breeze-gtk"; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; cmakeFlags = [ "-DWITH_GTK3_VERSION=3.20" ]; + buildInputs = [ qtbase ]; } diff --git a/pkgs/desktops/kde-5/plasma/breeze-plymouth/default.nix b/pkgs/desktops/plasma-5/breeze-plymouth/default.nix index 0de1ca1f6802..dfbdf48165aa 100644 --- a/pkgs/desktops/kde-5/plasma/breeze-plymouth/default.nix +++ b/pkgs/desktops/plasma-5/breeze-plymouth/default.nix @@ -1,12 +1,12 @@ { plasmaPackage, lib, copyPathsToStore, - ecm, + extra-cmake-modules, plymouth }: plasmaPackage { name = "breeze-plymouth"; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; buildInputs = [ plymouth ]; outputs = [ "out" ]; patches = copyPathsToStore (lib.readPathsFromFile ./. ./series); diff --git a/pkgs/desktops/kde-5/plasma/breeze-plymouth/install-paths.patch b/pkgs/desktops/plasma-5/breeze-plymouth/install-paths.patch index 5d5856d122dd..5d5856d122dd 100644 --- a/pkgs/desktops/kde-5/plasma/breeze-plymouth/install-paths.patch +++ b/pkgs/desktops/plasma-5/breeze-plymouth/install-paths.patch diff --git a/pkgs/desktops/kde-5/plasma/breeze-plymouth/series b/pkgs/desktops/plasma-5/breeze-plymouth/series index 8920e7ca5189..8920e7ca5189 100644 --- a/pkgs/desktops/kde-5/plasma/breeze-plymouth/series +++ b/pkgs/desktops/plasma-5/breeze-plymouth/series diff --git a/pkgs/desktops/plasma-5/breeze-qt4.nix b/pkgs/desktops/plasma-5/breeze-qt4.nix new file mode 100644 index 000000000000..adcc6110c4d7 --- /dev/null +++ b/pkgs/desktops/plasma-5/breeze-qt4.nix @@ -0,0 +1,16 @@ +{ + plasmaPackage, lib, + automoc4, cmake, perl, pkgconfig, + kdelibs4, qt4, xproto +}: + +plasmaPackage { + name = "breeze-qt4"; + sname = "breeze"; + buildInputs = [ kdelibs4 qt4 xproto ]; + nativeBuildInputs = [ automoc4 cmake perl pkgconfig ]; + cmakeFlags = [ + "-DUSE_KDE4=ON" + "-DQT_QMAKE_EXECUTABLE=${qt4}/bin/qmake" + ]; +} diff --git a/pkgs/desktops/kde-5/plasma/breeze-qt5.nix b/pkgs/desktops/plasma-5/breeze-qt5.nix index ea2776a13c59..a1b64a4656cb 100644 --- a/pkgs/desktops/kde-5/plasma/breeze-qt5.nix +++ b/pkgs/desktops/plasma-5/breeze-qt5.nix @@ -1,6 +1,6 @@ { plasmaPackage, - ecm, + extra-cmake-modules, frameworkintegration, kcmutils, kconfigwidgets, kcoreaddons, kdecoration, kguiaddons, ki18n, kwayland, kwindowsystem, plasma-framework, qtx11extras }: @@ -8,7 +8,7 @@ plasmaPackage { name = "breeze-qt5"; sname = "breeze"; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; propagatedBuildInputs = [ frameworkintegration kcmutils kconfigwidgets kcoreaddons kdecoration kguiaddons ki18n kwayland kwindowsystem plasma-framework qtx11extras diff --git a/pkgs/desktops/plasma-5/build-support/package.nix b/pkgs/desktops/plasma-5/build-support/package.nix new file mode 100644 index 000000000000..1e9ba016c471 --- /dev/null +++ b/pkgs/desktops/plasma-5/build-support/package.nix @@ -0,0 +1,27 @@ +{ kdeDerivation, lib, fetchurl }: + +let + mirror = "mirror://kde"; + srcs = import ../srcs.nix { inherit fetchurl mirror; }; +in + +args: + +let + inherit (args) name; + sname = args.sname or name; + inherit (srcs."${sname}") src version; +in +kdeDerivation (args // { + name = "${name}-${version}"; + inherit src; + + meta = { + license = with lib.licenses; [ + lgpl21Plus lgpl3Plus bsd2 mit gpl2Plus gpl3Plus fdl12 + ]; + platforms = lib.platforms.linux; + maintainers = with lib.maintainers; [ ttuegel ]; + homepage = "http://www.kde.org"; + } // (args.meta or {}); +}) diff --git a/pkgs/desktops/plasma-5/default.nix b/pkgs/desktops/plasma-5/default.nix new file mode 100644 index 000000000000..0cb25a315d6e --- /dev/null +++ b/pkgs/desktops/plasma-5/default.nix @@ -0,0 +1,81 @@ +/* + +# New packages + +READ THIS FIRST + +This module is for official packages in KDE Plasma 5. All available packages are +listed in `./srcs.nix`, although a few are not yet packaged in Nixpkgs (see +below). + +IF YOUR PACKAGE IS NOT LISTED IN `./srcs.nix`, IT DOES NOT GO HERE. + +Many of the packages released upstream are not yet built in Nixpkgs due to lack +of demand. To add a Nixpkgs build for an upstream package, copy one of the +existing packages here and modify it as necessary. + +# Updates + +1. Update the URL in `./fetch.sh`. +2. Run `./maintainers/scripts/fetch-kde-qt.sh pkgs/desktops/plasma-5` + from the top of the Nixpkgs tree. +3. Use `nox-review wip` to check that everything builds. +4. Commit the changes and open a pull request. + +*/ + +{ + libsForQt5, kdeDerivation, lib, fetchurl, + gconf, + debug ? false, +}: + +let + packages = self: with self; + let + callPackage = self.newScope { + plasmaPackage = import ./build-support/package.nix { + inherit kdeDerivation lib fetchurl; + }; + }; + in { + bluedevil = callPackage ./bluedevil.nix {}; + breeze-gtk = callPackage ./breeze-gtk.nix {}; + breeze-qt4 = callPackage ./breeze-qt4.nix {}; + breeze-qt5 = callPackage ./breeze-qt5.nix {}; + breeze-grub = callPackage ./breeze-grub.nix {}; + breeze-plymouth = callPackage ./breeze-plymouth {}; + kactivitymanagerd = callPackage ./kactivitymanagerd.nix {}; + kde-cli-tools = callPackage ./kde-cli-tools.nix {}; + kde-gtk-config = callPackage ./kde-gtk-config {}; + kdecoration = callPackage ./kdecoration.nix {}; + kdeplasma-addons = callPackage ./kdeplasma-addons.nix {}; + kgamma5 = callPackage ./kgamma5.nix {}; + khotkeys = callPackage ./khotkeys.nix {}; + kinfocenter = callPackage ./kinfocenter.nix {}; + kmenuedit = callPackage ./kmenuedit.nix {}; + kscreen = callPackage ./kscreen.nix {}; + kscreenlocker = callPackage ./kscreenlocker.nix {}; + ksshaskpass = callPackage ./ksshaskpass.nix {}; + ksysguard = callPackage ./ksysguard.nix {}; + kwallet-pam = callPackage ./kwallet-pam.nix {}; + kwayland-integration = callPackage ./kwayland-integration.nix {}; + kwin = callPackage ./kwin {}; + kwrited = callPackage ./kwrited.nix {}; + libkscreen = callPackage ./libkscreen.nix {}; + libksysguard = callPackage ./libksysguard {}; + milou = callPackage ./milou.nix {}; + oxygen = callPackage ./oxygen.nix {}; + plasma-desktop = callPackage ./plasma-desktop {}; + plasma-integration = callPackage ./plasma-integration.nix {}; + plasma-nm = callPackage ./plasma-nm {}; + plasma-pa = callPackage ./plasma-pa.nix { inherit gconf; }; + plasma-workspace = callPackage ./plasma-workspace {}; + plasma-workspace-wallpapers = callPackage ./plasma-workspace-wallpapers.nix {}; + polkit-kde-agent = callPackage ./polkit-kde-agent.nix {}; + powerdevil = callPackage ./powerdevil.nix {}; + startkde = callPackage ./startkde {}; + systemsettings = callPackage ./systemsettings.nix {}; + }; +in +lib.makeScope libsForQt5.newScope packages diff --git a/pkgs/desktops/plasma-5/fetch.sh b/pkgs/desktops/plasma-5/fetch.sh new file mode 100644 index 000000000000..7d127211956b --- /dev/null +++ b/pkgs/desktops/plasma-5/fetch.sh @@ -0,0 +1 @@ +WGET_ARGS=( http://download.kde.org/stable/plasma/5.8.6/ -A '*.tar.xz' ) diff --git a/pkgs/desktops/kde-5/plasma/kactivitymanagerd.nix b/pkgs/desktops/plasma-5/kactivitymanagerd.nix index bb90fd6d3ab0..282e58ecf9e6 100644 --- a/pkgs/desktops/kde-5/plasma/kactivitymanagerd.nix +++ b/pkgs/desktops/plasma-5/kactivitymanagerd.nix @@ -1,12 +1,12 @@ { plasmaPackage -, ecm +, extra-cmake-modules , boost, kconfig, kcoreaddons, kdbusaddons, ki18n, kio, kglobalaccel , kwindowsystem, kxmlgui }: plasmaPackage { name = "kactivitymanagerd"; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; propagatedBuildInputs = [ boost kconfig kcoreaddons kdbusaddons kglobalaccel ki18n kio kwindowsystem kxmlgui diff --git a/pkgs/desktops/kde-5/plasma/kde-cli-tools.nix b/pkgs/desktops/plasma-5/kde-cli-tools.nix index 33a7340cb85f..87a46703997a 100644 --- a/pkgs/desktops/kde-5/plasma/kde-cli-tools.nix +++ b/pkgs/desktops/plasma-5/kde-cli-tools.nix @@ -1,12 +1,12 @@ { - plasmaPackage, ecm, + plasmaPackage, extra-cmake-modules, kcmutils, kconfig, kdelibs4support, kdesu, kdoctools, ki18n, kiconthemes, kwindowsystem, qtsvg, qtx11extras }: plasmaPackage { name = "kde-cli-tools"; - nativeBuildInputs = [ ecm kdoctools ]; + nativeBuildInputs = [ extra-cmake-modules kdoctools ]; propagatedBuildInputs = [ kcmutils kconfig kdesu kdelibs4support ki18n kiconthemes kwindowsystem qtsvg qtx11extras diff --git a/pkgs/desktops/kde-5/plasma/kde-gtk-config/0001-follow-symlinks.patch b/pkgs/desktops/plasma-5/kde-gtk-config/0001-follow-symlinks.patch index d610d19eedd2..d610d19eedd2 100644 --- a/pkgs/desktops/kde-5/plasma/kde-gtk-config/0001-follow-symlinks.patch +++ b/pkgs/desktops/plasma-5/kde-gtk-config/0001-follow-symlinks.patch diff --git a/pkgs/desktops/kde-5/plasma/kde-gtk-config/default.nix b/pkgs/desktops/plasma-5/kde-gtk-config/default.nix index 10e55f0d6980..f482f2a6a3f3 100644 --- a/pkgs/desktops/kde-5/plasma/kde-gtk-config/default.nix +++ b/pkgs/desktops/plasma-5/kde-gtk-config/default.nix @@ -1,5 +1,5 @@ { plasmaPackage -, ecm +, extra-cmake-modules , glib , gtk2 , gtk3 @@ -15,7 +15,7 @@ plasmaPackage { name = "kde-gtk-config"; patches = [ ./0001-follow-symlinks.patch ]; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; propagatedBuildInputs = [ ki18n kio glib gtk2 gtk3 karchive kcmutils kconfigwidgets kiconthemes knewstuff diff --git a/pkgs/desktops/plasma-5/kdecoration.nix b/pkgs/desktops/plasma-5/kdecoration.nix new file mode 100644 index 000000000000..546f72c3f384 --- /dev/null +++ b/pkgs/desktops/plasma-5/kdecoration.nix @@ -0,0 +1,7 @@ +{ plasmaPackage, extra-cmake-modules, qtbase }: + +plasmaPackage { + name = "kdecoration"; + nativeBuildInputs = [ extra-cmake-modules ]; + buildInputs = [ qtbase ]; +} diff --git a/pkgs/desktops/kde-5/plasma/kdeplasma-addons.nix b/pkgs/desktops/plasma-5/kdeplasma-addons.nix index a2805f5d804b..3371e17beaf8 100644 --- a/pkgs/desktops/kde-5/plasma/kdeplasma-addons.nix +++ b/pkgs/desktops/plasma-5/kdeplasma-addons.nix @@ -1,4 +1,4 @@ -{ plasmaPackage, ecm, kdoctools +{ plasmaPackage, extra-cmake-modules, kdoctools , kconfig, kconfigwidgets, kcoreaddons, kcmutils, kdelibs4support, ki18n , kio, knewstuff, kross, krunner, kservice, ksysguard, kunitconversion , plasma-framework, plasma-workspace, qtdeclarative, qtx11extras @@ -8,7 +8,7 @@ plasmaPackage { name = "kdeplasma-addons"; nativeBuildInputs = [ - ecm + extra-cmake-modules kdoctools ]; propagatedBuildInputs = [ diff --git a/pkgs/desktops/plasma-5/kgamma5.nix b/pkgs/desktops/plasma-5/kgamma5.nix new file mode 100644 index 000000000000..965c33e6eef8 --- /dev/null +++ b/pkgs/desktops/plasma-5/kgamma5.nix @@ -0,0 +1,9 @@ +{ plasmaPackage, extra-cmake-modules, kdoctools, kdelibs4support +, qtx11extras +}: + +plasmaPackage { + name = "kgamma5"; + nativeBuildInputs = [ extra-cmake-modules kdoctools ]; + propagatedBuildInputs = [ kdelibs4support qtx11extras ]; +} diff --git a/pkgs/desktops/plasma-5/khotkeys.nix b/pkgs/desktops/plasma-5/khotkeys.nix new file mode 100644 index 000000000000..2b02e5916b9f --- /dev/null +++ b/pkgs/desktops/plasma-5/khotkeys.nix @@ -0,0 +1,14 @@ +{ plasmaPackage, extra-cmake-modules, kdoctools, kcmutils +, kdbusaddons, kdelibs4support, kglobalaccel, ki18n, kio, kxmlgui +, plasma-framework, plasma-workspace, qtx11extras +, fetchpatch +}: + +plasmaPackage { + name = "khotkeys"; + nativeBuildInputs = [ extra-cmake-modules kdoctools ]; + propagatedBuildInputs = [ + kdelibs4support kglobalaccel ki18n kio plasma-framework plasma-workspace + qtx11extras kcmutils kdbusaddons kxmlgui + ]; +} diff --git a/pkgs/desktops/kde-5/plasma/kinfocenter.nix b/pkgs/desktops/plasma-5/kinfocenter.nix index 939e4fa62a9c..b4c8dc99adcb 100644 --- a/pkgs/desktops/kde-5/plasma/kinfocenter.nix +++ b/pkgs/desktops/plasma-5/kinfocenter.nix @@ -1,6 +1,6 @@ { plasmaPackage, - ecm, kdoctools, + extra-cmake-modules, kdoctools, kcmutils, kcompletion, kconfig, kconfigwidgets, kcoreaddons, kdbusaddons, kdeclarative, kdelibs4support, ki18n, kiconthemes, kio, kpackage, kservice, kwayland, kwidgetsaddons, kxmlgui, libraw1394, mesa_glu, pciutils, solid @@ -8,7 +8,7 @@ plasmaPackage { name = "kinfocenter"; - nativeBuildInputs = [ ecm kdoctools ]; + nativeBuildInputs = [ extra-cmake-modules kdoctools ]; propagatedBuildInputs = [ kcmutils kcompletion kconfig kconfigwidgets kcoreaddons kdbusaddons kdeclarative kdelibs4support ki18n kiconthemes kio kpackage kservice diff --git a/pkgs/desktops/kde-5/plasma/kmenuedit.nix b/pkgs/desktops/plasma-5/kmenuedit.nix index f10bf6bb3cdd..a27dc5dd92a8 100644 --- a/pkgs/desktops/kde-5/plasma/kmenuedit.nix +++ b/pkgs/desktops/plasma-5/kmenuedit.nix @@ -1,13 +1,13 @@ { plasmaPackage, - ecm, kdoctools, + extra-cmake-modules, kdoctools, kdbusaddons, kdelibs4support, khotkeys, ki18n, kiconthemes, kio, kxmlgui, sonnet }: plasmaPackage { name = "kmenuedit"; - nativeBuildInputs = [ ecm kdoctools ]; + nativeBuildInputs = [ extra-cmake-modules kdoctools ]; propagatedBuildInputs = [ kdbusaddons kdelibs4support khotkeys ki18n kiconthemes kio kxmlgui sonnet ]; diff --git a/pkgs/desktops/kde-5/plasma/kscreen.nix b/pkgs/desktops/plasma-5/kscreen.nix index ecbd88c2146d..e0fbea5d7467 100644 --- a/pkgs/desktops/kde-5/plasma/kscreen.nix +++ b/pkgs/desktops/plasma-5/kscreen.nix @@ -1,11 +1,11 @@ -{ plasmaPackage, ecm, kconfig, kconfigwidgets +{ plasmaPackage, extra-cmake-modules, kconfig, kconfigwidgets , kdbusaddons, kglobalaccel, ki18n, kwidgetsaddons, kxmlgui , libkscreen, qtdeclarative, qtgraphicaleffects }: plasmaPackage { name = "kscreen"; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; propagatedBuildInputs = [ kglobalaccel ki18n libkscreen qtdeclarative qtgraphicaleffects kconfig kconfigwidgets kdbusaddons kwidgetsaddons kxmlgui diff --git a/pkgs/desktops/kde-5/plasma/kscreenlocker.nix b/pkgs/desktops/plasma-5/kscreenlocker.nix index 3c5d7b374724..3551feab76fc 100644 --- a/pkgs/desktops/kde-5/plasma/kscreenlocker.nix +++ b/pkgs/desktops/plasma-5/kscreenlocker.nix @@ -1,13 +1,13 @@ { plasmaPackage, - ecm, kdoctools, + extra-cmake-modules, kdoctools, kcmutils, kcrash, kdeclarative, kdelibs4support, kglobalaccel, kidletime, kwayland, libXcursor, pam, plasma-framework, qtdeclarative, wayland }: plasmaPackage { name = "kscreenlocker"; - nativeBuildInputs = [ ecm kdoctools ]; + nativeBuildInputs = [ extra-cmake-modules kdoctools ]; propagatedBuildInputs = [ kcmutils kcrash kdeclarative kdelibs4support kglobalaccel kidletime kwayland libXcursor pam plasma-framework qtdeclarative wayland diff --git a/pkgs/desktops/kde-5/plasma/ksshaskpass.nix b/pkgs/desktops/plasma-5/ksshaskpass.nix index 80b529a66685..f1a6b82ae93c 100644 --- a/pkgs/desktops/kde-5/plasma/ksshaskpass.nix +++ b/pkgs/desktops/plasma-5/ksshaskpass.nix @@ -1,9 +1,9 @@ -{ plasmaPackage, ecm, kdoctools, kcoreaddons +{ plasmaPackage, extra-cmake-modules, kdoctools, kcoreaddons , ki18n, kwallet, kwidgetsaddons }: plasmaPackage { name = "ksshaskpass"; - nativeBuildInputs = [ ecm kdoctools ]; + nativeBuildInputs = [ extra-cmake-modules kdoctools ]; propagatedBuildInputs = [ kcoreaddons ki18n kwallet kwidgetsaddons ]; } diff --git a/pkgs/desktops/kde-5/plasma/ksysguard.nix b/pkgs/desktops/plasma-5/ksysguard.nix index f7e5cced708a..366b154cae70 100644 --- a/pkgs/desktops/kde-5/plasma/ksysguard.nix +++ b/pkgs/desktops/plasma-5/ksysguard.nix @@ -1,6 +1,6 @@ { plasmaPackage, - ecm, kdoctools, + extra-cmake-modules, kdoctools, lm_sensors, kconfig, kcoreaddons, kdelibs4support, ki18n, kiconthemes, kitemviews, knewstuff, libksysguard, qtwebkit @@ -8,7 +8,7 @@ plasmaPackage { name = "ksysguard"; - nativeBuildInputs = [ ecm kdoctools ]; + nativeBuildInputs = [ extra-cmake-modules kdoctools ]; buildInputs = [ lm_sensors ]; propagatedBuildInputs = [ kconfig kcoreaddons kitemviews knewstuff kiconthemes libksysguard diff --git a/pkgs/desktops/plasma-5/kwallet-pam.nix b/pkgs/desktops/plasma-5/kwallet-pam.nix new file mode 100644 index 000000000000..2789499c50a2 --- /dev/null +++ b/pkgs/desktops/plasma-5/kwallet-pam.nix @@ -0,0 +1,11 @@ +{ plasmaPackage, extra-cmake-modules, pam, socat, libgcrypt +}: + +plasmaPackage { + name = "kwallet-pam"; + + nativeBuildInputs = [ extra-cmake-modules ]; + + buildInputs = [ pam socat libgcrypt ]; + +} diff --git a/pkgs/desktops/kde-5/plasma/kwayland-integration.nix b/pkgs/desktops/plasma-5/kwayland-integration.nix index 376e8ed7cbda..9045227a51a9 100644 --- a/pkgs/desktops/kde-5/plasma/kwayland-integration.nix +++ b/pkgs/desktops/plasma-5/kwayland-integration.nix @@ -1,5 +1,5 @@ { plasmaPackage -, ecm +, extra-cmake-modules , kidletime , kwayland , kwindowsystem @@ -8,7 +8,7 @@ plasmaPackage { name = "kwayland-integration"; nativeBuildInputs = [ - ecm + extra-cmake-modules ]; propagatedBuildInputs = [ kidletime kwindowsystem kwayland diff --git a/pkgs/desktops/kde-5/plasma/kwin/default.nix b/pkgs/desktops/plasma-5/kwin/default.nix index 73e40cdb114c..3555cf91e005 100644 --- a/pkgs/desktops/kde-5/plasma/kwin/default.nix +++ b/pkgs/desktops/plasma-5/kwin/default.nix @@ -1,6 +1,6 @@ { plasmaPackage, lib, copyPathsToStore, - ecm, kdoctools, + extra-cmake-modules, kdoctools, breeze-qt5, epoxy, kactivities, kcompletion, kcmutils, kconfig, kconfigwidgets, kcoreaddons, kcrash, kdeclarative, kdecoration, kglobalaccel, ki18n, kiconthemes, kidletime, kinit, kio, knewstuff, knotifications, @@ -12,7 +12,7 @@ plasmaPackage { name = "kwin"; nativeBuildInputs = [ - ecm + extra-cmake-modules kdoctools ]; propagatedBuildInputs = [ diff --git a/pkgs/desktops/kde-5/plasma/kwin/follow-symlinks.patch b/pkgs/desktops/plasma-5/kwin/follow-symlinks.patch index 60b8f5ef541f..60b8f5ef541f 100644 --- a/pkgs/desktops/kde-5/plasma/kwin/follow-symlinks.patch +++ b/pkgs/desktops/plasma-5/kwin/follow-symlinks.patch diff --git a/pkgs/desktops/kde-5/plasma/kwin/series b/pkgs/desktops/plasma-5/kwin/series index 9dbc88f49975..9dbc88f49975 100644 --- a/pkgs/desktops/kde-5/plasma/kwin/series +++ b/pkgs/desktops/plasma-5/kwin/series diff --git a/pkgs/desktops/kde-5/plasma/kwin/xwayland.patch b/pkgs/desktops/plasma-5/kwin/xwayland.patch index 5fde01d08bf3..5fde01d08bf3 100644 --- a/pkgs/desktops/kde-5/plasma/kwin/xwayland.patch +++ b/pkgs/desktops/plasma-5/kwin/xwayland.patch diff --git a/pkgs/desktops/kde-5/plasma/kwrited.nix b/pkgs/desktops/plasma-5/kwrited.nix index 8dd814f783d0..29498e93404d 100644 --- a/pkgs/desktops/kde-5/plasma/kwrited.nix +++ b/pkgs/desktops/plasma-5/kwrited.nix @@ -1,9 +1,9 @@ -{ plasmaPackage, ecm, kcoreaddons, ki18n, kpty +{ plasmaPackage, extra-cmake-modules, kcoreaddons, ki18n, kpty , knotifications, kdbusaddons }: plasmaPackage { name = "kwrited"; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; propagatedBuildInputs = [ kcoreaddons ki18n kpty knotifications kdbusaddons ]; } diff --git a/pkgs/desktops/kde-5/plasma/libkscreen.nix b/pkgs/desktops/plasma-5/libkscreen.nix index 838ab6ef0e5c..4e04fd5ed1d9 100644 --- a/pkgs/desktops/kde-5/plasma/libkscreen.nix +++ b/pkgs/desktops/plasma-5/libkscreen.nix @@ -1,5 +1,5 @@ { plasmaPackage -, ecm +, extra-cmake-modules , kwayland, libXrandr , qtx11extras }: @@ -7,7 +7,7 @@ plasmaPackage { name = "libkscreen"; nativeBuildInputs = [ - ecm + extra-cmake-modules ]; propagatedBuildInputs = [ kwayland libXrandr qtx11extras diff --git a/pkgs/desktops/kde-5/plasma/libksysguard/0001-qdiriterator-follow-symlinks.patch b/pkgs/desktops/plasma-5/libksysguard/0001-qdiriterator-follow-symlinks.patch index fbbb11ae7556..fbbb11ae7556 100644 --- a/pkgs/desktops/kde-5/plasma/libksysguard/0001-qdiriterator-follow-symlinks.patch +++ b/pkgs/desktops/plasma-5/libksysguard/0001-qdiriterator-follow-symlinks.patch diff --git a/pkgs/desktops/kde-5/plasma/libksysguard/default.nix b/pkgs/desktops/plasma-5/libksysguard/default.nix index 2d81d061f4c7..b67e041a7821 100644 --- a/pkgs/desktops/kde-5/plasma/libksysguard/default.nix +++ b/pkgs/desktops/plasma-5/libksysguard/default.nix @@ -1,6 +1,6 @@ { plasmaPackage, - ecm, + extra-cmake-modules, kauth, kcompletion, kconfig, kconfigwidgets, kcoreaddons, ki18n, kiconthemes, kservice, kwidgetsaddons, kwindowsystem, plasma-framework, qtscript, qtwebkit, qtx11extras @@ -11,7 +11,7 @@ plasmaPackage { patches = [ ./0001-qdiriterator-follow-symlinks.patch ]; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; propagatedBuildInputs = [ kauth kconfig ki18n kiconthemes kwindowsystem kcompletion kconfigwidgets kcoreaddons kservice kwidgetsaddons plasma-framework qtscript qtx11extras diff --git a/pkgs/desktops/kde-5/plasma/milou.nix b/pkgs/desktops/plasma-5/milou.nix index dbf9d0b9e537..43f78d9e2a97 100644 --- a/pkgs/desktops/kde-5/plasma/milou.nix +++ b/pkgs/desktops/plasma-5/milou.nix @@ -1,4 +1,4 @@ -{ plasmaPackage, ecm, qtscript, qtdeclarative +{ plasmaPackage, extra-cmake-modules, qtscript, qtdeclarative , kcoreaddons, ki18n, kdeclarative, kservice, plasma-framework , krunner }: @@ -6,7 +6,7 @@ plasmaPackage { name = "milou"; nativeBuildInputs = [ - ecm + extra-cmake-modules ]; propagatedBuildInputs = [ kdeclarative ki18n krunner plasma-framework qtdeclarative qtscript diff --git a/pkgs/desktops/kde-5/plasma/oxygen.nix b/pkgs/desktops/plasma-5/oxygen.nix index ca63c8d7a377..b4ff775264f8 100644 --- a/pkgs/desktops/kde-5/plasma/oxygen.nix +++ b/pkgs/desktops/plasma-5/oxygen.nix @@ -1,6 +1,6 @@ { plasmaPackage, kdeWrapper, - ecm, + extra-cmake-modules, frameworkintegration, kcmutils, kcompletion, kconfig, kdecoration, kguiaddons, ki18n, kwidgetsaddons, kservice, kwayland, kwindowsystem, qtx11extras }: @@ -8,7 +8,7 @@ let unwrapped = plasmaPackage { name = "oxygen"; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; propagatedBuildInputs = [ frameworkintegration kcmutils kcompletion kconfig kdecoration kguiaddons ki18n kservice kwayland kwidgetsaddons kwindowsystem qtx11extras diff --git a/pkgs/desktops/kde-5/plasma/plasma-desktop/default.nix b/pkgs/desktops/plasma-5/plasma-desktop/default.nix index 21ceec25d53f..1ac257057309 100644 --- a/pkgs/desktops/kde-5/plasma/plasma-desktop/default.nix +++ b/pkgs/desktops/plasma-5/plasma-desktop/default.nix @@ -1,6 +1,6 @@ { plasmaPackage, lib, copyPathsToStore, - ecm, kdoctools, + extra-cmake-modules, kdoctools, attica, baloo, boost, fontconfig, ibus, kactivities, kactivities-stats, kauth, kcmutils, kdbusaddons, kdeclarative, kded, kdelibs4support, kemoticons, kglobalaccel, ki18n, kitemmodels, knewstuff, knotifications, knotifyconfig, @@ -13,7 +13,7 @@ plasmaPackage rec { name = "plasma-desktop"; - nativeBuildInputs = [ ecm kdoctools ]; + nativeBuildInputs = [ extra-cmake-modules kdoctools ]; buildInputs = [ attica boost fontconfig ibus kcmutils kdbusaddons kded kitemmodels knewstuff knotifications knotifyconfig kwallet libcanberra_kde libXcursor diff --git a/pkgs/desktops/kde-5/plasma/plasma-desktop/hwclock-path.patch b/pkgs/desktops/plasma-5/plasma-desktop/hwclock-path.patch index 5623de84668f..5623de84668f 100644 --- a/pkgs/desktops/kde-5/plasma/plasma-desktop/hwclock-path.patch +++ b/pkgs/desktops/plasma-5/plasma-desktop/hwclock-path.patch diff --git a/pkgs/desktops/kde-5/plasma/plasma-desktop/ibus.patch b/pkgs/desktops/plasma-5/plasma-desktop/ibus.patch index d5ac4b250875..d5ac4b250875 100644 --- a/pkgs/desktops/kde-5/plasma/plasma-desktop/ibus.patch +++ b/pkgs/desktops/plasma-5/plasma-desktop/ibus.patch diff --git a/pkgs/desktops/kde-5/plasma/plasma-desktop/qml-import-paths.patch b/pkgs/desktops/plasma-5/plasma-desktop/qml-import-paths.patch index def5b577b972..def5b577b972 100644 --- a/pkgs/desktops/kde-5/plasma/plasma-desktop/qml-import-paths.patch +++ b/pkgs/desktops/plasma-5/plasma-desktop/qml-import-paths.patch diff --git a/pkgs/desktops/kde-5/plasma/plasma-desktop/series b/pkgs/desktops/plasma-5/plasma-desktop/series index 36778cd1c560..36778cd1c560 100644 --- a/pkgs/desktops/kde-5/plasma/plasma-desktop/series +++ b/pkgs/desktops/plasma-5/plasma-desktop/series diff --git a/pkgs/desktops/kde-5/plasma/plasma-desktop/tzdir.patch b/pkgs/desktops/plasma-5/plasma-desktop/tzdir.patch index 97504b330fed..97504b330fed 100644 --- a/pkgs/desktops/kde-5/plasma/plasma-desktop/tzdir.patch +++ b/pkgs/desktops/plasma-5/plasma-desktop/tzdir.patch diff --git a/pkgs/desktops/kde-5/plasma/plasma-integration.nix b/pkgs/desktops/plasma-5/plasma-integration.nix index e8680fea930a..97d30dcd7732 100644 --- a/pkgs/desktops/kde-5/plasma/plasma-integration.nix +++ b/pkgs/desktops/plasma-5/plasma-integration.nix @@ -1,4 +1,4 @@ -{ plasmaPackage, ecm +{ plasmaPackage, extra-cmake-modules , breeze-qt5, kconfig, kconfigwidgets, kiconthemes, kio, kwayland , libXcursor }: @@ -8,7 +8,7 @@ plasmaPackage { name = "plasma-integration"; nativeBuildInputs = [ - ecm + extra-cmake-modules ]; buildInputs = [ breeze-qt5 kconfig kconfigwidgets kiconthemes kio kwayland diff --git a/pkgs/desktops/kde-5/plasma/plasma-nm/0001-mobile-broadband-provider-info-path.patch b/pkgs/desktops/plasma-5/plasma-nm/0001-mobile-broadband-provider-info-path.patch index 79b5cfb437e2..79b5cfb437e2 100644 --- a/pkgs/desktops/kde-5/plasma/plasma-nm/0001-mobile-broadband-provider-info-path.patch +++ b/pkgs/desktops/plasma-5/plasma-nm/0001-mobile-broadband-provider-info-path.patch diff --git a/pkgs/desktops/kde-5/plasma/plasma-nm/default.nix b/pkgs/desktops/plasma-5/plasma-nm/default.nix index b6d18dbf91d9..da57653bb083 100644 --- a/pkgs/desktops/kde-5/plasma/plasma-nm/default.nix +++ b/pkgs/desktops/plasma-5/plasma-nm/default.nix @@ -1,4 +1,4 @@ -{ plasmaPackage, substituteAll, ecm, kdoctools +{ plasmaPackage, substituteAll, extra-cmake-modules, kdoctools , kcompletion, kconfigwidgets, kcoreaddons, kdbusaddons, kdeclarative , kdelibs4support, ki18n, kiconthemes, kinit, kio, kitemviews , knotifications, kservice, kwallet, kwidgetsaddons, kwindowsystem @@ -15,7 +15,7 @@ plasmaPackage { inherit mobile_broadband_provider_info; }) ]; - nativeBuildInputs = [ ecm kdoctools ]; + nativeBuildInputs = [ extra-cmake-modules kdoctools ]; propagatedBuildInputs = [ kdeclarative kdelibs4support ki18n kio kwindowsystem plasma-framework qtdeclarative kcompletion kconfigwidgets kcoreaddons kdbusaddons kiconthemes diff --git a/pkgs/desktops/kde-5/plasma/plasma-pa.nix b/pkgs/desktops/plasma-5/plasma-pa.nix index 7bf97d745fe4..f398e1a9efc0 100644 --- a/pkgs/desktops/kde-5/plasma/plasma-pa.nix +++ b/pkgs/desktops/plasma-5/plasma-pa.nix @@ -1,6 +1,6 @@ { plasmaPackage, - ecm, + extra-cmake-modules, gconf, glib, kdoctools, kconfigwidgets, kcoreaddons, kdeclarative, kglobalaccel, ki18n, libcanberra_gtk3, libpulseaudio, plasma-framework }: @@ -8,7 +8,7 @@ plasmaPackage { name = "plasma-pa"; nativeBuildInputs = [ - ecm kdoctools + extra-cmake-modules kdoctools ]; propagatedBuildInputs = [ gconf glib kconfigwidgets kcoreaddons kdeclarative diff --git a/pkgs/desktops/kde-5/plasma/plasma-workspace-wallpapers.nix b/pkgs/desktops/plasma-5/plasma-workspace-wallpapers.nix index 6ffdb17cbeab..8af9caaa5795 100644 --- a/pkgs/desktops/kde-5/plasma/plasma-workspace-wallpapers.nix +++ b/pkgs/desktops/plasma-5/plasma-workspace-wallpapers.nix @@ -1,11 +1,11 @@ { plasmaPackage -, ecm +, extra-cmake-modules }: plasmaPackage { name = "plasma-workspace-wallpapers"; outputs = [ "out" ]; nativeBuildInputs = [ - ecm + extra-cmake-modules ]; } diff --git a/pkgs/desktops/kde-5/plasma/plasma-workspace/default.nix b/pkgs/desktops/plasma-5/plasma-workspace/default.nix index 1e38c0c74dd4..19d530da1a60 100644 --- a/pkgs/desktops/kde-5/plasma/plasma-workspace/default.nix +++ b/pkgs/desktops/plasma-5/plasma-workspace/default.nix @@ -1,7 +1,7 @@ { plasmaPackage, lib, copyPathsToStore, - ecm, kdoctools, + extra-cmake-modules, kdoctools, baloo, kactivities, kcmutils, kconfig, kcrash, kdbusaddons, kdeclarative, kdelibs4support, kdesu, kglobalaccel, kidletime, kjsembed, knewstuff, @@ -14,7 +14,7 @@ plasmaPackage { name = "plasma-workspace"; - nativeBuildInputs = [ ecm kdoctools ]; + nativeBuildInputs = [ extra-cmake-modules kdoctools ]; buildInputs = [ baloo kactivities kcmutils kconfig kcrash kdbusaddons kdeclarative kdelibs4support kdesu kglobalaccel kidletime kjsembed knewstuff diff --git a/pkgs/desktops/kde-5/plasma/plasma-workspace/qml-import-path.patch b/pkgs/desktops/plasma-5/plasma-workspace/qml-import-path.patch index 12eb65caa717..12eb65caa717 100644 --- a/pkgs/desktops/kde-5/plasma/plasma-workspace/qml-import-path.patch +++ b/pkgs/desktops/plasma-5/plasma-workspace/qml-import-path.patch diff --git a/pkgs/desktops/kde-5/plasma/plasma-workspace/series b/pkgs/desktops/plasma-5/plasma-workspace/series index b9081298bd69..b9081298bd69 100644 --- a/pkgs/desktops/kde-5/plasma/plasma-workspace/series +++ b/pkgs/desktops/plasma-5/plasma-workspace/series diff --git a/pkgs/desktops/kde-5/plasma/polkit-kde-agent.nix b/pkgs/desktops/plasma-5/polkit-kde-agent.nix index 002c2bb10ff3..1d7d20a7ffbf 100644 --- a/pkgs/desktops/kde-5/plasma/polkit-kde-agent.nix +++ b/pkgs/desktops/plasma-5/polkit-kde-agent.nix @@ -1,12 +1,12 @@ { - plasmaPackage, ecm, + plasmaPackage, extra-cmake-modules, kcoreaddons, kconfig, kcrash, kdbusaddons, ki18n, kiconthemes, knotifications, kwidgetsaddons, kwindowsystem, polkit-qt }: plasmaPackage { name = "polkit-kde-agent"; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; propagatedBuildInputs = [ kdbusaddons kwidgetsaddons kcoreaddons kcrash kconfig ki18n kiconthemes knotifications kwindowsystem polkit-qt diff --git a/pkgs/desktops/kde-5/plasma/powerdevil.nix b/pkgs/desktops/plasma-5/powerdevil.nix index c0c18a6eae6c..c3469cc2ebc8 100644 --- a/pkgs/desktops/kde-5/plasma/powerdevil.nix +++ b/pkgs/desktops/plasma-5/powerdevil.nix @@ -1,4 +1,4 @@ -{ plasmaPackage, ecm, kdoctools, bluez-qt, kactivities +{ plasmaPackage, extra-cmake-modules, kdoctools, bluez-qt, kactivities , kauth, kconfig, kdbusaddons, kdelibs4support, kglobalaccel, ki18n , kidletime, kio, knotifyconfig, kwayland, libkscreen, networkmanager-qt , plasma-workspace, qtx11extras, solid, udev @@ -6,7 +6,7 @@ plasmaPackage { name = "powerdevil"; - nativeBuildInputs = [ ecm kdoctools ]; + nativeBuildInputs = [ extra-cmake-modules kdoctools ]; propagatedBuildInputs = [ kconfig kdbusaddons knotifyconfig solid udev bluez-qt kactivities kauth kdelibs4support kglobalaccel ki18n kio kidletime kwayland libkscreen diff --git a/pkgs/desktops/plasma-5/srcs.nix b/pkgs/desktops/plasma-5/srcs.nix new file mode 100644 index 000000000000..aaaea8708ae6 --- /dev/null +++ b/pkgs/desktops/plasma-5/srcs.nix @@ -0,0 +1,325 @@ +# DO NOT EDIT! This file is generated automatically by fetch-kde-qt.sh +{ fetchurl, mirror }: + +{ + bluedevil = { + version = "5.8.6"; + src = fetchurl { + url = "${mirror}/stable/plasma/5.8.6/bluedevil-5.8.6.tar.xz"; + sha256 = "0qz9v5wrx72s3r1shi3m77931kl7sx7p89dk3h9w1hy61bx0azlj"; + name = "bluedevil-5.8.6.tar.xz"; + }; + }; + breeze = { + version = "5.8.6"; + src = fetchurl { + url = "${mirror}/stable/plasma/5.8.6/breeze-5.8.6.tar.xz"; + sha256 = "16wxrmnlk359kapa6zj8hfcjjdffvmqc7ibzdxdd8xpdva01p7sm"; + name = "breeze-5.8.6.tar.xz"; + }; + }; + breeze-grub = { + version = "5.8.6"; + src = fetchurl { + url = "${mirror}/stable/plasma/5.8.6/breeze-grub-5.8.6.tar.xz"; + sha256 = "1ywlczid32a8z4rrjxc6c3b8q3l02a3b7scbxyljgfv7xzggj1fm"; + name = "breeze-grub-5.8.6.tar.xz"; + }; + }; + breeze-gtk = { + version = "5.8.6"; + src = fetchurl { + url = "${mirror}/stable/plasma/5.8.6/breeze-gtk-5.8.6.tar.xz"; + sha256 = "1ppxsf868d2v9kmdz18hnbdwwqbs0xhpn7pc3bdxxj4gk87dpxpl"; + name = "breeze-gtk-5.8.6.tar.xz"; + }; + }; + breeze-plymouth = { + version = "5.8.6"; + src = fetchurl { + url = "${mirror}/stable/plasma/5.8.6/breeze-plymouth-5.8.6.tar.xz"; + sha256 = "0cdrl0ri4b5zbld8wb3hkmsncac6qn3mswvb7zp63br3jiqfg7v8"; + name = "breeze-plymouth-5.8.6.tar.xz"; + }; + }; + discover = { + version = "5.8.6"; + src = fetchurl { + url = "${mirror}/stable/plasma/5.8.6/discover-5.8.6.tar.xz"; + sha256 = "04smq3n0prs2bjq6sn5kd5mp4aay58nr2fg10yq39sgyp2qkls0r"; + name = "discover-5.8.6.tar.xz"; + }; + }; + kactivitymanagerd = { + version = "5.8.6"; + src = fetchurl { + url = "${mirror}/stable/plasma/5.8.6/kactivitymanagerd-5.8.6.tar.xz"; + sha256 = "0cxpf3aj22ap6m24gm1ybjykwv10ryqhpd4bv6wr748ckj5zsgh4"; + name = "kactivitymanagerd-5.8.6.tar.xz"; + }; + }; + kde-cli-tools = { + version = "5.8.6"; + src = fetchurl { + url = "${mirror}/stable/plasma/5.8.6/kde-cli-tools-5.8.6.tar.xz"; + sha256 = "08j6mpn6g4mrdwiljfm5rqvyfjgd3wd4kpwmpmvrprqrd755m0cs"; + name = "kde-cli-tools-5.8.6.tar.xz"; + }; + }; + kdecoration = { + version = "5.8.6"; + src = fetchurl { + url = "${mirror}/stable/plasma/5.8.6/kdecoration-5.8.6.tar.xz"; + sha256 = "0nbh0phgfzc5j1l1adnq3gn5fkazgk2pg2iiqjkfbax6a7r9wwny"; + name = "kdecoration-5.8.6.tar.xz"; + }; + }; + kde-gtk-config = { + version = "5.8.6"; + src = fetchurl { + url = "${mirror}/stable/plasma/5.8.6/kde-gtk-config-5.8.6.tar.xz"; + sha256 = "07in78awn7kqg47zbypj5lb2i9yibrmpzkljjy67wwcwax5zlm2d"; + name = "kde-gtk-config-5.8.6.tar.xz"; + }; + }; + kdeplasma-addons = { + version = "5.8.6"; + src = fetchurl { + url = "${mirror}/stable/plasma/5.8.6/kdeplasma-addons-5.8.6.tar.xz"; + sha256 = "0yvh2n736apbfzqc5kdf3b0a9jyvlzcaamall1paa8jb8cg706px"; + name = "kdeplasma-addons-5.8.6.tar.xz"; + }; + }; + kgamma5 = { + version = "5.8.6"; + src = fetchurl { + url = "${mirror}/stable/plasma/5.8.6/kgamma5-5.8.6.tar.xz"; + sha256 = "1kk9bygihnggm4kmgxf1bbd0wc92ijmzvm9k5cmkm3v0pc975viz"; + name = "kgamma5-5.8.6.tar.xz"; + }; + }; + khotkeys = { + version = "5.8.6"; + src = fetchurl { + url = "${mirror}/stable/plasma/5.8.6/khotkeys-5.8.6.tar.xz"; + sha256 = "0x6z025vzpccz0yql7nafcarq6rpw3p7d7wjffdck3lym8vkalxj"; + name = "khotkeys-5.8.6.tar.xz"; + }; + }; + kinfocenter = { + version = "5.8.6"; + src = fetchurl { + url = "${mirror}/stable/plasma/5.8.6/kinfocenter-5.8.6.tar.xz"; + sha256 = "1d8h5h01dy7s1yaapamcz4dzf0pjdykf7jn8y34hc0djxww29k4b"; + name = "kinfocenter-5.8.6.tar.xz"; + }; + }; + kmenuedit = { + version = "5.8.6"; + src = fetchurl { + url = "${mirror}/stable/plasma/5.8.6/kmenuedit-5.8.6.tar.xz"; + sha256 = "0zvircfmggc4vwz6520i67s1yfv34zkx8ydj1vfhaabpsn7nqn1w"; + name = "kmenuedit-5.8.6.tar.xz"; + }; + }; + kscreen = { + version = "5.8.6"; + src = fetchurl { + url = "${mirror}/stable/plasma/5.8.6/kscreen-5.8.6.tar.xz"; + sha256 = "15k8pm1k2ylxqb3x4b75zi68firsxq56qfn39xddxnzncbsqp54r"; + name = "kscreen-5.8.6.tar.xz"; + }; + }; + kscreenlocker = { + version = "5.8.6"; + src = fetchurl { + url = "${mirror}/stable/plasma/5.8.6/kscreenlocker-5.8.6.tar.xz"; + sha256 = "1cql5wq4zh8sdwlgwibnyyx169g79948nhdqslw08ddw61f9llgd"; + name = "kscreenlocker-5.8.6.tar.xz"; + }; + }; + ksshaskpass = { + version = "5.8.6"; + src = fetchurl { + url = "${mirror}/stable/plasma/5.8.6/ksshaskpass-5.8.6.tar.xz"; + sha256 = "0y912dcvdx6gih0brnxnd3cysw0rj5pw7684xswaqz5i8iimw68g"; + name = "ksshaskpass-5.8.6.tar.xz"; + }; + }; + ksysguard = { + version = "5.8.6"; + src = fetchurl { + url = "${mirror}/stable/plasma/5.8.6/ksysguard-5.8.6.tar.xz"; + sha256 = "0c0bxv5m0kziyqzwr6x46g4x2kahmq6n95kgcbihv74yvnn6v049"; + name = "ksysguard-5.8.6.tar.xz"; + }; + }; + kwallet-pam = { + version = "5.8.6"; + src = fetchurl { + url = "${mirror}/stable/plasma/5.8.6/kwallet-pam-5.8.6.tar.xz"; + sha256 = "1ii1035w8xqvkbm0ckj5iq4qq7fnbix7vyvwmdjm8m4xm0rr7g33"; + name = "kwallet-pam-5.8.6.tar.xz"; + }; + }; + kwayland-integration = { + version = "5.8.6"; + src = fetchurl { + url = "${mirror}/stable/plasma/5.8.6/kwayland-integration-5.8.6.tar.xz"; + sha256 = "0bd8hnqr6sqlzk0qrymk6jdxnl2niamb1a08m8d27qdybm0ga56v"; + name = "kwayland-integration-5.8.6.tar.xz"; + }; + }; + kwin = { + version = "5.8.6"; + src = fetchurl { + url = "${mirror}/stable/plasma/5.8.6/kwin-5.8.6.tar.xz"; + sha256 = "1p9dgh6d25h41bgnx9jiyb9qg7jyc61kbzh9j9vy9j5kd97dsjg5"; + name = "kwin-5.8.6.tar.xz"; + }; + }; + kwrited = { + version = "5.8.6"; + src = fetchurl { + url = "${mirror}/stable/plasma/5.8.6/kwrited-5.8.6.tar.xz"; + sha256 = "08frbgzfzqhi4si3v024lx4dypxvm60mdz2xzyyx482iqjny97d5"; + name = "kwrited-5.8.6.tar.xz"; + }; + }; + libkscreen = { + version = "5.8.6"; + src = fetchurl { + url = "${mirror}/stable/plasma/5.8.6/libkscreen-5.8.6.tar.xz"; + sha256 = "0210lyvsk9wm7svj3bkaa9j0n57lfzs56jplasdqdia1450n7dmf"; + name = "libkscreen-5.8.6.tar.xz"; + }; + }; + libksysguard = { + version = "5.8.6"; + src = fetchurl { + url = "${mirror}/stable/plasma/5.8.6/libksysguard-5.8.6.tar.xz"; + sha256 = "0i325hzl9zsknkr1dcdg64r4msrnvbb4b9rmjysygnpyll6n9bm8"; + name = "libksysguard-5.8.6.tar.xz"; + }; + }; + milou = { + version = "5.8.6"; + src = fetchurl { + url = "${mirror}/stable/plasma/5.8.6/milou-5.8.6.tar.xz"; + sha256 = "00svi7f9pa1m6gxkkf8vngyf4jzv7k88pbcnlvik38zws17j4vbs"; + name = "milou-5.8.6.tar.xz"; + }; + }; + oxygen = { + version = "5.8.6"; + src = fetchurl { + url = "${mirror}/stable/plasma/5.8.6/oxygen-5.8.6.tar.xz"; + sha256 = "1dspmzjmymnnv6blz2sfw0ynpqbw6cqzvhlnmzakf3xq8jd99k0m"; + name = "oxygen-5.8.6.tar.xz"; + }; + }; + plasma-desktop = { + version = "5.8.6"; + src = fetchurl { + url = "${mirror}/stable/plasma/5.8.6/plasma-desktop-5.8.6.tar.xz"; + sha256 = "10qz1r777wr8wdr5lb7fph8ny8sxbm9vlq6njpn9rxxwr0nhlp6y"; + name = "plasma-desktop-5.8.6.tar.xz"; + }; + }; + plasma-integration = { + version = "5.8.6"; + src = fetchurl { + url = "${mirror}/stable/plasma/5.8.6/plasma-integration-5.8.6.tar.xz"; + sha256 = "0v07i95xxv5rp0lis2xm0p66qicbigqjlx3sxyvcj3llf73jpcnc"; + name = "plasma-integration-5.8.6.tar.xz"; + }; + }; + plasma-nm = { + version = "5.8.6"; + src = fetchurl { + url = "${mirror}/stable/plasma/5.8.6/plasma-nm-5.8.6.tar.xz"; + sha256 = "162756r2rif415w8x6x67h8bwjvvmfv56s84p7a4k5zisyr1j678"; + name = "plasma-nm-5.8.6.tar.xz"; + }; + }; + plasma-pa = { + version = "5.8.6"; + src = fetchurl { + url = "${mirror}/stable/plasma/5.8.6/plasma-pa-5.8.6.tar.xz"; + sha256 = "173w2ks2nm4sp96vj3pkax1d8asshd9y39m5cwq8mgzgpz6ldjp8"; + name = "plasma-pa-5.8.6.tar.xz"; + }; + }; + plasma-sdk = { + version = "5.8.6"; + src = fetchurl { + url = "${mirror}/stable/plasma/5.8.6/plasma-sdk-5.8.6.tar.xz"; + sha256 = "1vadfwv23r33f5byaf3zj8m12a84r4qk24ak7qyq869m9gznyw8r"; + name = "plasma-sdk-5.8.6.tar.xz"; + }; + }; + plasma-tests = { + version = "5.8.6"; + src = fetchurl { + url = "${mirror}/stable/plasma/5.8.6/plasma-tests-5.8.6.tar.xz"; + sha256 = "0baqfn861jy7kmaqka79k6nkr7vivzymk8jy3glkh21rm4yl8gvh"; + name = "plasma-tests-5.8.6.tar.xz"; + }; + }; + plasma-workspace = { + version = "5.8.6"; + src = fetchurl { + url = "${mirror}/stable/plasma/5.8.6/plasma-workspace-5.8.6.tar.xz"; + sha256 = "14h1lmyyb4rxnww7vyn9wnsi56v9ydhpbwmk9sv3zj1k9igqpasi"; + name = "plasma-workspace-5.8.6.tar.xz"; + }; + }; + plasma-workspace-wallpapers = { + version = "5.8.6"; + src = fetchurl { + url = "${mirror}/stable/plasma/5.8.6/plasma-workspace-wallpapers-5.8.6.tar.xz"; + sha256 = "11s2sc37xni78fyb0yvnhlkw6ahhx4pkynqr06bmd9vq6c3133id"; + name = "plasma-workspace-wallpapers-5.8.6.tar.xz"; + }; + }; + polkit-kde-agent = { + version = "1-5.8.6"; + src = fetchurl { + url = "${mirror}/stable/plasma/5.8.6/polkit-kde-agent-1-5.8.6.tar.xz"; + sha256 = "10bglbr7svm9bfl4a5kfyvj5zpyk46hsyh2rq9z9qy9ds76fh9w2"; + name = "polkit-kde-agent-1-5.8.6.tar.xz"; + }; + }; + powerdevil = { + version = "5.8.6"; + src = fetchurl { + url = "${mirror}/stable/plasma/5.8.6/powerdevil-5.8.6.tar.xz"; + sha256 = "0cmyx267z917qqpndpzqzlgzx1hf54430644rhr7cf9iqqilvnv4"; + name = "powerdevil-5.8.6.tar.xz"; + }; + }; + sddm-kcm = { + version = "5.8.6"; + src = fetchurl { + url = "${mirror}/stable/plasma/5.8.6/sddm-kcm-5.8.6.tar.xz"; + sha256 = "0xd8137pb0409vfiwv5n1vzzwa1vcvf3rgc36fid5hnlrdc15ilc"; + name = "sddm-kcm-5.8.6.tar.xz"; + }; + }; + systemsettings = { + version = "5.8.6"; + src = fetchurl { + url = "${mirror}/stable/plasma/5.8.6/systemsettings-5.8.6.tar.xz"; + sha256 = "1zy037pb8w9xbzg316hbqfmfm39aylqngb5v08yn5hcnvxcll71v"; + name = "systemsettings-5.8.6.tar.xz"; + }; + }; + user-manager = { + version = "5.8.6"; + src = fetchurl { + url = "${mirror}/stable/plasma/5.8.6/user-manager-5.8.6.tar.xz"; + sha256 = "1z0aj5cvl5rxikbbvrvg0dq6y68jxm34ssf3gvhkd0jqlyqdl7ip"; + name = "user-manager-5.8.6.tar.xz"; + }; + }; +} diff --git a/pkgs/desktops/kde-5/plasma/startkde/default.nix b/pkgs/desktops/plasma-5/startkde/default.nix index 516d651cec25..516d651cec25 100644 --- a/pkgs/desktops/kde-5/plasma/startkde/default.nix +++ b/pkgs/desktops/plasma-5/startkde/default.nix diff --git a/pkgs/desktops/kde-5/plasma/startkde/startkde.sh b/pkgs/desktops/plasma-5/startkde/startkde.sh index a403e8e05e6e..a403e8e05e6e 100755 --- a/pkgs/desktops/kde-5/plasma/startkde/startkde.sh +++ b/pkgs/desktops/plasma-5/startkde/startkde.sh diff --git a/pkgs/desktops/kde-5/plasma/systemsettings.nix b/pkgs/desktops/plasma-5/systemsettings.nix index 407d0e916264..32ea83d9d507 100644 --- a/pkgs/desktops/kde-5/plasma/systemsettings.nix +++ b/pkgs/desktops/plasma-5/systemsettings.nix @@ -1,12 +1,12 @@ { - plasmaPackage, ecm, kdoctools, makeQtWrapper, + plasmaPackage, extra-cmake-modules, kdoctools, makeQtWrapper, kcmutils, kconfig, kdbusaddons, khtml, ki18n, kiconthemes, kio, kitemviews, kservice, kwindowsystem, kxmlgui, qtquickcontrols }: plasmaPackage { name = "systemsettings"; - nativeBuildInputs = [ ecm kdoctools makeQtWrapper ]; + nativeBuildInputs = [ extra-cmake-modules kdoctools makeQtWrapper ]; propagatedBuildInputs = [ kcmutils kconfig kdbusaddons khtml ki18n kiconthemes kio kitemviews kservice kwindowsystem kxmlgui qtquickcontrols diff --git a/pkgs/desktops/xfce/applications/xfce4-mixer.nix b/pkgs/desktops/xfce/applications/xfce4-mixer.nix index 78c37771811b..05a5fa4a6fcc 100644 --- a/pkgs/desktops/xfce/applications/xfce4-mixer.nix +++ b/pkgs/desktops/xfce/applications/xfce4-mixer.nix @@ -1,16 +1,16 @@ { stdenv, fetchurl, pkgconfig, intltool, makeWrapper -, glib, gstreamer, gst_plugins_base, gtk +, glib, gstreamer, gst-plugins-base, gtk , libxfce4util, libxfce4ui, xfce4panel, xfconf, libunique ? null -, pulseaudioSupport ? false, gst_plugins_good +, pulseaudioSupport ? false, gst-plugins-good }: let # The usual Gstreamer plugins package has a zillion dependencies # that we don't need for a simple mixer, so build a minimal package. - gst_plugins_minimal = gst_plugins_base.override { + gst_plugins_minimal = gst-plugins-base.override { minimalDeps = true; }; - gst_plugins_pulse = gst_plugins_good.override { + gst_plugins_pulse = gst-plugins-good.override { minimalDeps = true; }; gst_plugins = [ gst_plugins_minimal ] ++ stdenv.lib.optional pulseaudioSupport gst_plugins_pulse; diff --git a/pkgs/desktops/xfce/applications/xfce4-volumed.nix b/pkgs/desktops/xfce/applications/xfce4-volumed.nix index b603229e938d..8e4f952438fe 100644 --- a/pkgs/desktops/xfce/applications/xfce4-volumed.nix +++ b/pkgs/desktops/xfce/applications/xfce4-volumed.nix @@ -1,12 +1,12 @@ { stdenv, fetchurl, pkgconfig, makeWrapper -, gstreamer, gtk2, gst_plugins_base, libnotify +, gstreamer, gtk2, gst-plugins-base, libnotify , keybinder, xfconf }: let # The usual Gstreamer plugins package has a zillion dependencies # that we don't need for a simple mixer, so build a minimal package. - gst_plugins_minimal = gst_plugins_base.override { + gst_plugins_minimal = gst-plugins-base.override { minimalDeps = true; }; diff --git a/pkgs/desktops/xfce/panel-plugins/xfce4-windowck-plugin.nix b/pkgs/desktops/xfce/panel-plugins/xfce4-windowck-plugin.nix index 523283b453a7..37ad643930ab 100644 --- a/pkgs/desktops/xfce/panel-plugins/xfce4-windowck-plugin.nix +++ b/pkgs/desktops/xfce/panel-plugins/xfce4-windowck-plugin.nix @@ -16,7 +16,10 @@ stdenv.mkDerivation rec { buildInputs = [ pkgconfig intltool python3 imagemagick libwnck gtk2 exo libxfce4ui libxfce4util xfce4panel xfconf xfce4_dev_tools ]; - preConfigure = "./autogen.sh"; + preConfigure = '' + ./autogen.sh + patchShebangs . + ''; enableParallelBuilding = true; diff --git a/pkgs/development/compilers/elm/default.nix b/pkgs/development/compilers/elm/default.nix index e125a050b249..7cba0cab351f 100644 --- a/pkgs/development/compilers/elm/default.nix +++ b/pkgs/development/compilers/elm/default.nix @@ -40,7 +40,7 @@ let EOF '' + lib.concatStrings cmds; - hsPkgs = haskell.packages.ghc801.override { + hsPkgs = haskell.packages.ghc802.override { overrides = self: super: let hlib = haskell.lib; elmRelease = import ./packages/release.nix { inherit (self) callPackage; }; @@ -77,6 +77,21 @@ let in elmPkgs // { inherit elmPkgs; elmVersion = elmRelease.version; + # needed for elm-package + http-client = hlib.overrideCabal super.http-client (drv: { + version = "0.4.31.2"; + sha256 = "12yq2l6bvmxg5w6cw5ravdh39g8smwn1j44mv36pfmkhm5402h8n"; + }); + http-client-tls = hlib.overrideCabal super.http-client-tls (drv: { + version = "0.2.4.1"; + sha256 = "18wbca7jg15p0ds3339f435nqv2ng0fqc4bylicjzlsww625ij4d"; + }); + # https://github.com/elm-lang/elm-compiler/issues/1566 + indents = hlib.overrideCabal super.indents (drv: { + version = "0.3.3"; + sha256 = "16lz21bp9j14xilnq8yym22p3saxvc9fsgfcf5awn2a6i6n527xn"; + libraryHaskellDepends = drv.libraryHaskellDepends ++ [super.concatenative]; + }); }; }; in hsPkgs.elmPkgs // { diff --git a/pkgs/development/compilers/ghcjs/base.nix b/pkgs/development/compilers/ghcjs/base.nix index 393278be49ef..5ffc6e2720e0 100644 --- a/pkgs/development/compilers/ghcjs/base.nix +++ b/pkgs/development/compilers/ghcjs/base.nix @@ -1,4 +1,5 @@ { mkDerivation +, broken ? false , test-framework , test-framework-hunit , test-framework-quickcheck2 @@ -39,6 +40,11 @@ , coreutils , libiconv +, ghcjsNodePkgs ? callPackage ../../../top-level/node-packages.nix { + generated = ./node-packages-generated.nix; + self = ghcjsNodePkgs; + } + , version ? "0.2.0" , ghcjsSrc ? fetchFromGitHub { owner = "ghcjs"; @@ -160,12 +166,7 @@ in mkDerivation (rec { --with-gmp-includes ${gmp.dev}/include \ --with-gmp-libraries ${gmp.out}/lib ''; - passthru = let - ghcjsNodePkgs = callPackage ../../../top-level/node-packages.nix { - generated = ./node-packages-generated.nix; - self = ghcjsNodePkgs; - }; - in { + passthru = { inherit bootPkgs; isCross = true; isGhcjs = true; @@ -183,5 +184,5 @@ in mkDerivation (rec { license = stdenv.lib.licenses.bsd3; platforms = ghc.meta.platforms; maintainers = with stdenv.lib.maintainers; [ jwiegley cstrahan ]; - broken = true; # http://hydra.nixos.org/build/45110274 + inherit broken; }) diff --git a/pkgs/development/compilers/ghcjs/default.nix b/pkgs/development/compilers/ghcjs/default.nix index 7400057b128f..eda724e5947b 100644 --- a/pkgs/development/compilers/ghcjs/default.nix +++ b/pkgs/development/compilers/ghcjs/default.nix @@ -1,3 +1,6 @@ { bootPkgs }: -bootPkgs.callPackage ./base.nix { inherit bootPkgs; } +bootPkgs.callPackage ./base.nix { + inherit bootPkgs; + broken = true; # http://hydra.nixos.org/build/45110274 +} diff --git a/pkgs/development/compilers/llvm/4.0/clang/default.nix b/pkgs/development/compilers/llvm/4.0/clang/default.nix new file mode 100644 index 000000000000..f566cd6d21c2 --- /dev/null +++ b/pkgs/development/compilers/llvm/4.0/clang/default.nix @@ -0,0 +1,56 @@ +{ stdenv, fetch, cmake, libxml2, libedit, llvm, version, release_version, clang-tools-extra_src, python }: + +let + gcc = if stdenv.cc.isGNU then stdenv.cc.cc else stdenv.cc.cc.gcc; + self = stdenv.mkDerivation { + name = "clang-${version}"; + + unpackPhase = '' + unpackFile ${fetch "cfe" "1p55db1yfya60r2fnr9bh8pj8fqq5gjc1fnv0c1kmac8yfvwkmkn"} + mv cfe-${version}* clang + sourceRoot=$PWD/clang + unpackFile ${clang-tools-extra_src} + mv clang-tools-extra-* $sourceRoot/tools/extra + ''; + + buildInputs = [ cmake libedit libxml2 llvm python ]; + + cmakeFlags = [ + "-DCMAKE_CXX_FLAGS=-std=c++11" + ] ++ + # Maybe with compiler-rt this won't be needed? + (stdenv.lib.optional stdenv.isLinux "-DGCC_INSTALL_PREFIX=${gcc}") ++ + (stdenv.lib.optional (stdenv.cc.libc != null) "-DC_INCLUDE_DIRS=${stdenv.cc.libc}/include"); + + patches = [ ./purity.patch ]; + + postPatch = '' + sed -i -e 's/Args.hasArg(options::OPT_nostdlibinc)/true/' lib/Driver/Tools.cpp + sed -i -e 's/DriverArgs.hasArg(options::OPT_nostdlibinc)/true/' lib/Driver/ToolChains.cpp + ''; + + # Clang expects to find LLVMgold in its own prefix + # Clang expects to find sanitizer libraries in its own prefix + postInstall = '' + ln -sv ${llvm}/lib/LLVMgold.so $out/lib + ln -sv ${llvm}/lib/clang/${release_version}/lib $out/lib/clang/${release_version}/ + ln -sv $out/bin/clang $out/bin/cpp + ''; + + enableParallelBuilding = true; + + passthru = { + lib = self; # compatibility with gcc, so that `stdenv.cc.cc.lib` works on both + isClang = true; + } // stdenv.lib.optionalAttrs stdenv.isLinux { + inherit gcc; + }; + + meta = { + description = "A c, c++, objective-c, and objective-c++ frontend for the llvm compiler"; + homepage = http://llvm.org/; + license = stdenv.lib.licenses.ncsa; + platforms = stdenv.lib.platforms.all; + }; + }; +in self diff --git a/pkgs/development/compilers/llvm/4.0/clang/purity.patch b/pkgs/development/compilers/llvm/4.0/clang/purity.patch new file mode 100644 index 000000000000..f5fb4c73af47 --- /dev/null +++ b/pkgs/development/compilers/llvm/4.0/clang/purity.patch @@ -0,0 +1,16 @@ +--- a/lib/Driver/Tools.cpp 2016-08-25 15:48:05.187553443 +0200 ++++ b/lib/Driver/Tools.cpp 2016-08-25 15:48:47.534468882 +0200 +@@ -9420,13 +9420,6 @@ + if (!Args.hasArg(options::OPT_static)) { + if (Args.hasArg(options::OPT_rdynamic)) + CmdArgs.push_back("-export-dynamic"); +- +- if (!Args.hasArg(options::OPT_shared)) { +- const std::string Loader = +- D.DyldPrefix + ToolChain.getDynamicLinker(Args); +- CmdArgs.push_back("-dynamic-linker"); +- CmdArgs.push_back(Args.MakeArgString(Loader)); +- } + } + + CmdArgs.push_back("-o"); diff --git a/pkgs/development/compilers/llvm/4.0/default.nix b/pkgs/development/compilers/llvm/4.0/default.nix new file mode 100644 index 000000000000..f407b2cdc9f5 --- /dev/null +++ b/pkgs/development/compilers/llvm/4.0/default.nix @@ -0,0 +1,51 @@ +{ newScope, stdenv, isl, fetchurl, overrideCC, wrapCC, darwin, ccWrapperFun }: +let + callPackage = newScope (self // { inherit stdenv isl release_version version fetch; }); + + release_version = "4.0.0"; + rc = "rc2"; + version = "${release_version}${rc}"; + + fetch = name: sha256: fetchurl { + url = "http://llvm.org/pre-releases/${release_version}/${rc}/${name}-${version}.src.tar.xz"; + # Once 4.0 is released, use this instead: + # url = "http://llvm.org/releases/${release-version}/${name}-${version}.src.tar.xz"; + inherit sha256; + }; + + compiler-rt_src = fetch "compiler-rt" "07i098rj41h1sq2f30d6161924zr5yd9gx5kans79p7akxxgc0jr"; + clang-tools-extra_src = fetch "clang-tools-extra" "0ypvkv55pw88iaixib29sgz44d4pfs166vpswnrrbkqlhz92ns0z"; + + self = { + llvm = callPackage ./llvm.nix { + inherit compiler-rt_src stdenv; + }; + + clang-unwrapped = callPackage ./clang { + inherit clang-tools-extra_src stdenv; + }; + + clang = wrapCC self.clang-unwrapped; + + libcxxClang = ccWrapperFun { + cc = self.clang-unwrapped; + isClang = true; + inherit (self) stdenv; + /* FIXME is this right? */ + inherit (stdenv.cc) libc nativeTools nativeLibc; + extraPackages = [ self.libcxx self.libcxxabi ]; + }; + + stdenv = overrideCC stdenv self.clang; + + libcxxStdenv = overrideCC stdenv self.libcxxClang; + + lld = callPackage ./lld.nix {}; + + lldb = callPackage ./lldb.nix {}; + + libcxx = callPackage ./libc++ {}; + + libcxxabi = callPackage ./libc++abi.nix {}; + }; +in self diff --git a/pkgs/development/compilers/llvm/4.0/libc++/default.nix b/pkgs/development/compilers/llvm/4.0/libc++/default.nix new file mode 100644 index 000000000000..9f950e601b21 --- /dev/null +++ b/pkgs/development/compilers/llvm/4.0/libc++/default.nix @@ -0,0 +1,42 @@ +{ lib, stdenv, fetch, cmake, llvm, libcxxabi, fixDarwinDylibNames, version }: + +stdenv.mkDerivation rec { + name = "libc++-${version}"; + + src = fetch "libcxx" "130clvfffqml8hbnlvr596nfjk18n6ifxab27xl66nxhq99wccfn"; + + postUnpack = '' + unpackFile ${libcxxabi.src} + export LIBCXXABI_INCLUDE_DIR="$PWD/$(ls -d libcxxabi-${version}*)/include" + ''; + + preConfigure = '' + # Get headers from the cxxabi source so we can see private headers not installed by the cxxabi package + cmakeFlagsArray=($cmakeFlagsArray -DLIBCXX_CXX_ABI_INCLUDE_PATHS="$LIBCXXABI_INCLUDE_DIR") + ''; + + patchPhase = '' + substituteInPlace lib/CMakeLists.txt --replace "/usr/lib/libc++" "\''${LIBCXX_LIBCXXABI_LIB_PATH}/libc++" + ''; + + buildInputs = [ cmake llvm libcxxabi ] ++ lib.optional stdenv.isDarwin fixDarwinDylibNames; + + cmakeFlags = [ + "-DLIBCXX_LIBCXXABI_LIB_PATH=${libcxxabi}/lib" + "-DLIBCXX_LIBCPPABI_VERSION=2" + "-DLIBCXX_CXX_ABI=libcxxabi" + ]; + + enableParallelBuilding = true; + + linkCxxAbi = stdenv.isLinux; + + setupHook = ./setup-hook.sh; + + meta = { + homepage = http://libcxx.llvm.org/; + description = "A new implementation of the C++ standard library, targeting C++11"; + license = with stdenv.lib.licenses; [ ncsa mit ]; + platforms = stdenv.lib.platforms.unix; + }; +} diff --git a/pkgs/development/compilers/llvm/4.0/libc++/setup-hook.sh b/pkgs/development/compilers/llvm/4.0/libc++/setup-hook.sh new file mode 100644 index 000000000000..9022fced6ecf --- /dev/null +++ b/pkgs/development/compilers/llvm/4.0/libc++/setup-hook.sh @@ -0,0 +1,3 @@ +linkCxxAbi="@linkCxxAbi@" +export NIX_CXXSTDLIB_COMPILE+=" -isystem @out@/include/c++/v1" +export NIX_CXXSTDLIB_LINK=" -stdlib=libc++${linkCxxAbi:+" -lc++abi"}" diff --git a/pkgs/development/compilers/llvm/4.0/libc++abi.nix b/pkgs/development/compilers/llvm/4.0/libc++abi.nix new file mode 100644 index 000000000000..362663ed443f --- /dev/null +++ b/pkgs/development/compilers/llvm/4.0/libc++abi.nix @@ -0,0 +1,46 @@ +{ stdenv, cmake, fetch, libcxx, libunwind, llvm, version }: + +stdenv.mkDerivation { + name = "libc++abi-${version}"; + + src = fetch "libcxxabi" "09hlqlbxpnqi3449nrk43khp4jgd34xwx406mw6igwl8a673pa85"; + + buildInputs = [ cmake ] ++ stdenv.lib.optional (!stdenv.isDarwin && !stdenv.isFreeBSD) libunwind; + + postUnpack = '' + unpackFile ${libcxx.src} + unpackFile ${llvm.src} + export cmakeFlags="-DLLVM_PATH=$PWD/$(ls -d llvm-*) -DLIBCXXABI_LIBCXX_PATH=$PWD/$(ls -d libcxx-*)" + '' + stdenv.lib.optionalString stdenv.isDarwin '' + export TRIPLE=x86_64-apple-darwin + ''; + + installPhase = if stdenv.isDarwin + then '' + for file in lib/*.dylib; do + # this should be done in CMake, but having trouble figuring out + # the magic combination of necessary CMake variables + # if you fancy a try, take a look at + # http://www.cmake.org/Wiki/CMake_RPATH_handling + install_name_tool -id $out/$file $file + done + make install + install -d 755 $out/include + install -m 644 ../include/*.h $out/include + '' + else '' + install -d -m 755 $out/include $out/lib + install -m 644 lib/libc++abi.so.1.0 $out/lib + install -m 644 ../include/cxxabi.h $out/include + ln -s libc++abi.so.1.0 $out/lib/libc++abi.so + ln -s libc++abi.so.1.0 $out/lib/libc++abi.so.1 + ''; + + meta = { + homepage = http://libcxxabi.llvm.org/; + description = "A new implementation of low level support for a standard C++ library"; + license = with stdenv.lib.licenses; [ ncsa mit ]; + maintainers = with stdenv.lib.maintainers; [ vlstill ]; + platforms = stdenv.lib.platforms.unix; + }; +} diff --git a/pkgs/development/compilers/llvm/4.0/lld.nix b/pkgs/development/compilers/llvm/4.0/lld.nix new file mode 100644 index 000000000000..004230ca81ab --- /dev/null +++ b/pkgs/development/compilers/llvm/4.0/lld.nix @@ -0,0 +1,32 @@ +{ stdenv +, fetch +, cmake +, zlib +, llvm +, python +, version +}: + +stdenv.mkDerivation { + name = "lld-${version}"; + + src = fetch "lld" "144vmb13800s33xgd18321lrviw21mjx5dphzszjgvizn4a1sf1p"; + + buildInputs = [ cmake llvm ]; + + outputs = [ "out" "dev" ]; + + enableParallelBuilding = true; + + postInstall = '' + moveToOutput include "$dev" + moveToOutput lib "$dev" + ''; + + meta = { + description = "The LLVM Linker"; + homepage = http://lld.llvm.org/; + license = stdenv.lib.licenses.ncsa; + platforms = stdenv.lib.platforms.all; + }; +} diff --git a/pkgs/development/compilers/llvm/4.0/lldb.nix b/pkgs/development/compilers/llvm/4.0/lldb.nix new file mode 100644 index 000000000000..f37e6fdfafc2 --- /dev/null +++ b/pkgs/development/compilers/llvm/4.0/lldb.nix @@ -0,0 +1,50 @@ +{ stdenv +, fetch +, cmake +, zlib +, ncurses +, swig +, which +, libedit +, libxml2 +, llvm +, clang-unwrapped +, python +, version +, darwin +}: + +stdenv.mkDerivation { + name = "lldb-${version}"; + + src = fetch "lldb" "0g3il7bz1b0xbcm85c6r64vgn8ppxigi1s39s3xzga4pkllf7k07"; + + patchPhase = '' + # Fix up various paths that assume llvm and clang are installed in the same place + sed -i 's,".*ClangConfig.cmake","${clang-unwrapped}/lib/cmake/clang/ClangConfig.cmake",' \ + cmake/modules/LLDBStandalone.cmake + sed -i 's,".*tools/clang/include","${clang-unwrapped}/include",' \ + cmake/modules/LLDBStandalone.cmake + sed -i 's,"$.LLVM_LIBRARY_DIR.",${llvm}/lib ${clang-unwrapped}/lib,' \ + cmake/modules/LLDBStandalone.cmake + ''; + + buildInputs = [ cmake python which swig ncurses zlib libedit libxml2 llvm ] + ++ stdenv.lib.optionals stdenv.isDarwin [ darwin.libobjc darwin.apple_sdk.libs.xpc ]; + + CXXFLAGS = "-fno-rtti"; + hardeningDisable = [ "format" ]; + + cmakeFlags = [ + "-DLLDB_DISABLE_LIBEDIT=ON" + ]; + + enableParallelBuilding = true; + + meta = with stdenv.lib; { + description = "A next-generation high-performance debugger"; + homepage = http://llvm.org/; + license = licenses.ncsa; + platforms = platforms.allBut platforms.darwin; + }; +} diff --git a/pkgs/development/compilers/llvm/4.0/llvm-outputs.patch b/pkgs/development/compilers/llvm/4.0/llvm-outputs.patch new file mode 100644 index 000000000000..40096fa3497f --- /dev/null +++ b/pkgs/development/compilers/llvm/4.0/llvm-outputs.patch @@ -0,0 +1,26 @@ +diff --git a/tools/llvm-config/llvm-config.cpp b/tools/llvm-config/llvm-config.cpp +index 94d426b..37f7794 100644 +--- a/tools/llvm-config/llvm-config.cpp ++++ b/tools/llvm-config/llvm-config.cpp +@@ -333,6 +333,21 @@ int main(int argc, char **argv) { + ActiveIncludeOption = "-I" + ActiveIncludeDir; + } + ++ /// Nix-specific multiple-output handling: override ActiveLibDir if --link-shared ++ if (!IsInDevelopmentTree) { ++ bool WantShared = true; ++ for (int i = 1; i < argc; ++i) { ++ StringRef Arg = argv[i]; ++ if (Arg == "--link-shared") ++ WantShared = true; ++ else if (Arg == "--link-static") ++ WantShared = false; // the last one wins ++ } ++ ++ if (WantShared) ++ ActiveLibDir = std::string("@lib@") + "/lib" + LLVM_LIBDIR_SUFFIX; ++ } ++ + /// We only use `shared library` mode in cases where the static library form + /// of the components provided are not available; note however that this is + /// skipped if we're run from within the build dir. However, once installed, diff --git a/pkgs/development/compilers/llvm/4.0/llvm.nix b/pkgs/development/compilers/llvm/4.0/llvm.nix new file mode 100644 index 000000000000..d54390e5ee8d --- /dev/null +++ b/pkgs/development/compilers/llvm/4.0/llvm.nix @@ -0,0 +1,117 @@ +{ stdenv +, fetch +, fetchpatch +, perl +, groff +, cmake +, python +, libffi +, binutils +, libxml2 +, valgrind +, ncurses +, version +, release_version +, zlib +, compiler-rt_src +, libcxxabi +, debugVersion ? false +, enableSharedLibraries ? true +, darwin +}: + +let + src = fetch "llvm" "1qfvvblca2aa5shamz66132k30hmpq2mkpfn172xzzlm6znzlmr2"; + shlib = if stdenv.isDarwin then "dylib" else "so"; + + # Used when creating a version-suffixed symlink of libLLVM.dylib + shortVersion = with stdenv.lib; + concatStringsSep "." (take 2 (splitString "." release_version)); +in stdenv.mkDerivation rec { + name = "llvm-${version}"; + + unpackPhase = '' + unpackFile ${src} + mv llvm-${version}* llvm + sourceRoot=$PWD/llvm + unpackFile ${compiler-rt_src} + mv compiler-rt-* $sourceRoot/projects/compiler-rt + ''; + + outputs = [ "out" ] ++ stdenv.lib.optional enableSharedLibraries "lib"; + + buildInputs = [ perl groff cmake libxml2 python libffi ] + ++ stdenv.lib.optionals stdenv.isDarwin + [ libcxxabi darwin.cctools darwin.apple_sdk.libs.xpc ]; + + propagatedBuildInputs = [ ncurses zlib ]; + + # hacky fix: New LLVM releases require a newer OS X SDK than + # 10.9. This is a temporary measure until nixpkgs darwin support is + # updated. + postPatch = stdenv.lib.optionalString stdenv.isDarwin '' + sed -i 's/os_trace(\(.*\)");$/printf(\1\\n");/g' ./projects/compiler-rt/lib/sanitizer_common/sanitizer_mac.cc + '' + # Patch llvm-config to return correct library path based on --link-{shared,static}. + + stdenv.lib.optionalString (enableSharedLibraries) '' + substitute '${./llvm-outputs.patch}' ./llvm-outputs.patch --subst-var lib + patch -p1 < ./llvm-outputs.patch + ''; + + # hacky fix: created binaries need to be run before installation + preBuild = '' + mkdir -p $out/ + ln -sv $PWD/lib $out + ''; + + cmakeFlags = with stdenv; [ + "-DCMAKE_BUILD_TYPE=${if debugVersion then "Debug" else "Release"}" + "-DLLVM_INSTALL_UTILS=ON" # Needed by rustc + "-DLLVM_BUILD_TESTS=ON" + "-DLLVM_ENABLE_FFI=ON" + "-DLLVM_ENABLE_RTTI=ON" + "-DCOMPILER_RT_INCLUDE_TESTS=OFF" # FIXME: requires clang source code + ] ++ stdenv.lib.optional enableSharedLibraries [ + "-DLLVM_LINK_LLVM_DYLIB=ON" + ] ++ stdenv.lib.optional (!isDarwin) + "-DLLVM_BINUTILS_INCDIR=${binutils.dev}/include" + ++ stdenv.lib.optionals (isDarwin) [ + "-DLLVM_ENABLE_LIBCXX=ON" + "-DCAN_TARGET_i386=false" + "-DCMAKE_LIBTOOL=${darwin.cctools}/bin/libtool" + ]; + + postBuild = '' + rm -fR $out + + paxmark m bin/{lli,llvm-rtdyld} + ''; + + postInstall = "" + + stdenv.lib.optionalString (enableSharedLibraries) '' + moveToOutput "lib/libLLVM-*" "$lib" + moveToOutput "lib/libLLVM.${shlib}" "$lib" + substituteInPlace "$out/lib/cmake/llvm/LLVMExports-release.cmake" \ + --replace "\''${_IMPORT_PREFIX}/lib/libLLVM-" "$lib/lib/libLLVM-" + '' + + stdenv.lib.optionalString (stdenv.isDarwin && enableSharedLibraries) '' + substituteInPlace "$out/lib/cmake/llvm/LLVMExports-release.cmake" \ + --replace "\''${_IMPORT_PREFIX}/lib/libLLVM.dylib" "$lib/lib/libLLVM.dylib" + install_name_tool -id $lib/lib/libLLVM.dylib $lib/lib/libLLVM.dylib + install_name_tool -change @rpath/libLLVM.dylib $lib/lib/libLLVM.dylib $out/bin/llvm-config + ln -s $lib/lib/libLLVM.dylib $lib/lib/libLLVM-${shortVersion}.dylib + ln -s $lib/lib/libLLVM.dylib $lib/lib/libLLVM-${release_version}.dylib + ''; + + enableParallelBuilding = true; + + passthru.src = src; + + meta = { + description = "Collection of modular and reusable compiler and toolchain technologies"; + homepage = http://llvm.org/; + license = stdenv.lib.licenses.ncsa; + maintainers = with stdenv.lib.maintainers; [ lovek323 raskin viric ]; + platforms = stdenv.lib.platforms.all; + }; +} diff --git a/pkgs/development/haskell-modules/configuration-common.nix b/pkgs/development/haskell-modules/configuration-common.nix index e1cf22155a58..fc0edb9e6f3f 100644 --- a/pkgs/development/haskell-modules/configuration-common.nix +++ b/pkgs/development/haskell-modules/configuration-common.nix @@ -689,6 +689,10 @@ self: super: { # Tools that use gtk2hs-buildtools now depend on them in a custom-setup stanza cairo = addBuildTool super.cairo self.gtk2hs-buildtools; pango = disableHardening (addBuildTool super.pango self.gtk2hs-buildtools) ["fortify"]; + gtk = + if pkgs.stdenv.isDarwin + then appendConfigureFlag super.gtk "-fhave-quartz-gtk" + else super.gtk; # https://github.com/commercialhaskell/stack/issues/3001 stack = doJailbreak super.stack; @@ -859,6 +863,9 @@ self: super: { # https://github.com/lambdabot/lambdabot/issues/158 lambdabot-core = doJailbreak super.lambdabot-core; + # https://github.com/lambdabot/lambdabot/issues/159 + lambdabot = doJailbreak super.lambdabot; + # https://github.com/jswebtools/language-ecmascript/pull/81 language-ecmascript = doJailbreak super.language-ecmascript; } diff --git a/pkgs/development/haskell-modules/default.nix b/pkgs/development/haskell-modules/default.nix index d2ecc3381287..15a4ed42e8c0 100644 --- a/pkgs/development/haskell-modules/default.nix +++ b/pkgs/development/haskell-modules/default.nix @@ -6,12 +6,13 @@ let - inherit (stdenv.lib) fix' extends; + inherit (stdenv.lib) fix' extends makeOverridable; + inherit (import ./lib.nix { inherit pkgs; }) overrideCabal; haskellPackages = self: let - mkDerivation = pkgs.callPackage ./generic-builder.nix { + mkDerivationImpl = pkgs.callPackage ./generic-builder.nix { inherit stdenv; inherit (pkgs) fetchurl pkgconfig glibcLocales coreutils gnugrep gnused; jailbreak-cabal = if (self.ghc.cross or null) != null @@ -37,9 +38,7 @@ let }); }; - overrideCabal = drv: f: drv.override (args: args // { - mkDerivation = drv: args.mkDerivation (drv // f drv); - }); + mkDerivation = makeOverridable mkDerivationImpl; callPackageWithScope = scope: drv: args: (stdenv.lib.callPackageWith scope drv args) // { overrideScope = f: callPackageWithScope (mkScope (fix' (extends f scope.__unfix__))) drv args; diff --git a/pkgs/development/haskell-modules/generic-builder.nix b/pkgs/development/haskell-modules/generic-builder.nix index 1998b090687d..a22d2c67dfda 100644 --- a/pkgs/development/haskell-modules/generic-builder.nix +++ b/pkgs/development/haskell-modules/generic-builder.nix @@ -9,10 +9,11 @@ , src ? fetchurl { url = "mirror://hackage/${pname}-${version}.tar.gz"; inherit sha256; } , buildDepends ? [], setupHaskellDepends ? [], libraryHaskellDepends ? [], executableHaskellDepends ? [] , buildTarget ? "" -, buildTools ? [], libraryToolDepends ? [], executableToolDepends ? [], testToolDepends ? [] +, buildTools ? [], libraryToolDepends ? [], executableToolDepends ? [], testToolDepends ? [], benchToolDepends ? [] , configureFlags ? [] , description ? "" , doCheck ? !isCross && (stdenv.lib.versionOlder "7.4" ghc.version) +, doBench ? false , doHoogle ? true , editedCabalFile ? null , enableLibraryProfiling ? false @@ -36,8 +37,9 @@ # TODO Do we care about haddock when cross-compiling? , doHaddock ? !isCross && (!stdenv.isDarwin || stdenv.lib.versionAtLeast ghc.version "7.8") , passthru ? {} -, pkgconfigDepends ? [], libraryPkgconfigDepends ? [], executablePkgconfigDepends ? [], testPkgconfigDepends ? [] +, pkgconfigDepends ? [], libraryPkgconfigDepends ? [], executablePkgconfigDepends ? [], testPkgconfigDepends ? [], benchPkgconfigDepends ? [] , testDepends ? [], testHaskellDepends ? [], testSystemDepends ? [] +, benchDepends ? [], benchHaskellDepends ? [], benchSystemDepends ? [] , testTarget ? "" , broken ? false , preCompileBuildDriver ? "", postCompileBuildDriver ? "" @@ -139,13 +141,14 @@ let isSystemPkg = x: !isHaskellPkg x; allPkgconfigDepends = pkgconfigDepends ++ libraryPkgconfigDepends ++ executablePkgconfigDepends ++ - optionals doCheck testPkgconfigDepends; + optionals doCheck testPkgconfigDepends ++ optionals doBench benchPkgconfigDepends; propagatedBuildInputs = buildDepends ++ libraryHaskellDepends ++ executableHaskellDepends; otherBuildInputs = extraLibraries ++ librarySystemDepends ++ executableSystemDepends ++ setupHaskellDepends ++ buildTools ++ libraryToolDepends ++ executableToolDepends ++ optionals (allPkgconfigDepends != []) ([pkgconfig] ++ allPkgconfigDepends) ++ - optionals doCheck (testDepends ++ testHaskellDepends ++ testSystemDepends ++ testToolDepends); + optionals doCheck (testDepends ++ testHaskellDepends ++ testSystemDepends ++ testToolDepends) ++ + optionals doBench (benchDepends ++ benchHaskellDepends ++ benchSystemDepends ++ benchToolDepends); allBuildInputs = propagatedBuildInputs ++ otherBuildInputs; haskellBuildInputs = stdenv.lib.filter isHaskellPkg allBuildInputs; @@ -341,6 +344,7 @@ stdenv.mkDerivation ({ // optionalAttrs (preBuild != "") { inherit preBuild; } // optionalAttrs (postBuild != "") { inherit postBuild; } // optionalAttrs (doCheck) { inherit doCheck; } +// optionalAttrs (doBench) { inherit doBench; } // optionalAttrs (checkPhase != "") { inherit checkPhase; } // optionalAttrs (preCheck != "") { inherit preCheck; } // optionalAttrs (postCheck != "") { inherit postCheck; } diff --git a/pkgs/development/haskell-modules/hackage-packages.nix b/pkgs/development/haskell-modules/hackage-packages.nix index 6feed8f5c987..d31dc82822cb 100644 --- a/pkgs/development/haskell-modules/hackage-packages.nix +++ b/pkgs/development/haskell-modules/hackage-packages.nix @@ -69335,7 +69335,7 @@ self: { "gi-gstaudio" = callPackage ({ mkDerivation, base, bytestring, Cabal, containers, gi-glib , gi-gobject, gi-gst, gi-gstbase, gobjectIntrospection - , gst_plugins_base, haskell-gi, haskell-gi-base, text, transformers + , gst-plugins-base, haskell-gi, haskell-gi-base, text, transformers }: mkDerivation { pname = "gi-gstaudio"; @@ -69347,18 +69347,18 @@ self: { haskell-gi haskell-gi-base text transformers ]; librarySystemDepends = [ gobjectIntrospection ]; - libraryPkgconfigDepends = [ gst_plugins_base ]; + libraryPkgconfigDepends = [ gst-plugins-base ]; doHaddock = false; homepage = "https://github.com/haskell-gi/haskell-gi"; description = "GStreamerAudio bindings"; license = stdenv.lib.licenses.lgpl21; hydraPlatforms = stdenv.lib.platforms.none; }) {inherit (pkgs) gobjectIntrospection; - gst_plugins_base = pkgs.gst_all_1.gst-plugins-base;}; + gst-plugins-base = pkgs.gst_all_1.gst-plugins-base;}; "gi-gstbase" = callPackage ({ mkDerivation, base, bytestring, Cabal, containers, gi-glib - , gi-gobject, gi-gst, gobjectIntrospection, gst_plugins_base + , gi-gobject, gi-gst, gobjectIntrospection, gst-plugins-base , haskell-gi, haskell-gi-base, text, transformers }: mkDerivation { @@ -69371,19 +69371,19 @@ self: { haskell-gi-base text transformers ]; librarySystemDepends = [ gobjectIntrospection ]; - libraryPkgconfigDepends = [ gst_plugins_base ]; + libraryPkgconfigDepends = [ gst-plugins-base ]; doHaddock = false; homepage = "https://github.com/haskell-gi/haskell-gi"; description = "GStreamerBase bindings"; license = stdenv.lib.licenses.lgpl21; hydraPlatforms = stdenv.lib.platforms.none; }) {inherit (pkgs) gobjectIntrospection; - gst_plugins_base = pkgs.gst_all_1.gst-plugins-base;}; + gst-plugins-base = pkgs.gst_all_1.gst-plugins-base;}; "gi-gstvideo" = callPackage ({ mkDerivation, base, bytestring, Cabal, containers, gi-glib , gi-gobject, gi-gst, gi-gstbase, gobjectIntrospection - , gst_plugins_base, haskell-gi, haskell-gi-base, text, transformers + , gst-plugins-base, haskell-gi, haskell-gi-base, text, transformers }: mkDerivation { pname = "gi-gstvideo"; @@ -69395,14 +69395,14 @@ self: { haskell-gi haskell-gi-base text transformers ]; librarySystemDepends = [ gobjectIntrospection ]; - libraryPkgconfigDepends = [ gst_plugins_base ]; + libraryPkgconfigDepends = [ gst-plugins-base ]; doHaddock = false; homepage = "https://github.com/haskell-gi/haskell-gi"; description = "GStreamerVideo bindings"; license = stdenv.lib.licenses.lgpl21; hydraPlatforms = stdenv.lib.platforms.none; }) {inherit (pkgs) gobjectIntrospection; - gst_plugins_base = pkgs.gst_all_1.gst-plugins-base;}; + gst-plugins-base = pkgs.gst_all_1.gst-plugins-base;}; "gi-gtk" = callPackage ({ mkDerivation, base, bytestring, Cabal, containers, gi-atk @@ -76588,7 +76588,7 @@ self: { "gstreamer" = callPackage ({ mkDerivation, array, base, bytestring, Cabal, directory, glib - , gst_plugins_base, gstreamer, gtk2hs-buildtools, mtl + , gst-plugins-base, gstreamer, gtk2hs-buildtools, mtl }: mkDerivation { pname = "gstreamer"; @@ -76598,11 +76598,11 @@ self: { libraryHaskellDepends = [ array base bytestring directory glib mtl ]; - libraryPkgconfigDepends = [ gst_plugins_base gstreamer ]; + libraryPkgconfigDepends = [ gst-plugins-base gstreamer ]; homepage = "http://projects.haskell.org/gtk2hs/"; description = "Binding to the GStreamer open source multimedia framework"; license = stdenv.lib.licenses.lgpl21; - }) {inherit (pkgs) gst_plugins_base; inherit (pkgs) gstreamer;}; + }) {inherit (pkgs) gst-plugins-base; inherit (pkgs) gstreamer;}; "gt-tools" = callPackage ({ mkDerivation, base, containers, extensible-exceptions, haskeline diff --git a/pkgs/development/haskell-modules/lib.nix b/pkgs/development/haskell-modules/lib.nix index cc9daf336b02..ab817b7b2a16 100644 --- a/pkgs/development/haskell-modules/lib.nix +++ b/pkgs/development/haskell-modules/lib.nix @@ -3,7 +3,7 @@ rec { overrideCabal = drv: f: (drv.override (args: args // { - mkDerivation = drv: args.mkDerivation (drv // f drv); + mkDerivation = drv: (args.mkDerivation drv).override f; })) // { overrideScope = scope: overrideCabal (drv.overrideScope scope) f; }; diff --git a/pkgs/development/interpreters/supercollider/default.nix b/pkgs/development/interpreters/supercollider/default.nix index dcb1f8e7062e..f32cb9db02a8 100644 --- a/pkgs/development/interpreters/supercollider/default.nix +++ b/pkgs/development/interpreters/supercollider/default.nix @@ -9,12 +9,12 @@ in stdenv.mkDerivation rec { name = "supercollider-${version}"; - version = "3.7.2"; + version = "3.8.0"; src = fetchurl { url = "https://github.com/supercollider/supercollider/releases/download/Version-${version}/SuperCollider-${version}-Source-linux.tar.bz2"; - sha256 = "1mybxcnl7flliz74kdfnvh18v5dwd9zbdsw2kc7wpl4idcly1n0s"; + sha256 = "053b2xc2x1sczvlb41w6iciqlwy0zyfiv3jrynx4f8jgd6mizsm6"; }; hardeningDisable = [ "stackprotector" ]; diff --git a/pkgs/development/libraries/appstream-glib/default.nix b/pkgs/development/libraries/appstream-glib/default.nix index caaa826ae67d..03853192531e 100644 --- a/pkgs/development/libraries/appstream-glib/default.nix +++ b/pkgs/development/libraries/appstream-glib/default.nix @@ -17,8 +17,8 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ autoconf automake libtool pkgconfig intltool autoconf-archive ]; buildInputs = [ glib gtk_doc gettext sqlite libsoup gcab attr acl docbook_xsl libuuid json_glib - libarchive libyaml gtk3 gobjectIntrospection ]; - + libarchive libyaml gobjectIntrospection ]; + propagatedBuildInputs = [ gtk3 ]; configureScript = "./autogen.sh"; meta = with stdenv.lib; { diff --git a/pkgs/development/libraries/faac/default.nix b/pkgs/development/libraries/faac/default.nix index 1ab01033f4df..abbe07224b56 100644 --- a/pkgs/development/libraries/faac/default.nix +++ b/pkgs/development/libraries/faac/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchurl +{ stdenv, fetchurl, fetchpatch, autoreconfHook , mp4v2Support ? true, mp4v2 ? null , drmSupport ? false # Digital Radio Mondiale }: @@ -15,12 +15,28 @@ stdenv.mkDerivation rec { sha256 = "1pqr7nf6p2r283n0yby2czd3iy159gz8rfinkis7vcfgyjci2565"; }; + patches = [ + (fetchpatch { + name = "faac-mp4v2-1.9.patch"; + url = "https://git.archlinux.org/svntogit/packages.git/plain/trunk/mp4v2-1.9.patch?h=packages/faac"; + sha256 = "1pja822zw9q3cg8bjkw5z0bpxsk4q92qix26zpiqbvi7vg314hyc"; + }) + (fetchpatch { + name = "faac-mp4v2-2.0.0.patch"; + url = "https://git.archlinux.org/svntogit/packages.git/plain/trunk/mp4v2-2.0.0.patch?h=packages/faac"; + sha256 = "07kmkrl0600rs01xqpkkw9n8p1215n485xqf8hwimp60dw3vc0wn"; + addPrefixes = true; + }) + ]; + configureFlags = [ ] - ++ optional mp4v2Support "--with-mp4v2" + ++ optional mp4v2Support "--with-external-mp4v2" ++ optional drmSupport "--enable-drm"; hardeningDisable = [ "format" ]; + nativeBuildInputs = [ autoreconfHook ]; + buildInputs = [ ] ++ optional mp4v2Support mp4v2; diff --git a/pkgs/development/libraries/farsight2/default.nix b/pkgs/development/libraries/farsight2/default.nix index b7a17c82bebd..9ff57257e03b 100644 --- a/pkgs/development/libraries/farsight2/default.nix +++ b/pkgs/development/libraries/farsight2/default.nix @@ -1,5 +1,5 @@ -{ stdenv, fetchurl, libnice, pkgconfig, python2Packages, gstreamer, gst_plugins_base -, gst_python, gupnp_igd }: +{ stdenv, fetchurl, libnice, pkgconfig, python2Packages, gstreamer, gst-plugins-base +, gst-python, gupnp_igd }: let inherit (python2Packages) python pygobject2; @@ -11,11 +11,11 @@ in stdenv.mkDerivation rec { sha256 = "16qz4x14rdycm4nrn5wx6k2y22fzrazsbmihrxdwafx9cyf23kjm"; }; - buildInputs = [ libnice python pygobject2 gst_python gupnp_igd ]; + buildInputs = [ libnice python pygobject2 gst-python gupnp_igd ]; nativeBuildInputs = [ pkgconfig ]; - propagatedBuildInputs = [ gstreamer gst_plugins_base ]; + propagatedBuildInputs = [ gstreamer gst-plugins-base ]; meta = { homepage = http://farsight.freedesktop.org/wiki/; diff --git a/pkgs/development/libraries/fftw/default.nix b/pkgs/development/libraries/fftw/default.nix index e6c55ed15755..4bbc515831e6 100644 --- a/pkgs/development/libraries/fftw/default.nix +++ b/pkgs/development/libraries/fftw/default.nix @@ -4,14 +4,14 @@ with lib; assert elem precision [ "single" "double" "long-double" "quad-precision" ]; -let version = "3.3.5"; in +let version = "3.3.6-pl1"; in stdenv.mkDerivation rec { name = "fftw-${precision}-${version}"; src = fetchurl { url = "ftp://ftp.fftw.org/pub/fftw/fftw-${version}.tar.gz"; - sha256 = "1kwbx92ps0r7s2mqy7lxbxanslxdzj7dp7r7gmdkzv1j8yqf3kwf"; + sha256 = "0g8qk98lgq770ixdf7n36yd5xjsgm2v3wzvnphwmhy6r4y2amx0y"; }; outputs = [ "out" "dev" "doc" ]; # it's dev-doc only diff --git a/pkgs/development/libraries/gstreamer/bad/default.nix b/pkgs/development/libraries/gstreamer/bad/default.nix index f0e88551169d..1125bb7bb8ab 100644 --- a/pkgs/development/libraries/gstreamer/bad/default.nix +++ b/pkgs/development/libraries/gstreamer/bad/default.nix @@ -14,7 +14,7 @@ let inherit (stdenv.lib) optional optionalString; in stdenv.mkDerivation rec { - name = "gst-plugins-bad-1.10.3"; + name = "gst-plugins-bad-1.10.4"; meta = with stdenv.lib; { description = "Gstreamer Bad Plugins"; @@ -31,7 +31,7 @@ stdenv.mkDerivation rec { src = fetchurl { url = "${meta.homepage}/src/gst-plugins-bad/${name}.tar.xz"; - sha256 = "1rwla1p57yzygb68z2xk5l5kvqzj5w3nxq0davkwk139zd8r6294"; + sha256 = "0rk9rlzf2b0hjw5hwbadz53yh4ls7vm3w3cshsa3n8isdd8axp93"; }; outputs = [ "out" "dev" ]; diff --git a/pkgs/development/libraries/gstreamer/base/default.nix b/pkgs/development/libraries/gstreamer/base/default.nix index ecb431091adf..960805cdcfc9 100644 --- a/pkgs/development/libraries/gstreamer/base/default.nix +++ b/pkgs/development/libraries/gstreamer/base/default.nix @@ -4,7 +4,7 @@ }: stdenv.mkDerivation rec { - name = "gst-plugins-base-1.10.3"; + name = "gst-plugins-base-1.10.4"; meta = { description = "Base plugins and helper libraries"; @@ -15,7 +15,7 @@ stdenv.mkDerivation rec { src = fetchurl { url = "${meta.homepage}/src/gst-plugins-base/${name}.tar.xz"; - sha256 = "040pifl4cgsqqz2si4s1y5khj3zwm39w21siagxwp805swbrcag6"; + sha256 = "1dsyjf6rncsbg4rfj40cvf1wwpjj9h3j3c7bh4zp7jylnfv4blpn"; }; outputs = [ "out" "dev" ]; diff --git a/pkgs/development/libraries/gstreamer/core/default.nix b/pkgs/development/libraries/gstreamer/core/default.nix index 72a519ab34fe..54ff189caeff 100644 --- a/pkgs/development/libraries/gstreamer/core/default.nix +++ b/pkgs/development/libraries/gstreamer/core/default.nix @@ -3,7 +3,7 @@ }: stdenv.mkDerivation rec { - name = "gstreamer-1.10.3"; + name = "gstreamer-1.10.4"; meta = { description = "Open source multimedia framework"; @@ -15,7 +15,7 @@ stdenv.mkDerivation rec { src = fetchurl { url = "${meta.homepage}/src/gstreamer/${name}.tar.xz"; - sha256 = "0gdnxg5igbhnpjhrzp31w1ww95j805byqd6mj3x29wli54dxrfc5"; + sha256 = "062jidnw17hkpva6ddygp80gyasyigfkpm1y7w56rk56a2pzbhjh"; }; outputs = [ "out" "dev" ]; diff --git a/pkgs/development/libraries/gstreamer/ges/default.nix b/pkgs/development/libraries/gstreamer/ges/default.nix index ab3a0c00e03c..cf69fa943a27 100644 --- a/pkgs/development/libraries/gstreamer/ges/default.nix +++ b/pkgs/development/libraries/gstreamer/ges/default.nix @@ -3,7 +3,7 @@ }: stdenv.mkDerivation rec { - name = "gstreamer-editing-services-1.10.3"; + name = "gstreamer-editing-services-1.10.4"; meta = with stdenv.lib; { description = "Library for creation of audio/video non-linear editors"; @@ -14,7 +14,7 @@ stdenv.mkDerivation rec { src = fetchurl { url = "${meta.homepage}/src/gstreamer-editing-services/${name}.tar.xz"; - sha256 = "0ax3qbi1m4wcii03ysln3lm8nhw3fr2rd35ndfy4mr4vg2nm5gxw"; + sha256 = "0i11b1rwkjsy9gxrf9vk9lgg8qm60ggfi5lp0ncyh4lxvh16vbgj"; }; outputs = [ "out" "dev" ]; diff --git a/pkgs/development/libraries/gstreamer/good/default.nix b/pkgs/development/libraries/gstreamer/good/default.nix index c0d017fcaead..4d9582d13812 100644 --- a/pkgs/development/libraries/gstreamer/good/default.nix +++ b/pkgs/development/libraries/gstreamer/good/default.nix @@ -10,7 +10,7 @@ let inherit (stdenv.lib) optionals optionalString; in stdenv.mkDerivation rec { - name = "gst-plugins-good-1.10.3"; + name = "gst-plugins-good-1.10.4"; meta = with stdenv.lib; { description = "Gstreamer Good Plugins"; @@ -26,7 +26,7 @@ stdenv.mkDerivation rec { src = fetchurl { url = "${meta.homepage}/src/gst-plugins-good/${name}.tar.xz"; - sha256 = "0mar8ss8bvpz699ql4kgndvna8qsv7kj372py4435ffl6hzfj1sf"; + sha256 = "0zjdwxn83sp9wjp9rxjbyk8kf284g9av7l2v6rjldi586hacd1la"; }; outputs = [ "out" "dev" ]; diff --git a/pkgs/development/libraries/gstreamer/legacy/gnonlin/default.nix b/pkgs/development/libraries/gstreamer/legacy/gnonlin/default.nix index 2e30782f44bb..0e8dfec65f4b 100644 --- a/pkgs/development/libraries/gstreamer/legacy/gnonlin/default.nix +++ b/pkgs/development/libraries/gstreamer/legacy/gnonlin/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchurl, pkgconfig, gst_plugins_base, gstreamer }: +{ stdenv, fetchurl, pkgconfig, gst-plugins-base, gstreamer }: stdenv.mkDerivation rec { name = "gnonlin-0.10.17"; @@ -11,7 +11,7 @@ stdenv.mkDerivation rec { sha256 = "0dc9kvr6i7sh91cyhzlbx2bchwg84rfa4679ccppzjf0y65dv8p4"; }; - buildInputs = [ gst_plugins_base gstreamer pkgconfig ]; + buildInputs = [ gst-plugins-base gstreamer pkgconfig ]; meta = { homepage = "http://gstreamer.freedesktop.org/modules/gnonlin.html"; diff --git a/pkgs/development/libraries/gstreamer/legacy/gst-ffmpeg/default.nix b/pkgs/development/libraries/gstreamer/legacy/gst-ffmpeg/default.nix index 18d483594efb..484075f73f75 100644 --- a/pkgs/development/libraries/gstreamer/legacy/gst-ffmpeg/default.nix +++ b/pkgs/development/libraries/gstreamer/legacy/gst-ffmpeg/default.nix @@ -1,4 +1,4 @@ -{ fetchurl, stdenv, pkgconfig, gst_plugins_base, bzip2, yasm, orc +{ fetchurl, stdenv, pkgconfig, gst-plugins-base, bzip2, yasm, orc , useInternalFfmpeg ? false, ffmpeg ? null }: stdenv.mkDerivation rec { @@ -18,7 +18,7 @@ stdenv.mkDerivation rec { configureFlags = stdenv.lib.optionalString (!useInternalFfmpeg) "--with-system-ffmpeg"; buildInputs = - [ pkgconfig bzip2 gst_plugins_base orc ] + [ pkgconfig bzip2 gst-plugins-base orc ] ++ (if useInternalFfmpeg then [ yasm ] else [ ffmpeg ]); meta = { diff --git a/pkgs/development/libraries/gstreamer/legacy/gst-plugins-bad/default.nix b/pkgs/development/libraries/gstreamer/legacy/gst-plugins-bad/default.nix index 988d1bba258a..fecc77b2a544 100644 --- a/pkgs/development/libraries/gstreamer/legacy/gst-plugins-bad/default.nix +++ b/pkgs/development/libraries/gstreamer/legacy/gst-plugins-bad/default.nix @@ -1,4 +1,4 @@ -{ fetchurl, stdenv, pkgconfig, glib, gstreamer, gst_plugins_base +{ fetchurl, stdenv, pkgconfig, glib, gstreamer, gst-plugins-base , libdvdnav, libdvdread, orc }: stdenv.mkDerivation rec { @@ -13,7 +13,7 @@ stdenv.mkDerivation rec { }; buildInputs = - [ pkgconfig glib gstreamer gst_plugins_base libdvdnav libdvdread orc ]; + [ pkgconfig glib gstreamer gst-plugins-base libdvdnav libdvdread orc ]; enableParallelBuilding = true; diff --git a/pkgs/development/libraries/gstreamer/legacy/gst-plugins-good/default.nix b/pkgs/development/libraries/gstreamer/legacy/gst-plugins-good/default.nix index af6e3be401b0..9339de3d9ed4 100644 --- a/pkgs/development/libraries/gstreamer/legacy/gst-plugins-good/default.nix +++ b/pkgs/development/libraries/gstreamer/legacy/gst-plugins-good/default.nix @@ -1,4 +1,4 @@ -{ fetchurl, stdenv, lib, pkgconfig, gst_plugins_base, aalib, cairo +{ fetchurl, stdenv, lib, pkgconfig, gst-plugins-base, aalib, cairo , flac, libjpeg, zlib, speex, libpng, libdv, libcaca, libvpx , libiec61883, libavc1394, taglib, libpulseaudio, gdk_pixbuf, orc , glib, gstreamer, bzip2, libsoup, libshout, ncurses, libintlOrEmpty @@ -23,7 +23,7 @@ stdenv.mkDerivation rec { configureFlags = [ "--enable-experimental" "--disable-oss" ]; buildInputs = - [ pkgconfig glib gstreamer gst_plugins_base ] + [ pkgconfig glib gstreamer gst-plugins-base ] ++ lib.optional stdenv.isLinux libpulseaudio ++ libintlOrEmpty ++ lib.optionals (!minimalDeps) diff --git a/pkgs/development/libraries/gstreamer/legacy/gst-plugins-ugly/default.nix b/pkgs/development/libraries/gstreamer/legacy/gst-plugins-ugly/default.nix index 8e4e662dc3b3..9863b3e01285 100644 --- a/pkgs/development/libraries/gstreamer/legacy/gst-plugins-ugly/default.nix +++ b/pkgs/development/libraries/gstreamer/legacy/gst-plugins-ugly/default.nix @@ -1,4 +1,4 @@ -{ fetchurl, stdenv, pkgconfig, glib, gstreamer, gst_plugins_base +{ fetchurl, stdenv, pkgconfig, glib, gstreamer, gst-plugins-base , libmad, libdvdread, libmpeg2, libcdio, a52dec, x264, orc, lame, libintlOrEmpty }: stdenv.mkDerivation rec { @@ -13,7 +13,7 @@ stdenv.mkDerivation rec { }; buildInputs = - [ pkgconfig glib gstreamer gst_plugins_base libmad libdvdread a52dec x264 orc lame ] ++ libintlOrEmpty; + [ pkgconfig glib gstreamer gst-plugins-base libmad libdvdread a52dec x264 orc lame ] ++ libintlOrEmpty; NIX_LDFLAGS = if stdenv.isDarwin then "-lintl" else null; diff --git a/pkgs/development/libraries/gstreamer/legacy/gst-python/default.nix b/pkgs/development/libraries/gstreamer/legacy/gst-python/default.nix index d78b50a7821a..fd01aa5c1dce 100644 --- a/pkgs/development/libraries/gstreamer/legacy/gst-python/default.nix +++ b/pkgs/development/libraries/gstreamer/legacy/gst-python/default.nix @@ -1,4 +1,4 @@ -{ fetchurl, stdenv, pkgconfig, python2Packages, gstreamer, gst_plugins_base +{ fetchurl, stdenv, pkgconfig, python2Packages, gstreamer, gst-plugins-base }: let @@ -21,7 +21,7 @@ in stdenv.mkDerivation rec { patches = [ ./disable-testFake.patch ]; buildInputs = - [ pkgconfig gst_plugins_base pygobject2 ] + [ pkgconfig gst-plugins-base pygobject2 ] ; propagatedBuildInputs = [ gstreamer python ]; diff --git a/pkgs/development/libraries/gstreamer/legacy/gstreamermm/default.nix b/pkgs/development/libraries/gstreamer/legacy/gstreamermm/default.nix index ce6ae9318363..f181aa029bd7 100644 --- a/pkgs/development/libraries/gstreamer/legacy/gstreamermm/default.nix +++ b/pkgs/development/libraries/gstreamer/legacy/gstreamermm/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchurl, glibmm, gstreamer, gst_plugins_base, libsigcxx, libxmlxx, pkgconfig }: +{ stdenv, fetchurl, glibmm, gstreamer, gst-plugins-base, libsigcxx, libxmlxx, pkgconfig }: let ver_maj = "0.10"; @@ -15,7 +15,7 @@ stdenv.mkDerivation rec { doCheck = false; # Tests require pulseaudio in /homeless-shelter propagatedBuildInputs = [ - glibmm gstreamer gst_plugins_base libsigcxx libxmlxx + glibmm gstreamer gst-plugins-base libsigcxx libxmlxx ]; nativeBuildInputs = [ pkgconfig ]; diff --git a/pkgs/development/libraries/gstreamer/legacy/qt-gstreamer/default.nix b/pkgs/development/libraries/gstreamer/legacy/qt-gstreamer/default.nix index c0cab607062d..d298fbd7fc33 100644 --- a/pkgs/development/libraries/gstreamer/legacy/qt-gstreamer/default.nix +++ b/pkgs/development/libraries/gstreamer/legacy/qt-gstreamer/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchurl, gstreamer, gst_plugins_base, boost, glib, qt4, cmake +{ stdenv, fetchurl, gstreamer, gst-plugins-base, boost, glib, qt4, cmake , automoc4, flex, bison, pkgconfig }: stdenv.mkDerivation rec { @@ -10,7 +10,7 @@ stdenv.mkDerivation rec { sha256 = "1pqg9sxzk8sdrf7pazb5v21hasqai9i4l203gbdqz29w2ll1ybsl"; }; - buildInputs = [ gstreamer gst_plugins_base glib qt4 ]; + buildInputs = [ gstreamer gst-plugins-base glib qt4 ]; propagatedBuildInputs = [ boost ]; nativeBuildInputs = [ cmake automoc4 flex bison pkgconfig ]; diff --git a/pkgs/development/libraries/gstreamer/libav/default.nix b/pkgs/development/libraries/gstreamer/libav/default.nix index 32000bb89a02..c67a3c708b32 100644 --- a/pkgs/development/libraries/gstreamer/libav/default.nix +++ b/pkgs/development/libraries/gstreamer/libav/default.nix @@ -9,7 +9,7 @@ assert withSystemLibav -> libav != null; stdenv.mkDerivation rec { - name = "gst-libav-1.10.3"; + name = "gst-libav-1.10.4"; meta = { homepage = "http://gstreamer.freedesktop.org"; @@ -19,7 +19,7 @@ stdenv.mkDerivation rec { src = fetchurl { url = "${meta.homepage}/src/gst-libav/${name}.tar.xz"; - sha256 = "1aajayv63ardkbmcg7pnh2d87r067325a5wzinwihaw6n5jw2sws"; + sha256 = "12r68ri03mgbbwsxyn6yklgfsq32rwvyq83zw0aq7m73fp5gx83c"; }; outputs = [ "out" "dev" ]; diff --git a/pkgs/development/libraries/gstreamer/python/default.nix b/pkgs/development/libraries/gstreamer/python/default.nix index 7db887e36beb..4c3cdd901276 100644 --- a/pkgs/development/libraries/gstreamer/python/default.nix +++ b/pkgs/development/libraries/gstreamer/python/default.nix @@ -6,14 +6,14 @@ let inherit (pythonPackages) python pygobject3; in stdenv.mkDerivation rec { - name = "gst-python-1.10.3"; + name = "gst-python-1.10.4"; src = fetchurl { urls = [ "${meta.homepage}/src/gst-python/${name}.tar.xz" "mirror://gentoo/distfiles/${name}.tar.xz" ]; - sha256 = "bdfa2d06dfe0ce68f638b04fed6890db506416c1dcf1279e83458269d719a4e8"; + sha256 = "04l2hvvz9b0f3nyds1k3yfk5di8a91fpr6maj19c11mwp1s82l2r"; }; patches = [ ./different-path-with-pygobject.patch ]; diff --git a/pkgs/development/libraries/gstreamer/ugly/default.nix b/pkgs/development/libraries/gstreamer/ugly/default.nix index 7220acf2d4d5..bd034ac13a15 100644 --- a/pkgs/development/libraries/gstreamer/ugly/default.nix +++ b/pkgs/development/libraries/gstreamer/ugly/default.nix @@ -5,7 +5,7 @@ }: stdenv.mkDerivation rec { - name = "gst-plugins-ugly-1.10.3"; + name = "gst-plugins-ugly-1.10.4"; meta = with stdenv.lib; { description = "Gstreamer Ugly Plugins"; @@ -22,7 +22,7 @@ stdenv.mkDerivation rec { src = fetchurl { url = "${meta.homepage}/src/gst-plugins-ugly/${name}.tar.xz"; - sha256 = "1lkb8kznc9wxmhbp7k67b50y27nz8jp2x2flb91xzydz7b89f5f9"; + sha256 = "0ngsiwcsz3jd08id4mc0qiy2q1n7h2kkvdnh3r1vm725m1ycg1k3"; }; outputs = [ "out" "dev" ]; diff --git a/pkgs/development/libraries/gstreamer/vaapi/default.nix b/pkgs/development/libraries/gstreamer/vaapi/default.nix index ec882a2863ab..ae32c8f95aec 100644 --- a/pkgs/development/libraries/gstreamer/vaapi/default.nix +++ b/pkgs/development/libraries/gstreamer/vaapi/default.nix @@ -5,11 +5,11 @@ stdenv.mkDerivation rec { name = "gst-vaapi-${version}"; - version = "1.10.3"; + version = "1.10.4"; src = fetchurl { url = "${meta.homepage}/src/gstreamer-vaapi/gstreamer-vaapi-${version}.tar.xz"; - sha256 = "07ing6z7n0ylz5vknk3d2lw54a6szd6m8hqc3px6lahmd832ga6f"; + sha256 = "0xfyf1mgcxnwf380wxv20hakl2srp34dmiw6bm4zkncl2mi91rh3"; }; outputs = [ "out" "dev" ]; diff --git a/pkgs/development/libraries/gstreamer/validate/default.nix b/pkgs/development/libraries/gstreamer/validate/default.nix index 6677926eaa99..d973bc1f3b61 100644 --- a/pkgs/development/libraries/gstreamer/validate/default.nix +++ b/pkgs/development/libraries/gstreamer/validate/default.nix @@ -3,7 +3,7 @@ }: stdenv.mkDerivation rec { - name = "gst-validate-1.10.3"; + name = "gst-validate-1.10.4"; meta = { description = "Integration testing infrastructure for the GStreamer framework"; @@ -14,7 +14,7 @@ stdenv.mkDerivation rec { src = fetchurl { url = "${meta.homepage}/src/gst-validate/${name}.tar.xz"; - sha256 = "00icav26pj81cxdykf86rp3jw6lb178ydrqhcck43i94jdb4hsxy"; + sha256 = "0g6px08x4kq5xqlbyxvxn6cm9b1s1gfvhkmlrmvw9afccjzh1775"; }; outputs = [ "out" "dev" ]; diff --git a/pkgs/development/libraries/gusb/default.nix b/pkgs/development/libraries/gusb/default.nix index ac0425b54ad8..5116e39562c8 100644 --- a/pkgs/development/libraries/gusb/default.nix +++ b/pkgs/development/libraries/gusb/default.nix @@ -4,22 +4,23 @@ }: stdenv.mkDerivation rec { name = "gusb-${version}"; - version = "0.2.4"; + version = "0.2.9"; enableParallelBuilding = true; src = fetchurl { url = "http://people.freedesktop.org/~hughsient/releases/libgusb-${version}.tar.xz"; - sha256 = "10w0sdq7505iwd8y305aylmx4zafbnphs81cgdsqw2z38pxncya3"; + sha256 = "056yxlppgycsfw1l8c9j6givk1n15jylhvx89wqhsxdi1b6vs83k"; }; preConfigure = "./autogen.sh"; buildInputs = [ pkgconfig autoconf automake libtool which gtkdoc gettext gobjectIntrospection libxslt - systemd libusb1 vala_0_23 - glib + systemd vala_0_23 glib ]; + propagatedBuildInputs = [ libusb1 ]; + meta = { description = "GLib libusb wrapper"; homepage = http://people.freedesktop.org/~hughsient/releases/; diff --git a/pkgs/development/libraries/kde-frameworks/attica.nix b/pkgs/development/libraries/kde-frameworks/attica.nix index d34b3f3a2c5f..6533a05b1602 100644 --- a/pkgs/development/libraries/kde-frameworks/attica.nix +++ b/pkgs/development/libraries/kde-frameworks/attica.nix @@ -1,7 +1,8 @@ -{ kdeFramework, lib, ecm }: +{ kdeFramework, lib, extra-cmake-modules, qtbase }: kdeFramework { name = "attica"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; + buildInputs = [ qtbase ]; } diff --git a/pkgs/development/libraries/kde-frameworks/baloo.nix b/pkgs/development/libraries/kde-frameworks/baloo.nix index 9c803fdc7176..dc7b6af193bc 100644 --- a/pkgs/development/libraries/kde-frameworks/baloo.nix +++ b/pkgs/development/libraries/kde-frameworks/baloo.nix @@ -1,4 +1,4 @@ -{ kdeFramework, lib, ecm, kauth, kconfig +{ kdeFramework, lib, extra-cmake-modules, kauth, kconfig , kcoreaddons, kcrash, kdbusaddons, kfilemetadata, ki18n, kidletime , kio, lmdb, qtbase, solid }: @@ -6,7 +6,7 @@ kdeFramework { name = "baloo"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; propagatedBuildInputs = [ kauth kconfig kcoreaddons kcrash kdbusaddons kfilemetadata ki18n kio kidletime lmdb qtbase solid diff --git a/pkgs/development/libraries/kde-frameworks/bluez-qt.nix b/pkgs/development/libraries/kde-frameworks/bluez-qt.nix index 7ab82bdc1ef5..93c945b58ca4 100644 --- a/pkgs/development/libraries/kde-frameworks/bluez-qt.nix +++ b/pkgs/development/libraries/kde-frameworks/bluez-qt.nix @@ -1,12 +1,12 @@ { kdeFramework, lib -, ecm +, extra-cmake-modules , qtdeclarative }: kdeFramework { name = "bluez-qt"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; propagatedBuildInputs = [ qtdeclarative ]; preConfigure = '' substituteInPlace CMakeLists.txt \ diff --git a/pkgs/development/libraries/kde-frameworks/breeze-icons.nix b/pkgs/development/libraries/kde-frameworks/breeze-icons.nix index c87ba75b2b46..9a18ade96a80 100644 --- a/pkgs/development/libraries/kde-frameworks/breeze-icons.nix +++ b/pkgs/development/libraries/kde-frameworks/breeze-icons.nix @@ -1,10 +1,10 @@ -{ kdeFramework, lib, ecm, qtsvg }: +{ kdeFramework, lib, extra-cmake-modules, qtsvg }: kdeFramework { name = "breeze-icons"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; outputs = [ "out" ]; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; buildInputs = [ qtsvg ]; propagatedUserEnvPkgs = [ qtsvg.out ]; } diff --git a/pkgs/development/libraries/kde-frameworks/build-support/framework.nix b/pkgs/development/libraries/kde-frameworks/build-support/framework.nix new file mode 100644 index 000000000000..5b6f2cc4b26d --- /dev/null +++ b/pkgs/development/libraries/kde-frameworks/build-support/framework.nix @@ -0,0 +1,24 @@ +{ kdeDerivation, lib, fetchurl }: + +let + mirror = "mirror://kde"; + srcs = import ../srcs.nix { inherit fetchurl mirror; }; +in + +args: + +let + inherit (args) name; + inherit (srcs."${name}") src version; +in kdeDerivation (args // { + name = "${name}-${version}"; + inherit src; + + meta = { + license = with lib.licenses; [ + lgpl21Plus lgpl3Plus bsd2 mit gpl2Plus gpl3Plus fdl12 + ]; + platforms = lib.platforms.linux; + homepage = "http://www.kde.org"; + } // (args.meta or {}); +}) diff --git a/pkgs/development/libraries/kde-frameworks/default.nix b/pkgs/development/libraries/kde-frameworks/default.nix index ee7614bbcf10..2906dc788865 100644 --- a/pkgs/development/libraries/kde-frameworks/default.nix +++ b/pkgs/development/libraries/kde-frameworks/default.nix @@ -19,143 +19,94 @@ existing packages here and modify it as necessary. 1. Update the URL in `./fetch.sh`. 2. Run `./maintainers/scripts/fetch-kde-qt.sh pkgs/development/libraries/kde-frameworks` from the top of the Nixpkgs tree. -3. Invoke `nix-build -A kde5` and ensure that everything builds. +3. Use `nox-review wip` to check that everything builds. 4. Commit the changes and open a pull request. */ -{ pkgs, debug ? false }: +{ libsForQt5, kdeDerivation, lib, fetchurl }: let - - inherit (pkgs) lib makeSetupHook stdenv; - - mirror = "mirror://kde"; - srcs = import ./srcs.nix { inherit (pkgs) fetchurl; inherit mirror; }; - - packages = self: with self; { - - kdeDerivation = args: - let - in stdenv.mkDerivation (args // { - - outputs = args.outputs or [ "out" "dev" ]; - - propagatedUserEnvPkgs = - builtins.map lib.getBin (args.propagatedBuildInputs or []); - - cmakeFlags = - (args.cmakeFlags or []) - ++ [ "-DBUILD_TESTING=OFF" ] - ++ lib.optional debug "-DCMAKE_BUILD_TYPE=Debug"; - - }); - - kdeFramework = let - broken = builtins.compareVersions self.qtbase.version "5.6.0" < 0; - in args: - let - inherit (args) name; - inherit (srcs."${name}") src version; - in kdeDerivation (args // { - name = "${name}-${version}"; - inherit src; - - meta = { - license = with lib.licenses; [ - lgpl21Plus lgpl3Plus bsd2 mit gpl2Plus gpl3Plus fdl12 - ]; - platforms = lib.platforms.linux; - homepage = "http://www.kde.org"; - inherit broken; - } // (args.meta or {}); - }); - - kdeWrapper = import ./kde-wrapper.nix { - inherit (pkgs) stdenv lib makeWrapper buildEnv; - }; - - attica = callPackage ./attica.nix {}; - baloo = callPackage ./baloo.nix {}; - bluez-qt = callPackage ./bluez-qt.nix {}; - breeze-icons = callPackage ./breeze-icons.nix {}; - # FIXME: this collides with the "ecm" package. - ecm = - let drv = { cmake, ecmNoHooks, pkgconfig, qtbase, qttools }: - makeSetupHook - { deps = lib.chooseDevOutputs [ cmake ecmNoHooks pkgconfig qtbase qttools ]; } - ./setup-hook.sh; - in callPackage drv {}; - ecmNoHooks = callPackage ./extra-cmake-modules { - inherit (srcs.extra-cmake-modules) src version; + packages = self: with self; + let + callPackage = self.newScope { + kdeFramework = import ./build-support/framework.nix { + inherit kdeDerivation lib fetchurl; + }; + }; + in { + attica = callPackage ./attica.nix {}; + baloo = callPackage ./baloo.nix {}; + bluez-qt = callPackage ./bluez-qt.nix {}; + breeze-icons = callPackage ./breeze-icons.nix {}; + extra-cmake-modules = callPackage ./extra-cmake-modules {}; + frameworkintegration = callPackage ./frameworkintegration.nix {}; + kactivities = callPackage ./kactivities.nix {}; + kactivities-stats = callPackage ./kactivities-stats.nix {}; + kapidox = callPackage ./kapidox.nix {}; + karchive = callPackage ./karchive.nix {}; + kauth = callPackage ./kauth {}; + kbookmarks = callPackage ./kbookmarks.nix {}; + kcmutils = callPackage ./kcmutils {}; + kcodecs = callPackage ./kcodecs.nix {}; + kcompletion = callPackage ./kcompletion.nix {}; + kconfig = callPackage ./kconfig.nix {}; + kconfigwidgets = callPackage ./kconfigwidgets {}; + kcoreaddons = callPackage ./kcoreaddons.nix {}; + kcrash = callPackage ./kcrash.nix {}; + kdbusaddons = callPackage ./kdbusaddons.nix {}; + kdeclarative = callPackage ./kdeclarative.nix {}; + kded = callPackage ./kded.nix {}; + kdelibs4support = callPackage ./kdelibs4support {}; + kdesignerplugin = callPackage ./kdesignerplugin.nix {}; + kdesu = callPackage ./kdesu.nix {}; + kdnssd = callPackage ./kdnssd.nix {}; + kdoctools = callPackage ./kdoctools {}; + kemoticons = callPackage ./kemoticons.nix {}; + kfilemetadata = callPackage ./kfilemetadata {}; + kglobalaccel = callPackage ./kglobalaccel.nix {}; + kguiaddons = callPackage ./kguiaddons.nix {}; + khtml = callPackage ./khtml.nix {}; + ki18n = callPackage ./ki18n.nix {}; + kiconthemes = callPackage ./kiconthemes {}; + kidletime = callPackage ./kidletime.nix {}; + kimageformats = callPackage ./kimageformats.nix {}; + kinit = callPackage ./kinit {}; + kio = callPackage ./kio {}; + kitemmodels = callPackage ./kitemmodels.nix {}; + kitemviews = callPackage ./kitemviews.nix {}; + kjobwidgets = callPackage ./kjobwidgets.nix {}; + kjs = callPackage ./kjs.nix {}; + kjsembed = callPackage ./kjsembed.nix {}; + kmediaplayer = callPackage ./kmediaplayer.nix {}; + knewstuff = callPackage ./knewstuff.nix {}; + knotifications = callPackage ./knotifications.nix {}; + knotifyconfig = callPackage ./knotifyconfig.nix {}; + kpackage = callPackage ./kpackage {}; + kparts = callPackage ./kparts.nix {}; + kpeople = callPackage ./kpeople.nix {}; + kplotting = callPackage ./kplotting.nix {}; + kpty = callPackage ./kpty.nix {}; + kross = callPackage ./kross.nix {}; + krunner = callPackage ./krunner.nix {}; + kservice = callPackage ./kservice {}; + ktexteditor = callPackage ./ktexteditor.nix {}; + ktextwidgets = callPackage ./ktextwidgets.nix {}; + kunitconversion = callPackage ./kunitconversion.nix {}; + kwallet = callPackage ./kwallet.nix {}; + kwayland = callPackage ./kwayland.nix {}; + kwidgetsaddons = callPackage ./kwidgetsaddons.nix {}; + kwindowsystem = callPackage ./kwindowsystem.nix {}; + kxmlgui = callPackage ./kxmlgui.nix {}; + kxmlrpcclient = callPackage ./kxmlrpcclient.nix {}; + modemmanager-qt = callPackage ./modemmanager-qt.nix {}; + networkmanager-qt = callPackage ./networkmanager-qt.nix {}; + oxygen-icons5 = callPackage ./oxygen-icons5.nix {}; + plasma-framework = callPackage ./plasma-framework.nix {}; + solid = callPackage ./solid.nix {}; + sonnet = callPackage ./sonnet.nix {}; + syntax-highlighting = callPackage ./syntax-highlighting.nix {}; + threadweaver = callPackage ./threadweaver.nix {}; }; - frameworkintegration = callPackage ./frameworkintegration.nix {}; - kactivities = callPackage ./kactivities.nix {}; - kactivities-stats = callPackage ./kactivities-stats.nix {}; - kapidox = callPackage ./kapidox.nix {}; - karchive = callPackage ./karchive.nix {}; - kauth = callPackage ./kauth {}; - kbookmarks = callPackage ./kbookmarks.nix {}; - kcmutils = callPackage ./kcmutils {}; - kcodecs = callPackage ./kcodecs.nix {}; - kcompletion = callPackage ./kcompletion.nix {}; - kconfig = callPackage ./kconfig.nix {}; - kconfigwidgets = callPackage ./kconfigwidgets {}; - kcoreaddons = callPackage ./kcoreaddons.nix {}; - kcrash = callPackage ./kcrash.nix {}; - kdbusaddons = callPackage ./kdbusaddons.nix {}; - kdeclarative = callPackage ./kdeclarative.nix {}; - kded = callPackage ./kded.nix {}; - kdelibs4support = callPackage ./kdelibs4support {}; - kdesignerplugin = callPackage ./kdesignerplugin.nix {}; - kdesu = callPackage ./kdesu.nix {}; - kdnssd = callPackage ./kdnssd.nix {}; - kdoctools = callPackage ./kdoctools {}; - kemoticons = callPackage ./kemoticons.nix {}; - kfilemetadata = callPackage ./kfilemetadata {}; - kglobalaccel = callPackage ./kglobalaccel.nix {}; - kguiaddons = callPackage ./kguiaddons.nix {}; - khtml = callPackage ./khtml.nix {}; - ki18n = callPackage ./ki18n.nix {}; - kiconthemes = callPackage ./kiconthemes {}; - kidletime = callPackage ./kidletime.nix {}; - kimageformats = callPackage ./kimageformats.nix {}; - kinit = callPackage ./kinit {}; - kio = callPackage ./kio {}; - kitemmodels = callPackage ./kitemmodels.nix {}; - kitemviews = callPackage ./kitemviews.nix {}; - kjobwidgets = callPackage ./kjobwidgets.nix {}; - kjs = callPackage ./kjs.nix {}; - kjsembed = callPackage ./kjsembed.nix {}; - kmediaplayer = callPackage ./kmediaplayer.nix {}; - knewstuff = callPackage ./knewstuff.nix {}; - knotifications = callPackage ./knotifications.nix {}; - knotifyconfig = callPackage ./knotifyconfig.nix {}; - kpackage = callPackage ./kpackage {}; - kparts = callPackage ./kparts.nix {}; - kpeople = callPackage ./kpeople.nix {}; - kplotting = callPackage ./kplotting.nix {}; - kpty = callPackage ./kpty.nix {}; - kross = callPackage ./kross.nix {}; - krunner = callPackage ./krunner.nix {}; - kservice = callPackage ./kservice {}; - ktexteditor = callPackage ./ktexteditor.nix {}; - ktextwidgets = callPackage ./ktextwidgets.nix {}; - kunitconversion = callPackage ./kunitconversion.nix {}; - kwallet = callPackage ./kwallet.nix {}; - kwayland = callPackage ./kwayland.nix {}; - kwidgetsaddons = callPackage ./kwidgetsaddons.nix {}; - kwindowsystem = callPackage ./kwindowsystem.nix {}; - kxmlgui = callPackage ./kxmlgui.nix {}; - kxmlrpcclient = callPackage ./kxmlrpcclient.nix {}; - modemmanager-qt = callPackage ./modemmanager-qt.nix {}; - networkmanager-qt = callPackage ./networkmanager-qt.nix {}; - oxygen-icons5 = callPackage ./oxygen-icons5.nix {}; - plasma-framework = callPackage ./plasma-framework.nix {}; - solid = callPackage ./solid.nix {}; - sonnet = callPackage ./sonnet.nix {}; - syntax-highlighting = callPackage ./syntax-highlighting.nix {}; - threadweaver = callPackage ./threadweaver.nix {}; - }; -in packages +in lib.makeScope libsForQt5.newScope packages diff --git a/pkgs/development/libraries/kde-frameworks/extra-cmake-modules/default.nix b/pkgs/development/libraries/kde-frameworks/extra-cmake-modules/default.nix index d2f1688e330b..b2e3a371e965 100644 --- a/pkgs/development/libraries/kde-frameworks/extra-cmake-modules/default.nix +++ b/pkgs/development/libraries/kde-frameworks/extra-cmake-modules/default.nix @@ -1,15 +1,15 @@ -{ stdenv, lib, copyPathsToStore, src, version, cmake }: +{ kdeFramework, lib, copyPathsToStore, cmake, pkgconfig }: -stdenv.mkDerivation { - name = "extra-cmake-modules-${version}"; - - inherit src; +kdeFramework { + name = "extra-cmake-modules"; patches = copyPathsToStore (lib.readPathsFromFile ./. ./series); outputs = [ "out" ]; # this package has no runtime components - nativeBuildInputs = [ cmake ]; + propagatedNativeBuildInputs = [ cmake pkgconfig ]; + + setupHook = ./setup-hook.sh; meta = with lib; { platforms = lib.platforms.linux; diff --git a/pkgs/development/libraries/kde-frameworks/setup-hook.sh b/pkgs/development/libraries/kde-frameworks/extra-cmake-modules/setup-hook.sh index a1638ca541be..9ee9ef90a44b 100644 --- a/pkgs/development/libraries/kde-frameworks/setup-hook.sh +++ b/pkgs/development/libraries/kde-frameworks/extra-cmake-modules/setup-hook.sh @@ -1,6 +1,6 @@ _ecmSetXdgDirs() { - addToSearchPathOnce XDG_DATA_DIRS "$1/share" - addToSearchPathOnce XDG_CONFIG_DIRS "$1/etc/xdg" + addToSearchPath XDG_DATA_DIRS "$1/share" + addToSearchPath XDG_CONFIG_DIRS "$1/etc/xdg" } envHooks+=(_ecmSetXdgDirs) diff --git a/pkgs/development/libraries/kde-frameworks/frameworkintegration.nix b/pkgs/development/libraries/kde-frameworks/frameworkintegration.nix index 029a661601df..325758bf91db 100644 --- a/pkgs/development/libraries/kde-frameworks/frameworkintegration.nix +++ b/pkgs/development/libraries/kde-frameworks/frameworkintegration.nix @@ -1,6 +1,6 @@ { kdeFramework, lib, - ecm, + extra-cmake-modules, kbookmarks, kcompletion, kconfig, kconfigwidgets, ki18n, kiconthemes, kio, knewstuff, knotifications, kpackage, kwidgetsaddons, libXcursor, qtx11extras }: @@ -8,7 +8,7 @@ kdeFramework { name = "frameworkintegration"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; propagatedBuildInputs = [ kbookmarks kcompletion kconfig kconfigwidgets ki18n kio kiconthemes knewstuff knotifications kpackage kwidgetsaddons libXcursor qtx11extras diff --git a/pkgs/development/libraries/kde-frameworks/kactivities-stats.nix b/pkgs/development/libraries/kde-frameworks/kactivities-stats.nix index 4f406376faa7..25188b009b62 100644 --- a/pkgs/development/libraries/kde-frameworks/kactivities-stats.nix +++ b/pkgs/development/libraries/kde-frameworks/kactivities-stats.nix @@ -1,8 +1,8 @@ -{ kdeFramework, lib, ecm, boost, kactivities, kconfig }: +{ kdeFramework, lib, extra-cmake-modules, boost, kactivities, kconfig }: kdeFramework { name = "kactivities-stats"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; propagatedBuildInputs = [ boost kactivities kconfig ]; } diff --git a/pkgs/development/libraries/kde-frameworks/kactivities.nix b/pkgs/development/libraries/kde-frameworks/kactivities.nix index a2cacd4b257d..167c3f15bbda 100644 --- a/pkgs/development/libraries/kde-frameworks/kactivities.nix +++ b/pkgs/development/libraries/kde-frameworks/kactivities.nix @@ -1,4 +1,4 @@ -{ kdeFramework, lib, ecm, boost, kcmutils, kconfig +{ kdeFramework, lib, extra-cmake-modules, boost, kcmutils, kconfig , kcoreaddons, kdbusaddons, kdeclarative, kglobalaccel, ki18n , kio, kservice, kwindowsystem, kxmlgui, qtdeclarative }: @@ -6,7 +6,7 @@ kdeFramework { name = "kactivities"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; propagatedBuildInputs = [ boost kcmutils kconfig kcoreaddons kdbusaddons kdeclarative kglobalaccel ki18n kio kservice kwindowsystem kxmlgui qtdeclarative diff --git a/pkgs/development/libraries/kde-frameworks/kapidox.nix b/pkgs/development/libraries/kde-frameworks/kapidox.nix index f6c60b7731e1..749cf9b29709 100644 --- a/pkgs/development/libraries/kde-frameworks/kapidox.nix +++ b/pkgs/development/libraries/kde-frameworks/kapidox.nix @@ -1,7 +1,7 @@ -{ kdeFramework, lib, ecm, python }: +{ kdeFramework, lib, extra-cmake-modules, python }: kdeFramework { name = "kapidox"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm python ]; + nativeBuildInputs = [ extra-cmake-modules python ]; } diff --git a/pkgs/development/libraries/kde-frameworks/karchive.nix b/pkgs/development/libraries/kde-frameworks/karchive.nix index 265df45800f1..ca3321bef849 100644 --- a/pkgs/development/libraries/kde-frameworks/karchive.nix +++ b/pkgs/development/libraries/kde-frameworks/karchive.nix @@ -1,7 +1,8 @@ -{ kdeFramework, lib, ecm }: +{ kdeFramework, lib, extra-cmake-modules, qtbase }: kdeFramework { name = "karchive"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; + buildInputs = [ qtbase ]; } diff --git a/pkgs/development/libraries/kde-frameworks/kauth/default.nix b/pkgs/development/libraries/kde-frameworks/kauth/default.nix index f2a1c7717d5d..7561575ae84e 100644 --- a/pkgs/development/libraries/kde-frameworks/kauth/default.nix +++ b/pkgs/development/libraries/kde-frameworks/kauth/default.nix @@ -1,9 +1,9 @@ -{ kdeFramework, lib, copyPathsToStore, ecm, kcoreaddons, polkit-qt }: +{ kdeFramework, lib, copyPathsToStore, extra-cmake-modules, kcoreaddons, polkit-qt, qttools }: kdeFramework { name = "kauth"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules qttools ]; propagatedBuildInputs = [ kcoreaddons polkit-qt ]; patches = copyPathsToStore (lib.readPathsFromFile ./. ./series); } diff --git a/pkgs/development/libraries/kde-frameworks/kbookmarks.nix b/pkgs/development/libraries/kde-frameworks/kbookmarks.nix index 50cec5a39c86..36ea74058429 100644 --- a/pkgs/development/libraries/kde-frameworks/kbookmarks.nix +++ b/pkgs/development/libraries/kde-frameworks/kbookmarks.nix @@ -1,12 +1,12 @@ { - kdeFramework, lib, ecm, + kdeFramework, lib, extra-cmake-modules, kcodecs, kconfig, kconfigwidgets, kcoreaddons, kiconthemes, kxmlgui }: kdeFramework { name = "kbookmarks"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; propagatedBuildInputs = [ kcodecs kconfig kconfigwidgets kcoreaddons kiconthemes kxmlgui ]; diff --git a/pkgs/development/libraries/kde-frameworks/kcmutils/default.nix b/pkgs/development/libraries/kde-frameworks/kcmutils/default.nix index dd1af737d68e..fdf55174548e 100644 --- a/pkgs/development/libraries/kde-frameworks/kcmutils/default.nix +++ b/pkgs/development/libraries/kde-frameworks/kcmutils/default.nix @@ -1,4 +1,4 @@ -{ kdeFramework, lib, ecm, kconfigwidgets +{ kdeFramework, lib, extra-cmake-modules, kconfigwidgets , kcoreaddons, kdeclarative, ki18n, kiconthemes, kitemviews , kpackage, kservice, kxmlgui }: @@ -6,7 +6,7 @@ kdeFramework { name = "kcmutils"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; propagatedBuildInputs = [ kconfigwidgets kcoreaddons kdeclarative ki18n kiconthemes kitemviews kpackage kservice kxmlgui diff --git a/pkgs/development/libraries/kde-frameworks/kcodecs.nix b/pkgs/development/libraries/kde-frameworks/kcodecs.nix index a3fcd3023f52..482c30b7b57e 100644 --- a/pkgs/development/libraries/kde-frameworks/kcodecs.nix +++ b/pkgs/development/libraries/kde-frameworks/kcodecs.nix @@ -1,7 +1,8 @@ -{ kdeFramework, lib, ecm }: +{ kdeFramework, lib, extra-cmake-modules, qtbase, qttools }: kdeFramework { name = "kcodecs"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules qttools ]; + buildInputs = [ qtbase ]; } diff --git a/pkgs/development/libraries/kde-frameworks/kcompletion.nix b/pkgs/development/libraries/kde-frameworks/kcompletion.nix index 893f374933ea..f143524889ad 100644 --- a/pkgs/development/libraries/kde-frameworks/kcompletion.nix +++ b/pkgs/development/libraries/kde-frameworks/kcompletion.nix @@ -1,8 +1,9 @@ -{ kdeFramework, lib, ecm, kconfig, kwidgetsaddons }: +{ kdeFramework, lib, extra-cmake-modules, kconfig, kwidgetsaddons, qtbase, qttools }: kdeFramework { name = "kcompletion"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules qttools ]; + buildInputs = [ qtbase ]; propagatedBuildInputs = [ kconfig kwidgetsaddons ]; } diff --git a/pkgs/development/libraries/kde-frameworks/kconfig.nix b/pkgs/development/libraries/kde-frameworks/kconfig.nix index 0f003f8ea97e..981256e75bf6 100644 --- a/pkgs/development/libraries/kde-frameworks/kconfig.nix +++ b/pkgs/development/libraries/kde-frameworks/kconfig.nix @@ -1,7 +1,8 @@ -{ kdeFramework, lib, ecm }: +{ kdeFramework, lib, extra-cmake-modules, qtbase, qttools }: kdeFramework { name = "kconfig"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules qttools ]; + buildInputs = [ qtbase ]; } diff --git a/pkgs/development/libraries/kde-frameworks/kconfigwidgets/default.nix b/pkgs/development/libraries/kde-frameworks/kconfigwidgets/default.nix index b88308b634c0..c44473bb915e 100644 --- a/pkgs/development/libraries/kde-frameworks/kconfigwidgets/default.nix +++ b/pkgs/development/libraries/kde-frameworks/kconfigwidgets/default.nix @@ -1,12 +1,12 @@ { - kdeFramework, lib, ecm, + kdeFramework, lib, extra-cmake-modules, kauth, kcodecs, kconfig, kdoctools, kguiaddons, ki18n, kwidgetsaddons }: kdeFramework { name = "kconfigwidgets"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm kdoctools ]; + nativeBuildInputs = [ extra-cmake-modules kdoctools ]; propagatedBuildInputs = [ kauth kconfig kcodecs kguiaddons ki18n kwidgetsaddons ]; diff --git a/pkgs/development/libraries/kde-frameworks/kcoreaddons.nix b/pkgs/development/libraries/kde-frameworks/kcoreaddons.nix index ca8c521894bd..f5d04a30b1ae 100644 --- a/pkgs/development/libraries/kde-frameworks/kcoreaddons.nix +++ b/pkgs/development/libraries/kde-frameworks/kcoreaddons.nix @@ -1,8 +1,9 @@ -{ kdeFramework, lib, fetchurl, ecm, shared_mime_info }: +{ kdeFramework, lib, fetchurl, extra-cmake-modules, qtbase, qttools, shared_mime_info }: kdeFramework { name = "kcoreaddons"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules qttools ]; + buildInputs = [ qtbase ]; propagatedBuildInputs = [ shared_mime_info ]; } diff --git a/pkgs/development/libraries/kde-frameworks/kcrash.nix b/pkgs/development/libraries/kde-frameworks/kcrash.nix index 2fcadc828cf4..bd008c732af7 100644 --- a/pkgs/development/libraries/kde-frameworks/kcrash.nix +++ b/pkgs/development/libraries/kde-frameworks/kcrash.nix @@ -1,8 +1,8 @@ -{ kdeFramework, lib, ecm, kcoreaddons, kwindowsystem, qtx11extras }: +{ kdeFramework, lib, extra-cmake-modules, kcoreaddons, kwindowsystem, qtx11extras }: kdeFramework { name = "kcrash"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; propagatedBuildInputs = [ kcoreaddons kwindowsystem qtx11extras ]; } diff --git a/pkgs/development/libraries/kde-frameworks/kdbusaddons.nix b/pkgs/development/libraries/kde-frameworks/kdbusaddons.nix index 663200516604..bc5aeff556d8 100644 --- a/pkgs/development/libraries/kde-frameworks/kdbusaddons.nix +++ b/pkgs/development/libraries/kde-frameworks/kdbusaddons.nix @@ -1,8 +1,8 @@ -{ kdeFramework, lib, ecm, qtx11extras }: +{ kdeFramework, lib, extra-cmake-modules, qttools, qtx11extras }: kdeFramework { name = "kdbusaddons"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules qttools ]; propagatedBuildInputs = [ qtx11extras ]; } diff --git a/pkgs/development/libraries/kde-frameworks/kdeclarative.nix b/pkgs/development/libraries/kde-frameworks/kdeclarative.nix index a90a419d9b84..05eaffb9fbf6 100644 --- a/pkgs/development/libraries/kde-frameworks/kdeclarative.nix +++ b/pkgs/development/libraries/kde-frameworks/kdeclarative.nix @@ -1,5 +1,5 @@ { - kdeFramework, lib, ecm, + kdeFramework, lib, extra-cmake-modules, epoxy, kconfig, kglobalaccel, kguiaddons, ki18n, kiconthemes, kio, kpackage, kwidgetsaddons, kwindowsystem, pkgconfig, qtdeclarative }: @@ -7,7 +7,7 @@ kdeFramework { name = "kdeclarative"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; propagatedBuildInputs = [ epoxy kconfig kglobalaccel kguiaddons ki18n kiconthemes kio kpackage kwidgetsaddons kwindowsystem qtdeclarative diff --git a/pkgs/development/libraries/kde-frameworks/kded.nix b/pkgs/development/libraries/kde-frameworks/kded.nix index d8fe820518d3..2da1bac8f39c 100644 --- a/pkgs/development/libraries/kde-frameworks/kded.nix +++ b/pkgs/development/libraries/kde-frameworks/kded.nix @@ -1,12 +1,12 @@ { - kdeFramework, lib, ecm, + kdeFramework, lib, extra-cmake-modules, kconfig, kcoreaddons, kcrash, kdbusaddons, kdoctools, kinit, kservice }: kdeFramework { name = "kded"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm kdoctools ]; + nativeBuildInputs = [ extra-cmake-modules kdoctools ]; propagatedBuildInputs = [ kconfig kcoreaddons kcrash kdbusaddons kinit kservice ]; diff --git a/pkgs/development/libraries/kde-frameworks/kdelibs4support/default.nix b/pkgs/development/libraries/kde-frameworks/kdelibs4support/default.nix index f3fd315e5500..1174972917e4 100644 --- a/pkgs/development/libraries/kde-frameworks/kdelibs4support/default.nix +++ b/pkgs/development/libraries/kde-frameworks/kdelibs4support/default.nix @@ -1,5 +1,5 @@ { kdeFramework, lib, copyPathsToStore -, ecm, docbook_xml_dtd_45, kauth +, extra-cmake-modules, docbook_xml_dtd_45, kauth , karchive, kcompletion, kconfig, kconfigwidgets, kcoreaddons , kcrash, kdbusaddons, kded, kdesignerplugin, kdoctools, kemoticons , kglobalaccel, kguiaddons, ki18n, kiconthemes, kio, kitemmodels @@ -15,7 +15,7 @@ kdeFramework { meta = { maintainers = [ lib.maintainers.ttuegel ]; }; patches = copyPathsToStore (lib.readPathsFromFile ./. ./series); setupHook = ./setup-hook.sh; - nativeBuildInputs = [ ecm kdoctools ]; + nativeBuildInputs = [ extra-cmake-modules kdoctools ]; propagatedBuildInputs = [ kauth karchive kcompletion kconfig kconfigwidgets kcoreaddons kcrash kdbusaddons kded kdesignerplugin kemoticons kglobalaccel kguiaddons ki18n diff --git a/pkgs/development/libraries/kde-frameworks/kdesignerplugin.nix b/pkgs/development/libraries/kde-frameworks/kdesignerplugin.nix index e87bb5bf9d01..8e17a1a60c8d 100644 --- a/pkgs/development/libraries/kde-frameworks/kdesignerplugin.nix +++ b/pkgs/development/libraries/kde-frameworks/kdesignerplugin.nix @@ -1,5 +1,5 @@ { kdeFramework, lib -, ecm +, extra-cmake-modules , kcompletion , kconfig , kconfigwidgets @@ -18,7 +18,7 @@ kdeFramework { name = "kdesignerplugin"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm kdoctools ]; + nativeBuildInputs = [ extra-cmake-modules kdoctools ]; propagatedBuildInputs = [ kcompletion kconfig kconfigwidgets kcoreaddons kiconthemes kio kitemviews kplotting ktextwidgets kwidgetsaddons kxmlgui sonnet diff --git a/pkgs/development/libraries/kde-frameworks/kdesu.nix b/pkgs/development/libraries/kde-frameworks/kdesu.nix index 0c5cb85cc494..fcccea9161f1 100644 --- a/pkgs/development/libraries/kde-frameworks/kdesu.nix +++ b/pkgs/development/libraries/kde-frameworks/kdesu.nix @@ -1,10 +1,10 @@ -{ kdeFramework, lib, ecm, kcoreaddons, ki18n, kpty +{ kdeFramework, lib, extra-cmake-modules, kcoreaddons, ki18n, kpty , kservice }: kdeFramework { name = "kdesu"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; propagatedBuildInputs = [ kcoreaddons ki18n kpty kservice ]; } diff --git a/pkgs/development/libraries/kde-frameworks/kdnssd.nix b/pkgs/development/libraries/kde-frameworks/kdnssd.nix index 49fd368fccbf..ad86b660c747 100644 --- a/pkgs/development/libraries/kde-frameworks/kdnssd.nix +++ b/pkgs/development/libraries/kde-frameworks/kdnssd.nix @@ -1,11 +1,12 @@ { kdeFramework, lib -, ecm -, avahi +, extra-cmake-modules, qttools +, avahi, qtbase }: kdeFramework { name = "kdnssd"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules qttools ]; propagatedBuildInputs = [ avahi ]; + buildInputs = [ qtbase ]; } diff --git a/pkgs/development/libraries/kde-frameworks/kdoctools/default.nix b/pkgs/development/libraries/kde-frameworks/kdoctools/default.nix index 4a31ea5396df..99fc4c7d023c 100644 --- a/pkgs/development/libraries/kde-frameworks/kdoctools/default.nix +++ b/pkgs/development/libraries/kde-frameworks/kdoctools/default.nix @@ -1,11 +1,11 @@ -{ kdeFramework, lib, ecm, docbook_xml_dtd_45 +{ kdeFramework, lib, extra-cmake-modules, docbook_xml_dtd_45 , docbook5_xsl, karchive, ki18n, perl, perlPackages }: kdeFramework { name = "kdoctools"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; propagatedBuildInputs = [ karchive ki18n ]; propagatedNativeBuildInputs = [ perl perlPackages.URI ]; cmakeFlags = [ diff --git a/pkgs/development/libraries/kde-frameworks/kemoticons.nix b/pkgs/development/libraries/kde-frameworks/kemoticons.nix index cdffbd503576..1e31277172d7 100644 --- a/pkgs/development/libraries/kde-frameworks/kemoticons.nix +++ b/pkgs/development/libraries/kde-frameworks/kemoticons.nix @@ -1,5 +1,5 @@ { kdeFramework, lib -, ecm +, extra-cmake-modules , karchive , kconfig , kcoreaddons @@ -9,6 +9,6 @@ kdeFramework { name = "kemoticons"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; propagatedBuildInputs = [ karchive kconfig kcoreaddons kservice ]; } diff --git a/pkgs/development/libraries/kde-frameworks/kfilemetadata/default.nix b/pkgs/development/libraries/kde-frameworks/kfilemetadata/default.nix index 31f692deca64..bc7349e7453f 100644 --- a/pkgs/development/libraries/kde-frameworks/kfilemetadata/default.nix +++ b/pkgs/development/libraries/kde-frameworks/kfilemetadata/default.nix @@ -1,4 +1,4 @@ -{ kdeFramework, lib, copyPathsToStore, ecm +{ kdeFramework, lib, copyPathsToStore, extra-cmake-modules , attr, ebook_tools, exiv2, ffmpeg, karchive, ki18n, poppler, qtbase, taglib }: @@ -6,7 +6,7 @@ kdeFramework { name = "kfilemetadata"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; patches = copyPathsToStore (lib.readPathsFromFile ./. ./series); - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; propagatedBuildInputs = [ attr ebook_tools exiv2 ffmpeg karchive ki18n poppler qtbase taglib ]; diff --git a/pkgs/development/libraries/kde-frameworks/kglobalaccel.nix b/pkgs/development/libraries/kde-frameworks/kglobalaccel.nix index bbb480c31658..1c1336dd4d0f 100644 --- a/pkgs/development/libraries/kde-frameworks/kglobalaccel.nix +++ b/pkgs/development/libraries/kde-frameworks/kglobalaccel.nix @@ -1,5 +1,5 @@ { - kdeFramework, lib, ecm, + kdeFramework, lib, extra-cmake-modules, kconfig, kcoreaddons, kcrash, kdbusaddons, kservice, kwindowsystem, qtx11extras }: @@ -7,7 +7,7 @@ kdeFramework { name = "kglobalaccel"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; propagatedBuildInputs = [ kconfig kcoreaddons kcrash kdbusaddons kservice kwindowsystem qtx11extras ]; diff --git a/pkgs/development/libraries/kde-frameworks/kguiaddons.nix b/pkgs/development/libraries/kde-frameworks/kguiaddons.nix index 9f20ecd598a4..6ebfd1104f70 100644 --- a/pkgs/development/libraries/kde-frameworks/kguiaddons.nix +++ b/pkgs/development/libraries/kde-frameworks/kguiaddons.nix @@ -1,11 +1,11 @@ { kdeFramework, lib -, ecm +, extra-cmake-modules , qtx11extras }: kdeFramework { name = "kguiaddons"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; propagatedBuildInputs = [ qtx11extras ]; } diff --git a/pkgs/development/libraries/kde-frameworks/khtml.nix b/pkgs/development/libraries/kde-frameworks/khtml.nix index be1094b7cf5a..99f6fe31e0d7 100644 --- a/pkgs/development/libraries/kde-frameworks/khtml.nix +++ b/pkgs/development/libraries/kde-frameworks/khtml.nix @@ -1,4 +1,4 @@ -{ kdeFramework, lib, ecm, giflib, karchive +{ kdeFramework, lib, extra-cmake-modules, giflib, karchive , kcodecs, kglobalaccel, ki18n, kiconthemes, kio, kjs , knotifications, kparts, ktextwidgets, kwallet, kwidgetsaddons , kwindowsystem, kxmlgui, perl, phonon, qtx11extras, sonnet @@ -7,7 +7,7 @@ kdeFramework { name = "khtml"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm perl ]; + nativeBuildInputs = [ extra-cmake-modules perl ]; propagatedBuildInputs = [ giflib karchive kcodecs kglobalaccel ki18n kiconthemes kio kjs knotifications kparts ktextwidgets kwallet kwidgetsaddons kwindowsystem diff --git a/pkgs/development/libraries/kde-frameworks/ki18n.nix b/pkgs/development/libraries/kde-frameworks/ki18n.nix index cf2212413bd2..2698a97fd33f 100644 --- a/pkgs/development/libraries/kde-frameworks/ki18n.nix +++ b/pkgs/development/libraries/kde-frameworks/ki18n.nix @@ -1,5 +1,5 @@ { kdeFramework, lib -, ecm +, extra-cmake-modules , gettext , python , qtdeclarative @@ -9,7 +9,7 @@ kdeFramework { name = "ki18n"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; propagatedBuildInputs = [ qtdeclarative qtscript ]; propagatedNativeBuildInputs = [ gettext python ]; } diff --git a/pkgs/development/libraries/kde-frameworks/kiconthemes/default.nix b/pkgs/development/libraries/kde-frameworks/kiconthemes/default.nix index 6141db849efe..6102bb0d4b56 100644 --- a/pkgs/development/libraries/kde-frameworks/kiconthemes/default.nix +++ b/pkgs/development/libraries/kde-frameworks/kiconthemes/default.nix @@ -1,5 +1,5 @@ { kdeFramework, lib, copyPathsToStore -, ecm +, extra-cmake-modules , karchive, kconfigwidgets, ki18n, breeze-icons, kitemviews, qtsvg }: @@ -7,6 +7,6 @@ kdeFramework { name = "kiconthemes"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; patches = copyPathsToStore (lib.readPathsFromFile ./. ./series); - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; propagatedBuildInputs = [ breeze-icons kconfigwidgets karchive ki18n kitemviews qtsvg ]; } diff --git a/pkgs/development/libraries/kde-frameworks/kidletime.nix b/pkgs/development/libraries/kde-frameworks/kidletime.nix index d3f46512db23..758260517e7d 100644 --- a/pkgs/development/libraries/kde-frameworks/kidletime.nix +++ b/pkgs/development/libraries/kde-frameworks/kidletime.nix @@ -1,5 +1,5 @@ { kdeFramework, lib -, ecm +, extra-cmake-modules , qtbase , qtx11extras }: @@ -7,6 +7,6 @@ kdeFramework { name = "kidletime"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; propagatedBuildInputs = [ qtbase qtx11extras ]; } diff --git a/pkgs/development/libraries/kde-frameworks/kimageformats.nix b/pkgs/development/libraries/kde-frameworks/kimageformats.nix index 631cac4217c8..2a8e825893bf 100644 --- a/pkgs/development/libraries/kde-frameworks/kimageformats.nix +++ b/pkgs/development/libraries/kde-frameworks/kimageformats.nix @@ -1,14 +1,14 @@ { kdeFramework, lib, - ecm, - ilmbase, karchive + extra-cmake-modules, + ilmbase, karchive, qtbase }: kdeFramework { name = "kimageformats"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; - buildInputs = [ ilmbase ]; + nativeBuildInputs = [ extra-cmake-modules ]; + buildInputs = [ ilmbase qtbase ]; propagatedBuildInputs = [ karchive ]; NIX_CFLAGS_COMPILE = "-I${ilmbase.dev}/include/OpenEXR"; } diff --git a/pkgs/development/libraries/kde-frameworks/kinit/default.nix b/pkgs/development/libraries/kde-frameworks/kinit/default.nix index 032bdd30d9ec..b965f761e922 100644 --- a/pkgs/development/libraries/kde-frameworks/kinit/default.nix +++ b/pkgs/development/libraries/kde-frameworks/kinit/default.nix @@ -1,13 +1,13 @@ { kdeFramework, lib, copyPathsToStore, - ecm, kdoctools, + extra-cmake-modules, kdoctools, kconfig, kcrash, ki18n, kio, kservice, kwindowsystem }: kdeFramework { name = "kinit"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm kdoctools ]; + nativeBuildInputs = [ extra-cmake-modules kdoctools ]; propagatedBuildInputs = [ kconfig kcrash ki18n kio kservice kwindowsystem ]; diff --git a/pkgs/development/libraries/kde-frameworks/kio/default.nix b/pkgs/development/libraries/kde-frameworks/kio/default.nix index 7623e44a0761..cb67c8459034 100644 --- a/pkgs/development/libraries/kde-frameworks/kio/default.nix +++ b/pkgs/development/libraries/kde-frameworks/kio/default.nix @@ -1,5 +1,5 @@ { kdeFramework, lib, copyPathsToStore -, ecm, acl, karchive +, extra-cmake-modules, acl, karchive , kbookmarks, kcompletion, kconfig, kconfigwidgets, kcoreaddons , kdbusaddons, kdoctools, ki18n, kiconthemes, kitemviews , kjobwidgets, knotifications, kservice, ktextwidgets, kwallet @@ -10,7 +10,7 @@ kdeFramework { name = "kio"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm kdoctools ]; + nativeBuildInputs = [ extra-cmake-modules kdoctools ]; propagatedBuildInputs = [ acl karchive kbookmarks kcompletion kconfig kconfigwidgets kcoreaddons kdbusaddons ki18n kiconthemes kitemviews kjobwidgets knotifications kservice diff --git a/pkgs/development/libraries/kde-frameworks/kitemmodels.nix b/pkgs/development/libraries/kde-frameworks/kitemmodels.nix index 0a474dfdb7d7..d6538e57698c 100644 --- a/pkgs/development/libraries/kde-frameworks/kitemmodels.nix +++ b/pkgs/development/libraries/kde-frameworks/kitemmodels.nix @@ -1,9 +1,10 @@ { kdeFramework, lib -, ecm +, extra-cmake-modules, qtbase }: kdeFramework { name = "kitemmodels"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; + buildInputs = [ qtbase ]; } diff --git a/pkgs/development/libraries/kde-frameworks/kitemviews.nix b/pkgs/development/libraries/kde-frameworks/kitemviews.nix index 0af3de5770a9..f114c007038b 100644 --- a/pkgs/development/libraries/kde-frameworks/kitemviews.nix +++ b/pkgs/development/libraries/kde-frameworks/kitemviews.nix @@ -1,9 +1,10 @@ { kdeFramework, lib -, ecm +, extra-cmake-modules, qtbase, qttools }: kdeFramework { name = "kitemviews"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules qttools ]; + buildInputs = [ qtbase ]; } diff --git a/pkgs/development/libraries/kde-frameworks/kjobwidgets.nix b/pkgs/development/libraries/kde-frameworks/kjobwidgets.nix index 1337f4109c2d..ddc66d2eb20a 100644 --- a/pkgs/development/libraries/kde-frameworks/kjobwidgets.nix +++ b/pkgs/development/libraries/kde-frameworks/kjobwidgets.nix @@ -1,13 +1,13 @@ { kdeFramework, lib -, ecm +, extra-cmake-modules , kcoreaddons , kwidgetsaddons -, qtx11extras +, qttools, qtx11extras }: kdeFramework { name = "kjobwidgets"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules qttools ]; propagatedBuildInputs = [ kcoreaddons kwidgetsaddons qtx11extras ]; } diff --git a/pkgs/development/libraries/kde-frameworks/kjs.nix b/pkgs/development/libraries/kde-frameworks/kjs.nix index 12852e6a1e77..abdc15ce8df6 100644 --- a/pkgs/development/libraries/kde-frameworks/kjs.nix +++ b/pkgs/development/libraries/kde-frameworks/kjs.nix @@ -1,10 +1,10 @@ { kdeFramework, lib -, ecm +, extra-cmake-modules , kdoctools }: kdeFramework { name = "kjs"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm kdoctools ]; + nativeBuildInputs = [ extra-cmake-modules kdoctools ]; } diff --git a/pkgs/development/libraries/kde-frameworks/kjsembed.nix b/pkgs/development/libraries/kde-frameworks/kjsembed.nix index 20c8b2eea162..95bc02422f1b 100644 --- a/pkgs/development/libraries/kde-frameworks/kjsembed.nix +++ b/pkgs/development/libraries/kde-frameworks/kjsembed.nix @@ -1,10 +1,10 @@ -{ kdeFramework, lib, ecm, kdoctools, ki18n, kjs +{ kdeFramework, lib, extra-cmake-modules, kdoctools, ki18n, kjs , qtsvg }: kdeFramework { name = "kjsembed"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm kdoctools ]; + nativeBuildInputs = [ extra-cmake-modules kdoctools ]; propagatedBuildInputs = [ ki18n kjs qtsvg ]; } diff --git a/pkgs/development/libraries/kde-frameworks/kmediaplayer.nix b/pkgs/development/libraries/kde-frameworks/kmediaplayer.nix index 360d8e90daf2..93a6b450f762 100644 --- a/pkgs/development/libraries/kde-frameworks/kmediaplayer.nix +++ b/pkgs/development/libraries/kde-frameworks/kmediaplayer.nix @@ -1,5 +1,5 @@ { kdeFramework, lib -, ecm +, extra-cmake-modules , kparts , kxmlgui }: @@ -7,6 +7,6 @@ kdeFramework { name = "kmediaplayer"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; propagatedBuildInputs = [ kparts kxmlgui ]; } diff --git a/pkgs/development/libraries/kde-frameworks/knewstuff.nix b/pkgs/development/libraries/kde-frameworks/knewstuff.nix index b6a84e2539d2..002418c65ad0 100644 --- a/pkgs/development/libraries/kde-frameworks/knewstuff.nix +++ b/pkgs/development/libraries/kde-frameworks/knewstuff.nix @@ -1,4 +1,4 @@ -{ kdeFramework, lib, ecm, attica, karchive +{ kdeFramework, lib, extra-cmake-modules, attica, karchive , kcompletion, kconfig, kcoreaddons, ki18n, kiconthemes, kio , kitemviews, kservice, ktextwidgets, kwidgetsaddons, kxmlgui }: @@ -6,7 +6,7 @@ kdeFramework { name = "knewstuff"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; propagatedBuildInputs = [ attica karchive kcompletion kconfig kcoreaddons ki18n kiconthemes kio kitemviews kservice ktextwidgets kwidgetsaddons kxmlgui diff --git a/pkgs/development/libraries/kde-frameworks/knotifications.nix b/pkgs/development/libraries/kde-frameworks/knotifications.nix index 061a5d8d142a..c1c079578725 100644 --- a/pkgs/development/libraries/kde-frameworks/knotifications.nix +++ b/pkgs/development/libraries/kde-frameworks/knotifications.nix @@ -1,15 +1,15 @@ { kdeFramework, lib -, ecm +, extra-cmake-modules , kcodecs, kconfig, kcoreaddons, kwindowsystem , libdbusmenu , phonon -, qtx11extras +, qttools, qtx11extras }: kdeFramework { name = "knotifications"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules qttools ]; propagatedBuildInputs = [ kcodecs kconfig kcoreaddons kwindowsystem libdbusmenu phonon qtx11extras ]; diff --git a/pkgs/development/libraries/kde-frameworks/knotifyconfig.nix b/pkgs/development/libraries/kde-frameworks/knotifyconfig.nix index b64f109f08b1..0e357aecb999 100644 --- a/pkgs/development/libraries/kde-frameworks/knotifyconfig.nix +++ b/pkgs/development/libraries/kde-frameworks/knotifyconfig.nix @@ -1,10 +1,10 @@ -{ kdeFramework, lib, ecm, kcompletion, kconfig +{ kdeFramework, lib, extra-cmake-modules, kcompletion, kconfig , ki18n, kio, phonon }: kdeFramework { name = "knotifyconfig"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; propagatedBuildInputs = [ kcompletion kconfig ki18n kio phonon ]; } diff --git a/pkgs/development/libraries/kde-frameworks/kpackage/default.nix b/pkgs/development/libraries/kde-frameworks/kpackage/default.nix index 86ca5935a75d..2953aea9a557 100644 --- a/pkgs/development/libraries/kde-frameworks/kpackage/default.nix +++ b/pkgs/development/libraries/kde-frameworks/kpackage/default.nix @@ -1,13 +1,13 @@ { kdeFramework, fetchurl, lib, copyPathsToStore, - ecm, kdoctools, + extra-cmake-modules, kdoctools, karchive, kconfig, kcoreaddons, ki18n }: kdeFramework { name = "kpackage"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm kdoctools ]; + nativeBuildInputs = [ extra-cmake-modules kdoctools ]; propagatedBuildInputs = [ karchive kconfig kcoreaddons ki18n ]; patches = copyPathsToStore (lib.readPathsFromFile ./. ./series); } diff --git a/pkgs/development/libraries/kde-frameworks/kparts.nix b/pkgs/development/libraries/kde-frameworks/kparts.nix index a46fa210b276..ad6ea2dbc305 100644 --- a/pkgs/development/libraries/kde-frameworks/kparts.nix +++ b/pkgs/development/libraries/kde-frameworks/kparts.nix @@ -1,4 +1,4 @@ -{ kdeFramework, lib, ecm, kconfig, kcoreaddons +{ kdeFramework, lib, extra-cmake-modules, kconfig, kcoreaddons , ki18n, kiconthemes, kio, kjobwidgets, knotifications, kservice , ktextwidgets, kwidgetsaddons, kxmlgui }: @@ -6,7 +6,7 @@ kdeFramework { name = "kparts"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; propagatedBuildInputs = [ kconfig kcoreaddons ki18n kiconthemes kio kjobwidgets knotifications kservice ktextwidgets kwidgetsaddons kxmlgui diff --git a/pkgs/development/libraries/kde-frameworks/kpeople.nix b/pkgs/development/libraries/kde-frameworks/kpeople.nix index 4ca9bc7fdbf9..6acb5e2eed51 100644 --- a/pkgs/development/libraries/kde-frameworks/kpeople.nix +++ b/pkgs/development/libraries/kde-frameworks/kpeople.nix @@ -1,11 +1,11 @@ -{ kdeFramework, lib, ecm, kcoreaddons, ki18n +{ kdeFramework, lib, extra-cmake-modules, kcoreaddons, ki18n , kitemviews, kservice, kwidgetsaddons, qtdeclarative }: kdeFramework { name = "kpeople"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; propagatedBuildInputs = [ kcoreaddons ki18n kitemviews kservice kwidgetsaddons qtdeclarative ]; diff --git a/pkgs/development/libraries/kde-frameworks/kplotting.nix b/pkgs/development/libraries/kde-frameworks/kplotting.nix index 6eda06445dc5..3fa8283d06c4 100644 --- a/pkgs/development/libraries/kde-frameworks/kplotting.nix +++ b/pkgs/development/libraries/kde-frameworks/kplotting.nix @@ -1,9 +1,10 @@ { kdeFramework, lib -, ecm +, extra-cmake-modules, qtbase }: kdeFramework { name = "kplotting"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; + buildInputs = [ qtbase ]; } diff --git a/pkgs/development/libraries/kde-frameworks/kpty.nix b/pkgs/development/libraries/kde-frameworks/kpty.nix index d42f96fb92c5..8bdaacb85f82 100644 --- a/pkgs/development/libraries/kde-frameworks/kpty.nix +++ b/pkgs/development/libraries/kde-frameworks/kpty.nix @@ -1,8 +1,8 @@ -{ kdeFramework, lib, ecm, kcoreaddons, ki18n }: +{ kdeFramework, lib, extra-cmake-modules, kcoreaddons, ki18n }: kdeFramework { name = "kpty"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; propagatedBuildInputs = [ kcoreaddons ki18n ]; } diff --git a/pkgs/development/libraries/kde-frameworks/kross.nix b/pkgs/development/libraries/kde-frameworks/kross.nix index ae098654eb11..0e66d95b5cce 100644 --- a/pkgs/development/libraries/kde-frameworks/kross.nix +++ b/pkgs/development/libraries/kde-frameworks/kross.nix @@ -1,4 +1,4 @@ -{ kdeFramework, lib, ecm, kcompletion, kcoreaddons +{ kdeFramework, lib, extra-cmake-modules, kcompletion, kcoreaddons , kdoctools, ki18n, kiconthemes, kio, kparts, kwidgetsaddons , kxmlgui, qtscript }: @@ -6,7 +6,7 @@ kdeFramework { name = "kross"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm kdoctools ]; + nativeBuildInputs = [ extra-cmake-modules kdoctools ]; propagatedBuildInputs = [ kcompletion kcoreaddons ki18n kiconthemes kio kparts kwidgetsaddons kxmlgui qtscript diff --git a/pkgs/development/libraries/kde-frameworks/krunner.nix b/pkgs/development/libraries/kde-frameworks/krunner.nix index 064a89e08067..ec9ab7abe9f9 100644 --- a/pkgs/development/libraries/kde-frameworks/krunner.nix +++ b/pkgs/development/libraries/kde-frameworks/krunner.nix @@ -1,4 +1,4 @@ -{ kdeFramework, lib, ecm, kconfig, kcoreaddons +{ kdeFramework, lib, extra-cmake-modules, kconfig, kcoreaddons , ki18n, kio, kservice, plasma-framework, solid , threadweaver }: @@ -6,7 +6,7 @@ kdeFramework { name = "krunner"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; propagatedBuildInputs = [ kconfig kcoreaddons ki18n kio kservice plasma-framework solid threadweaver diff --git a/pkgs/development/libraries/kde-frameworks/kservice/default.nix b/pkgs/development/libraries/kde-frameworks/kservice/default.nix index ca840fc8b71a..2751a7f5d6e0 100644 --- a/pkgs/development/libraries/kde-frameworks/kservice/default.nix +++ b/pkgs/development/libraries/kde-frameworks/kservice/default.nix @@ -1,13 +1,13 @@ { kdeFramework, lib, copyPathsToStore, - bison, ecm, flex, + bison, extra-cmake-modules, flex, kconfig, kcoreaddons, kcrash, kdbusaddons, kdoctools, ki18n, kwindowsystem }: kdeFramework { name = "kservice"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - propagatedNativeBuildInputs = [ bison ecm flex ]; + propagatedNativeBuildInputs = [ bison extra-cmake-modules flex ]; nativeBuildInputs = [ kdoctools ]; propagatedBuildInputs = [ kconfig kcoreaddons kcrash kdbusaddons ki18n kwindowsystem ]; patches = copyPathsToStore (lib.readPathsFromFile ./. ./series); diff --git a/pkgs/development/libraries/kde-frameworks/ktexteditor.nix b/pkgs/development/libraries/kde-frameworks/ktexteditor.nix index 0e444cc8db68..fbd73c65eff6 100644 --- a/pkgs/development/libraries/kde-frameworks/ktexteditor.nix +++ b/pkgs/development/libraries/kde-frameworks/ktexteditor.nix @@ -1,5 +1,5 @@ { kdeFramework, lib, copyPathsToStore -, ecm, perl +, extra-cmake-modules, perl , karchive, kconfig, kguiaddons, kiconthemes, kparts , libgit2 , qtscript, qtxmlpatterns @@ -9,7 +9,7 @@ kdeFramework { name = "ktexteditor"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm perl ]; + nativeBuildInputs = [ extra-cmake-modules perl ]; propagatedBuildInputs = [ karchive kconfig kguiaddons ki18n kiconthemes kio kparts libgit2 qtscript qtxmlpatterns sonnet syntax-highlighting diff --git a/pkgs/development/libraries/kde-frameworks/ktextwidgets.nix b/pkgs/development/libraries/kde-frameworks/ktextwidgets.nix index 3a1258e9a37b..25954c603971 100644 --- a/pkgs/development/libraries/kde-frameworks/ktextwidgets.nix +++ b/pkgs/development/libraries/kde-frameworks/ktextwidgets.nix @@ -1,4 +1,4 @@ -{ kdeFramework, lib, ecm, kcompletion, kconfig +{ kdeFramework, lib, extra-cmake-modules, kcompletion, kconfig , kconfigwidgets, ki18n, kiconthemes, kservice, kwindowsystem , sonnet }: @@ -6,7 +6,7 @@ kdeFramework { name = "ktextwidgets"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; propagatedBuildInputs = [ kcompletion kconfig kconfigwidgets ki18n kiconthemes kservice kwindowsystem sonnet diff --git a/pkgs/development/libraries/kde-frameworks/kunitconversion.nix b/pkgs/development/libraries/kde-frameworks/kunitconversion.nix index 136587cc682e..c04ded722aa4 100644 --- a/pkgs/development/libraries/kde-frameworks/kunitconversion.nix +++ b/pkgs/development/libraries/kde-frameworks/kunitconversion.nix @@ -1,8 +1,8 @@ -{ kdeFramework, lib, ecm, ki18n }: +{ kdeFramework, lib, extra-cmake-modules, ki18n }: kdeFramework { name = "kunitconversion"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; propagatedBuildInputs = [ ki18n ]; } diff --git a/pkgs/development/libraries/kde-frameworks/kwallet.nix b/pkgs/development/libraries/kde-frameworks/kwallet.nix index fb801f48b119..f02c6138df77 100644 --- a/pkgs/development/libraries/kde-frameworks/kwallet.nix +++ b/pkgs/development/libraries/kde-frameworks/kwallet.nix @@ -1,4 +1,4 @@ -{ kdeFramework, lib, ecm, kconfig, kconfigwidgets +{ kdeFramework, lib, extra-cmake-modules, kconfig, kconfigwidgets , kcoreaddons , kdbusaddons, kdoctools, ki18n, kiconthemes , knotifications , kservice, kwidgetsaddons, kwindowsystem, libgcrypt }: @@ -6,7 +6,7 @@ kdeFramework { name = "kwallet"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm kdoctools ]; + nativeBuildInputs = [ extra-cmake-modules kdoctools ]; propagatedBuildInputs = [ kconfig kconfigwidgets kcoreaddons kdbusaddons ki18n kiconthemes knotifications kservice kwidgetsaddons kwindowsystem libgcrypt diff --git a/pkgs/development/libraries/kde-frameworks/kwayland.nix b/pkgs/development/libraries/kde-frameworks/kwayland.nix index c530bf80a90e..b5255022a86d 100644 --- a/pkgs/development/libraries/kde-frameworks/kwayland.nix +++ b/pkgs/development/libraries/kde-frameworks/kwayland.nix @@ -1,13 +1,14 @@ { kdeFramework -, ecm -, wayland +, extra-cmake-modules +, qtbase, wayland }: kdeFramework { name = "kwayland"; nativeBuildInputs = [ - ecm + extra-cmake-modules ]; + buildInputs = [ qtbase ]; propagatedBuildInputs = [ wayland ]; diff --git a/pkgs/development/libraries/kde-frameworks/kwidgetsaddons.nix b/pkgs/development/libraries/kde-frameworks/kwidgetsaddons.nix index ae34e60c4c12..c5c0063c4634 100644 --- a/pkgs/development/libraries/kde-frameworks/kwidgetsaddons.nix +++ b/pkgs/development/libraries/kde-frameworks/kwidgetsaddons.nix @@ -1,9 +1,10 @@ { kdeFramework, lib -, ecm +, extra-cmake-modules, qtbase, qttools }: kdeFramework { name = "kwidgetsaddons"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules qttools ]; + buildInputs = [ qtbase ]; } diff --git a/pkgs/development/libraries/kde-frameworks/kwindowsystem.nix b/pkgs/development/libraries/kde-frameworks/kwindowsystem.nix index 64186a30eadc..e55c4021b9ed 100644 --- a/pkgs/development/libraries/kde-frameworks/kwindowsystem.nix +++ b/pkgs/development/libraries/kde-frameworks/kwindowsystem.nix @@ -1,11 +1,11 @@ { kdeFramework, lib -, ecm -, qtx11extras +, extra-cmake-modules +, qttools, qtx11extras }: kdeFramework { name = "kwindowsystem"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules qttools ]; propagatedBuildInputs = [ qtx11extras ]; } diff --git a/pkgs/development/libraries/kde-frameworks/kxmlgui.nix b/pkgs/development/libraries/kde-frameworks/kxmlgui.nix index c48fc9efdfad..ea800bf58ae0 100644 --- a/pkgs/development/libraries/kde-frameworks/kxmlgui.nix +++ b/pkgs/development/libraries/kde-frameworks/kxmlgui.nix @@ -1,4 +1,4 @@ -{ kdeFramework, lib, ecm, attica, kconfig +{ kdeFramework, lib, extra-cmake-modules, attica, kconfig , kconfigwidgets, kglobalaccel, ki18n, kiconthemes, kitemviews , ktextwidgets, kwindowsystem, sonnet }: @@ -6,7 +6,7 @@ kdeFramework { name = "kxmlgui"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; propagatedBuildInputs = [ attica kconfig kconfigwidgets kglobalaccel ki18n kiconthemes kitemviews ktextwidgets kwindowsystem sonnet diff --git a/pkgs/development/libraries/kde-frameworks/kxmlrpcclient.nix b/pkgs/development/libraries/kde-frameworks/kxmlrpcclient.nix index 31301875351f..f20f4a223945 100644 --- a/pkgs/development/libraries/kde-frameworks/kxmlrpcclient.nix +++ b/pkgs/development/libraries/kde-frameworks/kxmlrpcclient.nix @@ -1,8 +1,8 @@ -{ kdeFramework, lib, ecm, ki18n, kio }: +{ kdeFramework, lib, extra-cmake-modules, ki18n, kio }: kdeFramework { name = "kxmlrpcclient"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; propagatedBuildInputs = [ ki18n kio ]; } diff --git a/pkgs/development/libraries/kde-frameworks/modemmanager-qt.nix b/pkgs/development/libraries/kde-frameworks/modemmanager-qt.nix index bf3487dcb391..b4d05678dc2f 100644 --- a/pkgs/development/libraries/kde-frameworks/modemmanager-qt.nix +++ b/pkgs/development/libraries/kde-frameworks/modemmanager-qt.nix @@ -1,11 +1,12 @@ { kdeFramework, lib -, ecm -, modemmanager +, extra-cmake-modules +, modemmanager, qtbase }: kdeFramework { name = "modemmanager-qt"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; + buildInputs = [ qtbase ]; propagatedBuildInputs = [ modemmanager ]; } diff --git a/pkgs/development/libraries/kde-frameworks/networkmanager-qt.nix b/pkgs/development/libraries/kde-frameworks/networkmanager-qt.nix index bb5968635388..9d765eac95cc 100644 --- a/pkgs/development/libraries/kde-frameworks/networkmanager-qt.nix +++ b/pkgs/development/libraries/kde-frameworks/networkmanager-qt.nix @@ -1,11 +1,12 @@ { kdeFramework, lib -, ecm -, networkmanager +, extra-cmake-modules +, qtbase, networkmanager }: kdeFramework { name = "networkmanager-qt"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; + buildInputs = [ qtbase ]; propagatedBuildInputs = [ networkmanager ]; } diff --git a/pkgs/development/libraries/kde-frameworks/oxygen-icons5.nix b/pkgs/development/libraries/kde-frameworks/oxygen-icons5.nix index 42978b46992d..1d45b51274c5 100644 --- a/pkgs/development/libraries/kde-frameworks/oxygen-icons5.nix +++ b/pkgs/development/libraries/kde-frameworks/oxygen-icons5.nix @@ -1,6 +1,6 @@ { kdeFramework , lib -, ecm +, extra-cmake-modules, qtbase }: kdeFramework { @@ -10,5 +10,6 @@ kdeFramework { maintainers = [ lib.maintainers.ttuegel ]; }; outputs = [ "out" ]; - nativeBuildInputs = [ ecm ]; + nativeBuildInputs = [ extra-cmake-modules ]; + buildInputs = [ qtbase ]; } diff --git a/pkgs/development/libraries/kde-frameworks/plasma-framework.nix b/pkgs/development/libraries/kde-frameworks/plasma-framework.nix index 963e93227279..2fd667af0dc1 100644 --- a/pkgs/development/libraries/kde-frameworks/plasma-framework.nix +++ b/pkgs/development/libraries/kde-frameworks/plasma-framework.nix @@ -1,4 +1,4 @@ -{ kdeFramework, lib, fetchurl, ecm, kactivities, karchive +{ kdeFramework, lib, fetchurl, extra-cmake-modules, kactivities, karchive , kconfig, kconfigwidgets, kcoreaddons, kdbusaddons, kdeclarative , kdoctools, kglobalaccel, kguiaddons, ki18n, kiconthemes, kio , knotifications, kpackage, kservice, kwayland, kwindowsystem, kxmlgui @@ -8,7 +8,7 @@ kdeFramework { name = "plasma-framework"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm kdoctools ]; + nativeBuildInputs = [ extra-cmake-modules kdoctools ]; propagatedBuildInputs = [ kactivities karchive kconfig kconfigwidgets kcoreaddons kdbusaddons kdeclarative kglobalaccel kguiaddons ki18n kiconthemes kio knotifications diff --git a/pkgs/development/libraries/kde-frameworks/solid.nix b/pkgs/development/libraries/kde-frameworks/solid.nix index de10a7345581..330b64035a12 100644 --- a/pkgs/development/libraries/kde-frameworks/solid.nix +++ b/pkgs/development/libraries/kde-frameworks/solid.nix @@ -1,12 +1,12 @@ { kdeFramework, lib, - bison, ecm, flex, - qtdeclarative + bison, extra-cmake-modules, flex, + qtdeclarative, qttools }: kdeFramework { name = "solid"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ bison ecm flex ]; + nativeBuildInputs = [ bison extra-cmake-modules flex qttools ]; propagatedBuildInputs = [ qtdeclarative ]; } diff --git a/pkgs/development/libraries/kde-frameworks/sonnet.nix b/pkgs/development/libraries/kde-frameworks/sonnet.nix index 8b1cf6a2cd11..190f2bae1b82 100644 --- a/pkgs/development/libraries/kde-frameworks/sonnet.nix +++ b/pkgs/development/libraries/kde-frameworks/sonnet.nix @@ -1,11 +1,11 @@ { kdeFramework, lib -, ecm -, hunspell +, extra-cmake-modules +, hunspell, qtbase, qttools }: kdeFramework { name = "sonnet"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm ]; - buildInputs = [ hunspell ]; + nativeBuildInputs = [ extra-cmake-modules qttools ]; + buildInputs = [ hunspell qtbase ]; } diff --git a/pkgs/development/libraries/kde-frameworks/syntax-highlighting.nix b/pkgs/development/libraries/kde-frameworks/syntax-highlighting.nix index 24b1bbc4f674..155e9fb8961b 100644 --- a/pkgs/development/libraries/kde-frameworks/syntax-highlighting.nix +++ b/pkgs/development/libraries/kde-frameworks/syntax-highlighting.nix @@ -1,9 +1,10 @@ { kdeFramework, lib -, ecm, perl +, extra-cmake-modules, perl, qtbase, qttools }: kdeFramework { name = "syntax-highlighting"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; - nativeBuildInputs = [ ecm perl ]; + nativeBuildInputs = [ extra-cmake-modules perl qttools ]; + buildInputs = [ qtbase ]; } diff --git a/pkgs/development/libraries/kde-frameworks/threadweaver.nix b/pkgs/development/libraries/kde-frameworks/threadweaver.nix index 6d3dff604132..bf36a21e9ec6 100644 --- a/pkgs/development/libraries/kde-frameworks/threadweaver.nix +++ b/pkgs/development/libraries/kde-frameworks/threadweaver.nix @@ -1,9 +1,10 @@ { kdeFramework, lib -, ecm +, extra-cmake-modules, qtbase }: kdeFramework { name = "threadweaver"; - nativeBuildInputs = [ ecm ]; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; + nativeBuildInputs = [ extra-cmake-modules ]; + buildInputs = [ qtbase ]; } diff --git a/pkgs/development/libraries/kdevplatform/default.nix b/pkgs/development/libraries/kdevplatform/default.nix deleted file mode 100644 index 549be9a71f50..000000000000 --- a/pkgs/development/libraries/kdevplatform/default.nix +++ /dev/null @@ -1,35 +0,0 @@ -{ stdenv, fetchurl, cmake, kdelibs, subversion, qt4, automoc4, phonon, - gettext, pkgconfig, apr, aprutil, boost, qjson, grantlee }: - -stdenv.mkDerivation rec { - name = "kdevplatform-1.7.3"; - - src = fetchurl { - url = "mirror://kde/stable/kdevelop/4.7.3/src/${name}.tar.bz2"; - sha256 = "195134bde11672de38838f4b341ed28c58042374ca12beedacca9d30e6ab4a2b"; - }; - - patches = [ - ./gettext.patch # build error caused by CMake update - ./dependency.patch # build error: https://phabricator.kde.org/D1160 - ]; - - propagatedBuildInputs = [ kdelibs qt4 phonon ]; - buildInputs = [ apr aprutil subversion boost qjson grantlee ]; - - nativeBuildInputs = [ cmake automoc4 gettext pkgconfig ]; - - enableParallelBuilding = false; - - meta = with stdenv.lib; { - maintainers = [ maintainers.ambrop72 ]; - platforms = platforms.linux; - description = "KDE libraries for IDE-like programs"; - longDescription = '' - A free, opensource set of libraries that can be used as a foundation for - IDE-like programs. It is programing-language independent, and is planned - to be used by programs like: KDevelop, Quanta, Kile, KTechLab ... etc." - ''; - homepage = https://www.kdevelop.org; - }; -} diff --git a/pkgs/development/libraries/kdevplatform/dependency.patch b/pkgs/development/libraries/kdevplatform/dependency.patch deleted file mode 100644 index 3205b4cab675..000000000000 --- a/pkgs/development/libraries/kdevplatform/dependency.patch +++ /dev/null @@ -1,12 +0,0 @@ -diff --git a/plugins/filetemplates/CMakeLists.txt b/plugins/filetemplates/CMakeLists.txt ---- a/plugins/filetemplates/CMakeLists.txt -+++ b/plugins/filetemplates/CMakeLists.txt -@@ -81,6 +81,7 @@ - ) - - kde4_add_executable(testfiletemplates ${test_srcs}) -+add_dependencies(testfiletemplates kdevfiletemplates) - - target_link_libraries(testfiletemplates - ${KDE4_KDECORE_LIBS} - diff --git a/pkgs/development/libraries/kdevplatform/gettext.patch b/pkgs/development/libraries/kdevplatform/gettext.patch deleted file mode 100644 index 733a542e0c8b..000000000000 --- a/pkgs/development/libraries/kdevplatform/gettext.patch +++ /dev/null @@ -1,8 +0,0 @@ -diff -urN kdevplatform-1.7.3.orig/po/CMakeLists.txt kdevplatform-1.7.3/po/CMakeLists.txt ---- kdevplatform-1.7.3.orig/po/CMakeLists.txt 2016-03-04 23:25:30.102112596 +0100 -+++ kdevplatform-1.7.3/po/CMakeLists.txt 2016-03-04 23:26:06.242570024 +0100 -@@ -1,3 +1,4 @@ -+cmake_policy(SET CMP0002 OLD) - find_package(Gettext REQUIRED) - if (NOT GETTEXT_MSGMERGE_EXECUTABLE) - MESSAGE(FATAL_ERROR "Please install msgmerge binary") diff --git a/pkgs/development/libraries/kirigami/default.nix b/pkgs/development/libraries/kirigami/default.nix index 0fd80d7fa538..66e67e6b8538 100644 --- a/pkgs/development/libraries/kirigami/default.nix +++ b/pkgs/development/libraries/kirigami/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchurl, cmake, ecm, pkgconfig, plasma-framework, qtbase, qtquickcontrols }: +{ stdenv, fetchurl, cmake, extra-cmake-modules, pkgconfig, plasma-framework, qtbase, qtquickcontrols }: stdenv.mkDerivation rec { pname = "kirigami"; @@ -12,7 +12,7 @@ stdenv.mkDerivation rec { buildInputs = [ qtbase qtquickcontrols plasma-framework ]; - nativeBuildInputs = [ cmake pkgconfig ecm ]; + nativeBuildInputs = [ cmake pkgconfig extra-cmake-modules ]; meta = with stdenv.lib; { license = licenses.lgpl2; diff --git a/pkgs/development/libraries/kirigami/v2.nix b/pkgs/development/libraries/kirigami/v2.nix index 8476eebfd501..0b332d40329d 100644 --- a/pkgs/development/libraries/kirigami/v2.nix +++ b/pkgs/development/libraries/kirigami/v2.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchurl, cmake, ecm, pkgconfig, plasma-framework, qtbase, qtquickcontrols2 }: +{ stdenv, fetchurl, cmake, extra-cmake-modules, pkgconfig, plasma-framework, qtbase, qtquickcontrols2 }: stdenv.mkDerivation rec { pname = "kirigami"; @@ -12,12 +12,13 @@ stdenv.mkDerivation rec { buildInputs = [ qtbase qtquickcontrols2 plasma-framework ]; - nativeBuildInputs = [ cmake pkgconfig ecm ]; + nativeBuildInputs = [ cmake pkgconfig extra-cmake-modules ]; meta = with stdenv.lib; { license = licenses.lgpl2; homepage = http://www.kde.org; maintainers = with maintainers; [ ttuegel peterhoeg ]; platforms = platforms.unix; + broken = builtins.compareVersions qtbase.version "5.7.0" < 0; }; } diff --git a/pkgs/development/libraries/libalkimia/default.nix b/pkgs/development/libraries/libalkimia/default.nix deleted file mode 100644 index bcb699da828f..000000000000 --- a/pkgs/development/libraries/libalkimia/default.nix +++ /dev/null @@ -1,19 +0,0 @@ -{ stdenv, fetchurl, automoc4, cmake, perl, pkgconfig, kdelibs, gmpxx }: - -stdenv.mkDerivation rec { - name = "libalkimia-4.3.2"; - - src = fetchurl { - url = "http://kde-apps.org/CONTENT/content-files/137323-${name}.tar.bz2"; - sha256 = "1p7bzi6mz5ymsfsxikk8m1cvi35zirb4fps9axkqlm6mjbwrldv4"; - }; - - patchPhase = "sed -e 's/KDE4_DATA_DIR/DATA_INSTALL_DIR/' -i CMakeLists.txt"; - nativeBuildInputs = [ automoc4 cmake perl pkgconfig ]; - buildInputs = [ kdelibs gmpxx ]; - - meta = { - maintainers = [ stdenv.lib.maintainers.urkud ]; - inherit (kdelibs.meta) platforms; - }; -} diff --git a/pkgs/development/libraries/libcanberra/default.nix b/pkgs/development/libraries/libcanberra/default.nix index 8e3523a27e9f..25be48026992 100644 --- a/pkgs/development/libraries/libcanberra/default.nix +++ b/pkgs/development/libraries/libcanberra/default.nix @@ -1,5 +1,5 @@ { stdenv, fetchurl, pkgconfig, libtool, gtk ? null, libcap -, alsaLib, libpulseaudio, gstreamer, gst_plugins_base, libvorbis }: +, alsaLib, libpulseaudio, gstreamer, gst-plugins-base, libvorbis }: stdenv.mkDerivation rec { name = "libcanberra-0.30"; @@ -11,7 +11,7 @@ stdenv.mkDerivation rec { buildInputs = [ pkgconfig libtool alsaLib libpulseaudio libvorbis gtk libcap - /*gstreamer gst_plugins_base*/ # ToDo: gstreamer not found (why?), add (g)udev? + /*gstreamer gst-plugins-base*/ # ToDo: gstreamer not found (why?), add (g)udev? ]; configureFlags = "--disable-oss"; diff --git a/pkgs/development/libraries/libcec/default.nix b/pkgs/development/libraries/libcec/default.nix index 7811eff6fe2d..115ea6636394 100644 --- a/pkgs/development/libraries/libcec/default.nix +++ b/pkgs/development/libraries/libcec/default.nix @@ -1,13 +1,13 @@ { stdenv, fetchurl, cmake, pkgconfig, udev, libcec_platform }: -let version = "3.1.0"; in +let version = "4.0.2"; in stdenv.mkDerivation { name = "libcec-${version}"; src = fetchurl { url = "https://github.com/Pulse-Eight/libcec/archive/libcec-${version}.tar.gz"; - sha256 = "08gr4rhx7qh8ajkry9j0sqw11i74y802dla1wg4l4gxhl4hrs409"; + sha256 = "09xsw9hfymzl9fi9r2r8n5cxk80fc00x9drsy1r59pgbycqxvf5q"; }; buildInputs = [ cmake pkgconfig udev libcec_platform ]; diff --git a/pkgs/development/libraries/libktorrent/5.nix b/pkgs/development/libraries/libktorrent/5.nix deleted file mode 100644 index e5406d3a2a58..000000000000 --- a/pkgs/development/libraries/libktorrent/5.nix +++ /dev/null @@ -1,29 +0,0 @@ -{ stdenv, fetchurl, cmake, ecm -, karchive, kcrash, ki18n, kio, solid -, boost, gmp, qca-qt5, libgcrypt -}: - -stdenv.mkDerivation rec { - name = "libktorrent-2.0.1"; - - src = fetchurl { - url = http://download.kde.org/stable/ktorrent/5.0/libktorrent-2.0.1.tar.xz; - sha256 = "0hiz4wm8jkymp24r6f1g8svj3pw9qspbjajf512m3j8s3bhrw3f7"; - }; - - outputs = [ "out" "dev" ]; - - nativeBuildInputs = [ cmake ecm ]; - buildInputs = [ karchive kcrash ki18n kio solid qca-qt5 libgcrypt ]; - - propagatedBuildInputs = [ gmp boost ]; - - enableParallelBuilding = true; - - meta = { - description = "A BitTorrent library used by KTorrent"; - homepage = https://www.kde.org/applications/internet/ktorrent/; - maintainers = [ stdenv.lib.maintainers.eelco ]; - platforms = stdenv.lib.platforms.linux; - }; -} diff --git a/pkgs/development/libraries/libktorrent/default.nix b/pkgs/development/libraries/libktorrent/default.nix index 9e7fb0a0b3d5..8b9778b269d1 100644 --- a/pkgs/development/libraries/libktorrent/default.nix +++ b/pkgs/development/libraries/libktorrent/default.nix @@ -1,28 +1,29 @@ -{ stdenv, fetchurl, kdelibs, cmake, gmp, qca2, boost, gettext, qt4, automoc4 -, phonon, libgcrypt }: +{ stdenv, fetchurl, cmake, extra-cmake-modules +, karchive, kcrash, ki18n, kio, solid +, boost, gmp, qca-qt5, libgcrypt +}: -let - mp_ = "3.1"; - version = "1.${mp_}"; - version4 = "4.${mp_}"; -in stdenv.mkDerivation rec { - name = pname + "-" + version; - pname = "libktorrent"; + name = "libktorrent-2.0.1"; src = fetchurl { - url = "${meta.homepage}/downloads/${version4}/${name}.tar.bz2"; - sha256 = "2fe11ccb4bf2028c3da11e52cde890f1b3a90560e548eac89a4f8e1558b09725"; + url = http://download.kde.org/stable/ktorrent/5.0/libktorrent-2.0.1.tar.xz; + sha256 = "0hiz4wm8jkymp24r6f1g8svj3pw9qspbjajf512m3j8s3bhrw3f7"; }; - nativeBuildInputs = [ cmake automoc4 gettext ]; - buildInputs = [ kdelibs phonon gmp qca2 boost libgcrypt ]; + outputs = [ "out" "dev" ]; + + nativeBuildInputs = [ cmake extra-cmake-modules ]; + buildInputs = [ karchive kcrash ki18n kio solid qca-qt5 libgcrypt ]; + + propagatedBuildInputs = [ gmp boost ]; enableParallelBuilding = true; meta = { description = "A BitTorrent library used by KTorrent"; - homepage = http://ktorrent.pwsp.net; - inherit (kdelibs.meta) platforms; + homepage = https://www.kde.org/applications/internet/ktorrent/; + maintainers = [ stdenv.lib.maintainers.eelco ]; + platforms = stdenv.lib.platforms.linux; }; } diff --git a/pkgs/development/libraries/libkvkontakte/default.nix b/pkgs/development/libraries/libkvkontakte/default.nix deleted file mode 100644 index e43116aebc19..000000000000 --- a/pkgs/development/libraries/libkvkontakte/default.nix +++ /dev/null @@ -1,21 +0,0 @@ -{ stdenv, fetchgit, automoc4, cmake, pkgconfig, qjson, kdelibs }: - -stdenv.mkDerivation { - name = "libkvkontakte-1.0-pre20120103"; - - src = fetchgit { - url = git://anongit.kde.org/libkvkontakte; - rev = "4024f69cf54625dbe5dc2e2d811a996774a669ff"; - sha256 = "1ly95bc72a4zjqhr03liciqpi2hp8x4gqzm4gzr8alfysv2jvxbb"; - }; - - nativeBuildInputs = [ automoc4 cmake pkgconfig ]; - buildInputs = [ qjson kdelibs ]; - - meta = { - homepage = https://projects.kde.org/projects/extragear/libs/libkvkontakte; - description = "KDE library for interaction with vkontakte.ru social network via its open API"; - maintainers = [ stdenv.lib.maintainers.urkud ]; - inherit (kdelibs.meta) platforms; - }; -} diff --git a/pkgs/development/libraries/liblikeback/default.nix b/pkgs/development/libraries/liblikeback/default.nix deleted file mode 100644 index 46f389ec7ada..000000000000 --- a/pkgs/development/libraries/liblikeback/default.nix +++ /dev/null @@ -1,20 +0,0 @@ -{ stdenv, fetchgit, cmake, kdelibs, automoc4 }: - -stdenv.mkDerivation rec { - name = "liblikeback-20110103"; - - src = fetchgit { - url = git://anongit.kde.org/liblikeback.git; - rev = "eeb037ae16b6aad8d73cbd6f57198aa111a88628"; - sha256 = "1p3c8hqfcbhjfyn1kj636kq52nb3vapfakmqvp2wklpljyq38f3z"; - }; - - buildInputs = [ cmake kdelibs automoc4 ]; - - meta = { - description = "Simple feedback button/dialog for KDE 4.x applications"; - homepage = https://projects.kde.org/projects/playground/libs/liblikeback; - maintainers = [ stdenv.lib.maintainers.urkud ]; - inherit (kdelibs.meta) platforms; - }; -} diff --git a/pkgs/development/libraries/libmm-qt/default.nix b/pkgs/development/libraries/libmm-qt/default.nix deleted file mode 100644 index 3515d8388a27..000000000000 --- a/pkgs/development/libraries/libmm-qt/default.nix +++ /dev/null @@ -1,31 +0,0 @@ -{ stdenv, fetchurl, cmake, pkgconfig, qt4, doxygen, modemmanager }: - -let - pname = "libmm-qt"; - version = "1.0.1"; - name = "${pname}-${version}"; -in -stdenv.mkDerivation { - inherit name; - - buildInputs = [ - cmake - pkgconfig - qt4 - doxygen - ]; - - propagatedBuildInputs = [ modemmanager ]; - - src = fetchurl { - url = "mirror://kde/unstable/modemmanager-qt/${version}/src/${name}-1.tar.xz"; - sha256 = "0ad57815a904ddb2660a7327c0bda5da47a2a60ce57b2b12f4aaff99b174f74a"; - }; - - meta = with stdenv.lib; { - homepage = "https://projects.kde.org/projects/extragear/libs/libmm-qt"; - description = "Qt wrapper for ModemManager DBus API"; - license = licenses.lgpl21; - platforms = platforms.linux; - }; -} diff --git a/pkgs/development/libraries/libnm-qt/default.nix b/pkgs/development/libraries/libnm-qt/default.nix deleted file mode 100644 index b9d033235cb4..000000000000 --- a/pkgs/development/libraries/libnm-qt/default.nix +++ /dev/null @@ -1,33 +0,0 @@ -{ stdenv, fetchurl, cmake, pkgconfig, qt4, networkmanager, libmm-qt }: - -let - pname = "libnm-qt"; - version = "0.9.8.2"; - name = "${pname}-${version}"; -in -stdenv.mkDerivation { - inherit name; - - buildInputs = [ - cmake - pkgconfig - qt4 - networkmanager - ]; - - cmakeFlags = [ "-DCMAKE_INSTALL_LIBDIR=lib" ]; - - propagatedBuildInputs = [ libmm-qt ]; - - src = fetchurl { - url = "mirror://kde/unstable/networkmanager-qt/${version}/src/${name}.tar.xz"; - sha256 = "118fa4732536677f889b2776ec45bd0c726f26abcb8e8b6f8dfcaee265475f33"; - }; - - meta = with stdenv.lib; { - homepage = "https://projects.kde.org/projects/extragear/libs/libnm-qt"; - description = "Qt wrapper for NetworkManager DBus API"; - license = licenses.lgpl21; - platforms = platforms.linux; - }; -} diff --git a/pkgs/development/libraries/libplist/default.nix b/pkgs/development/libraries/libplist/default.nix index 4de5a23569e8..b98fdbdb470d 100644 --- a/pkgs/development/libraries/libplist/default.nix +++ b/pkgs/development/libraries/libplist/default.nix @@ -28,5 +28,12 @@ in stdenv.mkDerivation rec { homepage = http://github.com/JonathanBeck/libplist; platforms = stdenv.lib.platforms.all; maintainers = [ stdenv.lib.maintainers.urkud ]; + knownVulnerabilities = [ + "CVE-2017-5209: base64decode function in base64.c allows attackers to obtain sensitive information from process memory or cause a denial of service" + "CVE-2017-5545: attackers to obtain sensitive information from process memory or cause a denial of service" + "CVE-2017-5834: A heap-buffer overflow in parse_dict_node" + "CVE-2017-5835: A memory allocation error leading to DoS" + "CVE-2017-5836: A type inconsistency in bplist.c" + ]; }; } diff --git a/pkgs/development/libraries/mlt/qt-4.nix b/pkgs/development/libraries/mlt/qt-4.nix deleted file mode 100644 index 2bb709612b44..000000000000 --- a/pkgs/development/libraries/mlt/qt-4.nix +++ /dev/null @@ -1,39 +0,0 @@ -{ stdenv, fetchurl, SDL, ffmpeg, frei0r, libjack2, libdv, libsamplerate -, libvorbis, libxml2, makeWrapper, movit, pkgconfig, qt, sox -}: - -stdenv.mkDerivation rec { - name = "mlt-${version}"; - version = "0.9.6"; - - src = fetchurl { - url = "https://github.com/mltframework/mlt/archive/v${version}.tar.gz"; - sha256 = "0s8ypg0q50zfcmq527y8cbdvzxhiqidm1923k28ar8jqmjp45ssh"; - }; - - buildInputs = [ - SDL ffmpeg frei0r libjack2 libdv libsamplerate libvorbis libxml2 - makeWrapper movit pkgconfig qt sox - ]; - - # Mostly taken from: - # http://www.kdenlive.org/user-manual/downloading-and-installing-kdenlive/installing-source/installing-mlt-rendering-engine - configureFlags = [ - "--avformat-swscale" "--enable-gpl" "--enable-gpl" "--enable-gpl3" - "--enable-opengl" - ]; - - enableParallelBuilding = true; - - postInstall = '' - wrapProgram $out/bin/melt --prefix FREI0R_PATH : ${frei0r}/lib/frei0r-1 - ''; - - meta = with stdenv.lib; { - description = "Open source multimedia framework, designed for television broadcasting"; - homepage = http://www.mltframework.org/; - license = licenses.gpl3; - maintainers = [ maintainers.goibhniu ]; - platforms = platforms.linux; - }; -} diff --git a/pkgs/development/libraries/mp4v2/A00-nero-vobsub.patch b/pkgs/development/libraries/mp4v2/A00-nero-vobsub.patch deleted file mode 100644 index beb8be6d892d..000000000000 --- a/pkgs/development/libraries/mp4v2/A00-nero-vobsub.patch +++ /dev/null @@ -1,142 +0,0 @@ -diff -Naur mp4v2-trunk-r355/include/mp4v2/general.h mp4v2-trunk-r355/include/mp4v2/general.h ---- mp4v2-trunk-r355/include/mp4v2/general.h 2009-05-23 06:09:58.000000000 -0700 -+++ mp4v2-trunk-r355/include/mp4v2/general.h 2010-05-23 14:22:21.949288657 -0700 -@@ -75,6 +75,7 @@ - #define MP4_CNTL_TRACK_TYPE "cntl" /**< Constant: control track. */ - #define MP4_TEXT_TRACK_TYPE "text" /**< Constant: text track. */ - #define MP4_SUBTITLE_TRACK_TYPE "sbtl" /**< Constant: subtitle track. */ -+#define MP4_SUBPIC_TRACK_TYPE "subp" /**< Constant: subtitle track. */ - /* - * This second set of track types should be created - * via MP4AddSystemsTrack(type) -diff -Naur mp4v2-trunk-r355/include/mp4v2/track.h mp4v2-trunk-r355/include/mp4v2/track.h ---- mp4v2-trunk-r355/include/mp4v2/track.h 2009-05-23 06:21:49.000000000 -0700 -+++ mp4v2-trunk-r355/include/mp4v2/track.h 2010-05-23 15:43:47.249286008 -0700 -@@ -310,6 +310,13 @@ - uint16_t height ); - - MP4V2_EXPORT -+MP4TrackId MP4AddSubpicTrack( -+ MP4FileHandle hFile, -+ uint32_t timescale, -+ uint16_t width, -+ uint16_t height ); -+ -+MP4V2_EXPORT - MP4TrackId MP4AddPixelAspectRatio( - MP4FileHandle hFile, - MP4TrackId refTrackId, -diff -Naur mp4v2-trunk-r355/src/descriptors.h mp4v2-trunk-r355/src/descriptors.h ---- mp4v2-trunk-r355/src/descriptors.h 2009-05-20 19:52:32.000000000 -0700 -+++ mp4v2-trunk-r355/src/descriptors.h 2010-05-23 16:29:34.800935677 -0700 -@@ -119,6 +119,7 @@ - // ES objectTypeId - const uint8_t MP4SystemsV1ObjectType = 0x01; - const uint8_t MP4SystemsV2ObjectType = 0x02; -+const uint8_t MP4SubpicObjectType = 0xe0; - - // ES streamType - const uint8_t MP4ObjectDescriptionStreamType = 0x01; -@@ -131,6 +132,7 @@ - const uint8_t MP4OCIStreamType = 0x08; - const uint8_t MP4MPEGJStreamType = 0x09; - const uint8_t MP4UserPrivateStreamType = 0x20; -+const uint8_t MP4NeroSubpicStreamType = 0x38; - - /////////////////////////////////////////////////////////////////////////////// - -diff -Naur mp4v2-trunk-r355/src/mp4.cpp mp4v2-trunk-r355/src/mp4.cpp ---- mp4v2-trunk-r355/src/mp4.cpp 2009-05-23 06:29:37.000000000 -0700 -+++ mp4v2-trunk-r355/src/mp4.cpp 2010-05-23 15:45:28.852222074 -0700 -@@ -1174,6 +1174,23 @@ - return MP4_INVALID_TRACK_ID; - } - -+ MP4TrackId MP4AddSubpicTrack(MP4FileHandle hFile, -+ uint32_t timescale, -+ uint16_t width, -+ uint16_t height) -+ { -+ if (MP4_IS_VALID_FILE_HANDLE(hFile)) { -+ try { -+ return ((MP4File*)hFile)->AddSubpicTrack(timescale, width, height); -+ } -+ catch (MP4Error* e) { -+ PRINT_ERROR(e); -+ delete e; -+ } -+ } -+ return MP4_INVALID_TRACK_ID; -+ } -+ - MP4TrackId MP4AddChapterTextTrack( - MP4FileHandle hFile, MP4TrackId refTrackId, uint32_t timescale) - { -diff -Naur mp4v2-trunk-r355/src/mp4file.cpp mp4v2-trunk-r355/src/mp4file.cpp ---- mp4v2-trunk-r355/src/mp4file.cpp 2009-05-26 19:34:56.000000000 -0700 -+++ mp4v2-trunk-r355/src/mp4file.cpp 2010-05-23 16:32:52.654220633 -0700 -@@ -2095,6 +2095,50 @@ - return trackId; - } - -+MP4TrackId MP4File::AddSubpicTrack(uint32_t timescale, -+ uint16_t width, -+ uint16_t height) -+{ -+ MP4TrackId trackId = -+ AddTrack(MP4_SUBPIC_TRACK_TYPE, timescale); -+ -+ InsertChildAtom(MakeTrackName(trackId, "mdia.minf"), "nmhd", 0); -+ -+ (void)AddChildAtom(MakeTrackName(trackId, "mdia.minf.stbl.stsd"), "mp4s"); -+ -+ SetTrackFloatProperty(trackId, "tkhd.width", width); -+ SetTrackFloatProperty(trackId, "tkhd.height", height); -+ SetTrackIntegerProperty(trackId, "tkhd.layer", 0); -+ -+ // stsd is a unique beast in that it has a count of the number -+ // of child atoms that needs to be incremented after we add the mp4s atom -+ MP4Integer32Property* pStsdCountProperty; -+ FindIntegerProperty( -+ MakeTrackName(trackId, "mdia.minf.stbl.stsd.entryCount"), -+ (MP4Property**)&pStsdCountProperty); -+ pStsdCountProperty->IncrementValue(); -+ -+ SetTrackIntegerProperty(trackId, -+ "mdia.minf.stbl.stsd.mp4s.esds.ESID", -+#if 0 -+ // note - for a file, these values need to -+ // be 0 - wmay - 04/16/2003 -+ trackId -+#else -+ 0 -+#endif -+ ); -+ -+ SetTrackIntegerProperty(trackId, -+ "mdia.minf.stbl.stsd.mp4s.esds.decConfigDescr.objectTypeId", -+ MP4SubpicObjectType); -+ -+ SetTrackIntegerProperty(trackId, -+ "mdia.minf.stbl.stsd.mp4s.esds.decConfigDescr.streamType", -+ MP4NeroSubpicStreamType); -+ return trackId; -+} -+ - MP4TrackId MP4File::AddChapterTextTrack(MP4TrackId refTrackId, uint32_t timescale) - { - // validate reference track id -diff -Naur mp4v2-trunk-r355/src/mp4file.h mp4v2-trunk-r355/src/mp4file.h ---- mp4v2-trunk-r355/src/mp4file.h 2009-05-23 06:29:37.000000000 -0700 -+++ mp4v2-trunk-r355/src/mp4file.h 2010-05-23 15:44:57.568026299 -0700 -@@ -388,6 +388,10 @@ - uint16_t width, - uint16_t height); - -+ MP4TrackId AddSubpicTrack(uint32_t timescale, -+ uint16_t width, -+ uint16_t height); -+ - MP4TrackId AddPixelAspectRatio(MP4TrackId trackId, uint32_t hSpacing, uint32_t vSpacing); - MP4TrackId AddColr(MP4TrackId trackId, uint16_t pri, uint16_t tran, uint16_t mat); - diff --git a/pkgs/development/libraries/mp4v2/A01-divide-zero.patch b/pkgs/development/libraries/mp4v2/A01-divide-zero.patch deleted file mode 100644 index 4d6aa4d2a394..000000000000 --- a/pkgs/development/libraries/mp4v2/A01-divide-zero.patch +++ /dev/null @@ -1,22 +0,0 @@ ---- mp4v2-r355/src/mp4track.cpp 2012-01-05 15:44:29.000000000 +0100 -+++ mp4v2-r355/src/mp4track.cpp 2012-01-05 15:47:34.000000000 +0100 -@@ -819,13 +819,14 @@ - (thisSecStart + timeScale) - lastSampleTime; - // calculate the duration of the last sample - MP4Duration lastSampleDur = sampleTime - lastSampleTime; -- uint32_t overflow_bytes; - // now, calculate the number of bytes we overflowed. Round up. -- overflow_bytes = -- ((lastSampleSize * overflow_dur) + (lastSampleDur - 1)) / lastSampleDur; -+ if( lastSampleDur > 0 ) { -+ uint32_t overflow_bytes = 0; -+ overflow_bytes = ((lastSampleSize * overflow_dur) + (lastSampleDur - 1)) / lastSampleDur; - -- if (bytesThisSec - overflow_bytes > maxBytesPerSec) { -- maxBytesPerSec = bytesThisSec - overflow_bytes; -+ if (bytesThisSec - overflow_bytes > maxBytesPerSec) { -+ maxBytesPerSec = bytesThisSec - overflow_bytes; -+ } - } - - // now adjust the values for this sample. Remove the bytes diff --git a/pkgs/development/libraries/mp4v2/P00-mingw-dllimport.patch b/pkgs/development/libraries/mp4v2/P00-mingw-dllimport.patch deleted file mode 100644 index 5b7f1a300bd8..000000000000 --- a/pkgs/development/libraries/mp4v2/P00-mingw-dllimport.patch +++ /dev/null @@ -1,11 +0,0 @@ ---- mp4v2-trunk-r355/include/mp4v2/platform.h 2009-05-20 19:52:26.000000000 -0700 -+++ xxx/include/mp4v2/platform.h 2010-09-11 09:36:20.881523832 -0700 -@@ -24,7 +24,7 @@ - #if defined( _WIN32 ) || defined( __MINGW32__ ) - # if defined( _WINDLL ) || defined( DLL_EXPORT ) - # define MP4V2_EXPORT __declspec(dllexport) --# elif defined( _DLL ) || defined( DLL_IMPORT ) -+# elif defined( DLL_IMPORT ) - # define MP4V2_EXPORT __declspec(dllimport) - # else - # define MP4V2_EXPORT diff --git a/pkgs/development/libraries/mp4v2/default.nix b/pkgs/development/libraries/mp4v2/default.nix index 642f93872eba..48abf2b61513 100644 --- a/pkgs/development/libraries/mp4v2/default.nix +++ b/pkgs/development/libraries/mp4v2/default.nix @@ -1,18 +1,17 @@ { stdenv, fetchurl }: stdenv.mkDerivation rec { - name = "mp4v2-1.9.1p4"; + name = "mp4v2-2.0.0"; src = fetchurl { - url = "http://mp4v2.googlecode.com/files/${name}.tar.bz2"; - sha256 = "1d73qbi0faqad3bpmjfr4kk0mfmqpl1f43ysrx4gq9i3mfp1qf2w"; + url = "https://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/mp4v2/${name}.tar.bz2"; + sha256 = "0f438bimimsvxjbdp4vsr8hjw2nwggmhaxgcw07g2z361fkbj683"; }; # From Handbrake # mp4v2 doesn't seem to be actively maintained any more :-/ patches = [ - ./A00-nero-vobsub.patch ./A01-divide-zero.patch ./A02-meaningful-4gb-warning.patch - ./P00-mingw-dllimport.patch + ./A02-meaningful-4gb-warning.patch ]; # `faac' expects `mp4.h'. postInstall = "ln -s mp4v2/mp4v2.h $out/include/mp4.h"; diff --git a/pkgs/development/libraries/phonon/default.nix b/pkgs/development/libraries/phonon/default.nix index 4bbe05fea6ee..defeb8db490f 100644 --- a/pkgs/development/libraries/phonon/default.nix +++ b/pkgs/development/libraries/phonon/default.nix @@ -1,5 +1,5 @@ { stdenv, lib, fetchurl, cmake, mesa, pkgconfig, libpulseaudio -, qt4 ? null, extra-cmake-modules, qtbase ? null, qttools ? null +, qt4 ? null, extra-cmake-modules ? null, qtbase ? null, qttools ? null , withQt5 ? false , debug ? false }: @@ -32,7 +32,9 @@ stdenv.mkDerivation rec { [ mesa libpulseaudio ] ++ (if withQt5 then [ qtbase qttools ] else [ qt4 ]); - nativeBuildInputs = [ cmake pkgconfig ] ++ optional withQt5 extra-cmake-modules; + nativeBuildInputs = + [ cmake pkgconfig ] + ++ optional withQt5 extra-cmake-modules; NIX_CFLAGS_COMPILE = "-fPIC"; diff --git a/pkgs/development/libraries/protobuf/3.2.nix b/pkgs/development/libraries/protobuf/3.2.nix new file mode 100644 index 000000000000..338156bbdf98 --- /dev/null +++ b/pkgs/development/libraries/protobuf/3.2.nix @@ -0,0 +1,6 @@ +{ callPackage, lib, ... }: + +lib.overrideDerivation (callPackage ./generic-v3.nix { + version = "3.2.0"; + sha256 = "120g0bg7ichry74allgmqnh7k0z2sdnrrfklb58b7szzn4zcdz14"; +}) (attrs: { NIX_CFLAGS_COMPILE = "-Wno-error"; }) diff --git a/pkgs/development/libraries/qt-4.x/4.8/default.nix b/pkgs/development/libraries/qt-4.x/4.8/default.nix index 8c8e311a93ed..0860a90192f0 100644 --- a/pkgs/development/libraries/qt-4.x/4.8/default.nix +++ b/pkgs/development/libraries/qt-4.x/4.8/default.nix @@ -3,7 +3,7 @@ , libXfixes, libXrandr, libSM, freetype, fontconfig, zlib, libjpeg, libpng , libmng, which, mesaSupported, mesa, mesa_glu, openssl, dbus, cups, pkgconfig , libtiff, glib, icu, mysql, postgresql, sqlite, perl, coreutils, libXi -, buildMultimedia ? stdenv.isLinux, alsaLib, gstreamer, gst_plugins_base +, buildMultimedia ? stdenv.isLinux, alsaLib, gstreamer, gst-plugins-base , buildWebkit ? (stdenv.isLinux || stdenv.isDarwin) , flashplayerFix ? false, gdk_pixbuf , gtkStyle ? false, libgnomeui, gtk2, GConf, gnome_vfs @@ -138,7 +138,7 @@ stdenv.mkDerivation rec { # Qt doesn't directly need GLU (just GL), but many apps use, it's small and doesn't remain a runtime-dep if not used ++ optional mesaSupported mesa_glu ++ optional ((buildWebkit || buildMultimedia) && stdenv.isLinux ) alsaLib - ++ optionals (buildWebkit || buildMultimedia) [ gstreamer gst_plugins_base ]; + ++ optionals (buildWebkit || buildMultimedia) [ gstreamer gst-plugins-base ]; # The following libraries are only used in plugins buildInputs = diff --git a/pkgs/development/libraries/qt-5/5.5/default.nix b/pkgs/development/libraries/qt-5/5.5/default.nix index 6d27ed5a0d32..b7e8fb33387e 100644 --- a/pkgs/development/libraries/qt-5/5.5/default.nix +++ b/pkgs/development/libraries/qt-5/5.5/default.nix @@ -16,27 +16,30 @@ */ -{ pkgs - -# options -, developerBuild ? false -, decryptSslTraffic ? false +{ + newScope, + stdenv, fetchurl, makeSetupHook, makeWrapper, + bison, cups ? null, harfbuzz, mesa, perl, + libgnomeui, GConf, gnome_vfs, + gstreamer, gst-plugins-base, + + # options + developerBuild ? false, + decryptSslTraffic ? false, }: -let inherit (pkgs) makeSetupHook makeWrapper stdenv; in - with stdenv.lib; let mirror = "http://download.qt.io"; - srcs = import ./srcs.nix { inherit mirror; inherit (pkgs) fetchurl; }; + srcs = import ./srcs.nix { inherit mirror; inherit fetchurl; }; qtSubmodule = args: let inherit (args) name; inherit (srcs."${args.name}") version src; - inherit (pkgs.stdenv) mkDerivation; + inherit (stdenv) mkDerivation; in mkDerivation (args // { name = "${name}-${version}"; inherit src; @@ -62,12 +65,9 @@ let in { qtbase = callPackage ./qtbase { - mesa = pkgs.mesa_noglu; - harfbuzz = pkgs.harfbuzz-icu; - cups = if stdenv.isLinux then pkgs.cups else null; + inherit bison cups harfbuzz mesa; # GNOME dependencies are not used unless gtkStyle == true - inherit (pkgs.gnome2) libgnomeui GConf gnome_vfs; - bison = pkgs.bison2; # error: too few arguments to function 'int yylex(... + inherit libgnomeui GConf gnome_vfs; inherit developerBuild decryptSslTraffic; }; @@ -84,10 +84,11 @@ let qtlocation = callPackage ./qtlocation.nix {}; /* qtmacextras = not packaged */ qtmultimedia = callPackage ./qtmultimedia.nix { - inherit (pkgs.gst_all_1) gstreamer gst-plugins-base; + inherit gstreamer gst-plugins-base; }; qtquick1 = callPackage ./qtquick1 {}; qtquickcontrols = callPackage ./qtquickcontrols.nix {}; + qtquickcontrols2 = null; qtscript = callPackage ./qtscript {}; qtsensors = callPackage ./qtsensors.nix {}; qtserialport = callPackage ./qtserialport {}; @@ -124,6 +125,6 @@ let }; - self = makeScope pkgs.newScope addPackages; + self = makeScope newScope addPackages; in self diff --git a/pkgs/development/libraries/qt-5/5.6/default.nix b/pkgs/development/libraries/qt-5/5.6/default.nix index 687708d98efa..37b6eb7f3d3c 100644 --- a/pkgs/development/libraries/qt-5/5.6/default.nix +++ b/pkgs/development/libraries/qt-5/5.6/default.nix @@ -1,41 +1,52 @@ /* -# Updates +# New packages + +READ THIS FIRST + +This module is for official packages in Qt 5. All available packages are listed +in `./srcs.nix`, although a few are not yet packaged in Nixpkgs (see below). + +IF YOUR PACKAGE IS NOT LISTED IN `./srcs.nix`, IT DOES NOT GO HERE. -Before a major version update, make a copy of this directory. (We like to -keep the old version around for a short time after major updates.) Add a -top-level attribute to `top-level/all-packages.nix`. +Many of the packages released upstream are not yet built in Nixpkgs due to lack +of demand. To add a Nixpkgs build for an upstream package, copy one of the +existing packages here and modify it as necessary. -1. Update the URL in `maintainers/scripts/generate-qt.sh`. -2. From the top of the Nixpkgs tree, run - `./maintainers/scripts/generate-qt.sh > pkgs/development/libraries/qt-5/$VERSION/srcs.nix`. -3. Check that the new packages build correctly. +# Updates + +1. Update the URL in `./fetch.sh`. +2. Run `./maintainers/scripts/fetch-kde-qt.sh pkgs/development/libraries/qt-5/$VERSION/` + from the top of the Nixpkgs tree. +3. Use `nox-review wip` to check that everything builds. 4. Commit the changes and open a pull request. */ -{ pkgs +{ + newScope, + stdenv, fetchurl, makeSetupHook, makeWrapper, + bison, cups ? null, harfbuzz, mesa, perl, + gstreamer, gst-plugins-base, -# options -, developerBuild ? false -, decryptSslTraffic ? false + # options + developerBuild ? false, + decryptSslTraffic ? false, }: -let inherit (pkgs) makeSetupHook makeWrapper stdenv; in - with stdenv.lib; let mirror = "http://download.qt.io"; - srcs = import ./srcs.nix { inherit (pkgs) fetchurl; inherit mirror; }; + srcs = import ./srcs.nix { inherit fetchurl; inherit mirror; }; qtSubmodule = args: let inherit (args) name; version = args.version or srcs."${name}".version; src = args.src or srcs."${name}".src; - inherit (pkgs.stdenv) mkDerivation; + inherit (stdenv) mkDerivation; in mkDerivation (args // { name = "${name}-${version}"; inherit src; @@ -43,7 +54,7 @@ let propagatedBuildInputs = args.qtInputs ++ (args.propagatedBuildInputs or []); nativeBuildInputs = (args.nativeBuildInputs or []) - ++ [ pkgs.perl self.qmakeHook ]; + ++ [ perl self.qmakeHook ]; NIX_QT_SUBMODULE = args.NIX_QT_SUBMODULE or true; @@ -63,10 +74,7 @@ let in { qtbase = callPackage ./qtbase { - mesa = pkgs.mesa_noglu; - harfbuzz = pkgs.harfbuzz-icu; - cups = if stdenv.isLinux then pkgs.cups else null; - bison = pkgs.bison2; # error: too few arguments to function 'int yylex(... + inherit bison cups harfbuzz mesa; inherit developerBuild decryptSslTraffic; }; @@ -83,9 +91,11 @@ let qtlocation = callPackage ./qtlocation.nix {}; /* qtmacextras = not packaged */ qtmultimedia = callPackage ./qtmultimedia.nix { - inherit (pkgs.gst_all_1) gstreamer gst-plugins-base; + inherit gstreamer gst-plugins-base; }; + qtquick1 = null; qtquickcontrols = callPackage ./qtquickcontrols.nix {}; + qtquickcontrols2 = callPackage ./qtquickcontrols2.nix {}; qtscript = callPackage ./qtscript {}; qtsensors = callPackage ./qtsensors.nix {}; qtserialport = callPackage ./qtserialport {}; @@ -120,6 +130,6 @@ let (if stdenv.isDarwin then ../qmake-hook-darwin.sh else ../qmake-hook.sh); }; - self = makeScope pkgs.newScope addPackages; + self = makeScope newScope addPackages; in self diff --git a/pkgs/development/libraries/qt-5/5.6/qtquickcontrols2.nix b/pkgs/development/libraries/qt-5/5.6/qtquickcontrols2.nix new file mode 100644 index 000000000000..19750f2fd99d --- /dev/null +++ b/pkgs/development/libraries/qt-5/5.6/qtquickcontrols2.nix @@ -0,0 +1,6 @@ +{ qtSubmodule, qtdeclarative }: + +qtSubmodule { + name = "qtquickcontrols2"; + qtInputs = [ qtdeclarative ]; +} diff --git a/pkgs/development/libraries/qt-5/5.7/default.nix b/pkgs/development/libraries/qt-5/5.7/default.nix index d62bd3d1b51d..85b38c6fc6ce 100644 --- a/pkgs/development/libraries/qt-5/5.7/default.nix +++ b/pkgs/development/libraries/qt-5/5.7/default.nix @@ -14,28 +14,30 @@ top-level attribute to `top-level/all-packages.nix`. */ -{ pkgs - -# options -, developerBuild ? false -, decryptSslTraffic ? false +{ + newScope, + stdenv, fetchurl, makeSetupHook, makeWrapper, + bison, cups ? null, harfbuzz, mesa, perl, + gstreamer, gst-plugins-base, + + # options + developerBuild ? false, + decryptSslTraffic ? false, }: -let inherit (pkgs) makeSetupHook makeWrapper stdenv; in - with stdenv.lib; let mirror = "http://download.qt.io"; - srcs = import ./srcs.nix { inherit (pkgs) fetchurl; inherit mirror; }; + srcs = import ./srcs.nix { inherit fetchurl; inherit mirror; }; qtSubmodule = args: let inherit (args) name; version = args.version or srcs."${name}".version; src = args.src or srcs."${name}".src; - inherit (pkgs.stdenv) mkDerivation; + inherit (stdenv) mkDerivation; in mkDerivation (args // { name = "${name}-${version}"; inherit src; @@ -43,7 +45,7 @@ let propagatedBuildInputs = args.qtInputs ++ (args.propagatedBuildInputs or []); nativeBuildInputs = (args.nativeBuildInputs or []) - ++ [ pkgs.perl self.qmakeHook ]; + ++ [ perl self.qmakeHook ]; NIX_QT_SUBMODULE = args.NIX_QT_SUBMODULE or true; @@ -64,11 +66,7 @@ let qtbase = callPackage ./qtbase { inherit (srcs.qtbase) src version; - mesa = pkgs.mesa_noglu; - harfbuzz = pkgs.harfbuzz-icu; - cups = if stdenv.isLinux then pkgs.cups else null; - # GNOME dependencies are not used unless gtkStyle == true - bison = pkgs.bison2; # error: too few arguments to function 'int yylex(... + inherit bison cups harfbuzz mesa; inherit developerBuild decryptSslTraffic; }; @@ -79,8 +77,9 @@ let qtimageformats = callPackage ./qtimageformats.nix {}; qtlocation = callPackage ./qtlocation.nix {}; qtmultimedia = callPackage ./qtmultimedia.nix { - inherit (pkgs.gst_all_1) gstreamer gst-plugins-base; + inherit gstreamer gst-plugins-base; }; + qtquick1 = null; qtquickcontrols = callPackage ./qtquickcontrols.nix {}; qtquickcontrols2 = callPackage ./qtquickcontrols2.nix {}; qtscript = callPackage ./qtscript {}; @@ -117,6 +116,6 @@ let }; - self = makeScope pkgs.newScope addPackages; + self = makeScope newScope addPackages; in self diff --git a/pkgs/development/libraries/quazip/default.nix b/pkgs/development/libraries/quazip/default.nix index a1eb2ad7084c..7fbbf27c8eba 100644 --- a/pkgs/development/libraries/quazip/default.nix +++ b/pkgs/development/libraries/quazip/default.nix @@ -1,4 +1,4 @@ -{ fetchurl, stdenv, zip, zlib, qt, qmakeHook }: +{ fetchurl, stdenv, zip, zlib, qtbase, qmakeHook }: stdenv.mkDerivation rec { name = "quazip-0.7.1"; @@ -10,7 +10,7 @@ stdenv.mkDerivation rec { preConfigure = "cd quazip"; - buildInputs = [ zlib qt ]; + buildInputs = [ zlib qtbase ]; nativeBuildInputs = [ qmakeHook ]; meta = { diff --git a/pkgs/development/libraries/quickder/default.nix b/pkgs/development/libraries/quickder/default.nix index 2ee3a61aacfc..73bd9e863cde 100644 --- a/pkgs/development/libraries/quickder/default.nix +++ b/pkgs/development/libraries/quickder/default.nix @@ -3,10 +3,10 @@ stdenv.mkDerivation rec { pname = "quickder"; name = "${pname}-${version}"; - version = "1.0-RC1"; + version = "1.0-RC2"; src = fetchFromGitHub { - sha256 = "05gw5dqkw3l8kwwm0044zpxhcp7sxicx9wxbfyr49c91403p870w"; + sha256 = "1nzk8x6qzpvli8bf74dc2qya63nlppqjrnkaxvjxr2dbqb8qcrqd"; rev = "version-${version}"; owner = "vanrein"; repo = "quick-der"; diff --git a/pkgs/development/libraries/webkitgtk/2.4.nix b/pkgs/development/libraries/webkitgtk/2.4.nix index 1db47827abe5..33f8fa64a0f3 100644 --- a/pkgs/development/libraries/webkitgtk/2.4.nix +++ b/pkgs/development/libraries/webkitgtk/2.4.nix @@ -23,6 +23,13 @@ stdenv.mkDerivation rec { license = licenses.bsd2; platforms = with platforms; linux ++ darwin; maintainers = []; + knownVulnerabilities = [ + "WSA-2016-0004" + "WSA-2016-0005" + "WSA-2016-0006" + "WSA-2017-0001" + "WSA-2017-0002" + ]; }; src = fetchurl { diff --git a/pkgs/development/libraries/wlc/default.nix b/pkgs/development/libraries/wlc/default.nix index 144e9c091801..cd13fa8dbb4a 100644 --- a/pkgs/development/libraries/wlc/default.nix +++ b/pkgs/development/libraries/wlc/default.nix @@ -1,16 +1,17 @@ -{ lib, stdenv, fetchurl, fetchgit, cmake, pkgconfig, fetchFromGitHub +{ lib, stdenv, fetchgit, cmake, pkgconfig , glibc, wayland, pixman, libxkbcommon, libinput, libxcb, xcbutilwm, xcbutilimage, mesa, libdrm, udev, systemd, dbus_libs , libpthreadstubs, libX11, libXau, libXdmcp, libXext, libXdamage, libxshmfence, libXxf86vm +, wayland-protocols }: stdenv.mkDerivation rec { name = "wlc-${version}"; - version = "0.0.5"; + version = "0.0.8"; src = fetchgit { url = "https://github.com/Cloudef/wlc"; rev = "refs/tags/v${version}"; - sha256 = "0pg95n488fjlkc8n8x1h2dh4mxb7qln6mrq906lwwqv94aks9b43"; + sha256 = "1lkxbqnxfmbk9j9k8wq2fl5z0a9ihzalad3x1pp8w2riz41j3by6"; fetchSubmodules = true; }; @@ -18,7 +19,7 @@ stdenv.mkDerivation rec { buildInputs = [ wayland pixman libxkbcommon libinput libxcb xcbutilwm xcbutilimage mesa libdrm udev - libX11 libXdamage systemd dbus_libs + libX11 libXdamage systemd dbus_libs wayland-protocols ]; diff --git a/pkgs/development/libraries/wxGTK-2.8/default.nix b/pkgs/development/libraries/wxGTK-2.8/default.nix index 6b9aa4587350..cbfdf876dbaf 100644 --- a/pkgs/development/libraries/wxGTK-2.8/default.nix +++ b/pkgs/development/libraries/wxGTK-2.8/default.nix @@ -1,5 +1,5 @@ { stdenv, fetchurl, pkgconfig, gtk2, libXinerama, libSM, libXxf86vm, xf86vidmodeproto -, gstreamer, gst_plugins_base, GConf, libX11, cairo +, gstreamer, gst-plugins-base, GConf, libX11, cairo , withMesa ? true, mesa ? null, compat24 ? false, compat26 ? true, unicode ? true, }: @@ -16,7 +16,7 @@ stdenv.mkDerivation rec { sha256 = "1l1w4i113csv3bd5r8ybyj0qpxdq83lj6jrc5p7cc10mkwyiagqz"; }; - buildInputs = [ gtk2 libXinerama libSM libXxf86vm xf86vidmodeproto gstreamer gst_plugins_base GConf libX11 cairo ] + buildInputs = [ gtk2 libXinerama libSM libXxf86vm xf86vidmodeproto gstreamer gst-plugins-base GConf libX11 cairo ] ++ optional withMesa mesa; nativeBuildInputs = [ pkgconfig ]; diff --git a/pkgs/development/libraries/wxGTK-2.9/default.nix b/pkgs/development/libraries/wxGTK-2.9/default.nix index b2f40978f51b..e19f0bc3a765 100644 --- a/pkgs/development/libraries/wxGTK-2.9/default.nix +++ b/pkgs/development/libraries/wxGTK-2.9/default.nix @@ -1,5 +1,5 @@ { stdenv, fetchurl, pkgconfig, gtk2, libXinerama, libSM, libXxf86vm, xf86vidmodeproto -, gstreamer, gst_plugins_base, GConf, setfile +, gstreamer, gst-plugins-base, GConf, setfile , withMesa ? true, mesa ? null, compat24 ? false, compat26 ? true, unicode ? true , Carbon ? null, Cocoa ? null, Kernel ? null, QuickTime ? null, AGL ? null }: @@ -21,7 +21,7 @@ stdenv.mkDerivation { buildInputs = [ gtk2 libXinerama libSM libXxf86vm xf86vidmodeproto gstreamer - gst_plugins_base GConf ] + gst-plugins-base GConf ] ++ optional withMesa mesa ++ optionals stdenv.isDarwin [ setfile Carbon Cocoa Kernel QuickTime ]; diff --git a/pkgs/development/libraries/wxGTK-3.0/default.nix b/pkgs/development/libraries/wxGTK-3.0/default.nix index ed9372725146..f40595d4eacb 100644 --- a/pkgs/development/libraries/wxGTK-3.0/default.nix +++ b/pkgs/development/libraries/wxGTK-3.0/default.nix @@ -1,5 +1,5 @@ { stdenv, fetchurl, fetchpatch, pkgconfig, gtk2, libXinerama, libSM, libXxf86vm -, xf86vidmodeproto , gstreamer, gst_plugins_base, GConf, setfile +, xf86vidmodeproto , gstreamer, gst-plugins-base, GConf, setfile , withMesa ? true, mesa ? null, compat24 ? false, compat26 ? true, unicode ? true , withWebKit ? false, webkitgtk2 ? null , AGL ? null, Carbon ? null, Cocoa ? null, Kernel ? null, QTKit ? null @@ -24,7 +24,7 @@ stdenv.mkDerivation { buildInputs = [ gtk2 libXinerama libSM libXxf86vm xf86vidmodeproto gstreamer - gst_plugins_base GConf ] + gst-plugins-base GConf ] ++ optional withMesa mesa ++ optional withWebKit webkitgtk2 ++ optionals stdenv.isDarwin [ setfile Carbon Cocoa Kernel QTKit ]; diff --git a/pkgs/development/ocaml-modules/conduit/default.nix b/pkgs/development/ocaml-modules/conduit/default.nix index 22c74d7f92e5..d1da95ffaa1c 100644 --- a/pkgs/development/ocaml-modules/conduit/default.nix +++ b/pkgs/development/ocaml-modules/conduit/default.nix @@ -1,4 +1,4 @@ -{ stdenv, buildOcaml, fetchurl, ocaml, sexplib_p4, stringext, uri_p4, cstruct, ipaddr +{ stdenv, buildOcaml, fetchurl, ocaml, sexplib_p4, stringext, uri_p4, cstruct, ipaddr_p4 , asyncSupport ? stdenv.lib.versionAtLeast ocaml.version "4.02" , async_p4 ? null, async_ssl_p4 ? null, lwt ? null }: @@ -12,7 +12,7 @@ buildOcaml rec { sha256 = "5cf1a46aa0254345e5143feebe6b54bdef96314e9987f44e69f24618d620faa1"; }; - propagatedBuildInputs = [ sexplib_p4 stringext uri_p4 cstruct ipaddr ]; + propagatedBuildInputs = [ sexplib_p4 stringext uri_p4 cstruct ipaddr_p4 ]; buildInputs = stdenv.lib.optional (lwt != null) lwt ++ stdenv.lib.optional (asyncSupport && async_p4 != null) async_p4 ++ stdenv.lib.optional (asyncSupport && async_ssl_p4 != null) async_ssl_p4; diff --git a/pkgs/development/ocaml-modules/eliom/default.nix b/pkgs/development/ocaml-modules/eliom/default.nix index f3c9f4cecefe..d7b0bbd3d48c 100644 --- a/pkgs/development/ocaml-modules/eliom/default.nix +++ b/pkgs/development/ocaml-modules/eliom/default.nix @@ -2,6 +2,7 @@ js_of_ocaml, ocaml_react, ocaml_lwt, calendar, cryptokit, tyxml, ipaddr, ocamlnet, ocaml_ssl, ocaml_pcre, ocaml_optcomp, reactivedata, opam, ppx_tools, ppx_deriving, findlib +, ocamlbuild }: assert stdenv.lib.versionAtLeast ocaml.version "4.02"; @@ -19,7 +20,7 @@ stdenv.mkDerivation rec patches = [ ./camlp4.patch ]; - buildInputs = [ ocaml which findlib ocaml_optcomp opam ppx_tools ]; + buildInputs = [ ocaml which findlib ocamlbuild ocaml_optcomp opam ppx_tools ]; propagatedBuildInputs = [ ocaml_lwt reactivedata tyxml ipaddr ocsigen_server ppx_deriving ocsigen_deriving js_of_ocaml diff --git a/pkgs/development/ocaml-modules/ipaddr/2.6.1.nix b/pkgs/development/ocaml-modules/ipaddr/2.6.1.nix new file mode 100644 index 000000000000..cdc273d6ecfd --- /dev/null +++ b/pkgs/development/ocaml-modules/ipaddr/2.6.1.nix @@ -0,0 +1,32 @@ +{stdenv, buildOcaml, fetchurl, sexplib_p4}: + +buildOcaml rec { + name = "ipaddr"; + version = "2.6.1"; + + src = fetchurl { + url = "https://github.com/mirage/ocaml-ipaddr/archive/${version}.tar.gz"; + sha256 = "7051013d8f58abff433187d70cd7ddd7a6b49a6fbe6cad1893f571f65b8ed3d0"; + }; + + propagatedBuildInputs = [ sexplib_p4 ]; + + configurePhase = '' + ocaml setup.ml -configure --prefix $out + ''; + + buildPhase = '' + make build + ''; + + installPhase = '' + make install + ''; + + meta = with stdenv.lib; { + homepage = https://github.com/mirage/ocaml-ipaddr; + description = "A library for manipulation of IP (and MAC) address representations "; + license = licenses.mit; + maintainers = [ maintainers.ericbmerritt ]; + }; +} diff --git a/pkgs/development/ocaml-modules/ipaddr/default.nix b/pkgs/development/ocaml-modules/ipaddr/default.nix index cdc273d6ecfd..0b561ab6d695 100644 --- a/pkgs/development/ocaml-modules/ipaddr/default.nix +++ b/pkgs/development/ocaml-modules/ipaddr/default.nix @@ -1,27 +1,19 @@ -{stdenv, buildOcaml, fetchurl, sexplib_p4}: +{ stdenv, buildOcaml, fetchurl, ocamlbuild, findlib +, topkg, sexplib, ppx_sexp_conv, opam }: buildOcaml rec { name = "ipaddr"; - version = "2.6.1"; + version = "2.7.2"; src = fetchurl { url = "https://github.com/mirage/ocaml-ipaddr/archive/${version}.tar.gz"; - sha256 = "7051013d8f58abff433187d70cd7ddd7a6b49a6fbe6cad1893f571f65b8ed3d0"; + sha256 = "0mnjw1xjr8vyn5x1nnbbxfxhs77znwrkz8c144w47zk2pc3xrh9d"; }; - propagatedBuildInputs = [ sexplib_p4 ]; + buildInputs = [ findlib ocamlbuild topkg ppx_sexp_conv opam ]; + propagatedBuildInputs = [ sexplib ]; - configurePhase = '' - ocaml setup.ml -configure --prefix $out - ''; - - buildPhase = '' - make build - ''; - - installPhase = '' - make install - ''; + inherit (topkg) buildPhase installPhase; meta = with stdenv.lib; { homepage = https://github.com/mirage/ocaml-ipaddr; diff --git a/pkgs/development/ocaml-modules/janestreet/core-113_33_02.nix b/pkgs/development/ocaml-modules/janestreet/core-113_33_02.nix new file mode 100644 index 000000000000..48bafd5c3c5a --- /dev/null +++ b/pkgs/development/ocaml-modules/janestreet/core-113_33_02.nix @@ -0,0 +1,21 @@ +{ stdenv, fetchurl, ocaml, findlib, ocamlbuild, opam, topkg +, ppx_jane, core_kernel +}: + +stdenv.mkDerivation { + name = "ocaml${ocaml.version}-core-113.33.02+4.03"; + src = fetchurl { + url = http://ocaml.janestreet.com/ocaml-core/113.33/files/core-113.33.02+4.03.tar.gz; + sha256 = "1gvd5saa0sdgyv9w09imqlkw0c21v2ixic8fxx14jxrwck0zn4bc"; + }; + + buildInputs = [ ocaml findlib ocamlbuild opam ppx_jane ]; + propagatedBuildInputs = [ core_kernel ]; + + inherit (topkg) installPhase; + + meta = { + license = stdenv.lib.licenses.asl20; + inherit (ocaml.meta) platforms; + }; +} diff --git a/pkgs/development/ocaml-modules/janestreet/core_kernel-113_33_01.nix b/pkgs/development/ocaml-modules/janestreet/core_kernel-113_33_01.nix new file mode 100644 index 000000000000..d6da9caed7d7 --- /dev/null +++ b/pkgs/development/ocaml-modules/janestreet/core_kernel-113_33_01.nix @@ -0,0 +1,25 @@ +{ stdenv, fetchurl, ocaml, findlib, ocamlbuild, opam, topkg, ppx_jane +, bin_prot, fieldslib, typerep, variantslib +, ppx_assert, ppx_bench, ppx_expect, ppx_inline_test +}: + +stdenv.mkDerivation { + name = "ocaml${ocaml.version}-core_kernel-113.33.01+4.03"; + src = fetchurl { + url = http://ocaml.janestreet.com/ocaml-core/113.33/files/core_kernel-113.33.01+4.03.tar.gz; + sha256 = "0ra2frspqjqk1wbb58lrb0anrgsyhja00zsybka85qy71lblamfs"; + }; + + buildInputs = [ ocaml findlib ocamlbuild opam ppx_jane ]; + propagatedBuildInputs = [ + bin_prot fieldslib typerep variantslib + ppx_assert ppx_bench ppx_expect ppx_inline_test + ]; + + inherit (topkg) installPhase; + + meta = { + license = stdenv.lib.licenses.asl20; + inherit (ocaml.meta) platforms; + }; +} diff --git a/pkgs/development/ocaml-modules/janestreet/ppx_bench-113_33_00.nix b/pkgs/development/ocaml-modules/janestreet/ppx_bench-113_33_00.nix new file mode 100644 index 000000000000..3414324a5c81 --- /dev/null +++ b/pkgs/development/ocaml-modules/janestreet/ppx_bench-113_33_00.nix @@ -0,0 +1,21 @@ +{ stdenv, fetchurl, ocaml, findlib, ocamlbuild, opam, topkg +, ppx_tools, ppx_inline_test +}: + +stdenv.mkDerivation { + name = "ocaml${ocaml.version}-ppx_bench-113.33.00+4.03"; + src = fetchurl { + url = http://ocaml.janestreet.com/ocaml-core/113.33/files/ppx_bench-113.33.00+4.03.tar.gz; + sha256 = "00iv0p3cni4r7iimwm04bjg2hzvlvdb0b1kynjw2xav64xc29q01"; + }; + + buildInputs = [ ocaml findlib ocamlbuild opam ppx_tools ]; + propagatedBuildInputs = [ ppx_inline_test ]; + + inherit (topkg) installPhase; + + meta = { + license = stdenv.lib.licenses.asl20; + inherit (ocaml.meta) platforms; + }; +} diff --git a/pkgs/development/ocaml-modules/janestreet/ppx_bin_prot-113_33_00.nix b/pkgs/development/ocaml-modules/janestreet/ppx_bin_prot-113_33_00.nix new file mode 100644 index 000000000000..43517a82d3b2 --- /dev/null +++ b/pkgs/development/ocaml-modules/janestreet/ppx_bin_prot-113_33_00.nix @@ -0,0 +1,21 @@ +{ stdenv, fetchurl, ocaml, findlib, ocamlbuild, opam, topkg +, bin_prot, ppx_deriving, ppx_tools, ppx_type_conv +}: + +stdenv.mkDerivation { + name = "ocaml${ocaml.version}-ppx_bin_prot-113.33.00+4.03"; + src = fetchurl { + url = http://ocaml.janestreet.com/ocaml-core/113.33/files/ppx_bin_prot-113.33.00+4.03.tar.gz; + sha256 = "1xw1yjgnd5ny1cq0n6rbsdaywyzq2n0jwg4gjsxv14dhv0alav36"; + }; + + buildInputs = [ ocaml findlib ocamlbuild opam ppx_tools ]; + propagatedBuildInputs = [ bin_prot ppx_deriving ppx_type_conv ]; + + inherit (topkg) installPhase; + + meta = { + license = stdenv.lib.licenses.asl20; + inherit (ocaml.meta) platforms; + }; +} diff --git a/pkgs/development/ocaml-modules/janestreet/ppx_compare-113_33_00.nix b/pkgs/development/ocaml-modules/janestreet/ppx_compare-113_33_00.nix new file mode 100644 index 000000000000..794570402025 --- /dev/null +++ b/pkgs/development/ocaml-modules/janestreet/ppx_compare-113_33_00.nix @@ -0,0 +1,21 @@ +{ stdenv, fetchurl, ocaml, findlib, ocamlbuild, opam, topkg +, ppx_tools, ppx_deriving, ppx_type_conv +}: + +stdenv.mkDerivation { + name = "ocaml${ocaml.version}-ppx_compare-113.33.00+4.03"; + src = fetchurl { + url = http://ocaml.janestreet.com/ocaml-core/113.33/files/ppx_compare-113.33.00+4.03.tar.gz; + sha256 = "07drgg6c857lsvxdjscdcb1ncdr5p3183spw32sbfcrbnr12nzys"; + }; + + buildInputs = [ ocaml findlib ocamlbuild opam ppx_tools ]; + propagatedBuildInputs = [ ppx_type_conv ppx_deriving ]; + + inherit (topkg) installPhase; + + meta = { + license = stdenv.lib.licenses.asl20; + inherit (ocaml.meta) platforms; + }; +} diff --git a/pkgs/development/ocaml-modules/janestreet/ppx_core-113_33_01.nix b/pkgs/development/ocaml-modules/janestreet/ppx_core-113_33_01.nix new file mode 100644 index 000000000000..71bc62937d4d --- /dev/null +++ b/pkgs/development/ocaml-modules/janestreet/ppx_core-113_33_01.nix @@ -0,0 +1,20 @@ +{ stdenv, fetchurl, ocaml, findlib, ocamlbuild, opam, topkg +, ppx_tools +}: + +stdenv.mkDerivation { + name = "ocaml${ocaml.version}-ppx_core-133.33.01+4.03"; + src = fetchurl { + url = http://ocaml.janestreet.com/ocaml-core/113.33/files/ppx_core-113.33.01+4.03.tar.gz; + sha256 = "0ibww4lx87lmn164mxczl3sa7ldwc7g1zi4m9c4vllsv004iyffl"; + }; + + buildInputs = [ ocaml findlib ocamlbuild opam ppx_tools ]; + + inherit (topkg) installPhase; + + meta = { + license = stdenv.lib.licenses.asl20; + inherit (ocaml.meta) platforms; + }; +} diff --git a/pkgs/development/ocaml-modules/janestreet/ppx_custom_printf-113_33_00.nix b/pkgs/development/ocaml-modules/janestreet/ppx_custom_printf-113_33_00.nix new file mode 100644 index 000000000000..d75c7f811286 --- /dev/null +++ b/pkgs/development/ocaml-modules/janestreet/ppx_custom_printf-113_33_00.nix @@ -0,0 +1,21 @@ +{ stdenv, fetchurl, ocaml, findlib, ocamlbuild, opam, topkg +, ppx_sexp_conv +}: + +stdenv.mkDerivation { + name = "ocaml${ocaml.version}-ppx_custom_printf-113.33.00+4.03"; + src = fetchurl { + url = http://ocaml.janestreet.com/ocaml-core/113.33/files/ppx_custom_printf-113.33.00+4.03.tar.gz; + sha256 = "1hw8q4x0hzyg3brlqpdm0bc7z6lnj6qymzw123cf51q9dq0386jb"; + }; + + buildInputs = [ ocaml findlib ocamlbuild opam ]; + propagatedBuildInputs = [ ppx_sexp_conv ]; + + inherit (topkg) installPhase; + + meta = { + license = stdenv.lib.licenses.asl20; + inherit (ocaml.meta) platforms; + }; +} diff --git a/pkgs/development/ocaml-modules/janestreet/ppx_enumerate-113_33_00.nix b/pkgs/development/ocaml-modules/janestreet/ppx_enumerate-113_33_00.nix new file mode 100644 index 000000000000..77fde21e8d79 --- /dev/null +++ b/pkgs/development/ocaml-modules/janestreet/ppx_enumerate-113_33_00.nix @@ -0,0 +1,21 @@ +{ stdenv, fetchurl, ocaml, findlib, ocamlbuild, opam, topkg +, ppx_tools, ppx_deriving, ppx_type_conv +}: + +stdenv.mkDerivation { + name = "ocaml${ocaml.version}-ppx_enumerate-113.33.00+4.03"; + src = fetchurl { + url = http://ocaml.janestreet.com/ocaml-core/113.33/files/ppx_enumerate-113.33.00+4.03.tar.gz; + sha256 = "0b0kvdw6kids4yrzqq2h82gmnx1zfiahr82rrdbwiwkk4g0pxl93"; + }; + + buildInputs = [ ocaml findlib ocamlbuild opam ppx_tools ]; + propagatedBuildInputs = [ ppx_deriving ppx_type_conv ]; + + inherit (topkg) installPhase; + + meta = { + license = stdenv.lib.licenses.asl20; + inherit (ocaml.meta) platforms; + }; +} diff --git a/pkgs/development/ocaml-modules/janestreet/ppx_expect-113_33_01.nix b/pkgs/development/ocaml-modules/janestreet/ppx_expect-113_33_01.nix new file mode 100644 index 000000000000..32133dfb6894 --- /dev/null +++ b/pkgs/development/ocaml-modules/janestreet/ppx_expect-113_33_01.nix @@ -0,0 +1,22 @@ +{ stdenv, fetchurl, ocaml, findlib, ocamlbuild, opam, topkg +, ppx_driver, ppx_assert, ppx_custom_printf, ppx_inline_test +, ppx_fields_conv, ppx_variants_conv, re, sexplib, fieldslib +}: + +stdenv.mkDerivation { + name = "ocaml${ocaml.version}-ppx_expect-113.33.01+4.03"; + src = fetchurl { + url = http://ocaml.janestreet.com/ocaml-core/113.33/files/ppx_expect-113.33.01+4.03.tar.gz; + sha256 = "1r358vx3wnkzq8kwgi49400l1fx2bnl6gds4hl7s67lxsqxki2z7"; + }; + + buildInputs = [ ocaml findlib ocamlbuild opam ppx_assert ppx_custom_printf ppx_fields_conv ppx_variants_conv re ]; + propagatedBuildInputs = [ ppx_driver ppx_inline_test fieldslib sexplib ]; + + inherit (topkg) installPhase; + + meta = { + license = stdenv.lib.licenses.asl20; + inherit (ocaml.meta) platforms; + }; +} diff --git a/pkgs/development/ocaml-modules/janestreet/ppx_fail-113_33_00.nix b/pkgs/development/ocaml-modules/janestreet/ppx_fail-113_33_00.nix new file mode 100644 index 000000000000..ba098b9294f6 --- /dev/null +++ b/pkgs/development/ocaml-modules/janestreet/ppx_fail-113_33_00.nix @@ -0,0 +1,21 @@ +{ stdenv, fetchurl, ocaml, findlib, ocamlbuild, opam, topkg +, ppx_tools, ppx_here +}: + +stdenv.mkDerivation { + name = "ocaml${ocaml.version}-ppx_fail-113.33.00+4.03"; + src = fetchurl { + url = http://ocaml.janestreet.com/ocaml-core/113.33/files/ppx_fail-113.33.00+4.03.tar.gz; + sha256 = "1fy1aqsylf6yk527w13rm2b20il9vy026c5ww65pj3ks5zykfvx9"; + }; + + buildInputs = [ ocaml findlib ocamlbuild opam ppx_tools ]; + propagatedBuildInputs = [ ppx_here ]; + + inherit (topkg) installPhase; + + meta = { + license = stdenv.lib.licenses.asl20; + inherit (ocaml.meta) platforms; + }; +} diff --git a/pkgs/development/ocaml-modules/janestreet/ppx_fields_conv-113_33_00.nix b/pkgs/development/ocaml-modules/janestreet/ppx_fields_conv-113_33_00.nix new file mode 100644 index 000000000000..70d6ec61b0ea --- /dev/null +++ b/pkgs/development/ocaml-modules/janestreet/ppx_fields_conv-113_33_00.nix @@ -0,0 +1,21 @@ +{ stdenv, fetchurl, ocaml, findlib, ocamlbuild, opam, topkg +, fieldslib, ppx_deriving, ppx_type_conv +}: + +stdenv.mkDerivation { + name = "ocaml${ocaml.version}-ppx_fields_conv-113.33.00+4.03"; + src = fetchurl { + url = http://ocaml.janestreet.com/ocaml-core/113.33/files/ppx_fields_conv-113.33.00+4.03.tar.gz; + sha256 = "1wfi8pc0y7wjiscvawhfgbcfx7ypmikmyyagwhzw7jhnldljwrkg"; + }; + + buildInputs = [ ocaml findlib ocamlbuild opam ]; + propagatedBuildInputs = [ fieldslib ppx_deriving ppx_type_conv ]; + + inherit (topkg) installPhase; + + meta = { + license = stdenv.lib.licenses.asl20; + inherit (ocaml.meta) platforms; + }; +} diff --git a/pkgs/development/ocaml-modules/janestreet/ppx_inline_test-113_33_00.nix b/pkgs/development/ocaml-modules/janestreet/ppx_inline_test-113_33_00.nix new file mode 100644 index 000000000000..7b9414353a9e --- /dev/null +++ b/pkgs/development/ocaml-modules/janestreet/ppx_inline_test-113_33_00.nix @@ -0,0 +1,21 @@ +{ stdenv, fetchurl, ocaml, findlib, ocamlbuild, opam, topkg +, ppx_tools, ppx_driver +}: + +stdenv.mkDerivation { + name = "ocaml${ocaml.version}-ppx_inline_test-113.33.00+4.03"; + src = fetchurl { + url = http://ocaml.janestreet.com/ocaml-core/113.33/files/ppx_inline_test-113.33.00+4.03.tar.gz; + sha256 = "1sw71wnwznia1spicilj4bzspgdk1dhp0j4hp57a9xmsscg44i4k"; + }; + + buildInputs = [ ocaml findlib ocamlbuild opam ppx_tools ]; + propagatedBuildInputs = [ ppx_driver ]; + + inherit (topkg) installPhase; + + meta = { + license = stdenv.lib.licenses.asl20; + inherit (ocaml.meta) platforms; + }; +} diff --git a/pkgs/development/ocaml-modules/janestreet/ppx_jane-113_33_00.nix b/pkgs/development/ocaml-modules/janestreet/ppx_jane-113_33_00.nix new file mode 100644 index 000000000000..0a5b19051fc2 --- /dev/null +++ b/pkgs/development/ocaml-modules/janestreet/ppx_jane-113_33_00.nix @@ -0,0 +1,24 @@ +{ stdenv, fetchurl, ocaml, findlib, ocamlbuild, opam, topkg +, ppx_assert, ppx_bench, ppx_bin_prot, ppx_custom_printf, ppx_enumerate, ppx_expect, ppx_fail, ppx_fields_conv, ppx_let, ppx_pipebang, ppx_sexp_message, ppx_sexp_value, ppx_typerep_conv, ppx_variants_conv +}: + +stdenv.mkDerivation { + name = "ocaml${ocaml.version}-ppx_jane-113.33.00"; + src = fetchurl { + url = http://ocaml.janestreet.com/ocaml-core/113.33/files/ppx_jane-113.33.00.tar.gz; + sha256 = "15lbrc9jj83k208gv7knz7mk9xh9mdb657jdjb1006gdsskfmra6"; + }; + + buildInputs = [ ocaml findlib ocamlbuild opam ]; + propagatedBuildInputs = [ ppx_assert ppx_bench ppx_bin_prot + ppx_custom_printf ppx_enumerate ppx_expect ppx_fail ppx_fields_conv + ppx_let ppx_pipebang ppx_sexp_message ppx_sexp_value ppx_typerep_conv + ppx_variants_conv ]; + + inherit (topkg) installPhase; + + meta = { + license = stdenv.lib.licenses.asl20; + inherit (ocaml.meta) platforms; + }; +} diff --git a/pkgs/development/ocaml-modules/janestreet/ppx_let-113_33_00.nix b/pkgs/development/ocaml-modules/janestreet/ppx_let-113_33_00.nix new file mode 100644 index 000000000000..b5f0bd4c9324 --- /dev/null +++ b/pkgs/development/ocaml-modules/janestreet/ppx_let-113_33_00.nix @@ -0,0 +1,21 @@ +{ stdenv, fetchurl, ocaml, findlib, ocamlbuild, opam, topkg +, ppx_driver +}: + +stdenv.mkDerivation { + name = "ocaml${ocaml.version}-ppx_let-113.33.00+4.03"; + src = fetchurl { + url = http://ocaml.janestreet.com/ocaml-core/113.33/files/ppx_let-113.33.00+4.03.tar.gz; + sha256 = "012yzayknm9qv8ap9rbwf4fwnmx935mfy7c75ifagbnfl4lh7dmp"; + }; + + buildInputs = [ ocaml findlib ocamlbuild opam ]; + propagatedBuildInputs = [ ppx_driver ]; + + inherit (topkg) installPhase; + + meta = { + license = stdenv.lib.licenses.asl20; + inherit (ocaml.meta) platforms; + }; +} diff --git a/pkgs/development/ocaml-modules/janestreet/ppx_optcomp-113_33_01.nix b/pkgs/development/ocaml-modules/janestreet/ppx_optcomp-113_33_01.nix new file mode 100644 index 000000000000..05e7f40eb686 --- /dev/null +++ b/pkgs/development/ocaml-modules/janestreet/ppx_optcomp-113_33_01.nix @@ -0,0 +1,34 @@ +{ stdenv, fetchzip, ocaml, findlib, ocamlbuild, opam, topkg, oasis +, ppx_core, ppx_tools +}: + +let + param = { + "4.03" = { + version = "113.33.00+4.03"; + sha256 = "1fkz6n40l4ck8bcr548d2yp08zc9fjv42zldlh0cj3ammhiz3gap"; + }; + "4.04" = { + version = "113.33.01+4.03"; + sha256 = "1caw5dfgh5rw8mcgar0hdn485j1rqlnkbfb8wd0wdl5zhkg8jk3d"; + }; + }."${ocaml.meta.branch}"; +in + +stdenv.mkDerivation { + name = "ocaml${ocaml.version}-ppx_optcomp-${param.version}"; + src = fetchzip { + url = "http://github.com/janestreet/ppx_optcomp/archive/${param.version}.tar.gz"; + inherit (param) sha256; + }; + + buildInputs = [ ocaml findlib ocamlbuild opam oasis ppx_tools ]; + propagatedBuildInputs = [ ppx_core ]; + + inherit (topkg) installPhase; + + meta = { + license = stdenv.lib.licenses.asl20; + inherit (ocaml.meta) platforms; + }; +} diff --git a/pkgs/development/ocaml-modules/janestreet/ppx_pipebang-113_33_00.nix b/pkgs/development/ocaml-modules/janestreet/ppx_pipebang-113_33_00.nix new file mode 100644 index 000000000000..5aa589e250c1 --- /dev/null +++ b/pkgs/development/ocaml-modules/janestreet/ppx_pipebang-113_33_00.nix @@ -0,0 +1,21 @@ +{ stdenv, fetchurl, ocaml, findlib, ocamlbuild, opam, topkg +, ppx_tools, ppx_driver +}: + +stdenv.mkDerivation { + name = "ocaml${ocaml.version}-ppx_pipebang-113.33.00+4.03"; + src = fetchurl { + url = http://ocaml.janestreet.com/ocaml-core/113.33/files/ppx_pipebang-113.33.00+4.03.tar.gz; + sha256 = "1rjrpbncy8vzwnmc5n0qs4dd40dmg4h75dvd7h7lm8cpxalifivc"; + }; + + buildInputs = [ ocaml findlib ocamlbuild opam ppx_tools ]; + propagatedBuildInputs = [ ppx_driver ]; + + inherit (topkg) installPhase; + + meta = { + license = stdenv.lib.licenses.asl20; + inherit (ocaml.meta) platforms; + }; +} diff --git a/pkgs/development/ocaml-modules/janestreet/ppx_sexp_conv-113_33_01.nix b/pkgs/development/ocaml-modules/janestreet/ppx_sexp_conv-113_33_01.nix new file mode 100644 index 000000000000..d8c9166585e1 --- /dev/null +++ b/pkgs/development/ocaml-modules/janestreet/ppx_sexp_conv-113_33_01.nix @@ -0,0 +1,21 @@ +{ stdenv, fetchurl, ocaml, findlib, ocamlbuild, opam, topkg +, sexplib, ppx_deriving, ppx_tools, ppx_type_conv +}: + +stdenv.mkDerivation { + name = "ocaml${ocaml.version}-ppx_sexp_conv-133.33.01+4.03"; + src = fetchurl { + url = http://ocaml.janestreet.com/ocaml-core/113.33/files/ppx_sexp_conv-113.33.01+4.03.tar.gz; + sha256 = "176pydk5fs8m2md9v8v5b16gra90s4v0ssqq38ghfsbv1faca8d6"; + }; + + buildInputs = [ ocaml findlib ocamlbuild opam ppx_tools ]; + propagatedBuildInputs = [ sexplib ppx_deriving ppx_type_conv ]; + + inherit (topkg) installPhase; + + meta = { + license = stdenv.lib.licenses.asl20; + inherit (ocaml.meta) platforms; + }; +} diff --git a/pkgs/development/ocaml-modules/janestreet/ppx_sexp_message-113_33_00.nix b/pkgs/development/ocaml-modules/janestreet/ppx_sexp_message-113_33_00.nix new file mode 100644 index 000000000000..ddf66364b305 --- /dev/null +++ b/pkgs/development/ocaml-modules/janestreet/ppx_sexp_message-113_33_00.nix @@ -0,0 +1,21 @@ +{ stdenv, fetchurl, ocaml, findlib, ocamlbuild, opam, topkg +, ppx_sexp_conv, ppx_here +}: + +stdenv.mkDerivation { + name = "ocaml${ocaml.version}-ppx_sexp_message-113.33.00+4.03"; + src = fetchurl { + url = http://ocaml.janestreet.com/ocaml-core/113.33/files/ppx_sexp_message-113.33.00+4.03.tar.gz; + sha256 = "01vrm8dk413gh19i2y6ffpsmscjhayp3asn5hcbcflxsvlaf4klx"; + }; + + buildInputs = [ ocaml findlib ocamlbuild opam ]; + propagatedBuildInputs = [ ppx_here ppx_sexp_conv ]; + + inherit (topkg) installPhase; + + meta = { + license = stdenv.lib.licenses.asl20; + inherit (ocaml.meta) platforms; + }; +} diff --git a/pkgs/development/ocaml-modules/janestreet/ppx_sexp_value-113_33_00.nix b/pkgs/development/ocaml-modules/janestreet/ppx_sexp_value-113_33_00.nix new file mode 100644 index 000000000000..21b67b9cce73 --- /dev/null +++ b/pkgs/development/ocaml-modules/janestreet/ppx_sexp_value-113_33_00.nix @@ -0,0 +1,21 @@ +{ stdenv, fetchurl, ocaml, findlib, ocamlbuild, opam, topkg +, ppx_here, ppx_sexp_conv +}: + +stdenv.mkDerivation { + name = "ocaml${ocaml.version}-ppx_sexp_value-113.33.00+4.03"; + src = fetchurl { + url = http://ocaml.janestreet.com/ocaml-core/113.33/files/ppx_sexp_value-113.33.00+4.03.tar.gz; + sha256 = "0pn2v1m479lbdgprv4w9czyv5nim0hz6ailmy1xxlxlhazwbqzwm"; + }; + + buildInputs = [ ocaml findlib ocamlbuild opam ]; + propagatedBuildInputs = [ ppx_sexp_conv ppx_here ]; + + inherit (topkg) installPhase; + + meta = { + license = stdenv.lib.licenses.asl20; + inherit (ocaml.meta) platforms; + }; +} diff --git a/pkgs/development/ocaml-modules/janestreet/ppx_type_conv-113_33_02.nix b/pkgs/development/ocaml-modules/janestreet/ppx_type_conv-113_33_02.nix new file mode 100644 index 000000000000..49cfc19321d6 --- /dev/null +++ b/pkgs/development/ocaml-modules/janestreet/ppx_type_conv-113_33_02.nix @@ -0,0 +1,21 @@ +{ stdenv, fetchurl, ocaml, findlib, ocamlbuild, opam, topkg +, ppx_core, ppx_deriving, ppx_driver +}: + +stdenv.mkDerivation { + name = "ocaml${ocaml.version}-ppx_type_conv-133.33.02+4.03"; + src = fetchurl { + url = http://ocaml.janestreet.com/ocaml-core/113.33/files/ppx_type_conv-113.33.02+4.03.tar.gz; + sha256 = "0y7hsh152gcj89i6cr3b9kxgdnb2sx8vhaq2bdvbcc9zrirwq4d2"; + }; + + buildInputs = [ ocaml findlib ocamlbuild opam ppx_deriving ]; + propagatedBuildInputs = [ ppx_core ppx_driver ]; + + inherit (topkg) installPhase; + + meta = { + license = stdenv.lib.licenses.asl20; + inherit (ocaml.meta) platforms; + }; +} diff --git a/pkgs/development/ocaml-modules/janestreet/ppx_typerep_conv-113_33_00.nix b/pkgs/development/ocaml-modules/janestreet/ppx_typerep_conv-113_33_00.nix new file mode 100644 index 000000000000..69a4ad7e69a4 --- /dev/null +++ b/pkgs/development/ocaml-modules/janestreet/ppx_typerep_conv-113_33_00.nix @@ -0,0 +1,21 @@ +{ stdenv, fetchurl, ocaml, findlib, ocamlbuild, opam, topkg +, typerep, ppx_tools, ppx_type_conv, ppx_deriving +}: + +stdenv.mkDerivation { + name = "ocaml${ocaml.version}-ppx_typerep_conv-113.33.00+4.03"; + src = fetchurl { + url = http://ocaml.janestreet.com/ocaml-core/113.33/files/ppx_typerep_conv-113.33.00+4.03.tar.gz; + sha256 = "0k03wp07jvv3zpsm8n5hvskd5iagjvpcpxj9rpj012nia5iqfaj6"; + }; + + buildInputs = [ ocaml findlib ocamlbuild opam ppx_tools ]; + propagatedBuildInputs = [ ppx_type_conv typerep ppx_deriving ]; + + inherit (topkg) installPhase; + + meta = { + license = stdenv.lib.licenses.asl20; + inherit (ocaml.meta) platforms; + }; +} diff --git a/pkgs/development/ocaml-modules/janestreet/ppx_variants_conv-113_33_00.nix b/pkgs/development/ocaml-modules/janestreet/ppx_variants_conv-113_33_00.nix new file mode 100644 index 000000000000..fb8a994790cb --- /dev/null +++ b/pkgs/development/ocaml-modules/janestreet/ppx_variants_conv-113_33_00.nix @@ -0,0 +1,21 @@ +{ stdenv, fetchurl, ocaml, findlib, ocamlbuild, opam, topkg +, variantslib, ppx_deriving, ppx_type_conv +}: + +stdenv.mkDerivation { + name = "ocaml${ocaml.version}-ppx_variants_conv-113.33.00+4.03"; + src = fetchurl { + url = http://ocaml.janestreet.com/ocaml-core/113.33/files/ppx_variants_conv-113.33.00+4.03.tar.gz; + sha256 = "0il0nkdwwsc1ymshj4q9nzw5ixm12ls0jj7z3q16k48bg3z5ibc0"; + }; + + buildInputs = [ ocaml findlib ocamlbuild opam ]; + propagatedBuildInputs = [ variantslib ppx_deriving ppx_type_conv ]; + + inherit (topkg) installPhase; + + meta = { + license = stdenv.lib.licenses.asl20; + inherit (ocaml.meta) platforms; + }; +} diff --git a/pkgs/development/ocaml-modules/janestreet/sexplib-113_33_00.nix b/pkgs/development/ocaml-modules/janestreet/sexplib-113_33_00.nix new file mode 100644 index 000000000000..4f86f080738a --- /dev/null +++ b/pkgs/development/ocaml-modules/janestreet/sexplib-113_33_00.nix @@ -0,0 +1,18 @@ +{ stdenv, fetchurl, ocaml, findlib, ocamlbuild, opam, topkg }: + +stdenv.mkDerivation { + name = "ocaml${ocaml.version}-sexplib-113.33.00+4.03"; + src = fetchurl { + url = http://ocaml.janestreet.com/ocaml-core/113.33/files/sexplib-113.33.00+4.03.tar.gz; + sha256 = "1dirdrags3z8m80z1vczfnpdfzgcvm2wyy7g61fxdr8h3jgixpl3"; + }; + + buildInputs = [ ocaml findlib ocamlbuild opam ]; + + inherit (topkg) installPhase; + + meta = { + license = stdenv.lib.licenses.asl20; + inherit (ocaml.meta) platforms; + }; +} diff --git a/pkgs/development/ocaml-modules/mparser/default.nix b/pkgs/development/ocaml-modules/mparser/default.nix new file mode 100644 index 000000000000..6490eeb2f38c --- /dev/null +++ b/pkgs/development/ocaml-modules/mparser/default.nix @@ -0,0 +1,25 @@ +{ stdenv, fetchzip, ocaml, findlib, ocamlbuild }: + +stdenv.mkDerivation { + name = "ocaml${ocaml.version}-mparser-1.2.1"; + src = fetchzip { + url = http://github.com/cakeplus/mparser/archive/1.2.1.tar.gz; + sha256 = "1g1r3p0inmm5xwh9i5mrc4s414b0j8l13a66hpvwhqcpp6qglfh3"; + }; + + buildInputs = [ ocaml findlib ocamlbuild ]; + + configurePhase = "ocaml setup.ml -configure"; + buildPhase = "ocaml setup.ml -build"; + installPhase = "ocaml setup.ml -install"; + + createFindlibDestdir = true; + + meta = { + description = "A simple monadic parser combinator OCaml library"; + license = stdenv.lib.licenses.lgpl21Plus; + homepage = https://github.com/cakeplus/mparser; + maintainers = [ stdenv.lib.maintainers.vbgl ]; + inherit (ocaml.meta) platforms; + }; +} diff --git a/pkgs/development/ocaml-modules/ocsigen-server/default.nix b/pkgs/development/ocaml-modules/ocsigen-server/default.nix index 5c424cfe0599..8d949497b465 100644 --- a/pkgs/development/ocaml-modules/ocsigen-server/default.nix +++ b/pkgs/development/ocaml-modules/ocsigen-server/default.nix @@ -1,6 +1,6 @@ {stdenv, fetchurl, ocaml, findlib, which, ocaml_react, ocaml_ssl, ocaml_lwt, ocamlnet, ocaml_pcre, cryptokit, tyxml, ipaddr, zlib, -libev, openssl, ocaml_sqlite3, tree, uutf, makeWrapper +libev, openssl, ocaml_sqlite3, tree, uutf, makeWrapper, camlp4 }: let mkpath = p: n: @@ -18,7 +18,7 @@ stdenv.mkDerivation { buildInputs = [ocaml which findlib ocaml_react ocaml_ssl ocaml_lwt ocamlnet ocaml_pcre cryptokit tyxml ipaddr zlib libev openssl - ocaml_sqlite3 tree uutf makeWrapper ]; + ocaml_sqlite3 tree uutf makeWrapper camlp4 ]; configureFlags = "--root $(out) --prefix /"; diff --git a/pkgs/development/ocaml-modules/ojquery/default.nix b/pkgs/development/ocaml-modules/ojquery/default.nix index 93da2ed693aa..ec4a6114810b 100644 --- a/pkgs/development/ocaml-modules/ojquery/default.nix +++ b/pkgs/development/ocaml-modules/ojquery/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchgit, ocaml, findlib, js_of_ocaml, camlp4 }: +{ stdenv, fetchgit, ocaml, findlib, ocamlbuild, js_of_ocaml, camlp4 }: stdenv.mkDerivation rec { version = "0.1"; @@ -9,7 +9,7 @@ stdenv.mkDerivation rec { sha256 = "1n01bsk4car40p94fk1ssvww0inqapwwhdylmrb7vv40drsdldp1"; }; - buildInputs = [ ocaml findlib ]; + buildInputs = [ ocaml findlib ocamlbuild ]; propagatedBuildInputs = [ js_of_ocaml camlp4 ]; createFindlibDestdir = true; diff --git a/pkgs/development/ocaml-modules/ppx_tools/default.nix b/pkgs/development/ocaml-modules/ppx_tools/default.nix index 62aa97de5fa6..ddc3dec898dc 100644 --- a/pkgs/development/ocaml-modules/ppx_tools/default.nix +++ b/pkgs/development/ocaml-modules/ppx_tools/default.nix @@ -26,6 +26,8 @@ in createFindlibDestdir = true; + dontStrip = true; + meta = with stdenv.lib; { description = "Tools for authors of ppx rewriters"; homepage = http://www.lexifi.com/ppx_tools; diff --git a/pkgs/development/ocaml-modules/tuntap/default.nix b/pkgs/development/ocaml-modules/tuntap/default.nix index de520c643fe2..3a3e90c9d0fa 100644 --- a/pkgs/development/ocaml-modules/tuntap/default.nix +++ b/pkgs/development/ocaml-modules/tuntap/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchzip, ocaml, findlib, ipaddr }: +{ stdenv, fetchzip, ocaml, findlib, ocamlbuild, ipaddr }: assert stdenv.lib.versionAtLeast (stdenv.lib.getVersion ocaml) "4.01"; @@ -10,7 +10,7 @@ stdenv.mkDerivation { sha256 = "1cmd4kky875ks02gm2nb8yr80hmlfcnjdfyc63hvkh49acssy3d5"; }; - buildInputs = [ ocaml findlib ]; + buildInputs = [ ocaml findlib ocamlbuild ]; propagatedBuildInputs = [ ipaddr ]; createFindlibDestdir = true; diff --git a/pkgs/development/ocaml-modules/uri/default.nix b/pkgs/development/ocaml-modules/uri/default.nix index c7d991504ec9..ae41c8729607 100644 --- a/pkgs/development/ocaml-modules/uri/default.nix +++ b/pkgs/development/ocaml-modules/uri/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchzip, ocaml, findlib, re, stringext, ounit +{ stdenv, fetchzip, ocaml, findlib, ocamlbuild, re, stringext, ounit , sexplib, ppx_sexp_conv , legacyVersion ? false , sexplib_p4 @@ -24,7 +24,7 @@ stdenv.mkDerivation { inherit sha256; }; - buildInputs = [ ocaml findlib ounit ] + buildInputs = [ ocaml findlib ocamlbuild ounit ] ++ stdenv.lib.optional (!legacyVersion) ppx_sexp_conv; propagatedBuildInputs = [ re (if legacyVersion then sexplib_p4 else sexplib) stringext ]; diff --git a/pkgs/development/python-modules/flake8-blind-except/default.nix b/pkgs/development/python-modules/flake8-blind-except/default.nix new file mode 100644 index 000000000000..88b4f811e944 --- /dev/null +++ b/pkgs/development/python-modules/flake8-blind-except/default.nix @@ -0,0 +1,16 @@ +{ lib, fetchurl, buildPythonPackage }: + +buildPythonPackage rec { + name = "flake8-blind-except-${version}"; + version = "0.1.1"; + src = fetchurl { + url = "mirror://pypi/f/flake8-blind-except/${name}.tar.gz"; + sha256 = "16g58mkr3fcn2vlfhp3rlahj93qswc7jd5qrqp748mc26dk3b8xc"; + }; + meta = { + homepage = https://github.com/elijahandrews/flake8-blind-except; + description = "A flake8 extension that checks for blind except: statements"; + maintainers = with lib.maintainers; [ johbo ]; + license = lib.licenses.mit; + }; +} diff --git a/pkgs/development/python-modules/flake8-debugger/default.nix b/pkgs/development/python-modules/flake8-debugger/default.nix new file mode 100644 index 000000000000..b383c5db0083 --- /dev/null +++ b/pkgs/development/python-modules/flake8-debugger/default.nix @@ -0,0 +1,18 @@ +{ lib, fetchurl, buildPythonPackage, flake8, nose }: + +buildPythonPackage rec { + name = "flake8-debugger-${version}"; + version = "1.4.0"; + src = fetchurl { + url = "mirror://pypi/f/flake8-debugger/${name}.tar.gz"; + sha256 = "0chjfa6wvnqjnx778qzahhwvjx1j0rc8ax0ipp5bn70gf47lj62r"; + }; + buildInputs = [ nose ]; + propagatedBuildInputs = [ flake8 ]; + meta = { + homepage = https://github.com/jbkahn/flake8-debugger; + description = "ipdb/pdb statement checker plugin for flake8"; + maintainers = with lib.maintainers; [ johbo ]; + license = lib.licenses.mit; + }; +} diff --git a/pkgs/development/python-modules/libasyncns.nix b/pkgs/development/python-modules/libasyncns/default.nix index de0d6ea610d8..63bcad285c4e 100644 --- a/pkgs/development/python-modules/libasyncns.nix +++ b/pkgs/development/python-modules/libasyncns/default.nix @@ -10,6 +10,8 @@ buildPythonPackage rec { sha256 = "1q4l71b2h9q756x4pjynp6kczr2d8c1jvbdp982hf7xzv7w5gxqg"; }; + patches = [ ./libasyncns-fix-res-consts.patch ]; + buildInputs = [ libasyncns ]; nativeBuildInputs = [ pkgconfig ]; doCheck = false; # requires network access diff --git a/pkgs/development/python-modules/libasyncns/libasyncns-fix-res-consts.patch b/pkgs/development/python-modules/libasyncns/libasyncns-fix-res-consts.patch new file mode 100644 index 000000000000..62877300a276 --- /dev/null +++ b/pkgs/development/python-modules/libasyncns/libasyncns-fix-res-consts.patch @@ -0,0 +1,14 @@ +diff --git a/libasyncns.c b/libasyncns.c +index 99a73de..85709b0 100644 +--- a/libasyncns.c ++++ b/libasyncns.c +@@ -134,9 +134,8 @@ PyMODINIT_FUNC initlibasyncns(void) + ADDNSCONST(ns_t_mailb); + ADDNSCONST(ns_t_maila); + ADDNSCONST(ns_t_any); +- ADDNSCONST(ns_t_zxfr); + ADDNSCONST(ns_t_max); + + ADDNSCONST(ns_c_invalid); + ADDNSCONST(ns_c_in); + ADDNSCONST(ns_c_2); diff --git a/pkgs/development/python-modules/protobuf.nix b/pkgs/development/python-modules/protobuf.nix index 8b9d1ddb03c4..f2f0f5025d11 100644 --- a/pkgs/development/python-modules/protobuf.nix +++ b/pkgs/development/python-modules/protobuf.nix @@ -1,5 +1,5 @@ { stdenv, python, buildPythonPackage -, protobuf, google_apputils +, protobuf, google_apputils, pyext , disabled, doCheck ? true }: with stdenv.lib; @@ -9,7 +9,7 @@ buildPythonPackage rec { inherit disabled doCheck; propagatedBuildInputs = [ protobuf google_apputils ]; - buildInputs = [ google_apputils ]; + buildInputs = [ google_apputils pyext ]; prePatch = '' while [ ! -d python ]; do diff --git a/pkgs/development/python-modules/pyext/default.nix b/pkgs/development/python-modules/pyext/default.nix new file mode 100644 index 000000000000..6f03a2edf797 --- /dev/null +++ b/pkgs/development/python-modules/pyext/default.nix @@ -0,0 +1,19 @@ +{ stdenv, buildPythonPackage, fetchPypi }: + +buildPythonPackage rec { + name = pname + "-" + version; + pname = "pyext"; + version = "0.7"; + + src = fetchPypi { + inherit pname version; + sha256 = "1pvwjkrjqajzh4wiiw1mzqp0bb81cqc2gk23nj24m32fpqssc676"; + }; + + meta = with stdenv.lib; { + description = "Simple Python extensions."; + homepage = "https://github.com/kirbyfan64/PyExt"; + license = licenses.mit; + maintainers = with maintainers; [ edwtjo ]; + }; +} diff --git a/pkgs/development/python-modules/python-stdnum/default.nix b/pkgs/development/python-modules/python-stdnum/default.nix new file mode 100644 index 000000000000..fe85b7bb0d34 --- /dev/null +++ b/pkgs/development/python-modules/python-stdnum/default.nix @@ -0,0 +1,18 @@ +{ lib, fetchurl, buildPythonPackage, isPy3k }: + +buildPythonPackage rec { + name = "python-stdnum-${version}"; + version = "1.5"; + # Failing tests and dependency issue on Py3k + disabled = isPy3k; + src = fetchurl { + url = "mirror://pypi/p/python-stdnum/${name}.tar.gz"; + sha256 = "0zkkpjy4gc161dkyxjmingjw48glljlqqrl4fh2k5idf0frkvzhh"; + }; + meta = { + homepage = "http://arthurdejong.org/python-stdnum/"; + description = "Python module to handle standardized numbers and codes"; + maintainers = with lib.maintainers; [ johbo ]; + license = lib.licenses.lgpl2Plus; + }; +} diff --git a/pkgs/development/python-modules/pywebdav/default.nix b/pkgs/development/python-modules/pywebdav/default.nix new file mode 100644 index 000000000000..27925a619f2f --- /dev/null +++ b/pkgs/development/python-modules/pywebdav/default.nix @@ -0,0 +1,17 @@ +{ lib, fetchurl, buildPythonPackage, isPy3k }: + +buildPythonPackage rec { + name = "PyWebDAV-${version}"; + version = "0.9.8"; + disabled = isPy3k; + src = fetchurl { + url = "mirror://pypi/p/pywebdav/${name}.tar.gz"; + sha256 = "1v10vg79h85milnq8w7yd75qq5z6297ywkn9b2kxajldzwqxn3ji"; + }; + meta = { + homepage = http://code.google.com/p/pywebdav/; + description = "WebDAV library including a standalone server for python"; + maintainers = with lib.maintainers; [ johbo ]; + license = lib.licenses.gpl2Plus; + }; +} diff --git a/pkgs/development/python-modules/pyzufall/default.nix b/pkgs/development/python-modules/pyzufall/default.nix new file mode 100644 index 000000000000..5777a6137ae4 --- /dev/null +++ b/pkgs/development/python-modules/pyzufall/default.nix @@ -0,0 +1,30 @@ +{ stdenv, fetchurl, python, buildPythonPackage, nose, future, coverage }: + +buildPythonPackage rec { + pname = "PyZufall"; + version = "0.13.2"; + name = "${pname}-${version}"; + + src = fetchurl { + url = "mirror://pypi/${builtins.substring 0 1 pname}/${pname}/${name}.tar.gz"; + sha256 = "1jffhi20m82fdf78bjhncbdxkfzcskrlipxlrqq9741xdvrn14b5"; + }; + + # disable tests due to problem with nose + # https://github.com/nose-devs/nose/issues/1037 + doCheck = false; + + buildInputs = [ nose coverage ]; + propagatedBuildInputs = [ future ]; + + checkPhase = '' + ${python.interpreter} setup.py nosetests + ''; + + meta = with stdenv.lib; { + homepage = "https://pyzufall.readthedocs.io/de/latest/"; + description = "Library for generating random data and sentences in german language"; + license = licenses.gpl3Plus; + maintainers = with maintainers; [ davidak ]; + }; +} diff --git a/pkgs/development/python-modules/simpleeval/default.nix b/pkgs/development/python-modules/simpleeval/default.nix new file mode 100644 index 000000000000..cd77f66b56eb --- /dev/null +++ b/pkgs/development/python-modules/simpleeval/default.nix @@ -0,0 +1,16 @@ +{ lib, fetchurl, buildPythonPackage }: + +buildPythonPackage rec { + name = "simpleeval-${version}"; + version = "0.9.5"; + src = fetchurl { + url = "mirror://pypi/s/simpleeval/${name}.tar.gz"; + sha256 = "0sda13bqg9l4j17iczmfanxbzsg6fm9aw8i3crzsjfxx51rwj1i3"; + }; + meta = { + homepage = "https://github.com/danthedeckie/simpleeval"; + description = "A simple, safe single expression evaluator library"; + maintainers = with lib.maintainers; [ johbo ]; + license = lib.licenses.mit; + }; +} diff --git a/pkgs/development/python-modules/tensorflow/cuda.nix b/pkgs/development/python-modules/tensorflow/cuda.nix deleted file mode 100644 index 05a4cc3e4c18..000000000000 --- a/pkgs/development/python-modules/tensorflow/cuda.nix +++ /dev/null @@ -1,52 +0,0 @@ -{ stdenv -, fetchurl -, buildPythonPackage -, swig -, numpy -, six -, protobuf3_0 -, cudatoolkit75 -, cudnn5_cudatoolkit75 -, gcc49 -, zlib -, linuxPackages -, mock -}: - -buildPythonPackage rec { - pname = "tensorflow"; - version = "0.11.0rc0"; - name = "${pname}-${version}"; - format = "wheel"; - - src = fetchurl { - url = "https://storage.googleapis.com/tensorflow/linux/gpu/tensorflow-${version}-cp27-none-linux_x86_64.whl"; - sha256 = "1r8zlz95sw7bnjzg5zdbpa9dj8wmp8cvvgyl9sv3amsscagnnfj5"; - }; - - buildInputs = [ swig ]; - propagatedBuildInputs = [ numpy six protobuf3_0 cudatoolkit75 cudnn5_cudatoolkit75 gcc49 mock ]; - - # Note that we need to run *after* the fixup phase because the - # libraries are loaded at runtime. If we run in preFixup then - # patchelf --shrink-rpath will remove the cuda libraries. - postFixup = let - rpath = stdenv.lib.makeLibraryPath [ - gcc49.cc.lib - zlib cudatoolkit75 - cudnn5_cudatoolkit75 - linuxPackages.nvidia_x11 - ]; - in '' - find $out -name '*.so' -exec patchelf --set-rpath "${rpath}" {} \; - ''; - - doCheck = false; - - meta = with stdenv.lib; { - description = "TensorFlow helps the tensors flow (no gpu support)"; - homepage = http://tensorflow.org; - license = licenses.asl20; - platforms = platforms.linux; - }; -} diff --git a/pkgs/development/python-modules/tensorflow/default.nix b/pkgs/development/python-modules/tensorflow/default.nix index f8bc35eb5684..9357ea90b405 100644 --- a/pkgs/development/python-modules/tensorflow/default.nix +++ b/pkgs/development/python-modules/tensorflow/default.nix @@ -1,15 +1,29 @@ { stdenv , fetchurl , buildPythonPackage +, isPy35, isPy27 +, cudaSupport ? false +, cudatoolkit75 ? null +, cudnn5_cudatoolkit75 ? null +, gcc49 ? null +, linuxPackages ? null , numpy , six -, protobuf3_0_0b2 +, protobuf3_2 , swig , mock , gcc , zlib }: +assert cudaSupport -> cudatoolkit75 != null + && cudnn5_cudatoolkit75 != null + && gcc49 != null + && linuxPackages != null; + +# unsupported combination +assert ! (stdenv.isDarwin && cudaSupport); + # tensorflow is built from a downloaded wheel, because the upstream # project's build system is an arcane beast based on # bazel. Untangling it and building the wheel from source is an open @@ -17,32 +31,96 @@ buildPythonPackage rec { pname = "tensorflow"; - version = "0.10.0"; + version = "1.0.0"; name = "${pname}-${version}"; format = "wheel"; + disabled = ! (isPy35 || isPy27); - src = fetchurl { - url = if stdenv.isDarwin then - "https://storage.googleapis.com/tensorflow/mac/cpu/tensorflow-${version}-py2-none-any.whl" else - "https://storage.googleapis.com/tensorflow/linux/cpu/tensorflow-${version}-cp27-none-linux_x86_64.whl"; - sha256 = if stdenv.isDarwin then - "1gjybh3j3rn34bzhsxsfdbqgsr4jh50qyx2wqywvcb24fkvy40j9" else - "0g05pa4z6kdy0giz7hjgjgwf4zzr5l8cf1zh247ymixlikn3fnpx"; - }; + src = let + tfurl = sys: proc: pykind: + let + tfpref = if proc == "gpu" + then "gpu/tensorflow_gpu" + else "cpu/tensorflow"; + in + "https://storage.googleapis.com/tensorflow/${sys}/${tfpref}-${version}-${pykind}.whl"; + dls = + { + darwin.cpu = { + py2 = { + url = tfurl "mac" "cpu" "py2-none-any" ; + sha256 = "15ayil28p20wkgpwkr4mz0imjxnf049xx4117jspg1qkjg2bn1b2"; + }; + py3 = { + url = tfurl "mac" "cpu" "py3-none-any" ; + sha256 = "1ynyhbm7yrp421364s49a1r3p83zxy74iiy5c4hx2xm5c4gs29an"; + }; + }; + linux-x86_64.cpu = { + py2 = { + url = tfurl "linux" "cpu" "cp27-none-linux_x86_64"; + sha256 = "1hwhq1qhjrfkqfkxpsrq6mdmdibnqr3n7xvzkxp6gaqj73vn5ch2"; + }; + py3 = { + url = tfurl "linux" "cpu" "cp35-cp35m-linux_x86_64"; + sha256 = "0jx2mmlw0nxah9l25r46i7diqiv31qcz7855n250lsxfwcppy7y3"; + }; + }; + linux-x86_64.cuda = { + py2 = { + url = tfurl "linux" "gpu" "cp27-none-linux_x86_64"; + sha256 = "0l8f71x3ama5a6idj05jrswlmp4yg37fxhz8lx2xmgk14aszbcy5"; + }; + py3 = { + url = tfurl "linux" "gpu" "cp35-cp35m-linux_x86_64"; + sha256 = "12q7s0yk0h3r4glh0fhl1fcdx7jl8xikwwp04a1lcagasr51s36m"; + }; + }; + }; + in + fetchurl ( + if stdenv.isDarwin then + if isPy35 then + dls.darwin.cpu.py3 + else + dls.darwin.cpu.py2 + else if isPy35 then + if cudaSupport then + dls.linux-x86_64.cuda.py3 + else dls.linux-x86_64.cpu.py3 + else + if cudaSupport then + dls.linux-x86_64.cuda.py2 + else + dls.linux-x86_64.cpu.py2 + ); - propagatedBuildInputs = [ numpy six protobuf3_0_0b2 swig mock]; + propagatedBuildInputs = with stdenv.lib; + [ numpy six protobuf3_2 swig mock ] + ++ optionals cudaSupport [ cudatoolkit75 cudnn5_cudatoolkit75 gcc49 ]; - preFixup = '' - RPATH="${stdenv.lib.makeLibraryPath [ gcc.cc.lib zlib ]}" - find $out -name '*.so' -exec patchelf --set-rpath "$RPATH" {} \; + # Note that we need to run *after* the fixup phase because the + # libraries are loaded at runtime. If we run in preFixup then + # patchelf --shrink-rpath will remove the cuda libraries. + postFixup = let + rpath = stdenv.lib.makeLibraryPath + (if cudaSupport then + [ gcc49.cc.lib zlib cudatoolkit75 cudnn5_cudatoolkit75 + linuxPackages.nvidia_x11 ] + else + [ gcc.cc.lib zlib ] + ); + in + '' + find $out -name '*.so' -exec patchelf --set-rpath "${rpath}" {} \; ''; doCheck = false; meta = with stdenv.lib; { - description = "TensorFlow helps the tensors flow (no gpu support)"; + description = "TensorFlow helps the tensors flow"; homepage = http://tensorflow.org; license = licenses.asl20; - platforms = with platforms; linux ++ darwin; + platforms = with platforms; if cudaSupport then linux else linux ++ darwin; }; } diff --git a/pkgs/development/r-modules/README.md b/pkgs/development/r-modules/README.md index cb962e138c50..0d9c1490d2b9 100644 --- a/pkgs/development/r-modules/README.md +++ b/pkgs/development/r-modules/README.md @@ -87,6 +87,8 @@ this into your user profile. ## Updating the package set ```bash +nix-shell generate-shell.nix + Rscript generate-r-packages.R cran > cran-packages.nix.new mv cran-packages.nix.new cran-packages.nix diff --git a/pkgs/development/r-modules/bioc-annotation-packages.nix b/pkgs/development/r-modules/bioc-annotation-packages.nix index 4519953ad5ca..25a89d94ebaf 100644 --- a/pkgs/development/r-modules/bioc-annotation-packages.nix +++ b/pkgs/development/r-modules/bioc-annotation-packages.nix @@ -4,7 +4,7 @@ # Rscript generate-r-packages.R bioc-annotation >new && mv new bioc-annotation-packages.nix { self, derive }: -let derive2 = derive { rVersion = "3.2"; }; +let derive2 = derive { rVersion = "3.3"; }; in with self; { BSgenome_Alyrata_JGI_v1 = derive2 { name="BSgenome.Alyrata.JGI.v1"; version="1.0.0"; sha256="06549kkzy36n378zb61lrf9zardncp7i20r73rmmiq1pnfjp3gww"; depends=[BSgenome]; }; BSgenome_Amellifera_BeeBase_assembly4 = derive2 { name="BSgenome.Amellifera.BeeBase.assembly4"; version="1.4.0"; sha256="02zs16q441zcbfp7xvv1gny5nn02ivfr8md1wh5s5rpnj6sdl6kj"; depends=[BSgenome]; }; @@ -20,6 +20,7 @@ in with self; { BSgenome_Btaurus_UCSC_bosTau6_masked = derive2 { name="BSgenome.Btaurus.UCSC.bosTau6.masked"; version="1.3.99"; sha256="07isv0lcvlsl0aha1p474l0pps0j7bsh455m33vfxwahivqsfy27"; depends=[BSgenome BSgenome_Btaurus_UCSC_bosTau6]; }; BSgenome_Btaurus_UCSC_bosTau8 = derive2 { name="BSgenome.Btaurus.UCSC.bosTau8"; version="1.4.2"; sha256="16wjy1aw9nvx03r7w8yh5w7sw3pn8i9nczd0n0728l6nnyqxlsz6"; depends=[BSgenome]; }; BSgenome_Celegans_UCSC_ce10 = derive2 { name="BSgenome.Celegans.UCSC.ce10"; version="1.4.0"; sha256="1zaym97jk4npxk14ifvwz2rvhm4zx9xgs33r9vvx9rlynp0gydrk"; depends=[BSgenome]; }; + BSgenome_Celegans_UCSC_ce11 = derive2 { name="BSgenome.Celegans.UCSC.ce11"; version="1.4.2"; sha256="0d4bxfglpqiv1f0n6imdgz101g9383hfj3ra91268wryzlm0yk5w"; depends=[BSgenome]; }; BSgenome_Celegans_UCSC_ce2 = derive2 { name="BSgenome.Celegans.UCSC.ce2"; version="1.4.0"; sha256="1x7nvisz7mjrpqlsiw4an04f8hksygzn96p5ld0388hljg78dax8"; depends=[BSgenome]; }; BSgenome_Celegans_UCSC_ce6 = derive2 { name="BSgenome.Celegans.UCSC.ce6"; version="1.4.0"; sha256="0mqzb353xv2c3m3vkb315dkmnxkgczp7ndnknyhpgjlybyf715v9"; depends=[BSgenome]; }; BSgenome_Cfamiliaris_UCSC_canFam2 = derive2 { name="BSgenome.Cfamiliaris.UCSC.canFam2"; version="1.4.0"; sha256="052p2lsm1ny0rjvhgd56w6z4nrqfc74vh0q7cmqz55xkhk01h7hm"; depends=[BSgenome]; }; @@ -45,7 +46,7 @@ in with self; { BSgenome_Ggallus_UCSC_galGal3_masked = derive2 { name="BSgenome.Ggallus.UCSC.galGal3.masked"; version="1.3.99"; sha256="0igi02g46h1j87hv9bk45nbqahyjd0k75jkg0s6m9a62jsssg63l"; depends=[BSgenome BSgenome_Ggallus_UCSC_galGal3]; }; BSgenome_Ggallus_UCSC_galGal4 = derive2 { name="BSgenome.Ggallus.UCSC.galGal4"; version="1.4.0"; sha256="1qfl046akdf43azigprc13sssgbmxdz9dmlrvy13ag8fgfkjxign"; depends=[BSgenome]; }; BSgenome_Ggallus_UCSC_galGal4_masked = derive2 { name="BSgenome.Ggallus.UCSC.galGal4.masked"; version="1.3.99"; sha256="0fvqimjf1xvgka4nw66nd0rbyb7r93v8cyw33776lhfv68ny058v"; depends=[BSgenome BSgenome_Ggallus_UCSC_galGal4]; }; - BSgenome_Hsapiens_1000genomes_hs37d5 = derive2 { name="BSgenome.Hsapiens.1000genomes.hs37d5"; version="0.99.0"; sha256="0fnap8bxjn8xc38ihsbyi60q86cgvlznz9d1dl13q2ydb5bb1ryb"; depends=[BSgenome]; }; + BSgenome_Hsapiens_1000genomes_hs37d5 = derive2 { name="BSgenome.Hsapiens.1000genomes.hs37d5"; version="0.99.1"; sha256="1cg0g5fqmsvwyw2p9hp2yy4ilk21jkbbrnpgqvb5c36ihjwvc7sr"; depends=[BSgenome]; }; BSgenome_Hsapiens_NCBI_GRCh38 = derive2 { name="BSgenome.Hsapiens.NCBI.GRCh38"; version="1.3.1000"; sha256="0y75qdq578fh6420vbvsbwmdw8jvr3g06qli2h3vj3pxmjykh9c1"; depends=[BSgenome]; }; BSgenome_Hsapiens_UCSC_hg17 = derive2 { name="BSgenome.Hsapiens.UCSC.hg17"; version="1.3.1000"; sha256="1q8p0zp5xpp22znwnygl3jhc159db4q3kkpj5wfij5a6z19zs1w3"; depends=[BSgenome]; }; BSgenome_Hsapiens_UCSC_hg17_masked = derive2 { name="BSgenome.Hsapiens.UCSC.hg17.masked"; version="1.3.99"; sha256="1pg39kmbmnync0xxdbgsn6gpz78hfbzd7iffidpv8mfk734srwzn"; depends=[BSgenome BSgenome_Hsapiens_UCSC_hg17]; }; @@ -61,6 +62,7 @@ in with self; { BSgenome_Mmulatta_UCSC_rheMac2_masked = derive2 { name="BSgenome.Mmulatta.UCSC.rheMac2.masked"; version="1.3.99"; sha256="1j4z4iy13n4qbi9a50qw1hn8z14xz0z8hbiwhy2bb9znykkf4chd"; depends=[BSgenome BSgenome_Mmulatta_UCSC_rheMac2]; }; BSgenome_Mmulatta_UCSC_rheMac3 = derive2 { name="BSgenome.Mmulatta.UCSC.rheMac3"; version="1.4.0"; sha256="0r3v4p567rxcczwqi7zdz7pmdiffgrq83j488libdb4s0hdg5jmi"; depends=[BSgenome]; }; BSgenome_Mmulatta_UCSC_rheMac3_masked = derive2 { name="BSgenome.Mmulatta.UCSC.rheMac3.masked"; version="1.3.99"; sha256="0k3j40hrys60qdij5rsxdzyx9bfmryaki5p7i4d5m0xmldlk9anr"; depends=[BSgenome BSgenome_Mmulatta_UCSC_rheMac3]; }; + BSgenome_Mmulatta_UCSC_rheMac8 = derive2 { name="BSgenome.Mmulatta.UCSC.rheMac8"; version="1.4.2"; sha256="18z6vl89jkjzvppz3r93b2s32l17hz6pfp36wv5wvhm0c0rhnhmw"; depends=[BSgenome]; }; BSgenome_Mmusculus_UCSC_mm10 = derive2 { name="BSgenome.Mmusculus.UCSC.mm10"; version="1.4.0"; sha256="12s0nm2na9brjad4rn9l7d3db2aj8qa1xvz0y1k7gk08wayb6bkf"; depends=[BSgenome]; }; BSgenome_Mmusculus_UCSC_mm10_masked = derive2 { name="BSgenome.Mmusculus.UCSC.mm10.masked"; version="1.3.99"; sha256="12d7fkzh0b39b8f6qbgx07x5bmab91is4y846lp4zpbm3iya01g9"; depends=[BSgenome BSgenome_Mmusculus_UCSC_mm10]; }; BSgenome_Mmusculus_UCSC_mm8 = derive2 { name="BSgenome.Mmusculus.UCSC.mm8"; version="1.4.0"; sha256="1al34aa11d6kr0cr4xrabix1xmqc96zzgik5p4yc8r0rba3n100a"; depends=[BSgenome]; }; @@ -88,7 +90,8 @@ in with self; { BSgenome_Tguttata_UCSC_taeGut2 = derive2 { name="BSgenome.Tguttata.UCSC.taeGut2"; version="1.4.2"; sha256="1ikbd5q77l2zmbmbm511s41h00627zi0gq31cm4qr3k1cvlz8617"; depends=[BSgenome]; }; BSgenome_Vvinifera_URGI_IGGP12Xv0 = derive2 { name="BSgenome.Vvinifera.URGI.IGGP12Xv0"; version="0.1"; sha256="1m8mqkiqs7291hccb8pfyf2yxpky45qr6j3d9wkvp9x3ra3h0yxf"; depends=[BSgenome]; }; BSgenome_Vvinifera_URGI_IGGP12Xv2 = derive2 { name="BSgenome.Vvinifera.URGI.IGGP12Xv2"; version="0.1"; sha256="1saavsi75gw33jphhm3qb5psyfrv850ss4cmqr4i7aw1kc0fvs1j"; depends=[BSgenome]; }; - ChemmineDrugs = derive2 { name="ChemmineDrugs"; version="0.99.3"; sha256="0m060izffk98p3jyv2k534nmz1labr69z9f8ns59pkwkwvjr00f8"; depends=[BiocGenerics ChemmineR RSQLite]; }; + BSgenome_Vvinifera_URGI_IGGP8X = derive2 { name="BSgenome.Vvinifera.URGI.IGGP8X"; version="0.1"; sha256="0v0hi2pbbi5ynd92bvbv4bzr7bgv48kvyz62hdv7k9gh7s5pg0id"; depends=[BSgenome]; }; + ChemmineDrugs = derive2 { name="ChemmineDrugs"; version="1.0.0"; sha256="0h4jxcb6vkf9ijljas7yvcx6vmrd5rpjgj202cf2jb9hx8h9497i"; depends=[BiocGenerics ChemmineR RSQLite]; }; DO_db = derive2 { name="DO.db"; version="2.9"; sha256="10bqqa124l61ivzy4mdd3z3ar9a6537qbxw23pc4y9w8a6dwnavn"; depends=[AnnotationDbi]; }; EnsDb_Hsapiens_v75 = derive2 { name="EnsDb.Hsapiens.v75"; version="0.99.12"; sha256="1yc912m6qvrqbmc9y4bxyr1l3vfq4pv751jagsqpvjlhgkdasn2p"; depends=[ensembldb GenomicFeatures]; }; EnsDb_Hsapiens_v79 = derive2 { name="EnsDb.Hsapiens.v79"; version="0.99.12"; sha256="1r09wksknhsa42aq2xdwnyd0agsw46fnxijb5nkx1avhp82zlpp2"; depends=[ensembldb GenomicFeatures]; }; @@ -102,137 +105,144 @@ in with self; { FDb_UCSC_snp135common_hg19 = derive2 { name="FDb.UCSC.snp135common.hg19"; version="1.0.0"; sha256="1ykyixrbw86ajx65w1jwr068ma5cvzl4kypaw77kpggmf1qqgkxp"; depends=[AnnotationDbi GenomicFeatures]; }; FDb_UCSC_snp137common_hg19 = derive2 { name="FDb.UCSC.snp137common.hg19"; version="1.0.0"; sha256="1q1r7rk29q0zlzxz6fvfy1kjfli6wxzvhvhhfnf3z4ksy5332q63"; depends=[AnnotationDbi GenomicFeatures]; }; FDb_UCSC_tRNAs = derive2 { name="FDb.UCSC.tRNAs"; version="1.0.1"; sha256="1dymdalx9fzrplxyc0fd9faa4r5jimi7zyry9k65lyz1pabpkwqz"; depends=[AnnotationDbi GenomicFeatures]; }; + FlowSorted_CordBloodNorway_450k = derive2 { name="FlowSorted.CordBloodNorway.450k"; version="0.99.1"; sha256="0sfnrcg5f99d65grlc7ds9i03yrgn8c0p87sp7cqnmr6f2h3y7i4"; depends=[minfi]; }; GGHumanMethCancerPanelv1_db = derive2 { name="GGHumanMethCancerPanelv1.db"; version="1.4.1"; sha256="0ag1pkbh4mx4aplfrrz1q4f4cl05mczq9pcsfkd1071qk51dcwvx"; depends=[AnnotationDbi AnnotationForge org_Hs_eg_db]; }; - GO_db = derive2 { name="GO.db"; version="3.2.2"; sha256="00gariag9ampz82dh0xllrc26r85d7vdcwc0vca5zdy147rwxr7f"; depends=[AnnotationDbi]; }; + GO_db = derive2 { name="GO.db"; version="3.3.0"; sha256="0x2hkbhg9d8waw32hdn05887vv3zbs5aqff3mf5vfyzvl7xhgxy0"; depends=[AnnotationDbi]; }; Homo_sapiens = derive2 { name="Homo.sapiens"; version="1.3.1"; sha256="151vj7h5p1c8yd5swrchk46z469p135wk50hvkl0nhgndvy0jj01"; depends=[AnnotationDbi GenomicFeatures GO_db org_Hs_eg_db OrganismDbi TxDb_Hsapiens_UCSC_hg19_knownGene]; }; - Hs6UG171_db = derive2 { name="Hs6UG171.db"; version="3.2.2"; sha256="08m39vdmb0d93wlsianfnc284z0594szbjf68idazjnki7iy6mg4"; depends=[AnnotationDbi org_Hs_eg_db]; }; - HsAgilentDesign026652_db = derive2 { name="HsAgilentDesign026652.db"; version="3.2.2"; sha256="1hmnnjzh13jxvsbf7kzc01kzf527qpywr20q9j2smpljqva34jgj"; depends=[AnnotationDbi org_Hs_eg_db]; }; + Hs6UG171_db = derive2 { name="Hs6UG171.db"; version="3.2.3"; sha256="034aady3hy8j9bm7pbl8l8h0gcfnzmpyxg9l9s1ky0pj7ryzr93a"; depends=[AnnotationDbi org_Hs_eg_db]; }; + HsAgilentDesign026652_db = derive2 { name="HsAgilentDesign026652.db"; version="3.2.3"; sha256="0x6nxvzmc8k4qp382ca32y58awkxpg0b3kc7m1mz9iag6sq7c5vx"; depends=[AnnotationDbi org_Hs_eg_db]; }; Hspec = derive2 { name="Hspec"; version="0.99.1"; sha256="18paxil1976g7c7zyh02wxqj55ndbnshl27z0jhlzc2dwzagx7mb"; depends=[AnnotationDbi]; }; HuExExonProbesetLocation = derive2 { name="HuExExonProbesetLocation"; version="1.15.0"; sha256="0rpn9wh97gh9h795krfqnydxnliqnwgvp33xwqa4g8px3c34nmw1"; depends=[AnnotationDbi]; }; HuExExonProbesetLocationHg18 = derive2 { name="HuExExonProbesetLocationHg18"; version="0.0.2"; sha256="14lbmcb0166rgv25d24g7kng5nvddynvmszfk5mq1yl1spbh7j9g"; depends=[AnnotationDbi]; }; HuExExonProbesetLocationHg19 = derive2 { name="HuExExonProbesetLocationHg19"; version="0.0.3"; sha256="0h240v2wc2c935bxws6xpha4c0hw89bm821w1c1digwhd04kbyxh"; depends=[AnnotationDbi]; }; - HuO22_db = derive2 { name="HuO22.db"; version="3.2.2"; sha256="06vk5i3l3204gznafkrfxxgbm448bxnigjwfk3z3pz7a4097nf2p"; depends=[AnnotationDbi org_Hs_eg_db]; }; + HuO22_db = derive2 { name="HuO22.db"; version="3.2.3"; sha256="159ml83s9r8kcb0phh2zalcmzacn6d5z7vq6bg5ygy9l85vkcqsf"; depends=[AnnotationDbi org_Hs_eg_db]; }; IlluminaHumanMethylation27k_db = derive2 { name="IlluminaHumanMethylation27k.db"; version="1.4.8"; sha256="0zw0n4a9v42ifmvw2hfzzvl8jz1d7f00ia59ljhcvvw9aj12q4zs"; depends=[AnnotationDbi org_Hs_eg_db]; }; IlluminaHumanMethylation27kmanifest = derive2 { name="IlluminaHumanMethylation27kmanifest"; version="0.4.0"; sha256="1kvz6z7g61zdrc1i93wsk1zv5mwcswfkxkl114644q09djwbz1fx"; depends=[minfi]; }; IlluminaHumanMethylation450k_db = derive2 { name="IlluminaHumanMethylation450k.db"; version="2.0.9"; sha256="1zmm65qnm95w9c8z30c9vncca451npbhhnlkpkpp894svsakxziz"; depends=[AnnotationDbi org_Hs_eg_db]; }; IlluminaHumanMethylation450kanno_ilmn12_hg19 = derive2 { name="IlluminaHumanMethylation450kanno.ilmn12.hg19"; version="0.2.1"; sha256="1agvivsji3ppd9qwmf99kzyg5jrz1wnz3f0w07715xywc6pavvxl"; depends=[minfi]; }; IlluminaHumanMethylation450kmanifest = derive2 { name="IlluminaHumanMethylation450kmanifest"; version="0.4.0"; sha256="0qx75xwifrbkqmbkd8dhf44c34ibmbivqh7y8rvgrsizmi5ybcj1"; depends=[minfi]; }; IlluminaHumanMethylation450kprobe = derive2 { name="IlluminaHumanMethylation450kprobe"; version="2.0.6"; sha256="1iah0rw7d8qvgwvn6n2l4cln39ky010gqpd9shml45m48m6whiia"; depends=[AnnotationDbi]; }; - JazaeriMetaData_db = derive2 { name="JazaeriMetaData.db"; version="3.2.2"; sha256="08fvzg8zs0yyxqnjxbgqxfgphgyfm2yr21g1s414lkjixv16s6hd"; depends=[AnnotationDbi org_Hs_eg_db]; }; - KEGG_db = derive2 { name="KEGG.db"; version="3.2.2"; sha256="074dn5fy8b8p6mwb2l058sn9a3vy2j8isc5fv9vnmn0p9h0aqhi4"; depends=[AnnotationDbi]; }; - LAPOINTE_db = derive2 { name="LAPOINTE.db"; version="3.2.2"; sha256="1pqgdgzqjfw96n8d8fwql6jg6gp407xca29jwmcyv4g59v1bx81d"; depends=[AnnotationDbi org_Hs_eg_db]; }; + IlluminaHumanMethylationEPICanno_ilm10b2_hg19 = derive2 { name="IlluminaHumanMethylationEPICanno.ilm10b2.hg19"; version="0.3.0"; sha256="1nz15bva44pag3c4l1z7d01r0jfgb9cirn3zard5i258v1ahg4q6"; depends=[minfi]; }; + IlluminaHumanMethylationEPICmanifest = derive2 { name="IlluminaHumanMethylationEPICmanifest"; version="0.3.0"; sha256="0alhjda5g186z8b1nsmnpfswrlj7prdz8mkwx60wkkl6hkcnk6p3"; depends=[minfi]; }; + JazaeriMetaData_db = derive2 { name="JazaeriMetaData.db"; version="3.2.3"; sha256="04lvcmm4ybxkfwgbiwcnpyj6kpbd0gd7jz6ijlbbvv6zdgdmvykb"; depends=[AnnotationDbi org_Hs_eg_db]; }; + KEGG_db = derive2 { name="KEGG.db"; version="3.2.3"; sha256="0qv9in1nmnqcbjxh0y45x33xyw9zdp4jf5hmlvcsh1pclcq4dsh2"; depends=[AnnotationDbi]; }; + LAPOINTE_db = derive2 { name="LAPOINTE.db"; version="3.2.3"; sha256="0960gy5p4ybs5zs6251cgc3nk5a9gsh1nh23gkbkr3gc8jddinfm"; depends=[AnnotationDbi org_Hs_eg_db]; }; LowMACAAnnotation = derive2 { name="LowMACAAnnotation"; version="0.99.3"; sha256="0ri301ci54s8wwkah1jccy5h44xg8yjk08j5b15qmdsm25hli4wm"; depends=[]; }; - MafDb_ALL_wgs_phase1_release_v3_20101123 = derive2 { name="MafDb.ALL.wgs.phase1.release.v3.20101123"; version="3.2.0"; sha256="1zd2hpp9f4ilajsx6xpimgiqzkxhc3lyhanr4n4gv0d3cdkxa1mb"; depends=[AnnotationDbi Biobase Biostrings GenomicRanges IRanges Rsamtools RSQLite VariantAnnotation VariantFiltering]; }; - MafDb_ALL_wgs_phase3_release_v5a_20130502 = derive2 { name="MafDb.ALL.wgs.phase3.release.v5a.20130502"; version="3.2.0"; sha256="06bdbrjqh0gc7sypp94v0bwq4cfbz8vnq6z3g36w8906ziss6a8j"; depends=[AnnotationDbi Biobase Biostrings GenomicRanges IRanges Rsamtools RSQLite VariantAnnotation VariantFiltering]; }; - MafDb_ALL_wgs_phase3_release_v5b_20130502 = derive2 { name="MafDb.ALL.wgs.phase3.release.v5b.20130502"; version="3.2.0"; sha256="1cc2aphc98nip100jfxy39clknrnpn5z838f1b8fb542whypikn7"; depends=[AnnotationDbi Biobase Biostrings GenomicRanges IRanges Rsamtools RSQLite VariantAnnotation VariantFiltering]; }; - MafDb_ESP6500SI_V2_SSA137 = derive2 { name="MafDb.ESP6500SI.V2.SSA137"; version="3.2.0"; sha256="1dykp9bz1srb144yimkyagfhigr5dzg8ybxa5fsn3sr99p31va69"; depends=[AnnotationDbi Biobase Biostrings GenomicRanges IRanges Rsamtools RSQLite VariantAnnotation VariantFiltering]; }; - MafDb_ExAC_r0_3_sites = derive2 { name="MafDb.ExAC.r0.3.sites"; version="3.2.0"; sha256="1qb3zwlkqaw2p5faajjahpp6g8wp02gd733kw9kim9xddjvjba14"; depends=[AnnotationDbi Biobase Biostrings GenomicRanges IRanges Rsamtools RSQLite VariantAnnotation VariantFiltering]; }; - MeSH_AOR_db = derive2 { name="MeSH.AOR.db"; version="1.5.0"; sha256="07mcj2lrrgnazzk4kgnzriyrny6mv1n0bpyi2s4vkv58xxm2n04k"; depends=[MeSHDbi]; }; - MeSH_Aca_eg_db = derive2 { name="MeSH.Aca.eg.db"; version="1.5.0"; sha256="0jp07lnlxmb05cs0j3zr4spnlnqbh846j08ic7nhcl1bgzh652dp"; depends=[MeSHDbi]; }; - MeSH_Aga_PEST_eg_db = derive2 { name="MeSH.Aga.PEST.eg.db"; version="1.5.0"; sha256="0rf2sr7sv2vpszi5wssznx25crx1ad4nbjj3w9whvhn2bzprksw3"; depends=[MeSHDbi]; }; - MeSH_Ame_eg_db = derive2 { name="MeSH.Ame.eg.db"; version="1.5.0"; sha256="0ggh4r8vrah8ln14hhvn3rxcv8xxjv8g72pw4l6rrxcwqbicy2pq"; depends=[MeSHDbi]; }; - MeSH_Aml_eg_db = derive2 { name="MeSH.Aml.eg.db"; version="1.5.0"; sha256="1x6rap57yzshli4vx4ljv3n8pmrd4xy3lblcpl4nd3319hnl9nfy"; depends=[MeSHDbi]; }; - MeSH_Ana_eg_db = derive2 { name="MeSH.Ana.eg.db"; version="1.5.0"; sha256="0iz8aq9sxy485csm3fib3p5mvsnv81kq5d6a1jsnqqhh629c6pf3"; depends=[MeSHDbi]; }; - MeSH_Ani_FGSC_eg_db = derive2 { name="MeSH.Ani.FGSC.eg.db"; version="1.5.0"; sha256="0dqnnmm668ahychvksbfsk21v7p51ac3qz8n9nff608z8nrry67p"; depends=[MeSHDbi]; }; - MeSH_Ath_eg_db = derive2 { name="MeSH.Ath.eg.db"; version="1.5.0"; sha256="0qka863lgsbyv4xny6h1d9xjgckyvbzw4hrd59ykk5j6bjar3zvq"; depends=[MeSHDbi]; }; - MeSH_Bfl_eg_db = derive2 { name="MeSH.Bfl.eg.db"; version="1.5.0"; sha256="0wbrqgxqzvv7s1ak4axkh5x7wl0wlgl9zds2xm1675w5li40j6dv"; depends=[MeSHDbi]; }; - MeSH_Bsu_168_eg_db = derive2 { name="MeSH.Bsu.168.eg.db"; version="1.5.0"; sha256="0va8mqhxq7r02bjyi2pyr0y4zhl6jn8lq8367qbzs4bfbj7y2w44"; depends=[MeSHDbi]; }; - MeSH_Bsu_TUB10_eg_db = derive2 { name="MeSH.Bsu.TUB10.eg.db"; version="1.5.0"; sha256="1igsl86sgwmxwy4j1igp5a355rff4jm9pia1hv59s9c6nni5xdfc"; depends=[MeSHDbi]; }; - MeSH_Bta_eg_db = derive2 { name="MeSH.Bta.eg.db"; version="1.5.0"; sha256="1v8vmyhdw625s9gl6wfrfbq653mxjhsxayjgm0m9m0h3rkw6nadw"; depends=[MeSHDbi]; }; - MeSH_Cal_SC5314_eg_db = derive2 { name="MeSH.Cal.SC5314.eg.db"; version="1.5.0"; sha256="03lxs5hkbfqw6wdgdsdspblj6a7pwyqny8ypw72rl6gs0m1jha25"; depends=[MeSHDbi]; }; - MeSH_Cbr_eg_db = derive2 { name="MeSH.Cbr.eg.db"; version="1.5.0"; sha256="1jfn1qdx7dzqi5hwgcz02g5sc0wnqmgc1rm0n3d6mapzz286jl3q"; depends=[MeSHDbi]; }; - MeSH_Cel_eg_db = derive2 { name="MeSH.Cel.eg.db"; version="1.5.0"; sha256="171243fbgalpa5fjfqprj8gvg04wrcn1x8l465mzw8jj4y58pc60"; depends=[MeSHDbi]; }; - MeSH_Cfa_eg_db = derive2 { name="MeSH.Cfa.eg.db"; version="1.5.0"; sha256="1gcnrynfnjapwdk13xk2x5g2jphk16ycp04qhwxp2qn53pgrj15k"; depends=[MeSHDbi]; }; - MeSH_Cin_eg_db = derive2 { name="MeSH.Cin.eg.db"; version="1.5.0"; sha256="0fdfslzh69rln2yj8hvb0igg3hmvn58pmkzfg0wpr3cc2y51jjvq"; depends=[MeSHDbi]; }; - MeSH_Cja_eg_db = derive2 { name="MeSH.Cja.eg.db"; version="1.5.0"; sha256="0m1z665crgj2q00bcz9m9gb0i55fca19agfpdd1b3nyiqil5fwqs"; depends=[MeSHDbi]; }; - MeSH_Cpo_eg_db = derive2 { name="MeSH.Cpo.eg.db"; version="1.5.0"; sha256="1xxlvi78mwjgqigrbxg0zas39i6j9c8ih6yh2s1xvmfm9mdg8v0j"; depends=[MeSHDbi]; }; - MeSH_Cre_eg_db = derive2 { name="MeSH.Cre.eg.db"; version="1.5.0"; sha256="0s8w895f3l43v68s5wipggk4lq31cxsvlz7p6rfplj3chqkb4z2c"; depends=[MeSHDbi]; }; - MeSH_Dan_eg_db = derive2 { name="MeSH.Dan.eg.db"; version="1.5.0"; sha256="0ra8hqg6w6w8w5wib4qa3py6bk961v47bmr47c9f5zbmp2n4ghwn"; depends=[MeSHDbi]; }; - MeSH_Dda_3937_eg_db = derive2 { name="MeSH.Dda.3937.eg.db"; version="1.5.0"; sha256="0y1hcpbf3ddby76i19x933l4hz92a6v03k1cpyqipf1x8gdlkm1z"; depends=[MeSHDbi]; }; - MeSH_Ddi_AX4_eg_db = derive2 { name="MeSH.Ddi.AX4.eg.db"; version="1.5.0"; sha256="1dlnxpp0ad5n0k43sy3jaz8ak9qxrmy57zg5bsxp65c04fgr3j9j"; depends=[MeSHDbi]; }; - MeSH_Der_eg_db = derive2 { name="MeSH.Der.eg.db"; version="1.5.0"; sha256="0zllh66mbh20z402wv31993g06q4ap41f5fc7karkf17fbxz7nsl"; depends=[MeSHDbi]; }; - MeSH_Dgr_eg_db = derive2 { name="MeSH.Dgr.eg.db"; version="1.5.0"; sha256="1lhqac659i3hys4r90r5y9k5m48r6ai2f3kir5v2046b8y5gbdx9"; depends=[MeSHDbi]; }; - MeSH_Dme_eg_db = derive2 { name="MeSH.Dme.eg.db"; version="1.5.0"; sha256="03fq4zj3d8ag5k05g9jvfll99dir9cnl04lkaw9n3h0q28hrsjg2"; depends=[MeSHDbi]; }; - MeSH_Dmo_eg_db = derive2 { name="MeSH.Dmo.eg.db"; version="1.5.0"; sha256="0zh1awvf8v4axzqhazf8rqb8srp8sas3raiackw2z1niq89l0jw9"; depends=[MeSHDbi]; }; - MeSH_Dpe_eg_db = derive2 { name="MeSH.Dpe.eg.db"; version="1.5.0"; sha256="0myhby94b2i2sp4fzm5wa7j102admbp3lkdzyjwwbq6sw7hznb47"; depends=[MeSHDbi]; }; - MeSH_Dre_eg_db = derive2 { name="MeSH.Dre.eg.db"; version="1.5.0"; sha256="1bxrfqh2pwkxdqs9vzvcwh5k1whik45bsmnbkr5c9yaryz8g801y"; depends=[MeSHDbi]; }; - MeSH_Dse_eg_db = derive2 { name="MeSH.Dse.eg.db"; version="1.5.0"; sha256="0qp2zqm2z998sx3gzkam0h5f38bblkvwb0jsvxckdr1n7j0ld3bz"; depends=[MeSHDbi]; }; - MeSH_Dsi_eg_db = derive2 { name="MeSH.Dsi.eg.db"; version="1.5.0"; sha256="0l675bqgmk455jx2iwzc3rn3v3a125grc0w6g1j25agbar8fznln"; depends=[MeSHDbi]; }; - MeSH_Dvi_eg_db = derive2 { name="MeSH.Dvi.eg.db"; version="1.5.0"; sha256="190rfd5y5rrjphsc0dhnsms4bx2dkzs8m2ljv5rj1ygwhx78smz6"; depends=[MeSHDbi]; }; - MeSH_Dya_eg_db = derive2 { name="MeSH.Dya.eg.db"; version="1.5.0"; sha256="1ci0s1hklzaxc5h0wbfx21llqawi5n9bl0fddpiwwqma8mpy07k5"; depends=[MeSHDbi]; }; + LymphoSeqDB = derive2 { name="LymphoSeqDB"; version="0.99.2"; sha256="1cdyn2imjh4zr23szndc4vwyiacxs1jsp14gil2dyq9aifa25qr7"; depends=[]; }; + MafDb_1Kgenomes_phase1_hs37d5 = derive2 { name="MafDb.1Kgenomes.phase1.hs37d5"; version="3.3.0"; sha256="0axbmmcqsy8hbxxn0q3q14whdjy8zvmd0xbqdlcb08nhs8j1jji0"; depends=[AnnotationDbi Biobase Biostrings GenomicRanges IRanges Rsamtools RSQLite VariantAnnotation VariantFiltering]; }; + MafDb_1Kgenomes_phase3_hs37d5 = derive2 { name="MafDb.1Kgenomes.phase3.hs37d5"; version="3.3.0"; sha256="1g1hi6fvz87im8xafk2jmkms463i2jakjjq8xdmb4zhk1ij6ck2f"; depends=[AnnotationDbi Biobase Biostrings GenomicRanges IRanges Rsamtools RSQLite VariantAnnotation VariantFiltering]; }; + MafDb_ALL_wgs_phase1_release_v3_20101123 = derive2 { name="MafDb.ALL.wgs.phase1.release.v3.20101123"; version="3.3.0"; sha256="1aj9w8kaymm9jmjani1nyw75akxprvm77rjddmrlkfdpfj4mnadn"; depends=[AnnotationDbi Biobase Biostrings GenomicRanges IRanges Rsamtools RSQLite VariantAnnotation VariantFiltering]; }; + MafDb_ALL_wgs_phase3_release_v5b_20130502 = derive2 { name="MafDb.ALL.wgs.phase3.release.v5b.20130502"; version="3.3.0"; sha256="0rjsj5423nksnk3dn8zyxa7j62ihni1ni9m7hr0fqcm4jixqbjmp"; depends=[AnnotationDbi Biobase Biostrings GenomicRanges IRanges Rsamtools RSQLite VariantAnnotation VariantFiltering]; }; + MafDb_ESP6500SI_V2_SSA137 = derive2 { name="MafDb.ESP6500SI.V2.SSA137"; version="3.3.0"; sha256="1yicrqh40pjgg4g7dm7xf26dz3hwp01n25k3m46ds7dyg20g6vln"; depends=[AnnotationDbi Biobase Biostrings GenomicRanges IRanges Rsamtools RSQLite VariantAnnotation VariantFiltering]; }; + MafDb_ExAC_r0_3_1_nonTCGA_snvs_hs37d5 = derive2 { name="MafDb.ExAC.r0.3.1.nonTCGA.snvs.hs37d5"; version="3.3.0"; sha256="01l4ixcgpwi8prj91xag2r93dayprg6zi2w2pp0bhsw3cs8v9cfi"; depends=[BSgenome GenomicRanges IRanges VariantFiltering]; }; + MafDb_ExAC_r0_3_1_snvs_hs37d5 = derive2 { name="MafDb.ExAC.r0.3.1.snvs.hs37d5"; version="3.3.0"; sha256="0csnsa6s08yc1mgi32h7pbmdn4h9wja96l2zdfvfwapmh3wmzm1a"; depends=[BSgenome GenomicRanges IRanges VariantFiltering]; }; + MafDb_ExAC_r0_3_sites = derive2 { name="MafDb.ExAC.r0.3.sites"; version="3.3.0"; sha256="07a859ipwbk1il6fvb7mlpvc05r7gkglchx2qlc3xlpl8i9fb9qr"; depends=[AnnotationDbi Biobase Biostrings GenomicRanges IRanges Rsamtools RSQLite SummarizedExperiment VariantAnnotation VariantFiltering]; }; + MeSH_AOR_db = derive2 { name="MeSH.AOR.db"; version="1.6.0"; sha256="0zia94rqj9kjf9cibppkhdb7qx086hkx6hd3dcn85x27di4ic12g"; depends=[MeSHDbi]; }; + MeSH_Aca_eg_db = derive2 { name="MeSH.Aca.eg.db"; version="1.6.0"; sha256="1lq2a7l855xb482x97p4mwvgzbizjb6m0avswhm9snvipbkfb42q"; depends=[MeSHDbi]; }; + MeSH_Aga_PEST_eg_db = derive2 { name="MeSH.Aga.PEST.eg.db"; version="1.6.0"; sha256="19nv4mpx15qgiixcvwlbq8v5plzpkzkikgpc5mp9mzf286nnh7vz"; depends=[MeSHDbi]; }; + MeSH_Ame_eg_db = derive2 { name="MeSH.Ame.eg.db"; version="1.6.0"; sha256="05xfrgyvyljh9jh38f8fj4x2l0i7h55yn08gd0r4riiibsgrfwvz"; depends=[MeSHDbi]; }; + MeSH_Aml_eg_db = derive2 { name="MeSH.Aml.eg.db"; version="1.6.0"; sha256="1fnz04qz5f8v20sr0zp9wd2dbqapww0lfb1c8lv099m5sanmwz35"; depends=[MeSHDbi]; }; + MeSH_Ana_eg_db = derive2 { name="MeSH.Ana.eg.db"; version="1.6.0"; sha256="0jbsz97wrbj70pypj9xgvhwy4cgjapirnhsdiix6b1l0lpqahvzq"; depends=[MeSHDbi]; }; + MeSH_Ani_FGSC_eg_db = derive2 { name="MeSH.Ani.FGSC.eg.db"; version="1.6.0"; sha256="13gdrcn4xmndly7ag15b7qnwl86aclqgi63fn682y12hdbd0r4d9"; depends=[MeSHDbi]; }; + MeSH_Ath_eg_db = derive2 { name="MeSH.Ath.eg.db"; version="1.6.0"; sha256="1k7faw7vspx5fg5qqnlq29r7i5b01fv2zhin2b3r497g25pg2yqf"; depends=[MeSHDbi]; }; + MeSH_Bfl_eg_db = derive2 { name="MeSH.Bfl.eg.db"; version="1.6.0"; sha256="1fs858m8hsipawrjm75nqsrcmkka5ynqxk0cw2vr8g7q9a3ash9s"; depends=[MeSHDbi]; }; + MeSH_Bsu_168_eg_db = derive2 { name="MeSH.Bsu.168.eg.db"; version="1.6.0"; sha256="1pwg5p82jsqmjl0rf3vv6nk9f4k2l5smn2ksx4d1q8dbnrl6dxdi"; depends=[MeSHDbi]; }; + MeSH_Bsu_TUB10_eg_db = derive2 { name="MeSH.Bsu.TUB10.eg.db"; version="1.6.0"; sha256="1s3i1g5smbcal6sfdraqaybi6cmw3aagjr90dbgbw0dzf1i3vjf5"; depends=[MeSHDbi]; }; + MeSH_Bta_eg_db = derive2 { name="MeSH.Bta.eg.db"; version="1.6.0"; sha256="198l8ksvfnzz8cdzx0k6297zvms7m4a6v54c1j96p1brqyx3asc7"; depends=[MeSHDbi]; }; + MeSH_Cal_SC5314_eg_db = derive2 { name="MeSH.Cal.SC5314.eg.db"; version="1.6.0"; sha256="1lcsfax1w6jpyj6k33l4l4iw7n87gm88pljamn584622i7xgz65q"; depends=[MeSHDbi]; }; + MeSH_Cbr_eg_db = derive2 { name="MeSH.Cbr.eg.db"; version="1.6.0"; sha256="1m1wf195nipvy4ha3amdl1l8shya7308s087ixy8sgklzdfnrka7"; depends=[MeSHDbi]; }; + MeSH_Cel_eg_db = derive2 { name="MeSH.Cel.eg.db"; version="1.6.0"; sha256="1192anip5ib95cai84q0lxcj4q9j05m7p91zxnyqgwy8hda13fc4"; depends=[MeSHDbi]; }; + MeSH_Cfa_eg_db = derive2 { name="MeSH.Cfa.eg.db"; version="1.6.0"; sha256="1qis2wxmilv2yy6gi5318md57ybcl1jwd1ap2y6qpa8aa92jdmpn"; depends=[MeSHDbi]; }; + MeSH_Cin_eg_db = derive2 { name="MeSH.Cin.eg.db"; version="1.6.0"; sha256="1gs2dvrpdkis46m72sw7rxj5x3wsbyvxyn81npw6af4zvsp1150n"; depends=[MeSHDbi]; }; + MeSH_Cja_eg_db = derive2 { name="MeSH.Cja.eg.db"; version="1.6.0"; sha256="13zsdh0x572p06drb6jhmmr2flcsmdwndhpb844rwc9ycw5fxka5"; depends=[MeSHDbi]; }; + MeSH_Cpo_eg_db = derive2 { name="MeSH.Cpo.eg.db"; version="1.6.0"; sha256="0321fb35vmajhpp5fj8g0ha28psbbbk81076zvpx84kf4pbmy4z7"; depends=[MeSHDbi]; }; + MeSH_Cre_eg_db = derive2 { name="MeSH.Cre.eg.db"; version="1.6.0"; sha256="1k225nkxnlkrcjg44xb7f7f9h52hjy6b54zfmphkp8r06hqmmynz"; depends=[MeSHDbi]; }; + MeSH_Dan_eg_db = derive2 { name="MeSH.Dan.eg.db"; version="1.6.0"; sha256="0z67vcgk9mbjfab5hwd8n2dga02v01b62h51wbajanf5zv8yclb3"; depends=[MeSHDbi]; }; + MeSH_Dda_3937_eg_db = derive2 { name="MeSH.Dda.3937.eg.db"; version="1.6.0"; sha256="1xncfml5h36g5ldgvmrvdq1w3mb9b2d3zsw4935ybydw0239pm8f"; depends=[MeSHDbi]; }; + MeSH_Ddi_AX4_eg_db = derive2 { name="MeSH.Ddi.AX4.eg.db"; version="1.6.0"; sha256="0alw1az6iwk7xlbji5ibd22kp2hkj4s7cgssvkp7m880bbimfw49"; depends=[MeSHDbi]; }; + MeSH_Der_eg_db = derive2 { name="MeSH.Der.eg.db"; version="1.6.0"; sha256="02dhsprjfg1lb5kiwmflxsd6sdapkp5j9d42c59mgq5i8wp5fgxb"; depends=[MeSHDbi]; }; + MeSH_Dgr_eg_db = derive2 { name="MeSH.Dgr.eg.db"; version="1.6.0"; sha256="036n8rkn51fg1a5n4drx9gxqc6px895f7iqblbkjfyxxg4ljgxvq"; depends=[MeSHDbi]; }; + MeSH_Dme_eg_db = derive2 { name="MeSH.Dme.eg.db"; version="1.6.0"; sha256="14v6nm8ky41aq9vih24nyb2yvzx4g14zazc6f2g7ik8g027nvwdl"; depends=[MeSHDbi]; }; + MeSH_Dmo_eg_db = derive2 { name="MeSH.Dmo.eg.db"; version="1.6.0"; sha256="0zr4i89rk4jz20yrh8ag8mb5kdhcf4psb1pplr62idj1h38yn645"; depends=[MeSHDbi]; }; + MeSH_Dpe_eg_db = derive2 { name="MeSH.Dpe.eg.db"; version="1.6.0"; sha256="0yigpsc3j8d0fp390qyxlfm0lgqbbz0q0661nkpchqajfdd1hy7k"; depends=[MeSHDbi]; }; + MeSH_Dre_eg_db = derive2 { name="MeSH.Dre.eg.db"; version="1.6.0"; sha256="1rgc176cgd1ciwkiwma6q8vj53fa1an2k7ivqsxiwx8dpiznwp3z"; depends=[MeSHDbi]; }; + MeSH_Dse_eg_db = derive2 { name="MeSH.Dse.eg.db"; version="1.6.0"; sha256="12hznsnlpbgmwabli009vr57cqnk5w35r31zsvjfcs0qkmk87dq7"; depends=[MeSHDbi]; }; + MeSH_Dsi_eg_db = derive2 { name="MeSH.Dsi.eg.db"; version="1.6.0"; sha256="0khbqcxj2hvmiknb1ycryv91i2iw028lhhzfwma18spwmqybn8s0"; depends=[MeSHDbi]; }; + MeSH_Dvi_eg_db = derive2 { name="MeSH.Dvi.eg.db"; version="1.6.0"; sha256="0v5pkbzjyrvx8say1nx0aqak8hqpwl4g9hr57nnvbmj6akjqfg5f"; depends=[MeSHDbi]; }; + MeSH_Dya_eg_db = derive2 { name="MeSH.Dya.eg.db"; version="1.6.0"; sha256="0dfm8cdl5s83iia8jn4830vxc7lh9l8yf25pd4851zwdz4m34gj7"; depends=[MeSHDbi]; }; MeSH_Eco_55989_eg_db = derive2 { name="MeSH.Eco.55989.eg.db"; version="1.4.0"; sha256="1r9q1vk8p9ah28k6gc2dlglwyi1i0y5zaxmzcrkxyw04pfzn41f7"; depends=[MeSHDbi]; }; MeSH_Eco_CFT073_eg_db = derive2 { name="MeSH.Eco.CFT073.eg.db"; version="1.4.0"; sha256="0r7hlxd5k9n9shq3wj5ldqj00apvx4bv8h38v2i4adv29s5x7973"; depends=[MeSHDbi]; }; - MeSH_Eco_ED1a_eg_db = derive2 { name="MeSH.Eco.ED1a.eg.db"; version="1.5.0"; sha256="0qaciqrisxq7nhib661ha3ixwl2gpc3040dxiw7n4hy87bxa17g4"; depends=[MeSHDbi]; }; + MeSH_Eco_ED1a_eg_db = derive2 { name="MeSH.Eco.ED1a.eg.db"; version="1.6.0"; sha256="0wgc2c0ihn3qg2sbh3xs2x54igsf4w1pl71c9vcpx65n71xnzwwg"; depends=[MeSHDbi]; }; MeSH_Eco_HS_eg_db = derive2 { name="MeSH.Eco.HS.eg.db"; version="1.4.0"; sha256="0gyrfjyp3k5jbcg92qzz4fjpmk9m4i0v7q2yvja73sni6976g9ca"; depends=[MeSHDbi]; }; MeSH_Eco_IAI1_eg_db = derive2 { name="MeSH.Eco.IAI1.eg.db"; version="1.4.0"; sha256="16mxh182ij25qgfk14dzzpvaac7fqcnzx58j5m6hfrz3wvgh9jrq"; depends=[MeSHDbi]; }; - MeSH_Eco_IAI39_eg_db = derive2 { name="MeSH.Eco.IAI39.eg.db"; version="1.5.0"; sha256="0cgyb709k0894m5f8gzsfx0215mf058dwmpi41rm4xbv98ww9x2p"; depends=[MeSHDbi]; }; + MeSH_Eco_IAI39_eg_db = derive2 { name="MeSH.Eco.IAI39.eg.db"; version="1.6.0"; sha256="18m2grrbjp73ymb25iv3krb495b7y0rqy7bgq3ramig119hxcmqp"; depends=[MeSHDbi]; }; MeSH_Eco_K12_DH10B_eg_db = derive2 { name="MeSH.Eco.K12.DH10B.eg.db"; version="1.4.0"; sha256="00y5qlqrsjl941iaqln4m5jvskc2a6kildys881ml92f14cmgs07"; depends=[MeSHDbi]; }; - MeSH_Eco_K12_MG1655_eg_db = derive2 { name="MeSH.Eco.K12.MG1655.eg.db"; version="1.5.0"; sha256="1az1si0pkd9jngddvd5b37k0h5y5p2mkis9z1y6w9g3kp2z5b3wy"; depends=[MeSHDbi]; }; + MeSH_Eco_K12_MG1655_eg_db = derive2 { name="MeSH.Eco.K12.MG1655.eg.db"; version="1.6.0"; sha256="1778f3bcll6zd4jing0nm8iydsyhbx68d78wh1dj68x9gky1rwd2"; depends=[MeSHDbi]; }; MeSH_Eco_O127_H6_E2348_69_eg_db = derive2 { name="MeSH.Eco.O127.H6.E2348.69.eg.db"; version="1.4.0"; sha256="1as23bz0yylgf24sy84xm46bblvkacp84kjr2g8c9if1vll2x2dg"; depends=[MeSHDbi]; }; MeSH_Eco_O157_H7_EDL933_eg_db = derive2 { name="MeSH.Eco.O157.H7.EDL933.eg.db"; version="1.4.0"; sha256="0qnnp2a2v3nv1br1lg2km0p96q1knwa1fx95cg4wp38nc5g0jcc9"; depends=[MeSHDbi]; }; - MeSH_Eco_O157_H7_Sakai_eg_db = derive2 { name="MeSH.Eco.O157.H7.Sakai.eg.db"; version="1.5.0"; sha256="12x6fp6h45ixxisib2x16rvx5xv57xfh9pcrwpprrj8sy2pv2gbb"; depends=[MeSHDbi]; }; + MeSH_Eco_O157_H7_Sakai_eg_db = derive2 { name="MeSH.Eco.O157.H7.Sakai.eg.db"; version="1.6.0"; sha256="01lbrqjdyf8awzhypqmm5wja1ql08i4f8a6c9w5h9g4sziq24ck5"; depends=[MeSHDbi]; }; MeSH_Eco_S88_eg_db = derive2 { name="MeSH.Eco.S88.eg.db"; version="1.4.0"; sha256="15k44ricv7vi7sbw5s2nckm6jwbfzrrjp8ck06ydjp9q70hfzmhy"; depends=[MeSHDbi]; }; - MeSH_Eco_UMN026_eg_db = derive2 { name="MeSH.Eco.UMN026.eg.db"; version="1.5.0"; sha256="1a6f5xz5zc609k27fivaav5dg9kmz9wyrmjm4cz194ac36zj57q7"; depends=[MeSHDbi]; }; - MeSH_Eqc_eg_db = derive2 { name="MeSH.Eqc.eg.db"; version="1.5.0"; sha256="02lp2sdgbz8a50l0s8mfw7halgdg2sc00sxc6k2dr7his3clhnby"; depends=[MeSHDbi]; }; - MeSH_Gga_eg_db = derive2 { name="MeSH.Gga.eg.db"; version="1.5.0"; sha256="1i8vlkis021cw5ym0f74rgpcml8x8wcsjvaynpadpvfkyra49946"; depends=[MeSHDbi]; }; - MeSH_Gma_eg_db = derive2 { name="MeSH.Gma.eg.db"; version="1.5.0"; sha256="1awwmbmrgi5jpsa6xys4aqd8c4vjcfy0d1fbs918v8dha9ksy202"; depends=[MeSHDbi]; }; - MeSH_Hsa_eg_db = derive2 { name="MeSH.Hsa.eg.db"; version="1.5.0"; sha256="13cpchm3lyc259r739k1kcljmjpr31l7wp9zgiliyqc1l7hw279k"; depends=[MeSHDbi]; }; - MeSH_Laf_eg_db = derive2 { name="MeSH.Laf.eg.db"; version="1.5.0"; sha256="09sbzwqh1bi0bbdxbin107nbqw9vch09vsr2d2pq3z5q3bdz52sh"; depends=[MeSHDbi]; }; - MeSH_Lma_eg_db = derive2 { name="MeSH.Lma.eg.db"; version="1.5.0"; sha256="0f71ywvjsc2ly8l7lrxm6nrkrnm2vlkbmnm0bi22yqwvr5q5gm4q"; depends=[MeSHDbi]; }; - MeSH_Mdo_eg_db = derive2 { name="MeSH.Mdo.eg.db"; version="1.5.0"; sha256="1l3yfi4vx3yzw8i85ymy0fj1k1q66gyv4fjl5mbq5nlz8g6r19y0"; depends=[MeSHDbi]; }; - MeSH_Mes_eg_db = derive2 { name="MeSH.Mes.eg.db"; version="1.5.0"; sha256="01mr5crin0ak57gdm1p36m3066a2x2m81g74minf2ijghpnb67q5"; depends=[MeSHDbi]; }; - MeSH_Mga_eg_db = derive2 { name="MeSH.Mga.eg.db"; version="1.5.0"; sha256="0icm9jnyi46bp5knsxmb1fv2fghimrmwskq9p5yzgm1jhr43qgjd"; depends=[MeSHDbi]; }; - MeSH_Miy_eg_db = derive2 { name="MeSH.Miy.eg.db"; version="1.5.0"; sha256="0d3y2837n0k74mn2bv75x3f3bm1xlzfh728221vfhyj9xzbs6131"; depends=[MeSHDbi]; }; - MeSH_Mml_eg_db = derive2 { name="MeSH.Mml.eg.db"; version="1.5.0"; sha256="04ba79mky8m6wiiwi0fkcz9c6gfk1c81pypz77258qwbi98p6y32"; depends=[MeSHDbi]; }; - MeSH_Mmu_eg_db = derive2 { name="MeSH.Mmu.eg.db"; version="1.5.0"; sha256="0ligmwg9f6qs99ngnk81imlp6n48cw5jjnqklaw8dcy8ph016vhf"; depends=[MeSHDbi]; }; - MeSH_Mtr_eg_db = derive2 { name="MeSH.Mtr.eg.db"; version="1.5.0"; sha256="187bw5svsbssyjm3rdy9lh5wp5r0wkspxska80hqf26swbjl4ymm"; depends=[MeSHDbi]; }; - MeSH_Nle_eg_db = derive2 { name="MeSH.Nle.eg.db"; version="1.5.0"; sha256="1gairkwy29jg949i270ndzsa6f9zwcs7i61lj6w26piz6hcjgv28"; depends=[MeSHDbi]; }; - MeSH_Oan_eg_db = derive2 { name="MeSH.Oan.eg.db"; version="1.5.0"; sha256="1wk2mfd1qg1ycfqsd0v5zp470cb49vczsarar8wfkly5mvl561m4"; depends=[MeSHDbi]; }; - MeSH_Ocu_eg_db = derive2 { name="MeSH.Ocu.eg.db"; version="1.5.0"; sha256="12xkw4s3ycr9fpz2q36rcg3mhvzplmg8fmigcigd5vg0g5029wi8"; depends=[MeSHDbi]; }; - MeSH_Oni_eg_db = derive2 { name="MeSH.Oni.eg.db"; version="1.5.0"; sha256="0jwrkhdfykm71cn1smzzp5wjph04v687lvk0hyazd1hb5wwhwkyi"; depends=[MeSHDbi]; }; - MeSH_Osa_eg_db = derive2 { name="MeSH.Osa.eg.db"; version="1.5.0"; sha256="105qz16b2l2sbr1r8if3bkc6w0cll7lhg67j09l8a9y9f4ddwa65"; depends=[MeSHDbi]; }; - MeSH_PCR_db = derive2 { name="MeSH.PCR.db"; version="1.5.0"; sha256="03hrggzl4j29k9fvvhzhbil506k02lmnpl3rm63m3x35416g7wsj"; depends=[MeSHDbi]; }; - MeSH_Pab_eg_db = derive2 { name="MeSH.Pab.eg.db"; version="1.5.0"; sha256="0kd4cz233y4kld8gb3qhnv5bjm9jpfngkc5d6y4bk91jkq1d4g3a"; depends=[MeSHDbi]; }; - MeSH_Pae_PAO1_eg_db = derive2 { name="MeSH.Pae.PAO1.eg.db"; version="1.5.0"; sha256="0cm5ja8l1mkvzpv68gg4aimy68kxzpppps50iwhxc191h2dxkl4r"; depends=[MeSHDbi]; }; - MeSH_Pfa_3D7_eg_db = derive2 { name="MeSH.Pfa.3D7.eg.db"; version="1.5.0"; sha256="1l793h8x3bhm8nydxf517gi8b9paf0plw6i3kmi84gwczvywffqq"; depends=[MeSHDbi]; }; - MeSH_Pto_eg_db = derive2 { name="MeSH.Pto.eg.db"; version="1.5.0"; sha256="1g131cjhlxjppvrjdcl1rwz8856f110a467lyp1kk0pvd2d0xhvz"; depends=[MeSHDbi]; }; - MeSH_Ptr_eg_db = derive2 { name="MeSH.Ptr.eg.db"; version="1.5.0"; sha256="0z7ypnmi68spzr4dv98lswj5wna0rwnwvmbw1g6ihi25vd26cd37"; depends=[MeSHDbi]; }; - MeSH_Rno_eg_db = derive2 { name="MeSH.Rno.eg.db"; version="1.5.0"; sha256="1hzwrc6l41psr1f3zjm71b87rf5bjzwskkanfv1rx87ynq1h2m81"; depends=[MeSHDbi]; }; + MeSH_Eco_UMN026_eg_db = derive2 { name="MeSH.Eco.UMN026.eg.db"; version="1.6.0"; sha256="0j9jrfi1fin7siaqn3q06s1aqh84f2x15sr5vkd28wzxxiv12c58"; depends=[MeSHDbi]; }; + MeSH_Eqc_eg_db = derive2 { name="MeSH.Eqc.eg.db"; version="1.6.0"; sha256="1ka55k5g7h8rzy6qab4q06k5h1mn5ryhhp28hvbb393yhslavgya"; depends=[MeSHDbi]; }; + MeSH_Gga_eg_db = derive2 { name="MeSH.Gga.eg.db"; version="1.6.0"; sha256="12fwr628gn4mmp876j9lli637p1452hwqm8sa383jyf3hvj5a0c2"; depends=[MeSHDbi]; }; + MeSH_Gma_eg_db = derive2 { name="MeSH.Gma.eg.db"; version="1.6.0"; sha256="1yznkpsdl9y560sh66q36ks5h1k0qzkc6crgrwfalpq6g4ik353w"; depends=[MeSHDbi]; }; + MeSH_Hsa_eg_db = derive2 { name="MeSH.Hsa.eg.db"; version="1.6.0"; sha256="0nxk5s2gqa2gswhzmg8isxsraf06plcwhwj8k6s1hvr2lhiq4dmd"; depends=[MeSHDbi]; }; + MeSH_Laf_eg_db = derive2 { name="MeSH.Laf.eg.db"; version="1.6.0"; sha256="1dqn7arsrrmwxznkal10cpzz2409i28b0n2jivkxnyfbkhvfpxrn"; depends=[MeSHDbi]; }; + MeSH_Lma_eg_db = derive2 { name="MeSH.Lma.eg.db"; version="1.6.0"; sha256="1xn14fwbs2g60b5v6jagq0yjlywziv9ds7djz9pjaagsxpk9clip"; depends=[MeSHDbi]; }; + MeSH_Mdo_eg_db = derive2 { name="MeSH.Mdo.eg.db"; version="1.6.0"; sha256="033q5j9q6nrkb8fingqhccg1qmka1j518pppz7lhgbjzskvlqkmj"; depends=[MeSHDbi]; }; + MeSH_Mes_eg_db = derive2 { name="MeSH.Mes.eg.db"; version="1.6.0"; sha256="18qypw8l98gk71lxkffvip00qqn1kdhr4k3bgmv9r9j3k00imdf2"; depends=[MeSHDbi]; }; + MeSH_Mga_eg_db = derive2 { name="MeSH.Mga.eg.db"; version="1.6.0"; sha256="02wx25mh7967ymqkapj4k4qh0f0xfxqkklmz8xyn1pkvk0mr1zr5"; depends=[MeSHDbi]; }; + MeSH_Miy_eg_db = derive2 { name="MeSH.Miy.eg.db"; version="1.6.0"; sha256="0w9m7pbayp967pcx34f7a1snk72ww093w445gf5maagifzlffwak"; depends=[MeSHDbi]; }; + MeSH_Mml_eg_db = derive2 { name="MeSH.Mml.eg.db"; version="1.6.0"; sha256="1s8vmdqnydla1psnbz0n1rrm9w987jy8j04a4av2cr4q5lciv551"; depends=[MeSHDbi]; }; + MeSH_Mmu_eg_db = derive2 { name="MeSH.Mmu.eg.db"; version="1.6.0"; sha256="1wn365f0j5x19mwzycgkr3r5c73vmm509622p5jrmx83ndx2gk94"; depends=[MeSHDbi]; }; + MeSH_Mtr_eg_db = derive2 { name="MeSH.Mtr.eg.db"; version="1.6.0"; sha256="1yinkkinzn9jhxmr1ri0cgcvlb08pvdrgz2fqnafxk55rihh5kg5"; depends=[MeSHDbi]; }; + MeSH_Nle_eg_db = derive2 { name="MeSH.Nle.eg.db"; version="1.6.0"; sha256="1jni4l7ha3asjpg9nvwh17kmbfgkg2gvmp79wjdd7b3mpw1lrm1z"; depends=[MeSHDbi]; }; + MeSH_Oan_eg_db = derive2 { name="MeSH.Oan.eg.db"; version="1.6.0"; sha256="1q46w0v4vni4b1qfx291xs0v5p7rgjsj5pwpfkrvkviy780c5nb9"; depends=[MeSHDbi]; }; + MeSH_Ocu_eg_db = derive2 { name="MeSH.Ocu.eg.db"; version="1.6.0"; sha256="1d8j6sbx4n98yg3fygznrcczwimga96w7ibm1rw4jwg4nxsscizn"; depends=[MeSHDbi]; }; + MeSH_Oni_eg_db = derive2 { name="MeSH.Oni.eg.db"; version="1.6.0"; sha256="1ycg7mh4pa7rb734x1swrfv8r0mxx6gxrlf5dnbwh0imdcxy1b5y"; depends=[MeSHDbi]; }; + MeSH_Osa_eg_db = derive2 { name="MeSH.Osa.eg.db"; version="1.6.0"; sha256="0qvqs3vwbwc0bah348bmmhglvqmj9q7y7kk6zkrwc4337nfrbd2i"; depends=[MeSHDbi]; }; + MeSH_PCR_db = derive2 { name="MeSH.PCR.db"; version="1.6.0"; sha256="0v84n2i71vdf71wj9yk7h89h1hvb5s0ixcdrzyhsi6a041bwq17m"; depends=[MeSHDbi]; }; + MeSH_Pab_eg_db = derive2 { name="MeSH.Pab.eg.db"; version="1.6.0"; sha256="0wrngzyncgsrnl1ai98vaqzs2rmx3sk6ic9xdxkfkf8xb8hgdzjy"; depends=[MeSHDbi]; }; + MeSH_Pae_PAO1_eg_db = derive2 { name="MeSH.Pae.PAO1.eg.db"; version="1.6.0"; sha256="0gvm30z9k7xnb98m3s3wk2f47kvb6h8318cjjhmbpniilfz0cl7g"; depends=[MeSHDbi]; }; + MeSH_Pfa_3D7_eg_db = derive2 { name="MeSH.Pfa.3D7.eg.db"; version="1.6.0"; sha256="137267ibpcr159br33mqrvbnbr98rxc54l2wfl0hhfrgv1k25ccp"; depends=[MeSHDbi]; }; + MeSH_Pto_eg_db = derive2 { name="MeSH.Pto.eg.db"; version="1.6.0"; sha256="01ghjn7fjhiy5pg27wl10kqcdlx5qnggzflrhs4kiyz5k8wa997h"; depends=[MeSHDbi]; }; + MeSH_Ptr_eg_db = derive2 { name="MeSH.Ptr.eg.db"; version="1.6.0"; sha256="08hi6csc8lnfryg6jsjv8z1qz9md6ss6vd0f2szhanrq3j198f0z"; depends=[MeSHDbi]; }; + MeSH_Rno_eg_db = derive2 { name="MeSH.Rno.eg.db"; version="1.6.0"; sha256="0wyrzfj5v1fgr7c61pdg0s3bpna24x50dzzvxv3bls0qzpn096hl"; depends=[MeSHDbi]; }; MeSH_Sau_USA300TCH1516_eg_db = derive2 { name="MeSH.Sau.USA300TCH1516.eg.db"; version="1.4.0"; sha256="109kvsdqvra8x392l82djbd46l8z4hv4z92785ivgdcnchsdjq7p"; depends=[MeSHDbi]; }; - MeSH_Sce_S288c_eg_db = derive2 { name="MeSH.Sce.S288c.eg.db"; version="1.5.0"; sha256="07xvrvhyb0gfq2fx47prkcax46csrb3c2rmvik6lbm17h0ah55x4"; depends=[MeSHDbi]; }; - MeSH_Sco_A32_eg_db = derive2 { name="MeSH.Sco.A32.eg.db"; version="1.5.0"; sha256="0y9afs85yqgyz9701fpwkz3y3wabwks56m1ar3qv8zap6s124fh7"; depends=[MeSHDbi]; }; - MeSH_Sil_eg_db = derive2 { name="MeSH.Sil.eg.db"; version="1.5.0"; sha256="02p6g63rcfnx6db91njw33qrzbr4nra9ddwbwg23jz1vhqlxcv5a"; depends=[MeSHDbi]; }; - MeSH_Spo_972h_eg_db = derive2 { name="MeSH.Spo.972h.eg.db"; version="1.5.0"; sha256="083pg2bc56s52rkv7mvbziq0hjrfndwja32jd31pxdd0cjdv3c3q"; depends=[MeSHDbi]; }; - MeSH_Spu_eg_db = derive2 { name="MeSH.Spu.eg.db"; version="1.5.0"; sha256="1vx6h5pv7hygmgrd5wjdcx576bvr23xfhh4aba3a2jzsjwvg0c9c"; depends=[MeSHDbi]; }; - MeSH_Ssc_eg_db = derive2 { name="MeSH.Ssc.eg.db"; version="1.5.0"; sha256="0c8ijwz4vcwcbf18jsf2z3wxis09h9wrsb9fki5wspgjc486lz9n"; depends=[MeSHDbi]; }; - MeSH_Syn_eg_db = derive2 { name="MeSH.Syn.eg.db"; version="1.5.0"; sha256="03sd73jipya5zqdzqxd6iwnmwmxkqp1mz9hg2bzmfnx3jz3fd5sv"; depends=[MeSHDbi]; }; - MeSH_Tbr_9274_eg_db = derive2 { name="MeSH.Tbr.9274.eg.db"; version="1.5.0"; sha256="05fandy9ig1arahaag0wa09gwz8g4g7bpyns0jchmw88044jvgqs"; depends=[MeSHDbi]; }; - MeSH_Tgo_ME49_eg_db = derive2 { name="MeSH.Tgo.ME49.eg.db"; version="1.5.0"; sha256="03bysvpymrq4n4xa48hksm9vayww6gvjpncnb4q5891azja3drpr"; depends=[MeSHDbi]; }; - MeSH_Tgu_eg_db = derive2 { name="MeSH.Tgu.eg.db"; version="1.5.0"; sha256="0vdxabqli7z2cpdq015jhaddzsxh23k7x0pzc28k8aqbp84czb89"; depends=[MeSHDbi]; }; - MeSH_Vvi_eg_db = derive2 { name="MeSH.Vvi.eg.db"; version="1.5.0"; sha256="0cyn8lflhb8n4fkh7sm0ky9q5n640cwxks22a54x16bvr7bb7f1k"; depends=[MeSHDbi]; }; - MeSH_Xla_eg_db = derive2 { name="MeSH.Xla.eg.db"; version="1.5.0"; sha256="04ihvbp7dlb4fb68snlq0imh3igfhacjsqjnjnwnm1xqgynzn6f6"; depends=[MeSHDbi]; }; - MeSH_Xtr_eg_db = derive2 { name="MeSH.Xtr.eg.db"; version="1.5.0"; sha256="09g6wh866n2xbdy4xmglbk361zwiyywgxwbzndm8yd1xdkzc4myw"; depends=[MeSHDbi]; }; - MeSH_Zma_eg_db = derive2 { name="MeSH.Zma.eg.db"; version="1.5.0"; sha256="00vm12fgmlw79bpkfbc4yrwvf8c6daw3fkxysag6qpjfsjrbdhlg"; depends=[MeSHDbi]; }; - MeSH_db = derive2 { name="MeSH.db"; version="1.5.0"; sha256="1r6iyc1066g7bgil9d0dk5s23bz3bv7idn7k18kbgzm2j3dm9m5g"; depends=[MeSHDbi]; }; - MmAgilentDesign026655_db = derive2 { name="MmAgilentDesign026655.db"; version="3.2.2"; sha256="0zynbckkdxwd90v4k2gv7cmwg0m80jqq5khrzxb73jf7bqn85d3n"; depends=[AnnotationDbi org_Mm_eg_db]; }; + MeSH_Sce_S288c_eg_db = derive2 { name="MeSH.Sce.S288c.eg.db"; version="1.6.0"; sha256="1yxhywyzzak1h13vb7dqnqn016l8zjafq2y5dg7gyja1njwln4sr"; depends=[MeSHDbi]; }; + MeSH_Sco_A32_eg_db = derive2 { name="MeSH.Sco.A32.eg.db"; version="1.6.0"; sha256="137zvl1628jxrrn5n2pv4p9j00nrrqp3bxibxspx760hwrf72qah"; depends=[MeSHDbi]; }; + MeSH_Sil_eg_db = derive2 { name="MeSH.Sil.eg.db"; version="1.6.0"; sha256="0w5r34mkmfllrgqcvnv51yi9d9qpy88w2xnff388qf101n3pr8zd"; depends=[MeSHDbi]; }; + MeSH_Spo_972h_eg_db = derive2 { name="MeSH.Spo.972h.eg.db"; version="1.6.0"; sha256="1kqnms8zq7mspk1bp0in7c6rns0zp08jaji5a0dlryng6awirm2m"; depends=[MeSHDbi]; }; + MeSH_Spu_eg_db = derive2 { name="MeSH.Spu.eg.db"; version="1.6.0"; sha256="0s4dw4hkgw9qkbcwp1pd7kvkjpbsiwnzmbp3x9448ljphi5x3fya"; depends=[MeSHDbi]; }; + MeSH_Ssc_eg_db = derive2 { name="MeSH.Ssc.eg.db"; version="1.6.0"; sha256="1bb8cpb28amrxjdlq24vszg7nzp64crhsvckl9dgsw48mf4ijvlr"; depends=[MeSHDbi]; }; + MeSH_Syn_eg_db = derive2 { name="MeSH.Syn.eg.db"; version="1.6.0"; sha256="0g09xgh4kzrqbaq1aif93bbbazkxggf36jsr4w2m5l7pdmbr9307"; depends=[MeSHDbi]; }; + MeSH_Tbr_9274_eg_db = derive2 { name="MeSH.Tbr.9274.eg.db"; version="1.6.0"; sha256="11zcyybrwappblsbwylzmjvavmvr4p80q9308mgdc5wix9zzj1fy"; depends=[MeSHDbi]; }; + MeSH_Tgo_ME49_eg_db = derive2 { name="MeSH.Tgo.ME49.eg.db"; version="1.6.0"; sha256="022c14njscb5d5146z3y85m2x5jxhq2lanj0nvba5jl0apzjxbb3"; depends=[MeSHDbi]; }; + MeSH_Tgu_eg_db = derive2 { name="MeSH.Tgu.eg.db"; version="1.6.0"; sha256="123zq61pnb1fgm5w81ahdymb3fmyb3bassxqh3bzf592q5457sm0"; depends=[MeSHDbi]; }; + MeSH_Vvi_eg_db = derive2 { name="MeSH.Vvi.eg.db"; version="1.6.0"; sha256="068qigbld4s7jj8001d21vi2k0ddqw74csn8xqhm245h31w8sr1v"; depends=[MeSHDbi]; }; + MeSH_Xla_eg_db = derive2 { name="MeSH.Xla.eg.db"; version="1.6.0"; sha256="0is3w4snymmc8207lbwi8b1qi6kwm2v50k9aqd4x51acs292kyim"; depends=[MeSHDbi]; }; + MeSH_Xtr_eg_db = derive2 { name="MeSH.Xtr.eg.db"; version="1.6.0"; sha256="0qdpw4s0brlmp6dvxdngzmflhvvz85x56mr1z72v3wf4991l41r8"; depends=[MeSHDbi]; }; + MeSH_Zma_eg_db = derive2 { name="MeSH.Zma.eg.db"; version="1.6.0"; sha256="1al8lr6p7g0wpcjjkwl3sxwkgykc06mgmgm54y5bvrgdbqxydz1q"; depends=[MeSHDbi]; }; + MeSH_db = derive2 { name="MeSH.db"; version="1.6.0"; sha256="0k366gpxn6kv9b8by516dqib3d5aclzf8475ci8vqrryaxh3ibsm"; depends=[MeSHDbi]; }; + MmAgilentDesign026655_db = derive2 { name="MmAgilentDesign026655.db"; version="3.2.3"; sha256="00d0yjcb5id7zacx4bzdwy4q6f4qvnnx8ph4d4xz1fmcbspz2qiz"; depends=[AnnotationDbi org_Mm_eg_db]; }; MoExExonProbesetLocation = derive2 { name="MoExExonProbesetLocation"; version="1.15.0"; sha256="0bvj3bji4bwwmxjz4b57n1aqypdibdmry30rfwmlxss1hav96sl7"; depends=[AnnotationDbi]; }; - Mu15v1_db = derive2 { name="Mu15v1.db"; version="3.2.2"; sha256="0k6y8kk3xa0j76l23y8zh31xa6dvwq70b1akwzxlv4nikxdzc1m1"; depends=[AnnotationDbi org_Mm_eg_db]; }; - Mu22v3_db = derive2 { name="Mu22v3.db"; version="3.2.2"; sha256="0576rrlbh5ikik3wqrz83m3ah9dwmqi14fb52wjr31rrbw72qza6"; depends=[AnnotationDbi org_Mm_eg_db]; }; + Mu15v1_db = derive2 { name="Mu15v1.db"; version="3.2.3"; sha256="0qchqkbx6ybijab8qhflxj33kwksfll1d3d3917vydjac9fzw1lz"; depends=[AnnotationDbi org_Mm_eg_db]; }; + Mu22v3_db = derive2 { name="Mu22v3.db"; version="3.2.3"; sha256="016dfa1pz5valjnqh9z73b931wk184vykv9xmz60xp2kj9ccrjzc"; depends=[AnnotationDbi org_Mm_eg_db]; }; Mus_musculus = derive2 { name="Mus.musculus"; version="1.3.1"; sha256="143zdf83gbfqhy8jm9df7gzhw5q3a64jrjrxrzjf0zd76j8s8j6y"; depends=[AnnotationDbi GenomicFeatures GO_db org_Mm_eg_db OrganismDbi TxDb_Mmusculus_UCSC_mm10_knownGene]; }; - Norway981_db = derive2 { name="Norway981.db"; version="3.2.2"; sha256="16wn65n0yydba5mji4ysxwipl263kz2sv6zkj16i8ri5zvnk5343"; depends=[AnnotationDbi org_Hs_eg_db]; }; - OperonHumanV3_db = derive2 { name="OperonHumanV3.db"; version="3.2.2"; sha256="0h7pcpkz9fmqfam00a57g0dkwmmgd9fh54yz12hl23g2nhydswac"; depends=[AnnotationDbi org_Hs_eg_db]; }; + Norway981_db = derive2 { name="Norway981.db"; version="3.2.3"; sha256="04ngc2hilqi9m7933mnm7jcvkxlz68vqqh5b628db575vcxql9b9"; depends=[AnnotationDbi org_Hs_eg_db]; }; + OperonHumanV3_db = derive2 { name="OperonHumanV3.db"; version="3.2.3"; sha256="082gff88cwk2p50q8g9bixggacaclgqcvk6w5dc11h9fkgvd160i"; depends=[AnnotationDbi org_Hs_eg_db]; }; PANTHER_db = derive2 { name="PANTHER.db"; version="1.0.3"; sha256="1vsfhradfhk087vzi0jzkd7qab72g0v0x9s1rr7wblw7wjz48299"; depends=[AnnotationDbi RSQLite]; }; - PFAM_db = derive2 { name="PFAM.db"; version="3.2.2"; sha256="14q62rr08nwr2a4y26f4lnhxfwb2bx5dw1x0jyzdwk72pdslpwh8"; depends=[AnnotationDbi]; }; - POCRCannotation_db = derive2 { name="POCRCannotation.db"; version="3.2.2"; sha256="0rz7nvvw19z0hmpni7yhds30hvw2dcy9p7knhj074hv9a6l174bw"; depends=[AnnotationDbi org_Hs_eg_db]; }; - PartheenMetaData_db = derive2 { name="PartheenMetaData.db"; version="3.2.2"; sha256="1c89whi5iayjw3mqlw6793gr77y5kjs4j4fanl9waw9jxp0q2n5j"; depends=[AnnotationDbi org_Hs_eg_db]; }; + PFAM_db = derive2 { name="PFAM.db"; version="3.3.0"; sha256="11qd5mjqksvlsqsgljgaffrbzzbsnf8d1xx38a135fk3cgmk9vb4"; depends=[AnnotationDbi]; }; + POCRCannotation_db = derive2 { name="POCRCannotation.db"; version="3.2.3"; sha256="0ybvs4hrxpivdkhm0fxpib11vlxqqdk8prlyj78vj5qzyb3iy89d"; depends=[AnnotationDbi org_Hs_eg_db]; }; + PartheenMetaData_db = derive2 { name="PartheenMetaData.db"; version="3.2.3"; sha256="0d37c5b7s3fgkkvg7sj7gl9ksrjk5pyyv54vkys8w3qwgsm8yrdz"; depends=[AnnotationDbi org_Hs_eg_db]; }; PolyPhen_Hsapiens_dbSNP131 = derive2 { name="PolyPhen.Hsapiens.dbSNP131"; version="1.0.2"; sha256="1kikygkli41sn3rqihz0924prmqg2264ifj29vmg1a7qccm0kf7c"; depends=[AnnotationDbi RSQLite VariantAnnotation]; }; RaExExonProbesetLocation = derive2 { name="RaExExonProbesetLocation"; version="1.15.0"; sha256="1vvcc5zlpgbnqak4y2xywyd82j3s61wvhhp2ap0nni14sdxrl3hd"; depends=[AnnotationDbi]; }; Rattus_norvegicus = derive2 { name="Rattus.norvegicus"; version="1.3.1"; sha256="0bpd7i5jvl2jvf822mhxankx7cqqr4l70xp4f7hcknxw3lxia2f1"; depends=[AnnotationDbi GenomicFeatures GO_db org_Rn_eg_db OrganismDbi TxDb_Rnorvegicus_UCSC_rn5_refGene]; }; RmiR_Hs_miRNA = derive2 { name="RmiR.Hs.miRNA"; version="1.0.7"; sha256="0pybw908mlfrskwhnhc0bfaaqw2z13kvr10apf68s74zs0ss57b4"; depends=[AnnotationDbi]; }; RmiR_hsa = derive2 { name="RmiR.hsa"; version="1.0.5"; sha256="1c663vxjxgrs4p9wfbg0zli5qqbvq6hp11kzbqrn70ndkpsbnb3z"; depends=[AnnotationDbi]; }; - RnAgilentDesign028282_db = derive2 { name="RnAgilentDesign028282.db"; version="3.2.2"; sha256="088bkg2j4rwg97q7n6v4abvvw5cfdfkr5kwzf75bbvv6nmzid7pd"; depends=[AnnotationDbi org_Rn_eg_db]; }; - Roberts2005Annotation_db = derive2 { name="Roberts2005Annotation.db"; version="3.2.2"; sha256="0i7baybh8rly2v09rla7x6n5x5rvyr2wvc14cjavb32wihg42jpb"; depends=[AnnotationDbi org_Hs_eg_db]; }; - SHDZ_db = derive2 { name="SHDZ.db"; version="3.2.2"; sha256="0rw33wa66fy00hbixgp78h6ykyxs8v9f9dp5dkp4c637cbplgvr5"; depends=[AnnotationDbi org_Hs_eg_db]; }; + RnAgilentDesign028282_db = derive2 { name="RnAgilentDesign028282.db"; version="3.2.3"; sha256="00qri74spbpym7krk1clx0kl429b1592afk5bfr3j8j3iw99g4af"; depends=[AnnotationDbi org_Rn_eg_db]; }; + Roberts2005Annotation_db = derive2 { name="Roberts2005Annotation.db"; version="3.2.3"; sha256="1fc95c6x36n7zbr5ca680hyffxngma26gz0bdzylbw0w4mqmj6ga"; depends=[AnnotationDbi org_Hs_eg_db]; }; + SHDZ_db = derive2 { name="SHDZ.db"; version="3.2.3"; sha256="077xy2zx3f4c01di18ki32xmrwgsc1qjci3wj33nmgsy5925zdxs"; depends=[AnnotationDbi org_Hs_eg_db]; }; SIFT_Hsapiens_dbSNP132 = derive2 { name="SIFT.Hsapiens.dbSNP132"; version="1.0.2"; sha256="1akqhmv9hp41q2jrvz4xvpdi30c4c6v4xbz6ykn6pdf0217p7xry"; depends=[AnnotationDbi RSQLite VariantAnnotation]; }; SIFT_Hsapiens_dbSNP137 = derive2 { name="SIFT.Hsapiens.dbSNP137"; version="1.0.0"; sha256="1472abqanbwziyynr851xzhg7ck8w1n98ymmggg7s46hzix5mlj8"; depends=[AnnotationDbi RSQLite VariantAnnotation]; }; SNPlocs_Hsapiens_dbSNP_20090506 = derive2 { name="SNPlocs.Hsapiens.dbSNP.20090506"; version="0.99.9"; sha256="10943wbc56mz8ywcd71ndbdz7h3a9a17mzfdvj237wsgp62arfh6"; depends=[BSgenome GenomicRanges IRanges]; }; @@ -248,78 +258,88 @@ in with self; { TxDb_Athaliana_BioMart_plantsmart22 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart22"; version="3.0.1"; sha256="0j2zr4cddad7z1lxx9m9kfgyy7jajjnblpk9j8igd39ia3ixrpzc"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Athaliana_BioMart_plantsmart25 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart25"; version="3.1.3"; sha256="0a6v0l6p13zmiysi3k8dxzdlxng552qqj9rnlbdavdiidla0pvm3"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Athaliana_BioMart_plantsmart28 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart28"; version="3.2.2"; sha256="1yjyvrbx55y024lqg3b2rlf8pngqw5xi3p83j5ipan05wf0aq6ir"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Btaurus_UCSC_bosTau8_refGene = derive2 { name="TxDb.Btaurus.UCSC.bosTau8.refGene"; version="3.3.0"; sha256="023n916nxmb1l42sbzlknfmg6y1ad2s27bfhhxpvwl2c8mbbi2ci"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Celegans_UCSC_ce11_refGene = derive2 { name="TxDb.Celegans.UCSC.ce11.refGene"; version="3.3.0"; sha256="06ax8wnqzi0jk0c4asxczvfcfg03b46vksfr3lfcnfij96ksb9mh"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Celegans_UCSC_ce6_ensGene = derive2 { name="TxDb.Celegans.UCSC.ce6.ensGene"; version="3.2.2"; sha256="1sgppva33cdy4isj2is8mfalj5gmmkpbkq9w1d83a4agcq31mi90"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Cfamiliaris_UCSC_canFam3_refGene = derive2 { name="TxDb.Cfamiliaris.UCSC.canFam3.refGene"; version="3.3.0"; sha256="0h0n3yqdzqip1ikqq396pziyn0l5651yg87bb0cgc3gy2ldsrl74"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Dmelanogaster_UCSC_dm3_ensGene = derive2 { name="TxDb.Dmelanogaster.UCSC.dm3.ensGene"; version="3.2.2"; sha256="1337x23rdmiiza83ms225kri37h16q5hw1lw0m577abcgip3d7c7"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Dmelanogaster_UCSC_dm6_ensGene = derive2 { name="TxDb.Dmelanogaster.UCSC.dm6.ensGene"; version="3.3.0"; sha256="1kgwb63z37zq5mspqzf2rb09vl8b71kn8aa3fsmyn8phmhay98zw"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Drerio_UCSC_danRer10_refGene = derive2 { name="TxDb.Drerio.UCSC.danRer10.refGene"; version="3.3.0"; sha256="1wjzhbc6kqxdwbl1g1nc3ljvphqd7d9qx9dgfr31x100ddjgpkc6"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Ggallus_UCSC_galGal4_refGene = derive2 { name="TxDb.Ggallus.UCSC.galGal4.refGene"; version="3.3.0"; sha256="0bmc3hi953dildf89in9njwpy32mddxynami04z903ijsm26nkvi"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Hsapiens_BioMart_igis = derive2 { name="TxDb.Hsapiens.BioMart.igis"; version="2.3.2"; sha256="0590a2hkrpm33hmjg5g0gm6sig3xvc09m0q6lwmafgaajf90h6ky"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Hsapiens_UCSC_hg18_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg18.knownGene"; version="3.2.2"; sha256="1yk9ggclkqqfzrdp8gcqyplvif824pa7df54ck5gb1xb9q5s975w"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Hsapiens_UCSC_hg19_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg19.knownGene"; version="3.2.2"; sha256="1sajhcqqwazgz2lqbik7rd935i7kpnh08zxbp2ra10j72yqy4g86"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Hsapiens_UCSC_hg19_lincRNAsTranscripts = derive2 { name="TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts"; version="3.2.2"; sha256="0bmbp7kydvviczw8axgxq2wdlwq6fdas90jk9bg56avjq5syws2g"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Hsapiens_UCSC_hg38_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg38.knownGene"; version="3.1.3"; sha256="10250vgk5b9k7852n0ah47c4n535603mdm4swwlwbsh44438n544"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Mmulatta_UCSC_rheMac3_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac3.refGene"; version="3.3.0"; sha256="1gdmfi5v6cy22f7np2sn51l1vnq0v689iyg59sm7fhfggvlykndf"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Mmusculus_UCSC_mm10_ensGene = derive2 { name="TxDb.Mmusculus.UCSC.mm10.ensGene"; version="3.2.2"; sha256="15p0n8snfsc3lml2zsmrsn5w4nq3h0pgvw82z0y6i43g0wg8fzl6"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Mmusculus_UCSC_mm10_knownGene = derive2 { name="TxDb.Mmusculus.UCSC.mm10.knownGene"; version="3.2.2"; sha256="0cvqp1pv632br5bd84g2ymb67hm4ijwqk43pycvwb2fvhzgx089c"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Mmusculus_UCSC_mm9_knownGene = derive2 { name="TxDb.Mmusculus.UCSC.mm9.knownGene"; version="3.2.2"; sha256="16bjxy00363hf91ik2mqlqls86i07gia72qh92xc3l1ncch61mx2"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Ptroglodytes_UCSC_panTro4_refGene = derive2 { name="TxDb.Ptroglodytes.UCSC.panTro4.refGene"; version="3.3.0"; sha256="08qf0n15hm0wacvp70gr5pcwn1y64zk0z0ya3cx5h1w6ci7cpdlf"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Rnorvegicus_BioMart_igis = derive2 { name="TxDb.Rnorvegicus.BioMart.igis"; version="2.3.2"; sha256="1099vkk8g3lxbgjxsm1p1m3mjj08nsw282mqxgzpnrxf7m6jll76"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Rnorvegicus_UCSC_rn4_ensGene = derive2 { name="TxDb.Rnorvegicus.UCSC.rn4.ensGene"; version="3.2.2"; sha256="0gv8bynfxxa471ap069mjvfrb1d7a0c4w5k8hxkr4hnsm44mschm"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Rnorvegicus_UCSC_rn5_refGene = derive2 { name="TxDb.Rnorvegicus.UCSC.rn5.refGene"; version="3.2.2"; sha256="07lhh3xk4n8nsq6an5hz4r2mgm3m05vx34nhxd7x4lvy224ar18h"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Rnorvegicus_UCSC_rn5_refGene = derive2 { name="TxDb.Rnorvegicus.UCSC.rn5.refGene"; version="3.3.0"; sha256="13qhwb5x4813binp8grl41rd07j1h9agld8zmnkiqw7c1sdz3q7b"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Rnorvegicus_UCSC_rn6_refGene = derive2 { name="TxDb.Rnorvegicus.UCSC.rn6.refGene"; version="3.3.0"; sha256="0jpvrn8wq4wl4d2kh4n133nla43f94ym2rjh5f45d4kikqk6xl2i"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Scerevisiae_UCSC_sacCer2_sgdGene = derive2 { name="TxDb.Scerevisiae.UCSC.sacCer2.sgdGene"; version="3.2.2"; sha256="0l5gcwhbvzx60p9hjhd31angamb0hkgdg2avga7341j77rd5pwza"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Scerevisiae_UCSC_sacCer3_sgdGene = derive2 { name="TxDb.Scerevisiae.UCSC.sacCer3.sgdGene"; version="3.2.2"; sha256="1sjwl7fb3l3zxxbk8gkvzxwdsind0xjj7kmh7dachm6fi17hpb3d"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Sscrofa_UCSC_susScr3_refGene = derive2 { name="TxDb.Sscrofa.UCSC.susScr3.refGene"; version="3.3.0"; sha256="18hbrp5agka35zhqh4d809yx16brri5hi08pcpw41v3q3pk1599c"; depends=[AnnotationDbi GenomicFeatures]; }; XtraSNPlocs_Hsapiens_dbSNP141_GRCh38 = derive2 { name="XtraSNPlocs.Hsapiens.dbSNP141.GRCh38"; version="0.99.12"; sha256="0a27y0ngg760y5wwcja4dpd7cjd8h5zg1s2b3a1r54s21k65zny3"; depends=[BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; XtraSNPlocs_Hsapiens_dbSNP144_GRCh37 = derive2 { name="XtraSNPlocs.Hsapiens.dbSNP144.GRCh37"; version="0.99.12"; sha256="0k823fvqjmdkmd47m7wyra6jxmv8lnk2i1xl4pp0mh3zgb87hgfb"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; XtraSNPlocs_Hsapiens_dbSNP144_GRCh38 = derive2 { name="XtraSNPlocs.Hsapiens.dbSNP144.GRCh38"; version="0.99.12"; sha256="0d4q32ij2x4726wvw06sgmivid0n94vfdmszdyh607xlcahqxa5z"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; adme16cod_db = derive2 { name="adme16cod.db"; version="3.4.0"; sha256="1vn9s1lrl6zzs00madb111fdzqjfb45mprpjqap8bvib65942rvq"; depends=[AnnotationDbi org_Rn_eg_db]; }; - ag_db = derive2 { name="ag.db"; version="3.2.2"; sha256="1d0n0vn0jyr83dli5dsv4hk9l8szgk0lcnxgrlh49bh3bspdkghd"; depends=[AnnotationDbi org_At_tair_db]; }; + ag_db = derive2 { name="ag.db"; version="3.2.3"; sha256="1h0nb5z742pbh7hc8bwqkk9vh16kac8m3h3bh4v5flqfqw6rn8d0"; depends=[AnnotationDbi org_At_tair_db]; }; agcdf = derive2 { name="agcdf"; version="2.18.0"; sha256="07hq41dwqs7yy2sck8p7zl3v9x4bgl35kkycpazz5ql2g5zy6b7j"; depends=[AnnotationDbi]; }; agprobe = derive2 { name="agprobe"; version="2.18.0"; sha256="1vnawamcpz16na8nmlq2czfxcr325fwdnngxl65mmnbd0f4lmy3k"; depends=[AnnotationDbi]; }; - anopheles_db0 = derive2 { name="anopheles.db0"; version="3.2.3"; sha256="1x2ac300nhd2k7wi3677jflymhyqk5bcrpfrnv1qxpbkkghsng7x"; depends=[AnnotationDbi]; }; - arabidopsis_db0 = derive2 { name="arabidopsis.db0"; version="3.2.3"; sha256="0pwc6i5v414ykrvhrh53c533g28l45hj0nldmvnz84gq9ppl3n6d"; depends=[AnnotationDbi]; }; - ath1121501_db = derive2 { name="ath1121501.db"; version="3.2.2"; sha256="0780d3y44qf89yfvx6rk8sqf6f6h1m7b8vkv302p63qwanni3rwr"; depends=[AnnotationDbi org_At_tair_db]; }; + anopheles_db0 = derive2 { name="anopheles.db0"; version="3.3.0"; sha256="1w8bylv1v1v4v51jwddvvq12j1gxm0p53s640w4h07p00d28szjv"; depends=[AnnotationDbi]; }; + arabidopsis_db0 = derive2 { name="arabidopsis.db0"; version="3.3.0"; sha256="0jnkdy084zl3mpyhnxgfmc15sf6kb5hn47h3380s6w7chxz7c4as"; depends=[AnnotationDbi]; }; + ath1121501_db = derive2 { name="ath1121501.db"; version="3.2.3"; sha256="1zrf26cfhlmrb5pyfawwk4v8l1mflx8c43zsxrwkbmxzc1jnc7dv"; depends=[AnnotationDbi org_At_tair_db]; }; ath1121501cdf = derive2 { name="ath1121501cdf"; version="2.18.0"; sha256="1naq8f8dwgbmndx178nm2pw6hjx5ljx0w1wb4dfjifnl4bs5rqcc"; depends=[AnnotationDbi]; }; ath1121501probe = derive2 { name="ath1121501probe"; version="2.18.0"; sha256="0a2nd8zhp3ybis780l3rrmwcxskbl3a111g8w6m8qfwsw5vnlqg1"; depends=[AnnotationDbi]; }; barley1cdf = derive2 { name="barley1cdf"; version="2.18.0"; sha256="0rbij5cqr2sz33y5waybv85nrcgf70iwj5gk13g0xn9p1l1zxyn2"; depends=[AnnotationDbi]; }; barley1probe = derive2 { name="barley1probe"; version="2.18.0"; sha256="1kh5r748b4vkmvlfaclmrh07ypbrzgxn90liqfz1rwkabh6rfk71"; depends=[AnnotationDbi]; }; - bovine_db = derive2 { name="bovine.db"; version="3.2.2"; sha256="00rr0jihd5ch29phxsrij3l764m3aq154rhh5riz2x781dpmmms1"; depends=[AnnotationDbi org_Bt_eg_db]; }; - bovine_db0 = derive2 { name="bovine.db0"; version="3.2.4"; sha256="1f8swzmr8z0m0c2xcfwn7iah8ws8pv851857rgn86xjqsfn7f39r"; depends=[AnnotationDbi]; }; + bovine_db = derive2 { name="bovine.db"; version="3.2.3"; sha256="1i8mgk60hlmvngb4c727wajix9mca9gfg0pzxrnfcjwi87rpw7fy"; depends=[AnnotationDbi org_Bt_eg_db]; }; + bovine_db0 = derive2 { name="bovine.db0"; version="3.3.0"; sha256="18206lazpa4xn82wfz17l2n51rkw3jisqbk04msb8s39fj6zfnkq"; depends=[AnnotationDbi]; }; bovinecdf = derive2 { name="bovinecdf"; version="2.18.0"; sha256="13mf0yy0dypkm5n2ghl04xm6ayb9bn9qijqhgynksghi7s2k34mb"; depends=[AnnotationDbi]; }; bovineprobe = derive2 { name="bovineprobe"; version="2.18.0"; sha256="0i4afa5dksnir2nfrfh2cynjm59sm6vfaqa9wyag8cxg7c2nlm1i"; depends=[AnnotationDbi]; }; bsubtiliscdf = derive2 { name="bsubtiliscdf"; version="2.18.0"; sha256="1rihrjim37b49rhqr4nxga8sp67qri9xqlqc141mhbngh6cw3iyl"; depends=[AnnotationDbi]; }; bsubtilisprobe = derive2 { name="bsubtilisprobe"; version="2.18.0"; sha256="0k99hvgaswn96x4yanvr9cy8bdy69sd5q7yp6dj9synxj7s1fcw9"; depends=[AnnotationDbi]; }; cMAP = derive2 { name="cMAP"; version="1.15.1"; sha256="0pzizm27rgcaic7wsh52z30v1jwarmz4cwh1mksbygp63k54mwiv"; depends=[]; }; - canine_db = derive2 { name="canine.db"; version="3.2.2"; sha256="03dmgi8v75vazxjx2p1flk41264vdj73m0k65plpbjybjpa7r72k"; depends=[AnnotationDbi org_Cf_eg_db]; }; - canine_db0 = derive2 { name="canine.db0"; version="3.2.3"; sha256="0ng7prqkb65n4hrpssiza4l9m6k42ld6adap33jl48yih7lml8dy"; depends=[AnnotationDbi]; }; - canine2_db = derive2 { name="canine2.db"; version="3.2.2"; sha256="15diwc2gvcaa79japppx6bfn086h8rrydpllmpvayj1ym7q3wljd"; depends=[AnnotationDbi org_Cf_eg_db]; }; + canine_db = derive2 { name="canine.db"; version="3.2.3"; sha256="0wbyzhk827l49yxzimvznx9z6yag5nd4djm2hddysf5nk1ndapqs"; depends=[AnnotationDbi org_Cf_eg_db]; }; + canine_db0 = derive2 { name="canine.db0"; version="3.3.0"; sha256="0d6vhp39i5f7mmv6n5hq4m9yk0yj3kdpgnbfdhnzi400apf53da1"; depends=[AnnotationDbi]; }; + canine2_db = derive2 { name="canine2.db"; version="3.2.3"; sha256="1gzd2x23dkfiwnwqz9pdn5lp4l8aby525mhscn3xakw633si4dvz"; depends=[AnnotationDbi org_Cf_eg_db]; }; canine2cdf = derive2 { name="canine2cdf"; version="2.18.0"; sha256="077cmmnhjdk0vxjzm1kqf3q5kgx6chwkm59dr4s5dy019rqb6sqr"; depends=[AnnotationDbi]; }; canine2probe = derive2 { name="canine2probe"; version="2.18.0"; sha256="1l849a1dqy4kpcsxs0lvb48ag81i0f0ys0w4757rw4kp8ry59z4b"; depends=[AnnotationDbi]; }; caninecdf = derive2 { name="caninecdf"; version="2.18.0"; sha256="1f7pf3y4ccmj6681haqk8ds3dlzkv99s22m2r462dnnf38n17l3p"; depends=[AnnotationDbi]; }; canineprobe = derive2 { name="canineprobe"; version="2.18.0"; sha256="1y70rbxlbgx58vaxp1ry5jngvzz9prcbgd2ji00074ilx4k2cxn2"; depends=[AnnotationDbi]; }; - celegans_db = derive2 { name="celegans.db"; version="3.2.2"; sha256="17lk9gbm6hb99l0akc9sfvak89va2h4gxi5mnklpws27w7s6jzrp"; depends=[AnnotationDbi org_Ce_eg_db]; }; + celegans_db = derive2 { name="celegans.db"; version="3.2.3"; sha256="03ar84ji94a5v8s5ykcv4c72dxsmqkiyrz31dfc5ssvn7cgc9srv"; depends=[AnnotationDbi org_Ce_eg_db]; }; celeganscdf = derive2 { name="celeganscdf"; version="2.18.0"; sha256="0a6w0a48azg0i21j3aqb7fnxck3ff9w3gsi89bnlfh0zx6pknx7p"; depends=[AnnotationDbi]; }; celegansprobe = derive2 { name="celegansprobe"; version="2.18.0"; sha256="05k7si3f8pzkyb8jv0r2vkavbrqxsn4nawl92gcphfsylrwcddqb"; depends=[AnnotationDbi]; }; - chicken_db = derive2 { name="chicken.db"; version="3.2.2"; sha256="19ypq7sadvjdggzp5w1nk1jhxn9vmxpvwcnwczdyxx7f0y3ai1mp"; depends=[AnnotationDbi org_Gg_eg_db]; }; - chicken_db0 = derive2 { name="chicken.db0"; version="3.2.4"; sha256="0jp7264f83ss94m2i4r9kzcgcpq54344vqvjb51a11xf68hkcmj8"; depends=[AnnotationDbi]; }; + chicken_db = derive2 { name="chicken.db"; version="3.2.3"; sha256="1rq9afkpcpv8qi75shvnsw8di3ycai4ylv7jq9zwj51zlwlw9cpq"; depends=[AnnotationDbi org_Gg_eg_db]; }; + chicken_db0 = derive2 { name="chicken.db0"; version="3.3.0"; sha256="0zqaps2cf6c8zsra9x6z98dgpyp65hc7p1bx5qjn047v24swpgs5"; depends=[AnnotationDbi]; }; chickencdf = derive2 { name="chickencdf"; version="2.18.0"; sha256="09hhim5s9xj7n2b5rhn1svf5qly2mn0rr2v2ls25hfzyrqcbxlz1"; depends=[AnnotationDbi]; }; chickenprobe = derive2 { name="chickenprobe"; version="2.18.0"; sha256="1fdsiwfyg7fwslrr7xs3gny7sw24bzg5k1fvlyzb1477sgj0pid3"; depends=[AnnotationDbi]; }; - chimp_db0 = derive2 { name="chimp.db0"; version="3.2.3"; sha256="0cj1m9xddrd1dk71x25dm72smwmvpab9z5q2lp8qj9cc1xxz1amw"; depends=[AnnotationDbi]; }; + chimp_db0 = derive2 { name="chimp.db0"; version="3.3.0"; sha256="0n655psk47zvdgv4kfjr8ffqz78pimvqbhixlscfiwss01vaspa0"; depends=[AnnotationDbi]; }; citruscdf = derive2 { name="citruscdf"; version="2.18.0"; sha256="1326mj1xf3k4v5iyyn46whx24qfng0x3cv6rvckdr1ycc1v887dn"; depends=[AnnotationDbi]; }; citrusprobe = derive2 { name="citrusprobe"; version="2.18.0"; sha256="0bf1wic136cxwgs4j13wsyqasnyvr0jw1hzg6qizndmy7g8hrb87"; depends=[AnnotationDbi]; }; cottoncdf = derive2 { name="cottoncdf"; version="2.18.0"; sha256="0xfwwla941fbxddykgizpar8dh8q459src7kc5wyrsd3swp3zyp5"; depends=[AnnotationDbi]; }; cottonprobe = derive2 { name="cottonprobe"; version="2.18.0"; sha256="04mfjd3a7ikif4pv46s6h9dj2s912w8ihg4yyiii7s3jlmvy62ah"; depends=[AnnotationDbi]; }; cyp450cdf = derive2 { name="cyp450cdf"; version="2.18.0"; sha256="1mbqn9940sxc0ksvykdk3i4jvnkv9q91igwn1rwmv2z18hz18qf0"; depends=[AnnotationDbi]; }; - drosgenome1_db = derive2 { name="drosgenome1.db"; version="3.2.2"; sha256="13jwvbngrp45nn0a9x134n8y9fi4ibh7bqvnpz6am9sz7xz07lf0"; depends=[AnnotationDbi org_Dm_eg_db]; }; + drosgenome1_db = derive2 { name="drosgenome1.db"; version="3.2.3"; sha256="1m9lpgy64a1wrlril8sy9vriq7l3nzw9yzmf5kis6lij6g8mk7nk"; depends=[AnnotationDbi org_Dm_eg_db]; }; drosgenome1cdf = derive2 { name="drosgenome1cdf"; version="2.18.0"; sha256="02x6kcnzayx3adz5kjrmfcly36j6j5xwwknd16nskh9050g8xg1y"; depends=[AnnotationDbi]; }; drosgenome1probe = derive2 { name="drosgenome1probe"; version="2.18.0"; sha256="1vzf8197nkbdqdpafpafxlkcy61d6mwd7wcbakdhq5493dwhdi98"; depends=[AnnotationDbi]; }; - drosophila2_db = derive2 { name="drosophila2.db"; version="3.2.2"; sha256="1ih0icflafgvifmzzm57jaakd31wr91hs8fnkwbkmhah081llbkk"; depends=[AnnotationDbi org_Dm_eg_db]; }; + drosophila2_db = derive2 { name="drosophila2.db"; version="3.2.3"; sha256="1k19q093b76yy18ynxma27zk4d5q71sa0gj9n8gvgzvnmlzimpjg"; depends=[AnnotationDbi org_Dm_eg_db]; }; drosophila2cdf = derive2 { name="drosophila2cdf"; version="2.18.0"; sha256="1w8k5br8nl7m5l4r05af8nc2wwnlpxxl8ncvvhqx5annlb2ynrg3"; depends=[AnnotationDbi]; }; drosophila2probe = derive2 { name="drosophila2probe"; version="2.18.0"; sha256="1b8wnkyg0p7cffs3ka7by295jsys1sx2gpbj2j63239f0dylpl0i"; depends=[AnnotationDbi]; }; - ecoli2_db = derive2 { name="ecoli2.db"; version="3.2.2"; sha256="0r4ywlk2gicy3s3g5v070n51j0incc38g2p9hhx82sgbgah8pjgq"; depends=[AnnotationDbi org_EcK12_eg_db]; }; + ecoli2_db = derive2 { name="ecoli2.db"; version="3.2.3"; sha256="07vc5fl2zq2f65ndcldyzvwfpl65snp6ygvw658j4036lbb7cpjl"; depends=[AnnotationDbi org_EcK12_eg_db]; }; ecoli2cdf = derive2 { name="ecoli2cdf"; version="2.18.0"; sha256="1rkxrwadq9kg9685z9pg6rgc4bblkx5p3c6snsl4gv2k188dva9r"; depends=[AnnotationDbi]; }; ecoli2probe = derive2 { name="ecoli2probe"; version="2.18.0"; sha256="11q4ka0ncjapahic49xdl9919vm9frrwlqgj101krgkg262lfm8n"; depends=[AnnotationDbi]; }; - ecoliK12_db0 = derive2 { name="ecoliK12.db0"; version="3.2.3"; sha256="0svmbaiaabgrl1p4bwwsaxsa7x5s4sdyrqcwxrfsfsdzzgvjkaxj"; depends=[AnnotationDbi]; }; - ecoliSakai_db0 = derive2 { name="ecoliSakai.db0"; version="3.2.3"; sha256="050ymh9jk2c21x4v56rbdigqp6ip6lv0sg7m6kr8sn8nqdl191mx"; depends=[AnnotationDbi]; }; + ecoliK12_db0 = derive2 { name="ecoliK12.db0"; version="3.3.0"; sha256="00cjwrlkr2y6m4x30n39iykiwb4r36s7pp0qzg4v2xgq178n3jsv"; depends=[AnnotationDbi]; }; + ecoliSakai_db0 = derive2 { name="ecoliSakai.db0"; version="3.3.0"; sha256="1p5br2s8wfrxa20kg800nn90qz29j8459wp90bkhprya2h8f2pf4"; depends=[AnnotationDbi]; }; ecoliasv2cdf = derive2 { name="ecoliasv2cdf"; version="2.18.0"; sha256="16i6has9qgmzakcy24racc1h9j331wndv5c87qp5r1zrai61zyav"; depends=[AnnotationDbi]; }; ecoliasv2probe = derive2 { name="ecoliasv2probe"; version="2.18.0"; sha256="1hfrnal170cdigc2fmnynb75jjsiq77p4x6ws9gah558hvx87nk3"; depends=[AnnotationDbi]; }; ecolicdf = derive2 { name="ecolicdf"; version="2.18.0"; sha256="18g5prjykn356k35m131ifn128k5mhij2x26balqav0azigzjqsn"; depends=[AnnotationDbi]; }; ecoliprobe = derive2 { name="ecoliprobe"; version="2.18.0"; sha256="17g5zxfzsak7a0w51irc0w1w2i5ngdkx9db6rhv1fyp8mfjgaphd"; depends=[AnnotationDbi]; }; - fly_db0 = derive2 { name="fly.db0"; version="3.2.3"; sha256="1dgc6qlnr0cmc7xip945696nn5r6gx53fzgjjr80c0r2ql04a4fp"; depends=[AnnotationDbi]; }; + fly_db0 = derive2 { name="fly.db0"; version="3.3.0"; sha256="00nk8rwnrl8j2k3pafppzaiipfmclhgdlbk54zj41jakrqd5cmk2"; depends=[AnnotationDbi]; }; gahgu133a_db = derive2 { name="gahgu133a.db"; version="2.2.0"; sha256="1ikyvj1gi39qbakpn5wl0823ljavng1k33zvpf2k24jdhdw927qb"; depends=[AnnotationDbi]; }; gahgu133acdf = derive2 { name="gahgu133acdf"; version="2.2.1"; sha256="0hvd4iwj2fjiqp1jzbz68i1w6jn77nrsih316jlj85bhb35f7cyv"; depends=[]; }; gahgu133aprobe = derive2 { name="gahgu133aprobe"; version="2.2.1"; sha256="108lki2bg55ysh485shxxsz1imm26g5a3grgcmxbfs4pgna3g4h0"; depends=[AnnotationDbi]; }; @@ -347,18 +367,19 @@ in with self; { genomewidesnp5Crlmm = derive2 { name="genomewidesnp5Crlmm"; version="1.0.6"; sha256="06dmwnjy3gb53y6nr02dmp22qzfl5d63wppazrabcqbzwimhnvp8"; depends=[]; }; genomewidesnp6Crlmm = derive2 { name="genomewidesnp6Crlmm"; version="1.0.7"; sha256="16qcxa32fmbdcv5dck0grsnqyfcqql7wpxa1l6andv9hrvabv2jx"; depends=[]; }; gp53cdf = derive2 { name="gp53cdf"; version="2.18.0"; sha256="11p69rxia8bqajix3jg34vnhczyxgpq50k5kdh878h7bn0mpg6bj"; depends=[AnnotationDbi]; }; - grasp2db = derive2 { name="grasp2db"; version="0.1.9"; sha256="1667hhk547fs8v7xsz2d0l19r2fksk1ymnpvag1jwspb2m10lq22"; depends=[AnnotationHub digest dplyr GenomeInfoDb RSQLite]; }; + grasp2db = derive2 { name="grasp2db"; version="0.1.14"; sha256="14y25k1fwh0272ws83rcpi25wc97r4z5mpmck8q9i9nshd5dmym4"; depends=[AnnotationHub digest dplyr GenomeInfoDb RSQLite]; }; + greengenes13_5MgDb = derive2 { name="greengenes13.5MgDb"; version="0.99.0"; sha256="1ssh015yspl470wq5rnkxkb7xid27gzvga3hx9a9vj08iqal3rbq"; depends=[metagenomeFeatures]; }; h10kcod_db = derive2 { name="h10kcod.db"; version="3.4.0"; sha256="0f30n339ib8q478a7axjdh8hzrqws762m680ha0sxm3a0nxwapgg"; depends=[AnnotationDbi org_Hs_eg_db]; }; h20kcod_db = derive2 { name="h20kcod.db"; version="3.4.0"; sha256="0csh59bgpn5xyaw6bfg7nvi9vcvjd4f66f0dr3xh7c6316835mnx"; depends=[AnnotationDbi org_Hs_eg_db]; }; hapmap370k = derive2 { name="hapmap370k"; version="1.0.1"; sha256="0n6rmrqcbl665a1l6jxk1gn6518x4gxadzy5dc9k9v01cbh3qzmw"; depends=[]; }; - hcg110_db = derive2 { name="hcg110.db"; version="3.2.2"; sha256="06hbf6r86s5xvbn4l9hpikr504nb0wg680vvqflr3c9xpnaczfap"; depends=[AnnotationDbi org_Hs_eg_db]; }; + hcg110_db = derive2 { name="hcg110.db"; version="3.2.3"; sha256="1rdm6fcfslcyx7hhl658pvgcyn8sl5d08mnp0hcdzx7j6p18ryin"; depends=[AnnotationDbi org_Hs_eg_db]; }; hcg110cdf = derive2 { name="hcg110cdf"; version="2.18.0"; sha256="1208b5sn9cdsvz4wa29ha5vp9mpvafkq0adj7nlzs4yav2z26van"; depends=[AnnotationDbi]; }; hcg110probe = derive2 { name="hcg110probe"; version="2.18.0"; sha256="0avr5dmm86b81fli5zb2vp6ax8imqxvc5bzsksq574a8rn6xf1dq"; depends=[AnnotationDbi]; }; - hgfocus_db = derive2 { name="hgfocus.db"; version="3.2.2"; sha256="0f9mr56mxs3abryhy19rz1kis4p1v9c595wvbmmk6d61gada2z7h"; depends=[AnnotationDbi org_Hs_eg_db]; }; + hgfocus_db = derive2 { name="hgfocus.db"; version="3.2.3"; sha256="03l9r1517varyl561s3x27fs3sasfkp2g5vwys8axqy7ixcllwcg"; depends=[AnnotationDbi org_Hs_eg_db]; }; hgfocuscdf = derive2 { name="hgfocuscdf"; version="2.18.0"; sha256="0vxgz3wwjf4qqzpsa8d03s7p2az9xbzlkxkdj0czcj67nmq467ya"; depends=[AnnotationDbi]; }; hgfocusprobe = derive2 { name="hgfocusprobe"; version="2.18.0"; sha256="0fizkj2g1imslxk43ibf52nj8jzsfryq7h2pzhvqw5n9vnpinrc2"; depends=[AnnotationDbi]; }; - hgu133a_db = derive2 { name="hgu133a.db"; version="3.2.2"; sha256="18xcpbr3zd80fwx6ac99ng6wmv4r2my369gn559f936yganhnzsa"; depends=[AnnotationDbi org_Hs_eg_db]; }; - hgu133a2_db = derive2 { name="hgu133a2.db"; version="3.2.2"; sha256="077dng6gwss73vaxakkmk8dzy78cfb7872r4v1qj5drxp68wz1li"; depends=[AnnotationDbi org_Hs_eg_db]; }; + hgu133a_db = derive2 { name="hgu133a.db"; version="3.2.3"; sha256="16hl674id1c0y2gi6q5y7dfx7gacpdsxavw1ifar99h9pnigzskm"; depends=[AnnotationDbi org_Hs_eg_db]; }; + hgu133a2_db = derive2 { name="hgu133a2.db"; version="3.2.3"; sha256="1swh2j95f9xkvhi0lyvk4a1gyj5d1lgrsnc2fj57fh4l9763nzk8"; depends=[AnnotationDbi org_Hs_eg_db]; }; hgu133a2cdf = derive2 { name="hgu133a2cdf"; version="2.18.0"; sha256="0lqllzvp0w3s46kjvpvjn1snz63im33m3hhvnkl3knb86k6pn3za"; depends=[AnnotationDbi]; }; hgu133a2frmavecs = derive2 { name="hgu133a2frmavecs"; version="1.2.0"; sha256="1qy2z6z135q8xncjqn1n31xg8az9wnwrz78cis57lzav9r0fw853"; depends=[]; }; hgu133a2probe = derive2 { name="hgu133a2probe"; version="2.18.0"; sha256="0ais6f92kmjmzywsdqvxcd5fs6y7kf0ip9wm62szhahyl9chwj9k"; depends=[AnnotationDbi]; }; @@ -367,45 +388,45 @@ in with self; { hgu133aprobe = derive2 { name="hgu133aprobe"; version="2.18.0"; sha256="15r9zy4g9p86344zf0w7m0vfln8js19kmr68vq670kncf6j6ypbn"; depends=[AnnotationDbi]; }; hgu133atagcdf = derive2 { name="hgu133atagcdf"; version="2.18.0"; sha256="0rbnhzwbv6nbkssdgsibjpnqfads7x9rpgy2n7qy02mkr6kysndg"; depends=[AnnotationDbi]; }; hgu133atagprobe = derive2 { name="hgu133atagprobe"; version="2.18.0"; sha256="1qxrdi0rjj8kcl8rl3lack5ky25n39hj5a91scd0fy32zvnazmk6"; depends=[AnnotationDbi]; }; - hgu133b_db = derive2 { name="hgu133b.db"; version="3.2.2"; sha256="0s5h54fqfmc3k1cgcaq0skdlnd7yzzwh9gvfnv4prg3mwvmsvacy"; depends=[AnnotationDbi org_Hs_eg_db]; }; + hgu133b_db = derive2 { name="hgu133b.db"; version="3.2.3"; sha256="1ia32fv32s6f0sdlvzz55ficivsrxyxwkavyrk435gfmnjy07xmv"; depends=[AnnotationDbi org_Hs_eg_db]; }; hgu133bcdf = derive2 { name="hgu133bcdf"; version="2.18.0"; sha256="0dlg45pf35cff48704laryrxgwr0p31njki6c74ibxacpxmvwzv3"; depends=[AnnotationDbi]; }; hgu133bprobe = derive2 { name="hgu133bprobe"; version="2.18.0"; sha256="1i8v1fbjfnzv556551kbj13q9i0lvzjgvzq8xapmwph8y86bfcx3"; depends=[AnnotationDbi]; }; - hgu133plus2_db = derive2 { name="hgu133plus2.db"; version="3.2.2"; sha256="0x21g8iwr9zj29xj5y16byg4nbnslgkh8l5hxhayckz3hirzns5f"; depends=[AnnotationDbi org_Hs_eg_db]; }; + hgu133plus2_db = derive2 { name="hgu133plus2.db"; version="3.2.3"; sha256="0j855k58syb12pxhkpxf6g0yglzq8kprs3j14cfwif56d5xj8sx5"; depends=[AnnotationDbi org_Hs_eg_db]; }; hgu133plus2cdf = derive2 { name="hgu133plus2cdf"; version="2.18.0"; sha256="03n9vmclv2ri6n88lsz8yzgsrz33vfclj468jv01h3is2gq09x99"; depends=[AnnotationDbi]; }; hgu133plus2frmavecs = derive2 { name="hgu133plus2frmavecs"; version="1.5.0"; sha256="1r3g4hqxxm3l054kx33bsl9qkd46mkd4d266pm0jgqih6mv5640c"; depends=[]; }; hgu133plus2probe = derive2 { name="hgu133plus2probe"; version="2.18.0"; sha256="1xdg6x6iv9xi0vdlfl4c65zvqs2946yd2bhr9nqhhyqp6h8ghsdc"; depends=[AnnotationDbi]; }; - hgu219_db = derive2 { name="hgu219.db"; version="3.2.2"; sha256="0im7537pfv25ayagbjvc5p83xkl4ppzr329q2qw4b3yknvj51fr7"; depends=[AnnotationDbi org_Hs_eg_db]; }; + hgu219_db = derive2 { name="hgu219.db"; version="3.2.3"; sha256="1yv7wlz49pfjqwg5s9mzr31457imwn8cq97bg4m1ybib7787m134"; depends=[AnnotationDbi org_Hs_eg_db]; }; hgu219cdf = derive2 { name="hgu219cdf"; version="2.18.0"; sha256="14kbn7r84hp4vssxl8pfs7zlg34mdm4qf1m2dw7agrixmdblnz0d"; depends=[AnnotationDbi]; }; hgu219probe = derive2 { name="hgu219probe"; version="2.18.0"; sha256="0sy5q95yppyg8bvwc6prznqzl01xrbl0ic22rj2s8wwsrppsm3m5"; depends=[AnnotationDbi]; }; - hgu95a_db = derive2 { name="hgu95a.db"; version="3.2.2"; sha256="056wf0zqsnb0w3izwqwhk0fjnaxv1barp4ndlzyq9lzbp37skb2l"; depends=[AnnotationDbi org_Hs_eg_db]; }; + hgu95a_db = derive2 { name="hgu95a.db"; version="3.2.3"; sha256="11zahda5frpfr5dqz5p635ki0pzd0h4k7rs7x9q5480794kfnyzc"; depends=[AnnotationDbi org_Hs_eg_db]; }; hgu95acdf = derive2 { name="hgu95acdf"; version="2.18.0"; sha256="1mxac5vd0vzn3k8357lf0j1476q3b7nx6nr54n6j84qi2nx1wknr"; depends=[AnnotationDbi]; }; hgu95aprobe = derive2 { name="hgu95aprobe"; version="2.18.0"; sha256="0sig3g5qmigv7vgcr3rpkn2cmcn2ljp0arhilni7yqsnzqn1dbma"; depends=[AnnotationDbi]; }; hgu95av2 = derive2 { name="hgu95av2"; version="2.2.0"; sha256="181bady90v89yx2gzwahhcl63aiypcx33pkfnjxkyq45qgb18bqi"; depends=[]; }; - hgu95av2_db = derive2 { name="hgu95av2.db"; version="3.2.2"; sha256="0rh6lf3017cm1k805v4c7dq551vjgjxdwqawin5jc03smbpi67wi"; depends=[AnnotationDbi org_Hs_eg_db]; }; + hgu95av2_db = derive2 { name="hgu95av2.db"; version="3.2.3"; sha256="12aiyg11pciwmlakn25k3rm0kskl0z8jv5brp8pshs6yfcsh4sn5"; depends=[AnnotationDbi org_Hs_eg_db]; }; hgu95av2cdf = derive2 { name="hgu95av2cdf"; version="2.18.0"; sha256="1zp1y5awnkprkmk01rmn881y50bslfi8s33i8bws39am5xma0jfl"; depends=[AnnotationDbi]; }; hgu95av2probe = derive2 { name="hgu95av2probe"; version="2.18.0"; sha256="0hv0asd44b69h3n87j5ffi9i87w12iad74754wzxgfxihb0yn58g"; depends=[AnnotationDbi]; }; - hgu95b_db = derive2 { name="hgu95b.db"; version="3.2.2"; sha256="1snz8khvppwlalphyid21a366vz2c8barbx7da32klblwmryiyqi"; depends=[AnnotationDbi org_Hs_eg_db]; }; + hgu95b_db = derive2 { name="hgu95b.db"; version="3.2.3"; sha256="1ywjaxazqhij6g3qx1pad5w2xkjsm8gxxhhhlxvkjm8py4a3cacd"; depends=[AnnotationDbi org_Hs_eg_db]; }; hgu95bcdf = derive2 { name="hgu95bcdf"; version="2.18.0"; sha256="10inx0p0155ii4464la0amww91ynyqqh59zyl1lfhnvkl38k6ylj"; depends=[AnnotationDbi]; }; hgu95bprobe = derive2 { name="hgu95bprobe"; version="2.18.0"; sha256="1y8i2cn0zh2jkyi9j8giv5i4dag2c7jd5zyaza72nsyj4qhgmccg"; depends=[AnnotationDbi]; }; - hgu95c_db = derive2 { name="hgu95c.db"; version="3.2.2"; sha256="1ckfn7nww2bha9vvdghijzrzpkfc0bv5pr1ph20lkj5hvn6bra2f"; depends=[AnnotationDbi org_Hs_eg_db]; }; + hgu95c_db = derive2 { name="hgu95c.db"; version="3.2.3"; sha256="15qp585208sssg21awccfgs5w13w5h108fgin43sva92v4j7jckv"; depends=[AnnotationDbi org_Hs_eg_db]; }; hgu95ccdf = derive2 { name="hgu95ccdf"; version="2.18.0"; sha256="1mai2l81mwg3irncvddlcbcx24nvfk0gcx4h1r3mfg47smx1n3rd"; depends=[AnnotationDbi]; }; hgu95cprobe = derive2 { name="hgu95cprobe"; version="2.18.0"; sha256="0glbyjk0mfllfzwfj5hszmy4pwd5ghkb1lrzh215zzxyvnyb47fd"; depends=[AnnotationDbi]; }; - hgu95d_db = derive2 { name="hgu95d.db"; version="3.2.2"; sha256="1vqn87vln1mk4bxbd01jq6660z1px8nkyagbkhp1vy26cqwrmg5w"; depends=[AnnotationDbi org_Hs_eg_db]; }; + hgu95d_db = derive2 { name="hgu95d.db"; version="3.2.3"; sha256="0df03f5lhrrzcjfq3cv6746ay9yxdyd2zp5p6lnms6pb8mvbmix0"; depends=[AnnotationDbi org_Hs_eg_db]; }; hgu95dcdf = derive2 { name="hgu95dcdf"; version="2.18.0"; sha256="0s60ibk6qsfqibhns2kidglvxkigia31yzr49b03kcazmwm4xqc0"; depends=[AnnotationDbi]; }; hgu95dprobe = derive2 { name="hgu95dprobe"; version="2.18.0"; sha256="0mlj28c82b21010rhj2pzpmv2wf3fis4dwsi7q7292bza2sxxi6g"; depends=[AnnotationDbi]; }; - hgu95e_db = derive2 { name="hgu95e.db"; version="3.2.2"; sha256="1fzw86wycjlgi7vym47p1ningl2vhcyj6rwlp9l93ayg16lkq2fc"; depends=[AnnotationDbi org_Hs_eg_db]; }; + hgu95e_db = derive2 { name="hgu95e.db"; version="3.2.3"; sha256="1crxr6pa23sd3f8p5yf86p325nh4krdlwsiz7fpxml3i7a7ggsab"; depends=[AnnotationDbi org_Hs_eg_db]; }; hgu95ecdf = derive2 { name="hgu95ecdf"; version="2.18.0"; sha256="02y97vbhxn3c31q1i2z5l6jv51z8bk8p7vp1kb2y8rkmsw171brv"; depends=[AnnotationDbi]; }; hgu95eprobe = derive2 { name="hgu95eprobe"; version="2.18.0"; sha256="1daflz4s99xb0v91ckb96bzjqmgm334xsngz18l2bd6r8nkxhgzb"; depends=[AnnotationDbi]; }; - hguDKFZ31_db = derive2 { name="hguDKFZ31.db"; version="3.2.2"; sha256="1biz5imp5z6nippz2g5ky1j1zd9ckz1c1yi57rffxa3gc2nm35rh"; depends=[AnnotationDbi org_Hs_eg_db]; }; - hguatlas13k_db = derive2 { name="hguatlas13k.db"; version="3.2.2"; sha256="14a1annbrvkh05akivhbm7p8pdsv6lknrlhvj8n3m5bxlbrr6ii5"; depends=[AnnotationDbi org_Hs_eg_db]; }; - hgubeta7_db = derive2 { name="hgubeta7.db"; version="3.2.2"; sha256="1g7wbbijj210w0g4cas6d7ig92ndsm6kfgs5jd7h55avsjjp7jcj"; depends=[AnnotationDbi org_Hs_eg_db]; }; - hgug4100a_db = derive2 { name="hgug4100a.db"; version="3.2.2"; sha256="05wb186mrz9rrffiap2ck4k4x9r5liyd3j85zm59a4pqanvlm2a6"; depends=[AnnotationDbi org_Hs_eg_db]; }; - hgug4101a_db = derive2 { name="hgug4101a.db"; version="3.2.2"; sha256="0l0p4c85p2fak8ip9jyas5g6axziq0jidkmz6baigg7cxrjl4m4m"; depends=[AnnotationDbi org_Hs_eg_db]; }; - hgug4110b_db = derive2 { name="hgug4110b.db"; version="3.2.2"; sha256="10qclkkxs7hi0h5h30zqbz2yija9vrp482xahygrc55ihwgpqr3l"; depends=[AnnotationDbi org_Hs_eg_db]; }; - hgug4111a_db = derive2 { name="hgug4111a.db"; version="3.2.2"; sha256="02sx9ph6n6z36q1a03dpld8lki9in082akiaf2g115inmcd7ss0h"; depends=[AnnotationDbi org_Hs_eg_db]; }; - hgug4112a_db = derive2 { name="hgug4112a.db"; version="3.2.2"; sha256="07pclh2cabf5nmf631x8gs713mjz2w132ilmlr284s1m3667p94r"; depends=[AnnotationDbi org_Hs_eg_db]; }; + hguDKFZ31_db = derive2 { name="hguDKFZ31.db"; version="3.2.3"; sha256="1pm0w9jdppd4xx9civh88b15nzyqv6rs7d8yljv6yf5sspxl8var"; depends=[AnnotationDbi org_Hs_eg_db]; }; + hguatlas13k_db = derive2 { name="hguatlas13k.db"; version="3.2.3"; sha256="15psxwig9d836wdf410i093k0hbdxnzd9lix4d544yz160v93di0"; depends=[AnnotationDbi org_Hs_eg_db]; }; + hgubeta7_db = derive2 { name="hgubeta7.db"; version="3.2.3"; sha256="0dh1068ph7cq343df1csyc4j9jix9gcc4bfkvvc2whyq0a1kzr8h"; depends=[AnnotationDbi org_Hs_eg_db]; }; + hgug4100a_db = derive2 { name="hgug4100a.db"; version="3.2.3"; sha256="0crvsnrx58smj45115qb05hss1qkpwmydpdm6qbzh0j16ab7p59n"; depends=[AnnotationDbi org_Hs_eg_db]; }; + hgug4101a_db = derive2 { name="hgug4101a.db"; version="3.2.3"; sha256="1hnz2m9q52mw4mxykvaiilsq0d0jmkq666py8zjh94sy0gsnhsqx"; depends=[AnnotationDbi org_Hs_eg_db]; }; + hgug4110b_db = derive2 { name="hgug4110b.db"; version="3.2.3"; sha256="0qpiiy6dklf9alrmjmmv51q09p7hq4w8frn8zy12glcm65h2vfcy"; depends=[AnnotationDbi org_Hs_eg_db]; }; + hgug4111a_db = derive2 { name="hgug4111a.db"; version="3.2.3"; sha256="0bd897592q92cf8bvl0hqkcxid451lwm36s7mpsvgb5yzw3rb63n"; depends=[AnnotationDbi org_Hs_eg_db]; }; + hgug4112a_db = derive2 { name="hgug4112a.db"; version="3.2.3"; sha256="0l80pblm047pvl5sqvasb6d45lazqhsff3w5lljiwzjhn0r7x5m3"; depends=[AnnotationDbi org_Hs_eg_db]; }; hgug4845a_db = derive2 { name="hgug4845a.db"; version="0.0.3"; sha256="1933n2n6yky40nxf1qlbpa6acjwfr07hbrpvvcick7m09al1wks6"; depends=[AnnotationDbi org_Hs_eg_db]; }; - hguqiagenv3_db = derive2 { name="hguqiagenv3.db"; version="3.2.2"; sha256="0jbvggypg50wkcxyx7xxn87cnhvbyndfqkgdzrpcm8p1czw2gkvz"; depends=[AnnotationDbi org_Hs_eg_db]; }; + hguqiagenv3_db = derive2 { name="hguqiagenv3.db"; version="3.2.3"; sha256="1ylji60m2zb8ialbl5wdrxy425sriq17z3bg8ikvc5b5gjsw6l7w"; depends=[AnnotationDbi org_Hs_eg_db]; }; hi16cod_db = derive2 { name="hi16cod.db"; version="3.4.0"; sha256="0ydi0jljx8igzrqaspr9yywv43h2zimm9fk7xc55nm6mnp5jl7kl"; depends=[AnnotationDbi org_Hs_eg_db]; }; hivprtplus2cdf = derive2 { name="hivprtplus2cdf"; version="2.18.0"; sha256="1jv4qzajikz7x4vq87wzn7hf6hx9r4c2gkjhfp93kqzwzddmigf4"; depends=[AnnotationDbi]; }; hom_At_inp_db = derive2 { name="hom.At.inp.db"; version="3.1.2"; sha256="1ka9ssjfxml9sz9k83bs6icbkkyz581svh0pwpvpifzg79qapzwi"; depends=[AnnotationDbi]; }; @@ -420,11 +441,11 @@ in with self; { hspeccdf = derive2 { name="hspeccdf"; version="0.99.1"; sha256="07azl9zpg552ic7li14p6n09ba3jbqqclwffjfpd2vc249x0n4fw"; depends=[AnnotationDbi]; }; hta20stprobeset_db = derive2 { name="hta20stprobeset.db"; version="8.3.0"; sha256="05blv54srnw7yrs8x32syzk1xdksrl8gswk837m7qjgciq8hazcn"; depends=[AnnotationDbi org_Hs_eg_db]; }; hta20sttranscriptcluster_db = derive2 { name="hta20sttranscriptcluster.db"; version="8.3.1"; sha256="0ana9fg3ms22m394w8qbfvfy663l0r163w0qfwh5ir59rs4bpalf"; depends=[AnnotationDbi org_Hs_eg_db]; }; - hthgu133a_db = derive2 { name="hthgu133a.db"; version="3.2.2"; sha256="0hkkpxh7737dv6msjkfir84sh85fgy9rz3h3mndsslsfjn7j17kk"; depends=[AnnotationDbi org_Hs_eg_db]; }; + hthgu133a_db = derive2 { name="hthgu133a.db"; version="3.2.3"; sha256="0sgi7pbkndcpl775qn36rdlsm4j6ip2lfk0cmkh8zqryrj3yq6hh"; depends=[AnnotationDbi org_Hs_eg_db]; }; hthgu133acdf = derive2 { name="hthgu133acdf"; version="2.18.0"; sha256="1a5b421lx0nxy3mrrxjxifwjpnv289c5q2a89xhnkwlcfhqlzqrp"; depends=[AnnotationDbi]; }; hthgu133afrmavecs = derive2 { name="hthgu133afrmavecs"; version="1.3.0"; sha256="0466xgi67r5rpp7cs06ib0cr6vvx8d881g5l96b8sh9948pbn4ss"; depends=[]; }; hthgu133aprobe = derive2 { name="hthgu133aprobe"; version="2.18.0"; sha256="0fanrxa21h961zsgzjrv4mzv8psd3h9sjxrzr126ca8qfqghvkc3"; depends=[AnnotationDbi]; }; - hthgu133b_db = derive2 { name="hthgu133b.db"; version="3.2.2"; sha256="1vzhjqf5qh5j7wpgrl8p12b1fn6cy5nk643p1bq26cz3xr4r593a"; depends=[AnnotationDbi org_Hs_eg_db]; }; + hthgu133b_db = derive2 { name="hthgu133b.db"; version="3.2.3"; sha256="1iypcyzsiqria9svkiggjprscvriihp78rk6rwb9p2n58ij31axh"; depends=[AnnotationDbi org_Hs_eg_db]; }; hthgu133bcdf = derive2 { name="hthgu133bcdf"; version="2.18.0"; sha256="0v12g1xsmycxhapzl6i5m7jq683k05y9yaq1asxvwls0viph6dv0"; depends=[AnnotationDbi]; }; hthgu133bprobe = derive2 { name="hthgu133bprobe"; version="2.18.0"; sha256="1cqv6zwdxgc27x1h6y6lqzdysx40bbiy1ywcxky4yc611l1lxbv5"; depends=[AnnotationDbi]; }; hthgu133pluspmcdf = derive2 { name="hthgu133pluspmcdf"; version="2.18.0"; sha256="0bslylkmgrq9v1giz87kcikmxbs8yawpylxi0s1n6q4rcc2yg61y"; depends=[AnnotationDbi]; }; @@ -439,19 +460,19 @@ in with self; { htrat230pmprobe = derive2 { name="htrat230pmprobe"; version="2.18.0"; sha256="0xpyj6c8j4icx25yk570b4gnfqz8zrsp8wlsw8424xvkviz0wv4y"; depends=[AnnotationDbi]; }; htratfocuscdf = derive2 { name="htratfocuscdf"; version="2.18.0"; sha256="0jqn7y17sjn2cg8lidsbyzwpjygjs553gaw72g6v2kxj7j0fhfx9"; depends=[AnnotationDbi]; }; htratfocusprobe = derive2 { name="htratfocusprobe"; version="2.18.0"; sha256="1yxpb9pq4gbmq8s6szlbnc70ngqgi5gwqxx3far673gm5czdlfzi"; depends=[AnnotationDbi]; }; - hu35ksuba_db = derive2 { name="hu35ksuba.db"; version="3.2.2"; sha256="0bbqjazg7441bm7s5giax43w5zl4k6yrwaxjwwxz9rmkq1vqs1j7"; depends=[AnnotationDbi org_Hs_eg_db]; }; + hu35ksuba_db = derive2 { name="hu35ksuba.db"; version="3.2.3"; sha256="0cb7dki9j1j8q1d43b3943wnsja2y23dqfqdza3flc7wvrgiflds"; depends=[AnnotationDbi org_Hs_eg_db]; }; hu35ksubacdf = derive2 { name="hu35ksubacdf"; version="2.18.0"; sha256="1aw41anp99r0m0c54yibvh3nzswi5wnqv9z7dwi5396sd5sniy81"; depends=[AnnotationDbi]; }; hu35ksubaprobe = derive2 { name="hu35ksubaprobe"; version="2.18.0"; sha256="0dnsch3wdcgffbg1ypnnmsxlrclk9wji11skcs1gih2f7wi4pk05"; depends=[AnnotationDbi]; }; - hu35ksubb_db = derive2 { name="hu35ksubb.db"; version="3.2.2"; sha256="1gazpw4n0r4dmjvigljcci2wv656ccyvpsxczhhh43yfaskcxk55"; depends=[AnnotationDbi org_Hs_eg_db]; }; + hu35ksubb_db = derive2 { name="hu35ksubb.db"; version="3.2.3"; sha256="1h8vry8ydlzlg1f7n3viwhlgaid1c2a9kkip9qhnvnszw1zc5xjq"; depends=[AnnotationDbi org_Hs_eg_db]; }; hu35ksubbcdf = derive2 { name="hu35ksubbcdf"; version="2.18.0"; sha256="0anzhbn7ad5yv3qd4vwxaag809yb9saqwx6575iwc9ha5w8hwv2m"; depends=[AnnotationDbi]; }; hu35ksubbprobe = derive2 { name="hu35ksubbprobe"; version="2.18.0"; sha256="0wml8g7nizljjfxq6xbbld3b2lsl1p8rzdmdqg5h81ncg7xhxy7c"; depends=[AnnotationDbi]; }; - hu35ksubc_db = derive2 { name="hu35ksubc.db"; version="3.2.2"; sha256="0xnhaqvgs0rdvn9prxkq2hi7wxb6z05446dlh2b365dsmvy87pwr"; depends=[AnnotationDbi org_Hs_eg_db]; }; + hu35ksubc_db = derive2 { name="hu35ksubc.db"; version="3.2.3"; sha256="1hq2p8lall1yzm061f8arykgg3a2x31rn5hfkhwzxhs0jxdispah"; depends=[AnnotationDbi org_Hs_eg_db]; }; hu35ksubccdf = derive2 { name="hu35ksubccdf"; version="2.18.0"; sha256="0fycaw7sngcj50qh8vw594g7i0fw9nmfh1lw72bc3i8jd5y08npi"; depends=[AnnotationDbi]; }; hu35ksubcprobe = derive2 { name="hu35ksubcprobe"; version="2.18.0"; sha256="1s22447qznyrlwpa98wric7xv2aj1qchd5wgq1zgwhg3gcj9lvmb"; depends=[AnnotationDbi]; }; - hu35ksubd_db = derive2 { name="hu35ksubd.db"; version="3.2.2"; sha256="0af1dr9mqxkl8jkpbm9f6ifs7xrzjsrsv57sxfcm55h3p12fdw7n"; depends=[AnnotationDbi org_Hs_eg_db]; }; + hu35ksubd_db = derive2 { name="hu35ksubd.db"; version="3.2.3"; sha256="0jp5mpvg0amxkbxla2p81a3zvdamzypgplf6dh246ak3wl9pdxai"; depends=[AnnotationDbi org_Hs_eg_db]; }; hu35ksubdcdf = derive2 { name="hu35ksubdcdf"; version="2.18.0"; sha256="1ws1mfgi1bndlwhr049bssj6cmd819klp1vwnqppklggs081y22v"; depends=[AnnotationDbi]; }; hu35ksubdprobe = derive2 { name="hu35ksubdprobe"; version="2.18.0"; sha256="1vivxdpg6wn29jwfnw7brcqav1xbr62llqk13dgj10x0gvjmv26w"; depends=[AnnotationDbi]; }; - hu6800_db = derive2 { name="hu6800.db"; version="3.2.2"; sha256="1dsjs3km0qr1y49r0m2vl04jqlcgnywvcv1kayn8i04rg568zsy4"; depends=[AnnotationDbi org_Hs_eg_db]; }; + hu6800_db = derive2 { name="hu6800.db"; version="3.2.3"; sha256="05v13rllfzjg2p35r21d58qxvcxg37ywpvr4ng23bvkrr0qrbx64"; depends=[AnnotationDbi org_Hs_eg_db]; }; hu6800cdf = derive2 { name="hu6800cdf"; version="2.18.0"; sha256="1anddmc7j8x79nrglzmyzdvpwhy8aq6b87hqh7gr40g3d6hxjg06"; depends=[AnnotationDbi]; }; hu6800probe = derive2 { name="hu6800probe"; version="2.18.0"; sha256="1fnkwifpzv0rkb9f5b789f2r5vvz9riwiip5wmyanw2gzdyc2vr0"; depends=[AnnotationDbi]; }; hu6800subacdf = derive2 { name="hu6800subacdf"; version="2.18.0"; sha256="0ckywgdz9n9xz162jw6phj3qwdkiwjb4ya86a3imgb71k3w181wz"; depends=[AnnotationDbi]; }; @@ -472,7 +493,7 @@ in with self; { hugene20sttranscriptcluster_db = derive2 { name="hugene20sttranscriptcluster.db"; version="8.4.0"; sha256="16ynwlnl5qkf3in7b08lf8k5v1q0sr0zd2hl52pl8yvpqxsm7sdz"; depends=[AnnotationDbi org_Hs_eg_db]; }; hugene21stprobeset_db = derive2 { name="hugene21stprobeset.db"; version="8.4.0"; sha256="07cza2h7r0ipc4c3z14gw2vca4zqx2l0s41hz5fj0g6ss2a7n2qj"; depends=[AnnotationDbi org_Hs_eg_db]; }; hugene21sttranscriptcluster_db = derive2 { name="hugene21sttranscriptcluster.db"; version="8.4.0"; sha256="1xqwq17xvmfbhy89di2gwg8c7r52ihp50qckqiqi0qdv5w59vbfj"; depends=[AnnotationDbi org_Hs_eg_db]; }; - human_db0 = derive2 { name="human.db0"; version="3.2.4"; sha256="0yblrj9p4pihxdhgh649dlciwqhx7538ni4mk02wkrk66h3n6cpc"; depends=[AnnotationDbi]; }; + human_db0 = derive2 { name="human.db0"; version="3.3.0"; sha256="18kfi5g4v2d15dkkn4nrm14cqaz47ihaj2w4c2bazq0qcyc4iy34"; depends=[AnnotationDbi]; }; human1mduov3bCrlmm = derive2 { name="human1mduov3bCrlmm"; version="1.0.4"; sha256="1p7qpzk6svafgdafljhh4k0z7pcs78qmwwfd80r0a1yhkssmp0v9"; depends=[]; }; human1mv1cCrlmm = derive2 { name="human1mv1cCrlmm"; version="1.0.3"; sha256="1qlph3qrjv52ddzlj8pwa93zzh70x4mbdrdr7q9pan427lpck9gx"; depends=[]; }; human370quadv3cCrlmm = derive2 { name="human370quadv3cCrlmm"; version="1.0.3"; sha256="1chjx9vsmqz2whslw1l7jn7nfn7zx6pcjfmqqm9mh81i74rzrdik"; depends=[]; }; @@ -499,9 +520,9 @@ in with self; { illuminaMousev1p1_db = derive2 { name="illuminaMousev1p1.db"; version="1.26.0"; sha256="1sxqwrc3697361jp69xy9g8w5a699ifjvldqi9ks538h5yc157z1"; depends=[AnnotationDbi org_Mm_eg_db]; }; illuminaMousev2_db = derive2 { name="illuminaMousev2.db"; version="1.26.0"; sha256="0vwi309ymhrbpa9dyk0fwqy7bfwvvp67q39xjav1s9npi3slv1h3"; depends=[AnnotationDbi org_Mm_eg_db]; }; illuminaRatv1_db = derive2 { name="illuminaRatv1.db"; version="1.26.0"; sha256="1krpp3pb3h2nrk5jrx54a3v6473qsjnz5wksysy8p4zpisvnxyfb"; depends=[AnnotationDbi org_Rn_eg_db]; }; - indac_db = derive2 { name="indac.db"; version="3.2.2"; sha256="0zyfhq93csg0m58rfvgk42mdczhqgsbmazclcvnm405dka64p18c"; depends=[AnnotationDbi org_Dm_eg_db]; }; + indac_db = derive2 { name="indac.db"; version="3.2.3"; sha256="0jjkiyhjcjgk9888a96g5w80k8a652cww5dhidbdiq5d8gakbnji"; depends=[AnnotationDbi org_Dm_eg_db]; }; lumiHumanAll_db = derive2 { name="lumiHumanAll.db"; version="1.22.0"; sha256="0kn2m31b4q8r1lm4iwda9i62la4akj0c35pi3khbfvkmdrvbvhd2"; depends=[AnnotationDbi org_Hs_eg_db]; }; - lumiHumanIDMapping = derive2 { name="lumiHumanIDMapping"; version="1.10.0"; sha256="0xm58dggm2m3mb13v8avvji3prgbdxp7jd3lw7xj6hrnw2mghgg6"; depends=[AnnotationDbi lumi]; }; + lumiHumanIDMapping = derive2 { name="lumiHumanIDMapping"; version="1.10.1"; sha256="0j29cd01z840jg4zq0yczjsqnya1vpx6hajqdq96msiy4i5fj534"; depends=[AnnotationDbi DBI lumi]; }; lumiMouseAll_db = derive2 { name="lumiMouseAll.db"; version="1.22.0"; sha256="00iawk8wb1hnvmy898nl9hc85rfzzwi34lpnv2d37rw4wdn57z33"; depends=[AnnotationDbi org_Mm_eg_db]; }; lumiMouseIDMapping = derive2 { name="lumiMouseIDMapping"; version="1.10.0"; sha256="18mc7vwp2p53ns2paa4glj570shmbq9lk318g3p9nl09mxyadim9"; depends=[AnnotationDbi lumi]; }; lumiRatAll_db = derive2 { name="lumiRatAll.db"; version="1.22.0"; sha256="1yh0q8aw33xsn4phj04v0mhjn8xh3z06jrg7yfi9qz1c985z1gw6"; depends=[AnnotationDbi org_Rn_eg_db]; }; @@ -510,33 +531,34 @@ in with self; { m20kcod_db = derive2 { name="m20kcod.db"; version="3.4.0"; sha256="1p2sm5j4b50iqzwcb984qrh74c3hf6yml7b8mvxlhhhvxz4iy1np"; depends=[AnnotationDbi org_Mm_eg_db]; }; maizecdf = derive2 { name="maizecdf"; version="2.18.0"; sha256="0yfz5gjhsq4wz6j63s1b1hxjz03gsmrlfs2cdc8smq6azp3zdid4"; depends=[AnnotationDbi]; }; maizeprobe = derive2 { name="maizeprobe"; version="2.18.0"; sha256="01h5dv5i0zaqlphkii9ipxy9wswv1srgprrpr5vmi01c9d98qsk0"; depends=[AnnotationDbi]; }; - malaria_db0 = derive2 { name="malaria.db0"; version="3.2.3"; sha256="0rgpifbwfk33h24i4a79968ppfnhfjqn4yfjrdnrzblmyysx9662"; depends=[AnnotationDbi]; }; + malaria_db0 = derive2 { name="malaria.db0"; version="3.3.0"; sha256="17s27vzxlpzrz8hy9z91fl2azbg82519fy5j2mzrk3h6429v7289"; depends=[AnnotationDbi]; }; medicagocdf = derive2 { name="medicagocdf"; version="2.18.0"; sha256="1clz679cc887x98c6jk93cphijkbg5r2nd9idrj5901yvh6p9n5q"; depends=[AnnotationDbi]; }; medicagoprobe = derive2 { name="medicagoprobe"; version="2.18.0"; sha256="0w6j1pfkvb3npc8srpjifq2ywnqxhc9q090jqzmkx22x36cw9cl5"; depends=[AnnotationDbi]; }; - mgu74a_db = derive2 { name="mgu74a.db"; version="3.2.2"; sha256="0p19wmdsxqvg5drgdkldnym2p44hyyqpzg8qrzc9d40r4dgdqhi5"; depends=[AnnotationDbi org_Mm_eg_db]; }; + mgu74a_db = derive2 { name="mgu74a.db"; version="3.2.3"; sha256="0xd2gbvry061409kiwq99i13641g8x6m9kbgg4yr0x6m9dh7hxa8"; depends=[AnnotationDbi org_Mm_eg_db]; }; mgu74acdf = derive2 { name="mgu74acdf"; version="2.18.0"; sha256="187k8y1dnnyw926h090gmkk1081sa91fn113lysll3460dqn3ylg"; depends=[AnnotationDbi]; }; mgu74aprobe = derive2 { name="mgu74aprobe"; version="2.18.0"; sha256="0813s2w5s9ahaqn91mkwzfckclv5jdphq17j2qwyzd4xqyxrmsbi"; depends=[AnnotationDbi]; }; - mgu74av2_db = derive2 { name="mgu74av2.db"; version="3.2.2"; sha256="12zn0wpbzx8bylfpwkfdmjrq8k80phgkv4408ria85vfv7bfakk2"; depends=[AnnotationDbi org_Mm_eg_db]; }; + mgu74av2_db = derive2 { name="mgu74av2.db"; version="3.2.3"; sha256="0680qygyrpr15yhs7r3670xl3a8v4jy1qxfqfyxnpp7h8z3kj6jd"; depends=[AnnotationDbi org_Mm_eg_db]; }; mgu74av2cdf = derive2 { name="mgu74av2cdf"; version="2.18.0"; sha256="1cw5q8vkmd80g0dxv38qdki39h255bssf27yf0lf0jig9ra5w34n"; depends=[AnnotationDbi]; }; mgu74av2probe = derive2 { name="mgu74av2probe"; version="2.18.0"; sha256="02wf1xymaxd3hfyrbwxfw12klzf5c28md0h45rf41vzia0mkvr2z"; depends=[AnnotationDbi]; }; - mgu74b_db = derive2 { name="mgu74b.db"; version="3.2.2"; sha256="0r64azjrahdigmgi08qnrcr2m01byp0ggdpbc95a88wvs82zkznb"; depends=[AnnotationDbi org_Mm_eg_db]; }; + mgu74b_db = derive2 { name="mgu74b.db"; version="3.2.3"; sha256="0z98k0f9ycha48jb56lda25rnjlayz7z6jr8icqabhp5sbh95kgh"; depends=[AnnotationDbi org_Mm_eg_db]; }; mgu74bcdf = derive2 { name="mgu74bcdf"; version="2.18.0"; sha256="0sivgn6srmak7k6p8sj382lsanc34xj5b6182ggnp872y8v6zx5b"; depends=[AnnotationDbi]; }; mgu74bprobe = derive2 { name="mgu74bprobe"; version="2.18.0"; sha256="0igrdbp2hmn550rcfvrscmvykbpm9sbnfa29walv1v57jy6wl7fl"; depends=[AnnotationDbi]; }; - mgu74bv2_db = derive2 { name="mgu74bv2.db"; version="3.2.2"; sha256="05k89p1wja6y7wjkivq6iwczmq60nm7jk51khksv8204a0vqzlgp"; depends=[AnnotationDbi org_Mm_eg_db]; }; + mgu74bv2_db = derive2 { name="mgu74bv2.db"; version="3.2.3"; sha256="0pzn86xmfv8yigk5fi1lf4zpg8a1bsqnm4x6jv6pasivs5lmpyya"; depends=[AnnotationDbi org_Mm_eg_db]; }; mgu74bv2cdf = derive2 { name="mgu74bv2cdf"; version="2.18.0"; sha256="05w0dh194lncda9qdkmg52znjrnlnjc15fzplw147nyablq5m109"; depends=[AnnotationDbi]; }; mgu74bv2probe = derive2 { name="mgu74bv2probe"; version="2.18.0"; sha256="1kn4549s0kj0jpg7yx4lkc8gvxdfm7p21b6yy52ymhfgbv431sl6"; depends=[AnnotationDbi]; }; - mgu74c_db = derive2 { name="mgu74c.db"; version="3.2.2"; sha256="1hsrvppcapjsdny1n9c2bx72zbn65c09dhfxaclglxdfiq9mlfj6"; depends=[AnnotationDbi org_Mm_eg_db]; }; + mgu74c_db = derive2 { name="mgu74c.db"; version="3.2.3"; sha256="10ba6lz5f2c3mqajrak0yl2c76lswx267jgmdhq3d3322cfd6n2y"; depends=[AnnotationDbi org_Mm_eg_db]; }; mgu74ccdf = derive2 { name="mgu74ccdf"; version="2.18.0"; sha256="01dbsxmv7r1r2n348gcdpkxqmciqyrf3s0handp3hl33s6pd8xbj"; depends=[AnnotationDbi]; }; mgu74cprobe = derive2 { name="mgu74cprobe"; version="2.18.0"; sha256="0ib5iyyp6mms5cszarczs82y2779d3cssz7hih1wm0vddbby40km"; depends=[AnnotationDbi]; }; - mgu74cv2_db = derive2 { name="mgu74cv2.db"; version="3.2.2"; sha256="0yxpcicqm1gj8mkbifmk773l7dp4256m3ms7qn6h13i13qximkqw"; depends=[AnnotationDbi org_Mm_eg_db]; }; + mgu74cv2_db = derive2 { name="mgu74cv2.db"; version="3.2.3"; sha256="131vj9z1hdhk86mgbay9rldw5czfpr7ag3fh58anrhdijkcyshcq"; depends=[AnnotationDbi org_Mm_eg_db]; }; mgu74cv2cdf = derive2 { name="mgu74cv2cdf"; version="2.18.0"; sha256="18k1kahfwix3cs6kh2aml2mi39l3vjr526ajksljjk46n0bsf1r2"; depends=[AnnotationDbi]; }; mgu74cv2probe = derive2 { name="mgu74cv2probe"; version="2.18.0"; sha256="0rx2cigsi4bnm48vl0bbfh6k3k3cs8nv0x7k7j9vq5z9dniyzqf6"; depends=[AnnotationDbi]; }; - mguatlas5k_db = derive2 { name="mguatlas5k.db"; version="3.2.2"; sha256="1pdz7c6z9c6zwwrkl2jbf8cpf5yi0gs68fa0rmf7hs51p89qp7dw"; depends=[AnnotationDbi org_Mm_eg_db]; }; - mgug4104a_db = derive2 { name="mgug4104a.db"; version="3.2.2"; sha256="0idqd6w17qjc2krlbv58x63cpdan7w9vviaciy1kmmxg03dqcz2z"; depends=[AnnotationDbi org_Mm_eg_db]; }; - mgug4120a_db = derive2 { name="mgug4120a.db"; version="3.2.2"; sha256="01nc39c3kv8rhw4fdwa5b9sa2fhp6hm155kf3sjr1ylas1y5ycf4"; depends=[AnnotationDbi org_Mm_eg_db]; }; - mgug4121a_db = derive2 { name="mgug4121a.db"; version="3.2.2"; sha256="1avgvryyyqbghjwk3kiy86dbpn5p6kcdx8h1b3dxzscbyd4s6z1s"; depends=[AnnotationDbi org_Mm_eg_db]; }; - mgug4122a_db = derive2 { name="mgug4122a.db"; version="3.2.2"; sha256="0cg0jg9kmly3kma79aljqxmldjqk35vcjx8yd2hkkip895xlkkcl"; depends=[AnnotationDbi org_Mm_eg_db]; }; + mguatlas5k_db = derive2 { name="mguatlas5k.db"; version="3.2.3"; sha256="08lw02r9wpc06pq82934dlfsrjjsaqchrsyghc8pgk6iqq1c3f9r"; depends=[AnnotationDbi org_Mm_eg_db]; }; + mgug4104a_db = derive2 { name="mgug4104a.db"; version="3.2.3"; sha256="1aqs943lff3q1g2dfl9cyxfpm8swkjcb4spi5drgw39g9m8p3dp8"; depends=[AnnotationDbi org_Mm_eg_db]; }; + mgug4120a_db = derive2 { name="mgug4120a.db"; version="3.2.3"; sha256="1qnzpww4wy926j4i10rfddng8ygav86ig9c301qwvw0ly235f0vx"; depends=[AnnotationDbi org_Mm_eg_db]; }; + mgug4121a_db = derive2 { name="mgug4121a.db"; version="3.2.3"; sha256="0947crjk8nj4bzgwz7anran7y2qhd1v8bp9f59ja3628rgjx6cz5"; depends=[AnnotationDbi org_Mm_eg_db]; }; + mgug4122a_db = derive2 { name="mgug4122a.db"; version="3.2.3"; sha256="0x4mrjqd9wnppkp757f3azllbjiilxfds3cpbcrfsi07l8lf4mxx"; depends=[AnnotationDbi org_Mm_eg_db]; }; mi16cod_db = derive2 { name="mi16cod.db"; version="3.4.0"; sha256="1v64plvn173hdvjyy491qh2wd4mgbpwr27iq7lab9b3w1g3b1a82"; depends=[AnnotationDbi org_Mm_eg_db]; }; + miRBaseVersions_db = derive2 { name="miRBaseVersions.db"; version="0.99.5"; sha256="0cxkxy42ybnls6396m4svm4iiw0x29fgg98dfwpgwfv5np85m0vh"; depends=[AnnotationDbi DBI gtools RSQLite]; }; miRNAtap_db = derive2 { name="miRNAtap.db"; version="0.99.7"; sha256="0h7s83cqr8xwypizdhkgx4nl4pxbr3lhnjwgnwcdibrpq3mbq5cj"; depends=[AnnotationDbi DBI miRNAtap RSQLite]; }; mirbase_db = derive2 { name="mirbase.db"; version="1.2.0"; sha256="0l7ah1ia7q1h16av2v1qa9nqpr0604z5dlrq37kd0aiz8dcxyddk"; depends=[AnnotationDbi]; }; mirna102xgaincdf = derive2 { name="mirna102xgaincdf"; version="2.18.0"; sha256="03q71dq6b0plivj5bgpgx0pnqdwfgplakyk5ggj4w7kqwmr5k17i"; depends=[AnnotationDbi]; }; @@ -544,10 +566,10 @@ in with self; { mirna10probe = derive2 { name="mirna10probe"; version="2.18.0"; sha256="0f6jfzmj9h4g60lnkdi65grl3ncn19qnrwcxsdhqgiw3ll19cbj7"; depends=[AnnotationDbi]; }; mirna20cdf = derive2 { name="mirna20cdf"; version="2.18.0"; sha256="05yvi7jibj8fiak7z03gjv07xagpda3gy19namyy4iiq3w7ya2fj"; depends=[AnnotationDbi]; }; mm24kresogen_db = derive2 { name="mm24kresogen.db"; version="2.5.0"; sha256="0kf9cilhfpfl9cws1b08ic11fnqscdvbja4m16sm4xjyfd2kskfp"; depends=[AnnotationDbi org_Mm_eg_db]; }; - moe430a_db = derive2 { name="moe430a.db"; version="3.2.2"; sha256="14yfpv2ilpw1g4yq1y4bl35x61ldz3lb7m2g95a56fs4cn3149pn"; depends=[AnnotationDbi org_Mm_eg_db]; }; + moe430a_db = derive2 { name="moe430a.db"; version="3.2.3"; sha256="1j9ss80ndy4z3r7cszdkxsadhwj3avxrfp198kg156gsylcskpjn"; depends=[AnnotationDbi org_Mm_eg_db]; }; moe430acdf = derive2 { name="moe430acdf"; version="2.18.0"; sha256="0n4dc2racw68nmfz6arl7f0yh9f3mlkvilsl694zrxw2ysbq1d70"; depends=[AnnotationDbi]; }; moe430aprobe = derive2 { name="moe430aprobe"; version="2.18.0"; sha256="1paiwgjzlq4c04wy8fpnnxj7n5asiw6z2mz0rjrifja9lgyilq50"; depends=[AnnotationDbi]; }; - moe430b_db = derive2 { name="moe430b.db"; version="3.2.2"; sha256="03wdfg0n66p8q0g1y75zs8aw3gyi756c1ghcw1d4i49qa8h986bq"; depends=[AnnotationDbi org_Mm_eg_db]; }; + moe430b_db = derive2 { name="moe430b.db"; version="3.2.3"; sha256="0hb6pa07j5hdirpprcm9vdszbh5bkgf38gyp3g0gqvlc32nklv58"; depends=[AnnotationDbi org_Mm_eg_db]; }; moe430bcdf = derive2 { name="moe430bcdf"; version="2.18.0"; sha256="0yl5pkqj37188k2yvvsqhnhm2vx523r11sry976bwzcadlicfhvb"; depends=[AnnotationDbi]; }; moe430bprobe = derive2 { name="moe430bprobe"; version="2.18.0"; sha256="1nziw3pj4picz0aazblpqkbw82wq3vdajh9i78yfvlz1bwb2vpfi"; depends=[AnnotationDbi]; }; moex10stprobeset_db = derive2 { name="moex10stprobeset.db"; version="8.4.0"; sha256="0f7xxq0n5c5cp9axaxjmi9dhqfznjiifj98yxz1cgzkihgw7fwry"; depends=[AnnotationDbi org_Mm_eg_db]; }; @@ -563,30 +585,30 @@ in with self; { mogene20sttranscriptcluster_db = derive2 { name="mogene20sttranscriptcluster.db"; version="8.4.0"; sha256="0sbms5rld5x53cjk5yaxl9j37kni37j9drar4a1b94s6cxsh0ydf"; depends=[AnnotationDbi org_Mm_eg_db]; }; mogene21stprobeset_db = derive2 { name="mogene21stprobeset.db"; version="8.4.0"; sha256="1nbvq5v114ziqjiijxjji703c30h8fv7f1qvzj1bgr5cssv60bbl"; depends=[AnnotationDbi org_Mm_eg_db]; }; mogene21sttranscriptcluster_db = derive2 { name="mogene21sttranscriptcluster.db"; version="8.4.0"; sha256="111b5pvq4l25wghys2ba9f1g8n5d4y8dqvzi7iivdx17jy61jqm7"; depends=[AnnotationDbi org_Mm_eg_db]; }; - mouse_db0 = derive2 { name="mouse.db0"; version="3.2.4"; sha256="0d0fnn7x9y479sglnjdc0kd5ldv8bgq3d9dd2qy7cw67z1dn7wsv"; depends=[AnnotationDbi]; }; - mouse4302_db = derive2 { name="mouse4302.db"; version="3.2.2"; sha256="0xyzawc9ngwp1z9yzqybq4ywwyngk0c0blkkf5s40jypd77w79pq"; depends=[AnnotationDbi org_Mm_eg_db]; }; + mouse_db0 = derive2 { name="mouse.db0"; version="3.3.0"; sha256="13vm1zi33glpkc0sl166gni542825f1pnbj2qqh5yqlp6i00whxf"; depends=[AnnotationDbi]; }; + mouse4302_db = derive2 { name="mouse4302.db"; version="3.2.3"; sha256="1wdgqawqzkr39xwl32cap4ksr59p7r7i83g82h1ss4q3lm58gxpm"; depends=[AnnotationDbi org_Mm_eg_db]; }; mouse4302cdf = derive2 { name="mouse4302cdf"; version="2.18.0"; sha256="1mpyma4x8zfs2fmmx57xw4cfs2cf9lhw71nc3icl72d7vmwidswc"; depends=[AnnotationDbi]; }; mouse4302frmavecs = derive2 { name="mouse4302frmavecs"; version="1.5.0"; sha256="04clwkfz1gqqwrnqbavkka3hv480w6vi6c4q947qqnhw8j5jjp7s"; depends=[]; }; mouse4302probe = derive2 { name="mouse4302probe"; version="2.18.0"; sha256="11mn9j98m3xfk5sn9cb2r92zckm6acplc66c5xn44nazf29pf9n1"; depends=[AnnotationDbi]; }; - mouse430a2_db = derive2 { name="mouse430a2.db"; version="3.2.2"; sha256="05mi6gxf4pzvl4rcdfxndykzx3563wq4kadhwc5k4zw9g34fllvm"; depends=[AnnotationDbi org_Mm_eg_db]; }; + mouse430a2_db = derive2 { name="mouse430a2.db"; version="3.2.3"; sha256="15ikbwb4sv1nlc1is6zx959wamha0v7k21gdkmfjarjq3g0ydng8"; depends=[AnnotationDbi org_Mm_eg_db]; }; mouse430a2cdf = derive2 { name="mouse430a2cdf"; version="2.18.0"; sha256="0530znylp4xqld8kak84d6lnc8r62p413d4kkn4j99kmmvx3l9rn"; depends=[AnnotationDbi]; }; mouse430a2frmavecs = derive2 { name="mouse430a2frmavecs"; version="1.3.0"; sha256="0bb9fqz4kkw78dw9mbkn1pp6wp7lmyqpcg8gdjg9j9aichbqbnh8"; depends=[]; }; mouse430a2probe = derive2 { name="mouse430a2probe"; version="2.18.0"; sha256="1f7a6mvcpv57h7kfj1qzkcwh7mdl2w9z6ysmrgan9037rd0652sz"; depends=[AnnotationDbi]; }; mouseCHRLOC = derive2 { name="mouseCHRLOC"; version="2.1.6"; sha256="0xylgnz43xmjnqdwv7pn034wfs61va21lvcpn9igdik2s42ykpp2"; depends=[]; }; - mpedbarray_db = derive2 { name="mpedbarray.db"; version="3.2.2"; sha256="085cg6ap0j7inx5f1vzprlddhpv173sx8886b81fjlx2gq2f440q"; depends=[AnnotationDbi org_Mm_eg_db]; }; + mpedbarray_db = derive2 { name="mpedbarray.db"; version="3.2.3"; sha256="04pwchivzb19awnnqr9an0nl49rgdva58ip1fkgbavp3vlirxv4i"; depends=[AnnotationDbi org_Mm_eg_db]; }; mta10stprobeset_db = derive2 { name="mta10stprobeset.db"; version="8.4.0"; sha256="1chc4ld5g8dmy33vrvprx08yp2vasmr4x6m8bswhfyigzf6n3d6w"; depends=[AnnotationDbi org_Mm_eg_db]; }; mta10sttranscriptcluster_db = derive2 { name="mta10sttranscriptcluster.db"; version="8.4.0"; sha256="0f890nbnc27hnfazdyyypb3k6sla1ipijb8fvfqfld40nm1is978"; depends=[AnnotationDbi org_Mm_eg_db]; }; - mu11ksuba_db = derive2 { name="mu11ksuba.db"; version="3.2.2"; sha256="129zyknqp60whd6g5z85vknjx1h9rv1mdiwbr63rmb2blwcqnl64"; depends=[AnnotationDbi org_Mm_eg_db]; }; + mu11ksuba_db = derive2 { name="mu11ksuba.db"; version="3.2.3"; sha256="188ld7awcgrbqxkwqyr98739x4ihmcawv3lv2ybrc0khqifylzj3"; depends=[AnnotationDbi org_Mm_eg_db]; }; mu11ksubacdf = derive2 { name="mu11ksubacdf"; version="2.18.0"; sha256="09xm3ah3zlssclblx663rlwrnmx3niabd5nf7zf7krhbpgcwhyim"; depends=[AnnotationDbi]; }; mu11ksubaprobe = derive2 { name="mu11ksubaprobe"; version="2.18.0"; sha256="1p3kc06h83ivh06a8qqcbpgbsbdfp9nnwvqfxr6d1gdn15qcp96k"; depends=[AnnotationDbi]; }; - mu11ksubb_db = derive2 { name="mu11ksubb.db"; version="3.2.2"; sha256="0dvajwxbna4q7jd7frrfwnj34mx3gz26b1fkv7a55adsgicfjsad"; depends=[AnnotationDbi org_Mm_eg_db]; }; + mu11ksubb_db = derive2 { name="mu11ksubb.db"; version="3.2.3"; sha256="1ld2nbxxaz0vnq2gj1sv0qbgcrjg9959885y3l2wciszrs5nx3r2"; depends=[AnnotationDbi org_Mm_eg_db]; }; mu11ksubbcdf = derive2 { name="mu11ksubbcdf"; version="2.18.0"; sha256="1dajsq041pg3g9c5j3sd0w6gypqpdva91rb4a7ni990nk45mg23k"; depends=[AnnotationDbi]; }; mu11ksubbprobe = derive2 { name="mu11ksubbprobe"; version="2.18.0"; sha256="139kbrlxlw0r4z2iyy4qqcc70sb6nmsn0h7v33k5j6r52qz4hjxh"; depends=[AnnotationDbi]; }; - mu19ksuba_db = derive2 { name="mu19ksuba.db"; version="3.2.2"; sha256="1j2j5hdbhzmys464i35xxws0kkl5fz6ppl8c8win03a8wbkxvadx"; depends=[AnnotationDbi org_Mm_eg_db]; }; + mu19ksuba_db = derive2 { name="mu19ksuba.db"; version="3.2.3"; sha256="1vivbv7ng58n1r2g5w5xrwml9jvfhb4v6qp9n4hi9y77526hm6sq"; depends=[AnnotationDbi org_Mm_eg_db]; }; mu19ksubacdf = derive2 { name="mu19ksubacdf"; version="2.18.0"; sha256="0c1nhvnnn8v07m6rci2cml6i86rs77b1xnw7jmyndfl458vjlp09"; depends=[AnnotationDbi]; }; - mu19ksubb_db = derive2 { name="mu19ksubb.db"; version="3.2.2"; sha256="1l4ayfl6y3d3nsdnp05kzm3f0fqaa92ayvnnp0wd1idnp5r02dq5"; depends=[AnnotationDbi org_Mm_eg_db]; }; + mu19ksubb_db = derive2 { name="mu19ksubb.db"; version="3.2.3"; sha256="1p5x8gl17nhynwm96ah20rpbj21n8l856bivy5slyn795vzy15sw"; depends=[AnnotationDbi org_Mm_eg_db]; }; mu19ksubbcdf = derive2 { name="mu19ksubbcdf"; version="2.18.0"; sha256="1waizab2dn74y8b1w27l1yg29gi00v16fij1jm2yhik5cnjhhhk4"; depends=[AnnotationDbi]; }; - mu19ksubc_db = derive2 { name="mu19ksubc.db"; version="3.2.2"; sha256="1fsmkx29vki1g9jcd1hvjil90dhsl5yrxslil4z7xwlvcbzxsjp9"; depends=[AnnotationDbi org_Mm_eg_db]; }; + mu19ksubc_db = derive2 { name="mu19ksubc.db"; version="3.2.3"; sha256="087ib49c61q2yrpqdhkgzcjmrv88wdwzzws67anx8bia97ck9zhz"; depends=[AnnotationDbi org_Mm_eg_db]; }; mu19ksubccdf = derive2 { name="mu19ksubccdf"; version="2.18.0"; sha256="063v3fn06p1znwrdxn26lz7qz9sfzk10hgabimxw3rz5x0580d4l"; depends=[AnnotationDbi]; }; mu6500subacdf = derive2 { name="mu6500subacdf"; version="2.18.0"; sha256="15y7x1jgzzc366dapa5gy44m98zpn8mfghjxh12k3k9ryd59lxn9"; depends=[AnnotationDbi]; }; mu6500subbcdf = derive2 { name="mu6500subbcdf"; version="2.18.0"; sha256="0a0w5yldgjvj8pyw7ygn685pj95qdfm34c0sqvgqf7w7g5wm4jvk"; depends=[AnnotationDbi]; }; @@ -600,28 +622,28 @@ in with self; { nugomm1a520177cdf = derive2 { name="nugomm1a520177cdf"; version="3.4.0"; sha256="0skd5b76si0vydzk5qhg4f1a1j655alxflm9sqci8fi8safwj96a"; depends=[AnnotationDbi]; }; nugomm1a520177probe = derive2 { name="nugomm1a520177probe"; version="3.4.0"; sha256="1n70k0mhv146983myjgk1cgkr9rmmcpqdv8wpkcr320qcvgf9bn7"; depends=[AnnotationDbi]; }; oligoData = derive2 { name="oligoData"; version="1.8.0"; sha256="1d1yfms3jv2c4s255xnh8yxwijrj35skw3nxds7l46y88lg3qn8y"; depends=[oligo]; }; - org_Ag_eg_db = derive2 { name="org.Ag.eg.db"; version="3.2.3"; sha256="1zsh3bhnfczihl1bdn7f67bnyf0nm5fbxqxnk34wr4a6c09sb7v3"; depends=[AnnotationDbi]; }; - org_At_tair_db = derive2 { name="org.At.tair.db"; version="3.2.3"; sha256="15im5iv1ba5aqya4r6xjji1yvavklia5m6vam15vi5wniqmmjdr3"; depends=[AnnotationDbi]; }; - org_Bt_eg_db = derive2 { name="org.Bt.eg.db"; version="3.2.3"; sha256="0q0lhhx3ffzn32k34bwn4sq7ssjrbszjz5d0nyvw3jqn50fiqs6n"; depends=[AnnotationDbi]; }; - org_Ce_eg_db = derive2 { name="org.Ce.eg.db"; version="3.2.3"; sha256="1d0lx00ybq34yqs6mziaa0lrh77xm0ggsmi76g6k95f77gi7m1sw"; depends=[AnnotationDbi]; }; - org_Cf_eg_db = derive2 { name="org.Cf.eg.db"; version="3.2.3"; sha256="0a4aiwj1vxjciqqdyc7zmkzk2yxfrp6450hpv8qigb8k3y2l26in"; depends=[AnnotationDbi]; }; - org_Dm_eg_db = derive2 { name="org.Dm.eg.db"; version="3.2.3"; sha256="0mib46c7nr00l7mh290n383za9hyl91a1dc6jhjbk884jmxaxyz6"; depends=[AnnotationDbi]; }; - org_Dr_eg_db = derive2 { name="org.Dr.eg.db"; version="3.2.3"; sha256="18l8nh6lhprv5l1z3f5nrn6ilbpairmhq5vzql5jp1hs3b3vdnz5"; depends=[AnnotationDbi]; }; - org_EcK12_eg_db = derive2 { name="org.EcK12.eg.db"; version="3.2.3"; sha256="1h11402sg4whsp6xv6ys7yfllhddd1k9cq3q6kgs0c9qr69yx67p"; depends=[AnnotationDbi]; }; - org_EcSakai_eg_db = derive2 { name="org.EcSakai.eg.db"; version="3.2.3"; sha256="0bdg5k7j8lmr2pqkiz83w5ckk4vddk9kqjlfq0w5igfs6ilr5d4a"; depends=[AnnotationDbi]; }; - org_Gg_eg_db = derive2 { name="org.Gg.eg.db"; version="3.2.3"; sha256="1bfhksa7vrdfxqq2yl7a2hsg37qzj8vmaaf1g7vxjk89r3ib6fmq"; depends=[AnnotationDbi]; }; - org_Hs_eg_db = derive2 { name="org.Hs.eg.db"; version="3.2.3"; sha256="0xicgkbh6xkvs74s1piafqac63dyz2ycdyil4pj4ghhxx2sabm6p"; depends=[AnnotationDbi]; }; + org_Ag_eg_db = derive2 { name="org.Ag.eg.db"; version="3.3.0"; sha256="0fsjivcmwdfhvq45dikfgpni7725snncrv33pbird09hwy6n10vc"; depends=[AnnotationDbi]; }; + org_At_tair_db = derive2 { name="org.At.tair.db"; version="3.3.0"; sha256="1fhv5kvwwjfgnrrynala7bnjv0sxzr9isp32vhgx0gazl5krzyh7"; depends=[AnnotationDbi]; }; + org_Bt_eg_db = derive2 { name="org.Bt.eg.db"; version="3.3.0"; sha256="0sl6kxkdisss5y0c50n9f3ccbbk4kdwj1afkkqr3aay75fzm78hs"; depends=[AnnotationDbi]; }; + org_Ce_eg_db = derive2 { name="org.Ce.eg.db"; version="3.3.0"; sha256="17mvb2ci2jgac3zi420cbf70n4zswqinzxlk1v2fjnp8vvydl2fw"; depends=[AnnotationDbi]; }; + org_Cf_eg_db = derive2 { name="org.Cf.eg.db"; version="3.3.0"; sha256="1d5ip9d0236kp6i7z2wy6xgfb1nf0sjc8qyggjfan6pb2lsx2m2y"; depends=[AnnotationDbi]; }; + org_Dm_eg_db = derive2 { name="org.Dm.eg.db"; version="3.3.0"; sha256="15kzvw78xwa54yk1d69l6pmgny4726ydpdkk8lic26vr0yiwicla"; depends=[AnnotationDbi]; }; + org_Dr_eg_db = derive2 { name="org.Dr.eg.db"; version="3.3.0"; sha256="1823101yjvyc8x4gbmz7bijm2s5bd0fz4nv62glmaczlfc4lcwp9"; depends=[AnnotationDbi]; }; + org_EcK12_eg_db = derive2 { name="org.EcK12.eg.db"; version="3.3.0"; sha256="0hjffgii1pxmri7razxpilsk7scbdm8ingfwbgn6g51lyd5ygbj3"; depends=[AnnotationDbi]; }; + org_EcSakai_eg_db = derive2 { name="org.EcSakai.eg.db"; version="3.3.0"; sha256="15pn6kdbx2pf07dfq4knxbx3s7hf8zyip1c8hfmnvs5ixajivgxz"; depends=[AnnotationDbi]; }; + org_Gg_eg_db = derive2 { name="org.Gg.eg.db"; version="3.3.0"; sha256="0my3kjhfvzv6zwdaina7qcl7riqy2rj2z2v6x477plwbscixb9p7"; depends=[AnnotationDbi]; }; + org_Hs_eg_db = derive2 { name="org.Hs.eg.db"; version="3.3.0"; sha256="09zb43yjd82ny210n5a0wsrji4w56l2r6ana6d9lx0nn9mzd7rzp"; depends=[AnnotationDbi]; }; org_Hs_ipi_db = derive2 { name="org.Hs.ipi.db"; version="1.3.0"; sha256="06nkcjcavzwgnxzmbj05i4dapszf2wq7m5s0g8d6hm7kxz5wxddy"; depends=[AnnotationDbi PAnnBuilder]; }; - org_Mm_eg_db = derive2 { name="org.Mm.eg.db"; version="3.2.3"; sha256="0wh1pm3npdg7070875kfgiid3bqkz3q7rq6snhk6bxfvph00298y"; depends=[AnnotationDbi]; }; - org_Mmu_eg_db = derive2 { name="org.Mmu.eg.db"; version="3.2.3"; sha256="037ihry1dly6cb3fhrlfsmcdma6ia6wl9b39c27ayibp9ga6ps0a"; depends=[AnnotationDbi]; }; - org_Pf_plasmo_db = derive2 { name="org.Pf.plasmo.db"; version="3.2.3"; sha256="1m0adzg66a9rf0m5xf07hzjil0avindaq3wam233gsxwmj91462k"; depends=[AnnotationDbi]; }; - org_Pt_eg_db = derive2 { name="org.Pt.eg.db"; version="3.2.3"; sha256="09yf36k3xbzj59c4difik2gkzsxl2rql42g5f1y239j6bigh9mga"; depends=[AnnotationDbi]; }; - org_Rn_eg_db = derive2 { name="org.Rn.eg.db"; version="3.2.3"; sha256="1vd6dzz1h6y0znbnxc8ifk929qinr81cglrqbg607xmz87lz1r7i"; depends=[AnnotationDbi]; }; - org_Sc_sgd_db = derive2 { name="org.Sc.sgd.db"; version="3.2.3"; sha256="0cdfbz8qb19rmvzp8lm835waijvwlp7b8dgwkd34diqx4pad4y6f"; depends=[AnnotationDbi]; }; + org_Mm_eg_db = derive2 { name="org.Mm.eg.db"; version="3.3.0"; sha256="0r939vfmsqqdwfimix1nv0bkhnixawy9c6avbclrncfanw3kgjax"; depends=[AnnotationDbi]; }; + org_Mmu_eg_db = derive2 { name="org.Mmu.eg.db"; version="3.3.0"; sha256="0awqg374j99j5g8z2am3cy0p92y68rsxss5b9by7mblxra4sy7gm"; depends=[AnnotationDbi]; }; + org_Pf_plasmo_db = derive2 { name="org.Pf.plasmo.db"; version="3.3.0"; sha256="0xydp19vacycxwkfc1r5z1sbhhmmg5kzv25jqrnm47lbvdsbzbnq"; depends=[AnnotationDbi]; }; + org_Pt_eg_db = derive2 { name="org.Pt.eg.db"; version="3.3.0"; sha256="1d0rrcpq3md5lavl3c9ypcbrg19l69p8abcxlzbqyn4rims6hsbp"; depends=[AnnotationDbi]; }; + org_Rn_eg_db = derive2 { name="org.Rn.eg.db"; version="3.3.0"; sha256="1d89gafdk0hra7c0rmkkbydvp23ayam186ydjcwydvpms4lpjssb"; depends=[AnnotationDbi]; }; + org_Sc_sgd_db = derive2 { name="org.Sc.sgd.db"; version="3.3.0"; sha256="1n251ds1gikv9ksgzy9a0j1z21kf18zj8q5b19zc0lh2pvgghhfh"; depends=[AnnotationDbi]; }; org_Sco_eg_db = derive2 { name="org.Sco.eg.db"; version="2.4.2"; sha256="1ppjl55059gk9jbh8c8xbsn2jlqz1hm650vm9gxnbd8hpnk63vgz"; depends=[AnnotationDbi]; }; - org_Ss_eg_db = derive2 { name="org.Ss.eg.db"; version="3.2.3"; sha256="0n2id4g5ikwlsr2c8qrdv5gmnjycyp40zgwg2xh9ml9ahpzx957s"; depends=[AnnotationDbi]; }; + org_Ss_eg_db = derive2 { name="org.Ss.eg.db"; version="3.3.0"; sha256="1fcskfrq0r4iq4nv2rnpl6sb5xi53qqihnm1cjnfi00mgc767xw1"; depends=[AnnotationDbi]; }; org_Tgondii_eg_db = derive2 { name="org.Tgondii.eg.db"; version="1.0"; sha256="1vq3qbk6jswfffj5lfwsic71h8ga7a6gqf6wfa7qcda3gvfhnwlc"; depends=[AnnotationDbi]; }; - org_Xl_eg_db = derive2 { name="org.Xl.eg.db"; version="3.2.3"; sha256="1l7i0wv89bd6f4var4qakjxz4frnrzm88frjcfac3kba98196pva"; depends=[AnnotationDbi]; }; + org_Xl_eg_db = derive2 { name="org.Xl.eg.db"; version="3.3.0"; sha256="16k3c5ym289hsrg7qvsdz8l7saisyrf096d5nrxd92jw1ilzj31q"; depends=[AnnotationDbi]; }; paeg1acdf = derive2 { name="paeg1acdf"; version="2.18.0"; sha256="127pgxxp5wp3hgmafbzdzsk4gqnllq1m1gcsfyzkvpkvmbn4aa9n"; depends=[AnnotationDbi]; }; paeg1aprobe = derive2 { name="paeg1aprobe"; version="2.18.0"; sha256="0hbyd402wf9nzy2g93nhnf2zsi9jvhgfk0llxlyfk0kqxs0y4byy"; depends=[AnnotationDbi]; }; pd_081229_hg18_promoter_medip_hx1 = derive2 { name="pd.081229.hg18.promoter.medip.hx1"; version="0.99.4"; sha256="1h4925dmw0vfsnhllg55gswq3sxfmx9rcjzifdvgs9y27399psrr"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite]; }; @@ -786,26 +808,26 @@ in with self; { pd_zebgene_1_0_st = derive2 { name="pd.zebgene.1.0.st"; version="3.12.0"; sha256="1vywph8shn23k0s8jmvx34rj34y1zxgwcssjnzbipm71f2sa15hw"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; pd_zebgene_1_1_st = derive2 { name="pd.zebgene.1.1.st"; version="3.12.0"; sha256="0xs3kx7l78dfqkasgz8n5s8qjia5qhdcnj1l8al0ivy8mwvlpyxs"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; pd_zebrafish = derive2 { name="pd.zebrafish"; version="3.12.0"; sha256="0gg7y7w51pv0vf39qzyaf09wl3vxy222nr69zgxg7cylwxmaky7v"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pedbarrayv10_db = derive2 { name="pedbarrayv10.db"; version="3.2.2"; sha256="1rvzg08d6b04d21hx4xsa3qdgdp7xndkkyi3yd7k8ilanpidi8jb"; depends=[AnnotationDbi org_Hs_eg_db]; }; - pedbarrayv9_db = derive2 { name="pedbarrayv9.db"; version="3.2.2"; sha256="1f8p1zapw74afch0bmn7j96296d88qwxx6p0qa1xf7ir8q92fl3x"; depends=[AnnotationDbi org_Hs_eg_db]; }; - phastCons100way_UCSC_hg19 = derive2 { name="phastCons100way.UCSC.hg19"; version="3.2.0"; sha256="07hpsghl8j4xs3601vd6vf1a1v1q5dn35kmih424cxwh1vhb5yyb"; depends=[BSgenome GenomicRanges IRanges VariantFiltering]; }; - phastCons100way_UCSC_hg38 = derive2 { name="phastCons100way.UCSC.hg38"; version="3.2.0"; sha256="14isvvv22y040qj3lbal0vf15l0k7c1r7jql27rl98f4n11hl1pc"; depends=[BSgenome GenomicRanges IRanges VariantFiltering]; }; - phastCons7way_UCSC_hg38 = derive2 { name="phastCons7way.UCSC.hg38"; version="3.2.0"; sha256="0vpally7hwh7snqcz005g9z0iabi545cqg8bgrg9970w29j4xrgk"; depends=[BSgenome GenomicRanges IRanges VariantFiltering]; }; - pig_db0 = derive2 { name="pig.db0"; version="3.2.3"; sha256="0kn1l48pwfc2bgmxck90fq9n2dayjzmdsj6rz44q02a4c5c2m6kz"; depends=[AnnotationDbi]; }; + pedbarrayv10_db = derive2 { name="pedbarrayv10.db"; version="3.2.3"; sha256="01sn7qh5r2c2ph7gqirlzlplxscsmczf7ajffd9rsx59932f71kx"; depends=[AnnotationDbi org_Hs_eg_db]; }; + pedbarrayv9_db = derive2 { name="pedbarrayv9.db"; version="3.2.3"; sha256="0x9m9m4nmdhc0j5244avmlfwljcpw0sh44l1b00cx05swi3vmjlp"; depends=[AnnotationDbi org_Hs_eg_db]; }; + phastCons100way_UCSC_hg19 = derive2 { name="phastCons100way.UCSC.hg19"; version="3.3.0"; sha256="1mdwkd75ljmshyprg5ns9880ck9hrq7015s413sp64d2fxj206z5"; depends=[BSgenome GenomicRanges IRanges VariantFiltering]; }; + phastCons100way_UCSC_hg38 = derive2 { name="phastCons100way.UCSC.hg38"; version="3.3.0"; sha256="1f5nq7chb5k5ahgwbjl0d67c382hvn50g0yz56l4ny1gwbgyamk7"; depends=[BSgenome GenomicRanges IRanges VariantFiltering]; }; + phastCons7way_UCSC_hg38 = derive2 { name="phastCons7way.UCSC.hg38"; version="3.3.0"; sha256="035zap0igcfvrncq7pc1y6f9whnik0izchqjidf6z0cdyhv3h088"; depends=[BSgenome GenomicRanges IRanges VariantFiltering]; }; + pig_db0 = derive2 { name="pig.db0"; version="3.3.0"; sha256="00lk4i3cvq3z14fxkyj393aa8sq70c9icd2srwkpgxhw51w8l3wz"; depends=[AnnotationDbi]; }; plasmodiumanophelescdf = derive2 { name="plasmodiumanophelescdf"; version="2.18.0"; sha256="1vs36091djinn3g6rjhmy9xfdyi58365zbcjc9mf50adnp2i5fq9"; depends=[AnnotationDbi]; }; plasmodiumanophelesprobe = derive2 { name="plasmodiumanophelesprobe"; version="2.18.0"; sha256="03hfq51nrpmx8ihc48jiih6bk99irrgal9x7i7mgcv8xd508gcsy"; depends=[AnnotationDbi]; }; poplarcdf = derive2 { name="poplarcdf"; version="2.18.0"; sha256="0j28czs936j2wgwp63qbwl1mjcflcrx7ir88jzxkkw7411ch1gl1"; depends=[AnnotationDbi]; }; poplarprobe = derive2 { name="poplarprobe"; version="2.18.0"; sha256="1pi6lhkk3lr49qs0yfpxm80nm1zqn4syykydymah2208r6qnkgv2"; depends=[AnnotationDbi]; }; - porcine_db = derive2 { name="porcine.db"; version="3.2.2"; sha256="1xbgvzhywv504xyd2kciixrcg9dr6c99czxclf0rwwl7dwyadwr1"; depends=[AnnotationDbi org_Ss_eg_db]; }; + porcine_db = derive2 { name="porcine.db"; version="3.2.3"; sha256="0xp86g0sp4jj2shjzvwg64fpp381lkjm0p5y3zwalznnrq6xl3hk"; depends=[AnnotationDbi org_Ss_eg_db]; }; porcinecdf = derive2 { name="porcinecdf"; version="2.18.0"; sha256="1ywbgh5nk3bba0mhmbbmvry0j9m9vk7qmsacl5nx1cjd7kp68csv"; depends=[AnnotationDbi]; }; porcineprobe = derive2 { name="porcineprobe"; version="2.18.0"; sha256="16q865wjrfcm5ffqwjdk762yq1ixa93jlvfg7xbhsvajvvw5dxdy"; depends=[AnnotationDbi]; }; primeviewcdf = derive2 { name="primeviewcdf"; version="2.18.0"; sha256="0qj3l2iabpl2d79pr258cbqar4hdpjkbwf829bnwrmabkaq92z48"; depends=[AnnotationDbi]; }; primeviewprobe = derive2 { name="primeviewprobe"; version="2.18.0"; sha256="0kw04789ihxnw874qcdj5ypwj6npya2v3p893ahjwhys5wrivmqg"; depends=[AnnotationDbi]; }; r10kcod_db = derive2 { name="r10kcod.db"; version="3.4.0"; sha256="073b5fb8dcqp5iq3h6p6250l91z6bzg72nzl7qva3jin33v96nmm"; depends=[AnnotationDbi org_Rn_eg_db]; }; - rae230a_db = derive2 { name="rae230a.db"; version="3.2.2"; sha256="095d2jf1g89855y7fmv6v8fpwk6gir2b1v5s7sj4xdry8ax67l0v"; depends=[AnnotationDbi org_Rn_eg_db]; }; + rae230a_db = derive2 { name="rae230a.db"; version="3.2.3"; sha256="1b2vj2dsihnj1h867z9biyxb3ai3lv47bhadim1z1gcyizkbll4x"; depends=[AnnotationDbi org_Rn_eg_db]; }; rae230acdf = derive2 { name="rae230acdf"; version="2.18.0"; sha256="1f62gw18mhmrm4sqc3kazsm5zd4m73f99xzxbakqhvr5sbdqh28k"; depends=[AnnotationDbi]; }; rae230aprobe = derive2 { name="rae230aprobe"; version="2.18.0"; sha256="0gkpaa53znqsmi3366wfmqz6q3d1cq3ymag09gkpdmssrp1rh9qh"; depends=[AnnotationDbi]; }; - rae230b_db = derive2 { name="rae230b.db"; version="3.2.2"; sha256="07nb27lhwabdh3yxirpnvgvym6wqal40xi105nmn5y6mr5a1q2yg"; depends=[AnnotationDbi org_Rn_eg_db]; }; + rae230b_db = derive2 { name="rae230b.db"; version="3.2.3"; sha256="0rjs9lijabhxfrs6m9qri7a1c10zm1mxqx7bbip366cw069f5dx4"; depends=[AnnotationDbi org_Rn_eg_db]; }; rae230bcdf = derive2 { name="rae230bcdf"; version="2.18.0"; sha256="1j2i49cp042nk3rkf8q6gxcnwd5cihz1nyg8r6yndkja51r41pi8"; depends=[AnnotationDbi]; }; rae230bprobe = derive2 { name="rae230bprobe"; version="2.18.0"; sha256="1smqs93fks4rd5g9kk7cacnpsnj4rjr0d6fl2i01mdiihfi3csny"; depends=[AnnotationDbi]; }; raex10stprobeset_db = derive2 { name="raex10stprobeset.db"; version="8.4.0"; sha256="004h4z10x84w9bk71y1a22r51hh52xhpvdr1flr6crgxvhh0icis"; depends=[AnnotationDbi org_Rn_eg_db]; }; @@ -820,37 +842,37 @@ in with self; { ragene20sttranscriptcluster_db = derive2 { name="ragene20sttranscriptcluster.db"; version="8.4.0"; sha256="18v7f7i6r9byq5sjr9pxshqmbr6p2iym3gv95lqqfg4qlgiri991"; depends=[AnnotationDbi org_Rn_eg_db]; }; ragene21stprobeset_db = derive2 { name="ragene21stprobeset.db"; version="8.4.0"; sha256="0qfhb9fpydfh9n0d41pky46zsjabg7cpmyg6m59v529s22xw1mhw"; depends=[AnnotationDbi org_Rn_eg_db]; }; ragene21sttranscriptcluster_db = derive2 { name="ragene21sttranscriptcluster.db"; version="8.4.0"; sha256="04cm1248iphl4n7avjr29ac44kgvhj8fkwxvb5wsyrjdfs15swmm"; depends=[AnnotationDbi org_Rn_eg_db]; }; - rat_db0 = derive2 { name="rat.db0"; version="3.2.4"; sha256="1yxamdcfgj0imjbj54hvwjyz0s5739654qf9c934ykrkfmfacrl0"; depends=[AnnotationDbi]; }; - rat2302_db = derive2 { name="rat2302.db"; version="3.2.2"; sha256="1m9kn3lx1kydglk503ila814v9rrd2sphhhyqdvw9cp4jd4d22c0"; depends=[AnnotationDbi org_Rn_eg_db]; }; + rat_db0 = derive2 { name="rat.db0"; version="3.3.0"; sha256="1dsb56lldvq8a75ryx7b1wvzaw9w8x0b1kjsnhd8jh2qj2rai2d5"; depends=[AnnotationDbi]; }; + rat2302_db = derive2 { name="rat2302.db"; version="3.2.3"; sha256="0vj4vkx091m34xqjh6gv6m2iqszvn5rq3kvnpyq3fin5v42wrsr1"; depends=[AnnotationDbi org_Rn_eg_db]; }; rat2302cdf = derive2 { name="rat2302cdf"; version="2.18.0"; sha256="1748rc6yypd7y8wgr1qg632pcsxx0fkxjz6b3z4fhblgdllhy9wk"; depends=[AnnotationDbi]; }; rat2302probe = derive2 { name="rat2302probe"; version="2.18.0"; sha256="1zwjgbcb9d4ib6z1iyjz8x11lq0b5gqs08y6j3idb5wf3i2p521v"; depends=[AnnotationDbi]; }; ratCHRLOC = derive2 { name="ratCHRLOC"; version="2.1.6"; sha256="0mgk6lwvvdwjzjh4r1q1q6nfnx4vqx9iy6gmbrb9f31jf30hqnsb"; depends=[]; }; rattoxfxcdf = derive2 { name="rattoxfxcdf"; version="2.18.0"; sha256="0q84lfaxnnj2zbm5q8xswa1md15fjj4i0djnqr835ixzn7px4yqn"; depends=[AnnotationDbi]; }; rattoxfxprobe = derive2 { name="rattoxfxprobe"; version="2.18.0"; sha256="1kp159553rkcn9yh6x3yph3yjz2ja21wi9j5ax03qnhwlsl1x8ik"; depends=[AnnotationDbi]; }; - reactome_db = derive2 { name="reactome.db"; version="1.54.1"; sha256="0nqv0yyhlnkn75zrj5chpmxcf2ak3bddffjkfwnm740hr7cn0491"; depends=[AnnotationDbi]; }; - rgu34a_db = derive2 { name="rgu34a.db"; version="3.2.2"; sha256="03p2qfg1bxpc6hd3g3j4hpndcb89id8ygkkn3za4gbbc4xql6543"; depends=[AnnotationDbi org_Rn_eg_db]; }; + reactome_db = derive2 { name="reactome.db"; version="1.55.0"; sha256="1q3cikzvbywzcrihnw5hizb8fylf1mfbwyrlyxcnw5hb522f5x8n"; depends=[AnnotationDbi]; }; + rgu34a_db = derive2 { name="rgu34a.db"; version="3.2.3"; sha256="1s2sd5bqlj4qhamhrnb9byxn8nc7z265mqy7zzkgxcd6a2k472vp"; depends=[AnnotationDbi org_Rn_eg_db]; }; rgu34acdf = derive2 { name="rgu34acdf"; version="2.18.0"; sha256="08z9f16xp1m2mwl9vlmbffxl4zyyl8cgzf6wp66rrm32lvl0nbwq"; depends=[AnnotationDbi]; }; rgu34aprobe = derive2 { name="rgu34aprobe"; version="2.18.0"; sha256="1gjxyq9128jgv3ic386f84rajgf3wz7yi2dja80y0ff4m0a48dlh"; depends=[AnnotationDbi]; }; - rgu34b_db = derive2 { name="rgu34b.db"; version="3.2.2"; sha256="1gckh80vjabrhwxnzqxr885z6jzmpmvd1lqpa430b6nmjffgq0fn"; depends=[AnnotationDbi org_Rn_eg_db]; }; + rgu34b_db = derive2 { name="rgu34b.db"; version="3.2.3"; sha256="1dpk9dyicqc8d4fypqcq2z4plq6iabd0g8f3bfvkp9qip3bi9np8"; depends=[AnnotationDbi org_Rn_eg_db]; }; rgu34bcdf = derive2 { name="rgu34bcdf"; version="2.18.0"; sha256="1iw0jydcjizkxybpbimcc9m8rjl4xm3jx431nvr28h14948jhrg3"; depends=[AnnotationDbi]; }; rgu34bprobe = derive2 { name="rgu34bprobe"; version="2.18.0"; sha256="097q0994fbn05b6iprncynpka9zm9ayh1pmjya44lj4ahfmflgiq"; depends=[AnnotationDbi]; }; - rgu34c_db = derive2 { name="rgu34c.db"; version="3.2.2"; sha256="0rhiqkgpr5fkjndbqgibrg8kcxxav0ijz3cfd1gflk0530q816sk"; depends=[AnnotationDbi org_Rn_eg_db]; }; + rgu34c_db = derive2 { name="rgu34c.db"; version="3.2.3"; sha256="0bc4b799hxxp108rkfr12c0v49vkfgq5p9hxk48p5a5b9h42g6s8"; depends=[AnnotationDbi org_Rn_eg_db]; }; rgu34ccdf = derive2 { name="rgu34ccdf"; version="2.18.0"; sha256="0v6glasybwg73synvlq6rf3fw4wckavp09waf3g3hya4qzy45r1x"; depends=[AnnotationDbi]; }; rgu34cprobe = derive2 { name="rgu34cprobe"; version="2.18.0"; sha256="00v9hbq5vc6ah4gws196isglicxj1dpzp1a0vv4pkl2ph59hkf1q"; depends=[AnnotationDbi]; }; - rguatlas4k_db = derive2 { name="rguatlas4k.db"; version="3.2.2"; sha256="02a3y3ysi7v9jlv2h22yj2lqy96x9szrliz0bvs5zz12jmmkv4rg"; depends=[AnnotationDbi org_Rn_eg_db]; }; - rgug4105a_db = derive2 { name="rgug4105a.db"; version="3.2.2"; sha256="0kxlhh14v8ygscxaym56302fpnl91ski5hzrdz2cinsp71p9zm08"; depends=[AnnotationDbi org_Rn_eg_db]; }; - rgug4130a_db = derive2 { name="rgug4130a.db"; version="3.2.2"; sha256="0z0cf5an7c6m5prkssyc5jsxxmsljpn71wgf2z54gdl8k5nq7gli"; depends=[AnnotationDbi org_Rn_eg_db]; }; - rgug4131a_db = derive2 { name="rgug4131a.db"; version="3.2.2"; sha256="0fhq9wmq9r5h4hzv0d33xc6ld6grcmngvydnr3lm325x97fpyfjc"; depends=[AnnotationDbi org_Rn_eg_db]; }; - rhesus_db0 = derive2 { name="rhesus.db0"; version="3.2.3"; sha256="0qfnhvn6v3ip6y10jcb7xnsv8v9y2madrynaga0giqxghdj87rki"; depends=[AnnotationDbi]; }; + rguatlas4k_db = derive2 { name="rguatlas4k.db"; version="3.2.3"; sha256="0q8xryvqixqbfqc9lfkmy9zymdlyk76vy4l3a74haj7k1m72nhi2"; depends=[AnnotationDbi org_Rn_eg_db]; }; + rgug4105a_db = derive2 { name="rgug4105a.db"; version="3.2.3"; sha256="0lq8k95qm0q7j65nf16p3f09dn9zs87n3k561wxrgi2lb0pf6j40"; depends=[AnnotationDbi org_Rn_eg_db]; }; + rgug4130a_db = derive2 { name="rgug4130a.db"; version="3.2.3"; sha256="0zlcn9spw23bj3px9z1l2f5afn09zbr6rv0nbd2h6dd12wrvy1zk"; depends=[AnnotationDbi org_Rn_eg_db]; }; + rgug4131a_db = derive2 { name="rgug4131a.db"; version="3.2.3"; sha256="1r272jf9cflf1yf4bznp4d59h7bd7adh1i3rf890h5ffc0xzf5cq"; depends=[AnnotationDbi org_Rn_eg_db]; }; + rhesus_db0 = derive2 { name="rhesus.db0"; version="3.3.0"; sha256="0xq7bvargvwv06xzalshw7iz75incm6cz58w7h7hg66avyvrxyc9"; depends=[AnnotationDbi]; }; rhesuscdf = derive2 { name="rhesuscdf"; version="2.18.0"; sha256="0q2alkxm80wkzaf0q80df27q30qkswybavz05x6ywsihbs9h0nb8"; depends=[AnnotationDbi]; }; rhesusprobe = derive2 { name="rhesusprobe"; version="2.18.0"; sha256="0fd8pvwvpcmx41k80nbccjxllh39fvjf7l9dr8facisl1x7gsfil"; depends=[AnnotationDbi]; }; ri16cod_db = derive2 { name="ri16cod.db"; version="3.4.0"; sha256="1xz533vxjdyxx1wkks0kgk6b90sxs44iqcsvyds0xcm573bx8c6q"; depends=[AnnotationDbi org_Rn_eg_db]; }; ricecdf = derive2 { name="ricecdf"; version="2.18.0"; sha256="07lsw9rklk2rsvbkcj1ci8hg2x68k3qpkx9yw0cmd7rg5fvydgns"; depends=[AnnotationDbi]; }; riceprobe = derive2 { name="riceprobe"; version="2.18.0"; sha256="0w6qvszdmnipn3v2bld46x7my2a9hni0jbxd0y1d6xcrrgs951ra"; depends=[AnnotationDbi]; }; - rnu34_db = derive2 { name="rnu34.db"; version="3.2.2"; sha256="1mhnazgbczf9bkdx20hyyfzk5kc4a71g4i9b7b5rcw99jpaabs3b"; depends=[AnnotationDbi org_Rn_eg_db]; }; + rnu34_db = derive2 { name="rnu34.db"; version="3.2.3"; sha256="0ahridq75rmjyaivmlhn428wg712zv3003cbzzrajm9w6nibbfgk"; depends=[AnnotationDbi org_Rn_eg_db]; }; rnu34cdf = derive2 { name="rnu34cdf"; version="2.18.0"; sha256="1snb89530zxdbsfs1vgw30b1wdc5sdr1q46bmvz5m9g57gyficr0"; depends=[AnnotationDbi]; }; rnu34probe = derive2 { name="rnu34probe"; version="2.18.0"; sha256="1rzjha1v453fxiwqs2zgwcbrvz6w96biz2jny0hrh5s86d5f6xpb"; depends=[AnnotationDbi]; }; - rtu34_db = derive2 { name="rtu34.db"; version="3.2.2"; sha256="16kf4h4dfhjk0m8ks3r76j9ca6qinzh2sh6258ba887gdy63rd78"; depends=[AnnotationDbi org_Rn_eg_db]; }; + rtu34_db = derive2 { name="rtu34.db"; version="3.2.3"; sha256="119l36gbzdi52na2lkjbpb5r2d9pp5rz2zpzfj7isw07an6h8wmh"; depends=[AnnotationDbi org_Rn_eg_db]; }; rtu34cdf = derive2 { name="rtu34cdf"; version="2.18.0"; sha256="10f5wnvk820c8brl2qqs7mv6jcn1v6pmz680kvlpyz9s2sz16936"; depends=[AnnotationDbi]; }; rtu34probe = derive2 { name="rtu34probe"; version="2.18.0"; sha256="0mcp9lmc65j3ds73gyak72pkshnx6km0d2cm324yaxlp9bqzfchw"; depends=[AnnotationDbi]; }; rwgcod_db = derive2 { name="rwgcod.db"; version="3.4.0"; sha256="1k0fpnv314lx2jf3mm6xfqa3jx353sp42awxqys9byzhg9zyj2j3"; depends=[AnnotationDbi org_Rn_eg_db]; }; @@ -869,18 +891,18 @@ in with self; { tomatocdf = derive2 { name="tomatocdf"; version="2.18.0"; sha256="1ldq5pxzh2vms5nbhn3aiy55hx2x3zbzy9wlbf2v2wczwlzbiinm"; depends=[AnnotationDbi]; }; tomatoprobe = derive2 { name="tomatoprobe"; version="2.18.0"; sha256="1aj8zmpla9b9p7pj0qnp2jqrj7azp1nmfvjcbka5ns5vrnvfpf92"; depends=[AnnotationDbi]; }; u133aaofav2cdf = derive2 { name="u133aaofav2cdf"; version="2.18.0"; sha256="052hs4lwllq0p0fsx5d1ixqhrdl889k14z10kahpsjn60746qarm"; depends=[AnnotationDbi]; }; - u133x3p_db = derive2 { name="u133x3p.db"; version="3.2.2"; sha256="0inmx2ssi7iafgf5smhszplrq1d149vcd9ddpfqy14q84fpxm6yc"; depends=[AnnotationDbi org_Hs_eg_db]; }; + u133x3p_db = derive2 { name="u133x3p.db"; version="3.2.3"; sha256="17wq16zhmpjpyxfhwr57kx61b4i87jkzza8qkqmcd6kcrhqkj92y"; depends=[AnnotationDbi org_Hs_eg_db]; }; u133x3pcdf = derive2 { name="u133x3pcdf"; version="2.18.0"; sha256="05bdb5bz1ffv7dhbzn0s5ybygah72zvhz8zcj8bn9dg0k40yqsrb"; depends=[AnnotationDbi]; }; u133x3pprobe = derive2 { name="u133x3pprobe"; version="2.18.0"; sha256="0xzm6dkf78mp1yhdl3w0hg36saxgb4sxnq0dsvzjmfaca74ir2qy"; depends=[AnnotationDbi]; }; vitisviniferacdf = derive2 { name="vitisviniferacdf"; version="2.18.0"; sha256="027nn1fr5zixnlikw4pi704kdfrfm388j5qr30y9bsky445fn7g4"; depends=[AnnotationDbi]; }; vitisviniferaprobe = derive2 { name="vitisviniferaprobe"; version="2.18.0"; sha256="1ggz1s37dwvrkhj4vx2civyhap7bgqsshy33lk14z4fjsayfi39a"; depends=[AnnotationDbi]; }; wheatcdf = derive2 { name="wheatcdf"; version="2.18.0"; sha256="1gmbrdilqvm54h6nkb1cm01ki8aipiywd4qj8gpwlm2hqrimr8kr"; depends=[AnnotationDbi]; }; wheatprobe = derive2 { name="wheatprobe"; version="2.18.0"; sha256="1fifi3pvzdrg356idwz0kx7qlf5mssdxlyvwpn3cjgw0z7n7cnw8"; depends=[AnnotationDbi]; }; - worm_db0 = derive2 { name="worm.db0"; version="3.2.3"; sha256="1wq82jvax97w1aqr6la9arzrqw81jwkvzj2fmq5fj6l9bkizh5a4"; depends=[AnnotationDbi]; }; - xenopus_db0 = derive2 { name="xenopus.db0"; version="3.2.3"; sha256="061nkbc90xa1hy26alshihs3gvl9qwqmfv05kc8gci9c15wp7k7k"; depends=[AnnotationDbi]; }; + worm_db0 = derive2 { name="worm.db0"; version="3.3.0"; sha256="00g3cq605zgzq11lrc8fyp5qyqds1rwq3qzbpg82ja29ggbnkr6f"; depends=[AnnotationDbi]; }; + xenopus_db0 = derive2 { name="xenopus.db0"; version="3.3.0"; sha256="1bxz80rg1kf9hawmbrawiswz8r8yb29ck7l8wwivi4n5cg3mfbkw"; depends=[AnnotationDbi]; }; xenopuslaeviscdf = derive2 { name="xenopuslaeviscdf"; version="2.18.0"; sha256="1bcz1hr7gxw6ac4qvw0giph6hfcf5i9b11s274ypq512qc1d32iq"; depends=[AnnotationDbi]; }; xenopuslaevisprobe = derive2 { name="xenopuslaevisprobe"; version="2.18.0"; sha256="0prb14zn2gvgxq8w0y21x1ng51cn3bgjhkppf7zkmnq1xkzvq0pw"; depends=[AnnotationDbi]; }; - xlaevis_db = derive2 { name="xlaevis.db"; version="3.2.2"; sha256="0pak2v29wf0lns8n8nx04p15vcs351vr1sr0arybffp15maw3lya"; depends=[AnnotationDbi org_Xl_eg_db]; }; + xlaevis_db = derive2 { name="xlaevis.db"; version="3.2.3"; sha256="0cdi71c8pflb8n4yfxc0wmfi51w6z0dlz7nw5hv0hkx547v79d53"; depends=[AnnotationDbi org_Xl_eg_db]; }; xlaevis2cdf = derive2 { name="xlaevis2cdf"; version="2.18.0"; sha256="1w7f6z5f0mfgblfjy840dxj3y1l9zz8fp4s8q6zd580nwaa50g78"; depends=[AnnotationDbi]; }; xlaevis2probe = derive2 { name="xlaevis2probe"; version="2.18.0"; sha256="0vrhbzi3myh10v7r5a6jqiinllns3n40nxs097px7g80x8ajkmb2"; depends=[AnnotationDbi]; }; xtropicaliscdf = derive2 { name="xtropicaliscdf"; version="2.18.0"; sha256="03plnc0dya0dgmvay3hyw5yi91ris6gl643chmjil7p8vn9lb5as"; depends=[AnnotationDbi]; }; @@ -889,16 +911,16 @@ in with self; { ye6100subbcdf = derive2 { name="ye6100subbcdf"; version="2.18.0"; sha256="1169hv56981b915rlr5w5sn6ppyjd8as7f4k1hbjzadrdrl3glwp"; depends=[AnnotationDbi]; }; ye6100subccdf = derive2 { name="ye6100subccdf"; version="2.18.0"; sha256="0mhr4zd33gfvvivc17k7fb6nvmhq6h3q0xbx2zl09zd6qk09kizm"; depends=[AnnotationDbi]; }; ye6100subdcdf = derive2 { name="ye6100subdcdf"; version="2.18.0"; sha256="11b1fflgc34lrj4yf1p7way5n83cm9c7znsbxpzlwddwyy8qib30"; depends=[AnnotationDbi]; }; - yeast_db0 = derive2 { name="yeast.db0"; version="3.2.4"; sha256="1y1p2987w480nr2mdvkyag8ixhxf15y5h5awk69kpq5qvpd73q2y"; depends=[AnnotationDbi]; }; - yeast2_db = derive2 { name="yeast2.db"; version="3.2.2"; sha256="0wgfpnsc8mpizag8x2mpyf0hj00k3fwsfz6nws7fnrndqhc47ixb"; depends=[AnnotationDbi org_Sc_sgd_db]; }; + yeast_db0 = derive2 { name="yeast.db0"; version="3.3.0"; sha256="0dpdqn22m5l78ck5shwpiw4qza63sddckzdq85fx4xskmnr0qhr2"; depends=[AnnotationDbi]; }; + yeast2_db = derive2 { name="yeast2.db"; version="3.2.3"; sha256="1xns0129ifklipbardybkjyxfwnlklavq0k6s15wk2iwk7vxa33s"; depends=[AnnotationDbi org_Sc_sgd_db]; }; yeast2cdf = derive2 { name="yeast2cdf"; version="2.18.0"; sha256="0c68val9x8bfnv4xx0vag9dxwsx5q8dzbj0dpha3nshh12jw48w9"; depends=[AnnotationDbi]; }; yeast2probe = derive2 { name="yeast2probe"; version="2.18.0"; sha256="125nif693qcmxc0nnnz917f9avggcdr8g9rfvx2qdc54a2l7vdb7"; depends=[AnnotationDbi]; }; - ygs98_db = derive2 { name="ygs98.db"; version="3.2.2"; sha256="07qkrv7c17h0h851402pf7rvlf00izm8f3s5bjpyagnjpzbxxyd4"; depends=[AnnotationDbi org_Sc_sgd_db]; }; + ygs98_db = derive2 { name="ygs98.db"; version="3.2.3"; sha256="0py1xpqxsfvxk20knn4lj872mxw1ysqk2nvgsbh5l2rh1m2p8rdk"; depends=[AnnotationDbi org_Sc_sgd_db]; }; ygs98cdf = derive2 { name="ygs98cdf"; version="2.18.0"; sha256="0j04biahbm2l31aayddp0z9rh3jq1ydxf3h8pxr3pvq2vjj1q2mh"; depends=[AnnotationDbi]; }; ygs98frmavecs = derive2 { name="ygs98frmavecs"; version="1.3.0"; sha256="1xrm1209xnknwvad7nvg1a0mbxz15z12yd4x5bia3cq03zcmzf9m"; depends=[]; }; ygs98probe = derive2 { name="ygs98probe"; version="2.18.0"; sha256="0awf6z4j2vb2jk9a9j2r512yd3m31660y68pasa9mp488m270a3q"; depends=[AnnotationDbi]; }; - zebrafish_db = derive2 { name="zebrafish.db"; version="3.2.2"; sha256="1hx6x2ninchkyw4gmw4frzs0j7zj8lbh880q6wvvzf76a414lka2"; depends=[AnnotationDbi org_Dr_eg_db]; }; - zebrafish_db0 = derive2 { name="zebrafish.db0"; version="3.2.4"; sha256="0y5i2rb5vskpal3kchk8c5wywynvaz9dacb9hggk03qkrbpz03bn"; depends=[AnnotationDbi]; }; + zebrafish_db = derive2 { name="zebrafish.db"; version="3.2.3"; sha256="1n6p04hlm5c32fnficx294s7n7izy5460avagw8hx1g5xryhdzqk"; depends=[AnnotationDbi org_Dr_eg_db]; }; + zebrafish_db0 = derive2 { name="zebrafish.db0"; version="3.3.0"; sha256="1x0pzppwlm2ad8b2amg3i4jcpkadr2x26nqdhjqyjag0kq5w72zl"; depends=[AnnotationDbi]; }; zebrafishcdf = derive2 { name="zebrafishcdf"; version="2.18.0"; sha256="0sq1xqhblbilvaiabhqyl9gxdj3jg576vgq8v0cls1zvvx0isrx0"; depends=[AnnotationDbi]; }; zebrafishprobe = derive2 { name="zebrafishprobe"; version="2.18.0"; sha256="1pb8z2rdhq11hq391xyi236scyafbp56kbhhwsnha36yygz5drw0"; depends=[AnnotationDbi]; }; } diff --git a/pkgs/development/r-modules/bioc-experiment-packages.nix b/pkgs/development/r-modules/bioc-experiment-packages.nix index 4ae4806a6836..93fc5a95482e 100644 --- a/pkgs/development/r-modules/bioc-experiment-packages.nix +++ b/pkgs/development/r-modules/bioc-experiment-packages.nix @@ -4,263 +4,299 @@ # Rscript generate-r-packages.R bioc-experiment >new && mv new bioc-experiment-packages.nix { self, derive }: -let derive2 = derive { rVersion = "3.2"; }; +let derive2 = derive { rVersion = "3.3"; }; in with self; { - ABAData = derive2 { name="ABAData"; version="1.0.0"; sha256="1p2q03c87ilwfz7gbypkfi0n3m9m3c4z6ci9b5v4pr46q4ppl7s9"; depends=[]; }; - ALL = derive2 { name="ALL"; version="1.12.0"; sha256="1k4sx1ras9g9zbx34r5nxyrik5c5jzb4b1zxf4551q5xfy97w354"; depends=[Biobase]; }; - ALLMLL = derive2 { name="ALLMLL"; version="1.10.0"; sha256="0c1ma3lzh1dvmz7h1pw0r9vvq9y0xmc1hjm0lwr3ql509lim82aw"; depends=[affy]; }; - ARRmData = derive2 { name="ARRmData"; version="1.6.0"; sha256="1bn41pmk7mfdncjnd103spfdcxrwz5jgdycb37kgq1hk36qzw3mj"; depends=[]; }; - Affyhgu133A2Expr = derive2 { name="Affyhgu133A2Expr"; version="1.6.0"; sha256="03gb68gw3q6aig3r510h9rwlhj4g40n1dsic2iyj5cs9fmj6gfq1"; depends=[]; }; - Affyhgu133Plus2Expr = derive2 { name="Affyhgu133Plus2Expr"; version="1.4.0"; sha256="1bzc53gcazsl3958nnq3igy4xrd693gl9gsrz48zaj47gwij2la0"; depends=[]; }; - Affyhgu133aExpr = derive2 { name="Affyhgu133aExpr"; version="1.8.0"; sha256="0cm5giv12p3cx3z0ync7pgj309n4xy630y9wr70pb7n9kr0f5gjf"; depends=[]; }; - AffymetrixDataTestFiles = derive2 { name="AffymetrixDataTestFiles"; version="0.8.0"; sha256="1cag2mc81qcqx8gwlg4xyvm4a6qayjajwdna8mcwki42gjdl15x4"; depends=[]; }; - Affymoe4302Expr = derive2 { name="Affymoe4302Expr"; version="1.8.0"; sha256="0ajxf81y3w6r60gj6ybkzqn7qcqrwch1s10nd2jcv7ki4w6vw6kb"; depends=[]; }; - AmpAffyExample = derive2 { name="AmpAffyExample"; version="1.10.0"; sha256="1xpkdllg9a86pc4fjfiv9a0n8mbiaxyz3ra40v9drwh29skkfpm2"; depends=[affy]; }; - AshkenazimSonChr21 = derive2 { name="AshkenazimSonChr21"; version="1.0.0"; sha256="1jz69nxilwcs9h7hj366dl20fxlblrgvplnjjr091r5jy3a43cvj"; depends=[]; }; - BeadArrayUseCases = derive2 { name="BeadArrayUseCases"; version="1.8.0"; sha256="0vszzx44sppd0gka884fm53al9ljpjl4rrzq7li4w23ndf8sf5ak"; depends=[beadarray GEOquery limma]; }; - CCl4 = derive2 { name="CCl4"; version="1.8.0"; sha256="0wmkkvxb2k0x921djf7x08svkm6lxfy00053ba572zk9rgb1pzqf"; depends=[Biobase limma]; }; - CLL = derive2 { name="CLL"; version="1.10.0"; sha256="1r9iv4m993nz7rj6z23pclgd4c8j75d5raq2518vjkp1a4prhj4s"; depends=[affy Biobase]; }; - COHCAPanno = derive2 { name="COHCAPanno"; version="1.6.0"; sha256="0dayg8p92ma2bwjn4c342q03z1cmb8xyazr4c8y8pzddrydwaizv"; depends=[]; }; - COPDSexualDimorphism_data = derive2 { name="COPDSexualDimorphism.data"; version="1.6.0"; sha256="045fh1g0m6z47q5smc2x7q3adfxs50fa3ph0k9b3qrkrzfq4dpcb"; depends=[]; }; - COSMIC_67 = derive2 { name="COSMIC.67"; version="1.6.0"; sha256="0ixjr4r3rj4q0mhv3nkvl4f9h6a4p0zhb90byri9w9jwskzm41h1"; depends=[GenomicRanges SummarizedExperiment VariantAnnotation]; }; - CRCL18 = derive2 { name="CRCL18"; version="0.104.0"; sha256="1k3xk588a6jm4cifpaljciwfhwwgz1f7wigwlsi06mqnxic6d545"; depends=[Biobase]; }; - CardinalWorkflows = derive2 { name="CardinalWorkflows"; version="1.2.0"; sha256="0whrczwqlni05iifra614mi2s9a9byj8gzi9dzh85947nxvvky67"; depends=[Cardinal]; }; - ChAMPdata = derive2 { name="ChAMPdata"; version="1.8.0"; sha256="0f8b7zf90avxl9siz4289m91yp21w4bk5hjw6rpkl2w2wvgcz6a1"; depends=[]; }; - ChIPXpressData = derive2 { name="ChIPXpressData"; version="1.8.0"; sha256="0n3v9d4dbdwbjr01sn4gbys521wmqsnfdg2hbfs0fhp9kajrh9ya"; depends=[bigmemory]; }; - ChimpHumanBrainData = derive2 { name="ChimpHumanBrainData"; version="1.8.0"; sha256="08p3n2ds4fxwbh0xp19z7p6qf7p07h87hxlcfnvsf0vzi8ifp146"; depends=[affy hexbin limma qvalue statmod]; }; - ConnectivityMap = derive2 { name="ConnectivityMap"; version="1.6.0"; sha256="05gbp5gnqmdpc3yk1mbd7vj3phy1kjyimvndrc7ijvnmcg7dzs9m"; depends=[]; }; - CopyNumber450kData = derive2 { name="CopyNumber450kData"; version="1.6.0"; sha256="1scg0mij4rpgb4sfk7fzrd3yxryglnj94gv5dgj6k2gw1551xiyh"; depends=[IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest minfi]; }; - CopyhelpeR = derive2 { name="CopyhelpeR"; version="1.2.0"; sha256="1snbk048xigzskajjcm3ihm0cj9yb57h79ac91cmlpqkac6bvpsg"; depends=[]; }; - DLBCL = derive2 { name="DLBCL"; version="1.10.0"; sha256="0nmhm768cpfq8kzhc0x33yqdaw9zi7n0vzgaw2qb1f89dr0bwvm4"; depends=[Biobase]; }; - DMRcatedata = derive2 { name="DMRcatedata"; version="1.6.1"; sha256="1fd6wsg7v89iknwnpf0ypxwvpz5kl6dzwm74dsrn179fm2wxjqjm"; depends=[GenomicRanges]; }; - DREAM4 = derive2 { name="DREAM4"; version="1.6.0"; sha256="1plla7jzqarwcanyb2ss330y9ssmrr6ka6fa6040r1z0y64c12qj"; depends=[SummarizedExperiment]; }; - DeSousa2013 = derive2 { name="DeSousa2013"; version="1.6.0"; sha256="18yanbz9nnaxsxgnydvr55xw95aymk2l32fad3xzh2fb1lb3wmqm"; depends=[affy AnnotationDbi Biobase cluster ConsensusClusterPlus frma frmaTools gplots hgu133plus2_db hgu133plus2frmavecs pamr rgl ROCR siggenes survival sva]; }; - DmelSGI = derive2 { name="DmelSGI"; version="1.2.0"; sha256="0cxzw6fb3gwp46j3gc59ygiaghv4wi3dx2dbljbq9f5csnfwdr9y"; depends=[abind gplots igraph knitr limma rhdf5 TSP]; }; - DonaPLLP2013 = derive2 { name="DonaPLLP2013"; version="1.8.0"; sha256="1s50gkjvsradqrjz47xlpzxrl1xad52g07ww75vyrgk0pqdczcgr"; depends=[EBImage]; }; - DrugVsDiseasedata = derive2 { name="DrugVsDiseasedata"; version="1.6.0"; sha256="1n4nmcynm9g86n33x4ndgja8c1qkk940z9dgl15y47plyc4xx1mv"; depends=[]; }; - DvDdata = derive2 { name="DvDdata"; version="1.6.0"; sha256="1vzxlaa5481w70cy9ihmm2xk9hn7l4hwvi663i6fgjc1dzramvql"; depends=[]; }; - ELMER_data = derive2 { name="ELMER.data"; version="1.0.0"; sha256="19v1vy16ppz1nc9s4586qvsz70d1jq7cx5rj4ravnd6kwvnk12xr"; depends=[GenomicRanges]; }; - EatonEtAlChIPseq = derive2 { name="EatonEtAlChIPseq"; version="0.8.0"; sha256="0dh37fdd8y2fnr0mf7c8jxizmpgd4xb51l1wyvbrc47iqb068g33"; depends=[GenomicRanges rtracklayer ShortRead]; }; - FANTOM3and4CAGE = derive2 { name="FANTOM3and4CAGE"; version="1.6.0"; sha256="1s077sdz9szxzva3js1qcm5p64yy56bxjcxsf474k12n39ax5bx5"; depends=[]; }; - Fletcher2013a = derive2 { name="Fletcher2013a"; version="1.6.0"; sha256="1q020k3iaf74cipyj4dz3qqi1007nnjhpgqf143axqzl9p7cy9f1"; depends=[Biobase gplots limma VennDiagram]; }; - Fletcher2013b = derive2 { name="Fletcher2013b"; version="1.6.0"; sha256="0vwdklxshkpsv3wi69j7m1vdjl556zw6hxzak0jcnf60m4hmyxj2"; depends=[Fletcher2013a igraph RColorBrewer RedeR RTN]; }; - FlowSorted_Blood_450k = derive2 { name="FlowSorted.Blood.450k"; version="1.8.0"; sha256="1g3jd0wihx2nw5hfjmpv3vgragkgx0nwh3j2f2fl2zdbkiaawf7j"; depends=[minfi]; }; - FlowSorted_DLPFC_450k = derive2 { name="FlowSorted.DLPFC.450k"; version="1.6.0"; sha256="1xk67dxwmpiraidfmr1k6qqbfi1fnpzsr35rn4khiwh6frsyvw0d"; depends=[minfi]; }; - FunciSNP_data = derive2 { name="FunciSNP.data"; version="1.6.0"; sha256="15f3b6p5gr25pfrnzsd90w9dnajryia66scpd4jfrws8jagccszq"; depends=[IRanges rtracklayer]; }; - GGdata = derive2 { name="GGdata"; version="1.8.0"; sha256="1r2kshwi8iajk0rwzkccdw389ffvkzivg82f4bri3xw0sq57fm50"; depends=[AnnotationDbi Biobase GGBase illuminaHumanv1_db snpStats]; }; - GSBenchMark = derive2 { name="GSBenchMark"; version="0.104.0"; sha256="133myyzjs6ybj0p7vmrz6xbrc21xid50351pyrd2hm8xrry8h7sa"; depends=[]; }; - GSVAdata = derive2 { name="GSVAdata"; version="1.6.0"; sha256="1aldm4mjzdfwnfplrr0nd115w9s877xq1glm1lv60y7dbcki0ghd"; depends=[Biobase GSEABase hgu95a_db]; }; - GWASdata = derive2 { name="GWASdata"; version="1.8.0"; sha256="1spphp552kajq80q630bwq9ynjfb0abl97fhkfgqi312xiyz8hs8"; depends=[GWASTools]; }; - HD2013SGI = derive2 { name="HD2013SGI"; version="1.10.0"; sha256="004d5j2pfrjll68qdswpla81vl6n91vq3jq5rqpc4dwsbgxwaziy"; depends=[EBImage geneplotter gplots limma LSD RColorBrewer splots vcd]; }; - HEEBOdata = derive2 { name="HEEBOdata"; version="1.8.0"; sha256="04s7jdlhls5rzyaczdar8qzln008c97fh5a51mysxw8d53cj2qd9"; depends=[]; }; - HIVcDNAvantWout03 = derive2 { name="HIVcDNAvantWout03"; version="1.10.0"; sha256="0smdnfvv8gmccxa648lh5smz2cb157bsh823kcwbb49hlm3m1mp9"; depends=[]; }; - HSMMSingleCell = derive2 { name="HSMMSingleCell"; version="0.104.0"; sha256="0d3vigzcrdx0jk9bb27xn7zkz61jgfwsljw0xgsncq1r34v3jrmm"; depends=[]; }; - HiCDataHumanIMR90 = derive2 { name="HiCDataHumanIMR90"; version="0.104.0"; sha256="1l5xlfjlg619acc8sr8c3mm89cyqnkaicscmjbz6iir2zvprx0qm"; depends=[]; }; - HiCDataLymphoblast = derive2 { name="HiCDataLymphoblast"; version="1.6.0"; sha256="04a9mqs7xfvyk8604g936hrgpfrq26xhi717caf32jh8hl2aaq82"; depends=[]; }; - Hiiragi2013 = derive2 { name="Hiiragi2013"; version="1.6.0"; sha256="1pqahziip8rxmnx2vpylxlfj7g21f051d13f7if4p5wgdkyy1n96"; depends=[affy Biobase boot clue cluster genefilter geneplotter gplots gtools KEGGREST lattice latticeExtra MASS mouse4302_db RColorBrewer xtable]; }; - ITALICSData = derive2 { name="ITALICSData"; version="2.8.0"; sha256="042axcyf4g5m5b7yl97x36n69jr3rhir3bxghpxw0xc6cbxq047g"; depends=[]; }; - Illumina450ProbeVariants_db = derive2 { name="Illumina450ProbeVariants.db"; version="1.6.0"; sha256="10a082khw646qsqalijks35x7if997181phqw66p2gg9iy2pq0w3"; depends=[]; }; - IlluminaDataTestFiles = derive2 { name="IlluminaDataTestFiles"; version="1.8.0"; sha256="1p6wh8y51jnz61akk5n03aklph4gh5xbkzy30mnk2gassfgd7psp"; depends=[]; }; - Iyer517 = derive2 { name="Iyer517"; version="1.12.0"; sha256="193q80789jd4afgij6pzw86pccwfg1hyyr88yc5vmvh922g94iw0"; depends=[Biobase]; }; - JASPAR2014 = derive2 { name="JASPAR2014"; version="1.6.0"; sha256="17xnxqbwv073qsyimhrsssc32xcsi2v3kh4s2qzy8is3snv560ff"; depends=[Biostrings]; }; - KEGGandMetacoreDzPathwaysGEO = derive2 { name="KEGGandMetacoreDzPathwaysGEO"; version="0.104.0"; sha256="125bhkzjva7xw5zys3ahqr0qig67yms1w37zh86bcf7x2wm88ky2"; depends=[Biobase BiocGenerics]; }; - KEGGdzPathwaysGEO = derive2 { name="KEGGdzPathwaysGEO"; version="1.8.0"; sha256="05hzmszj7dpyb6ahkxic7ykxvc57zvdfv844yss4m0a217mymglz"; depends=[Biobase BiocGenerics]; }; - LiebermanAidenHiC2009 = derive2 { name="LiebermanAidenHiC2009"; version="0.8.0"; sha256="0884yzyn79sfbr4wbv8vjq5ivvvk21l1r273w2sqbqay41kakrkj"; depends=[IRanges KernSmooth]; }; - ListerEtAlBSseq = derive2 { name="ListerEtAlBSseq"; version="1.2.0"; sha256="12ycbz6iiq0byfvc3f3y9vfafqpskys3wycmjsiym2xscmvhqdnw"; depends=[methylPipe]; }; - LungCancerACvsSCCGEO = derive2 { name="LungCancerACvsSCCGEO"; version="1.6.0"; sha256="04srfy56sb015iprc4r634dkabvq44fhhl7i8j9q9llg1bl43q06"; depends=[]; }; - LungCancerLines = derive2 { name="LungCancerLines"; version="0.8.0"; sha256="18alyl6hlcnx5qwakssfwqkl2aigjmcbrvxax3k9h1pvi3hwp2vf"; depends=[Rsamtools]; }; - MAQCsubset = derive2 { name="MAQCsubset"; version="1.8.0"; sha256="0dz9qnnnri2zx8iy1hshyssmq4ry16194n5gbq7j7db9c56i5ymb"; depends=[affy Biobase lumi]; }; - MAQCsubsetAFX = derive2 { name="MAQCsubsetAFX"; version="1.8.0"; sha256="0kp9p51v0c3025d74gx64qpyxhgc0rrdp5li0x2jvihyjgd1wz4r"; depends=[affy Biobase]; }; - MAQCsubsetILM = derive2 { name="MAQCsubsetILM"; version="1.8.0"; sha256="0a9mihv039f45n6h8isc834nmckcxhailah5lqmgca6lz7hclnpf"; depends=[Biobase lumi]; }; - MEALData = derive2 { name="MEALData"; version="1.0.0"; sha256="19k7fppx41v3lwrbm13d9wni7z1hjaxms14aap00ffwpwzs6f0z5"; depends=[]; }; - MEDIPSData = derive2 { name="MEDIPSData"; version="1.6.0"; sha256="1jq48li4m8ha4alfhqh7aqkrd18sk4fr1qb7vrhahqhb5q7s4vg9"; depends=[]; }; - MEEBOdata = derive2 { name="MEEBOdata"; version="1.8.0"; sha256="140p9h1f3zg5dm8nqs9hqwydlw58qzs32my2d4zmzzk6g41bj5pc"; depends=[]; }; - MMDiffBamSubset = derive2 { name="MMDiffBamSubset"; version="1.6.0"; sha256="111830m6mzc0dlvqpq4ixi1zrfkp66vhj9i3433kyp9mw2d7mnc4"; depends=[]; }; - MSBdata = derive2 { name="MSBdata"; version="0.8.0"; sha256="10yngdppq6706jmvd8i00l01mva8757aavfmz8mmvcyi5cggz200"; depends=[]; }; - MUGAExampleData = derive2 { name="MUGAExampleData"; version="0.104.0"; sha256="00j2sgljvqpimd574k1v8apbnsb7sja79alwxq2mk26y96zh76a9"; depends=[]; }; - MethylAidData = derive2 { name="MethylAidData"; version="1.2.0"; sha256="0qyvppw5p0akqkxk26b955gjn15rikxyvxmkwd4qrv4pbxbc1crp"; depends=[MethylAid]; }; - Mulder2012 = derive2 { name="Mulder2012"; version="0.10.0"; sha256="1dlk8nrvpfk4byii5yssss016yz3qc8ndldgj44p97bqs4nfnjb4"; depends=[HTSanalyzeR igraph KEGG_db MASS org_Hs_eg_db PANR pvclust RedeR]; }; - NCIgraphData = derive2 { name="NCIgraphData"; version="1.6.0"; sha256="1mg7rw32is8zp86rgypp0m4xv9s2phhl1z7dvdcz5knmh0c15rp8"; depends=[]; }; - NGScopyData = derive2 { name="NGScopyData"; version="0.104.0"; sha256="0wrzkqs7171jq3h9pkphz0jb8zdr3qqvz6k3xylyd13mapjabx85"; depends=[]; }; - Neve2006 = derive2 { name="Neve2006"; version="0.8.0"; sha256="0k7xqri4z3jqaqblplijddbcmaz0j1pkmzqxk13nrw501fa8cirr"; depends=[annotate Biobase hgu133a_db]; }; - PREDAsampledata = derive2 { name="PREDAsampledata"; version="0.10.0"; sha256="0bgcfpyhyx4dxfn54m3h9xi15xga6ckrjfr3yjmw73fyplz2bmlh"; depends=[affy annotate Biobase gahgu133plus2_db gahgu133plus2cdf PREDA]; }; - PWMEnrich_Dmelanogaster_background = derive2 { name="PWMEnrich.Dmelanogaster.background"; version="4.4.0"; sha256="00jdgz26ywqff7a216snj25kdd1dw0mh8y2qjscw9rii0mwxpg52"; depends=[PWMEnrich]; }; - PWMEnrich_Hsapiens_background = derive2 { name="PWMEnrich.Hsapiens.background"; version="4.4.0"; sha256="06mm7vp93g9jy5jxkcn2cmn8w1dq3k97aymi24hzgynnbzx4bcw2"; depends=[PWMEnrich]; }; - PWMEnrich_Mmusculus_background = derive2 { name="PWMEnrich.Mmusculus.background"; version="4.4.0"; sha256="0ivzysswnmj338fb4nmriw3hnslg4s8mqcskibgs42c2vm5c9ak1"; depends=[PWMEnrich]; }; - PathNetData = derive2 { name="PathNetData"; version="1.6.0"; sha256="1wcwbkhr4m3y3yp8p4zqyjlf6gvidzfds967bflfmf6yfgfbfmf4"; depends=[]; }; - ProData = derive2 { name="ProData"; version="1.8.0"; sha256="1lwa3cick6v4cdmb0das24vh8jpf9c5vnw2mpsckiaqzffx32n9j"; depends=[Biobase]; }; - QDNAseq_hg19 = derive2 { name="QDNAseq.hg19"; version="1.0.0"; sha256="1iwaing44cknnx9bhfq7qq8xcw8zdhi73p111y9f9gk00g8kwkxs"; depends=[QDNAseq]; }; - QDNAseq_mm10 = derive2 { name="QDNAseq.mm10"; version="1.0.0"; sha256="1kzr1w4kixxdd4nnz9ipkwqisx4r7wqr657qaa81axvsw71mawmy"; depends=[QDNAseq]; }; - RIPSeekerData = derive2 { name="RIPSeekerData"; version="1.6.0"; sha256="1z0dbjid7fj9zixi3nyx9cjzmxhc684wsfglkd937a248s7f402f"; depends=[RIPSeeker]; }; - RMassBankData = derive2 { name="RMassBankData"; version="1.8.0"; sha256="121dxhy7grdx0qgnyn303isrj4pvm8h6370vgd5bidz6vp4fh0h0"; depends=[]; }; - RNAinteractMAPK = derive2 { name="RNAinteractMAPK"; version="1.8.0"; sha256="0gdphygdpkcsxagpc2ifyqwdbr3imcym3xjqqazr2lczwpdjaffh"; depends=[fields gdata genefilter MASS RNAinteract sparseLDA]; }; - RNAseqData_HNRNPC_bam_chr14 = derive2 { name="RNAseqData.HNRNPC.bam.chr14"; version="0.8.0"; sha256="17pr4y3y6dpiqnsz5z4178jmvvdx75175kh3in4gk9q1wwsc7d4z"; depends=[]; }; - RRBSdata = derive2 { name="RRBSdata"; version="0.104.0"; sha256="1ln5jmwfxhjsqq51c02fa2s11kh2vmqgagllknimx32r105rg8mi"; depends=[BiSeq]; }; - RTCGA_clinical = derive2 { name="RTCGA.clinical"; version="1.0.0"; sha256="02c9id94m6wyrfk2s6rm5kbxzr22jmjlmv2xkay9c2k0032687aw"; depends=[RTCGA]; }; - RTCGA_mutations = derive2 { name="RTCGA.mutations"; version="1.0.0"; sha256="14b2rlka05vp1l91g37kbpff2cc9fy43wmr90xqh0ka6rp1yh9d3"; depends=[RTCGA]; }; - RTCGA_rnaseq = derive2 { name="RTCGA.rnaseq"; version="1.0.0"; sha256="16zz3g71y0v2zbca9iiv3p09nd9rg8nh0184q30gk44spfd7chcd"; depends=[RTCGA]; }; - RUVnormalizeData = derive2 { name="RUVnormalizeData"; version="0.104.0"; sha256="0nagj99fd99jamyhkqif10nib5d1l1v96j73psqk07205ivpgvfv"; depends=[Biobase]; }; - RforProteomics = derive2 { name="RforProteomics"; version="1.8.0"; sha256="1hf9m7fayq6ld6ps2jzwgfv1pxj5lzxlnaybgmfcyk90nsilbmgd"; depends=[Biobase BiocInstaller biocViews interactiveDisplay MSnbase R_utils rpx shiny]; }; - RnBeads_hg19 = derive2 { name="RnBeads.hg19"; version="1.2.1"; sha256="1lk91ma5431z9j0j7p5cvkg2bvwggddjfpxy8syd981lyjmpw2f3"; depends=[GenomicRanges]; }; - RnBeads_hg38 = derive2 { name="RnBeads.hg38"; version="1.2.0"; sha256="0abwn5qckc5bha73msgcf2zn4v20lbyc3c7g3ag0lj6jl6n0hrb8"; depends=[GenomicRanges]; }; - RnBeads_mm10 = derive2 { name="RnBeads.mm10"; version="1.2.0"; sha256="1q9dcjqwf6n5zld1wfcy0s1qjg0fgxvvxfjvxfmlialwxc0bq3wm"; depends=[GenomicRanges]; }; - RnBeads_mm9 = derive2 { name="RnBeads.mm9"; version="1.2.0"; sha256="0ycy0a270vn0q0psa4ypdj6vwhfmwa15046dmi17xhw73rh3409k"; depends=[GenomicRanges]; }; - RnBeads_rn5 = derive2 { name="RnBeads.rn5"; version="1.2.0"; sha256="0zih5n5jh0fwjyswdk7m2v0dyqxclsgd1plblgzsdmg9gk0xr99q"; depends=[GenomicRanges]; }; - RnaSeqSampleSizeData = derive2 { name="RnaSeqSampleSizeData"; version="1.2.0"; sha256="0xkhdxam57zshrx3x8iyqlx15iyfnb5zjpc51fzw286xx7qkwm12"; depends=[edgeR]; }; - RnaSeqTutorial = derive2 { name="RnaSeqTutorial"; version="0.8.0"; sha256="0xqzzrgw759kh9had1iav2ffvvdbpf83f8wvpxwb3djpikaxh8s7"; depends=[easyRNASeq]; }; - SCLCBam = derive2 { name="SCLCBam"; version="1.2.0"; sha256="0l8bh4zlrqzhp0gfqzjsqyl24i17r7mg834dq66815ziq3qxk1i0"; depends=[]; }; - SNAData = derive2 { name="SNAData"; version="1.16.0"; sha256="1m84i5w4kmwlfxaa4y5l1jia0k4mv5jg1amyhakyyp5vgznc8j6d"; depends=[graph]; }; - SNAGEEdata = derive2 { name="SNAGEEdata"; version="1.6.0"; sha256="0jbmjc6bkqzi8m6vkr9lk88497b42bqbvjcjm43im9m28y6dacnb"; depends=[]; }; - SNPhoodData = derive2 { name="SNPhoodData"; version="1.0.0"; sha256="1b784dvqahr36953km181m5fh6cp00v9yhqf2gpadgfzbxvfz2zr"; depends=[]; }; - SVM2CRMdata = derive2 { name="SVM2CRMdata"; version="1.2.0"; sha256="025zx7s86yry6j80n08cxai8if8wghvfbkx711ilgs480vd32j1v"; depends=[]; }; - SomatiCAData = derive2 { name="SomatiCAData"; version="1.8.0"; sha256="0knq9122zj2mb1ivv5r2i5jzrj0xr70i7yxkv176rkp7avbvxjlg"; depends=[]; }; - SomaticCancerAlterations = derive2 { name="SomaticCancerAlterations"; version="1.6.0"; sha256="0rrw0ya3hpj020wif3hhnaqprcbjyw859mn70p0ncgjrz5rwrcs9"; depends=[exomeCopy GenomicRanges IRanges stringr]; }; - SpikeIn = derive2 { name="SpikeIn"; version="1.12.0"; sha256="157a1ckrpx6n35w8c9ipv0dnx24y76bm1vpk7mkdlbc6wblw5lwx"; depends=[affy]; }; - SpikeInSubset = derive2 { name="SpikeInSubset"; version="1.10.0"; sha256="0bmwlc4zg2pf4da2gzys5sjbm3fzr6piw7jmbb44zxm0hgzjvx4g"; depends=[affy Biobase]; }; - TBX20BamSubset = derive2 { name="TBX20BamSubset"; version="1.6.0"; sha256="051iwkzynlqw5kncbkr92m4qim95h1gri0dymm1dw2b6xzni9kmr"; depends=[Rsamtools xtable]; }; - TCGAMethylation450k = derive2 { name="TCGAMethylation450k"; version="1.6.0"; sha256="1spgsvrlw63w04197s9a6hg7vxy3q1mjwvk649bzhi7d3y6fq055"; depends=[]; }; - TCGAcrcmRNA = derive2 { name="TCGAcrcmRNA"; version="0.104.0"; sha256="067hzawwylvh92hb6gg5wj6k4rlsmvz3n4i995g8kzxzwwirh8hp"; depends=[Biobase]; }; - TCGAcrcmiRNA = derive2 { name="TCGAcrcmiRNA"; version="0.104.0"; sha256="0dbmf3q5602fbp8jqkny33rnhvsvylhz2b5lfh6gkrqv33bc7frk"; depends=[Biobase]; }; - TargetScoreData = derive2 { name="TargetScoreData"; version="1.6.0"; sha256="1lrywj4q3ama0qhrbx0ij2h79gn3syln6zrfl0cbjj1qc0gs622w"; depends=[]; }; - TargetSearchData = derive2 { name="TargetSearchData"; version="1.8.0"; sha256="1f6lkhy2ykmd625cr0yiw7x4hzs1s00cygicl9bbpfg8bq5zd600"; depends=[TargetSearch]; }; - TimerQuant = derive2 { name="TimerQuant"; version="1.0.0"; sha256="0fqw9md30q11zvqi02paas7kmwwvg882wx678yv2928cn5ba32p6"; depends=[deSolve dplyr ggplot2 gridExtra locfit shiny]; }; - WES_1KG_WUGSC = derive2 { name="WES.1KG.WUGSC"; version="1.2.0"; sha256="0zad0d17w85pam99ib5x4a5459d3ds8rm5l8q09zsg1x5xkx387j"; depends=[]; }; - XhybCasneuf = derive2 { name="XhybCasneuf"; version="1.8.0"; sha256="0xbnx3093xz3ifiaj3kjl3kcnl1qgbpnii7ypz5apldf8jhji15z"; depends=[affy ath1121501cdf RColorBrewer tinesath1cdf]; }; - affycompData = derive2 { name="affycompData"; version="1.8.0"; sha256="0bzbnqz0f5vbi01hv7mjc7ajdd68hql046ly7vskma0wgrmqhqxj"; depends=[affycomp Biobase]; }; - affydata = derive2 { name="affydata"; version="1.18.0"; sha256="0vcmpy73wzhgqj6fg7qqdng3x7mi1pvdj563przsb301mviyyqyh"; depends=[affy]; }; - airway = derive2 { name="airway"; version="0.104.0"; sha256="14wc32azs9zcxw6q639xpxyzq6r1ws6c5zbf9fvisp4cfmma8z7f"; depends=[SummarizedExperiment]; }; - antiProfilesData = derive2 { name="antiProfilesData"; version="1.6.0"; sha256="0j7rsxkl9wpp7hbgm8jkmc16m842839x5adnlrqikz64r292ihip"; depends=[Biobase]; }; - bcellViper = derive2 { name="bcellViper"; version="1.6.0"; sha256="027cznns57mvqphkbw3z39lywv9f3cwyrc5cc5nr8271s9cxgvzq"; depends=[Biobase]; }; - beadarrayExampleData = derive2 { name="beadarrayExampleData"; version="1.8.0"; sha256="0xsz00i1rsm770fpx705bp0lhxq789i7fyrh6nxgb3dvymm6sfnl"; depends=[beadarray Biobase]; }; - beta7 = derive2 { name="beta7"; version="1.8.0"; sha256="1ifrpg46dmxmaxr9vzff837skqwdb6672m9w238lnml4y2rmvxxh"; depends=[marray]; }; - bladderbatch = derive2 { name="bladderbatch"; version="1.8.0"; sha256="0r5l091dnlh17k4a75dkwjkpq0rjwl2pkp5r4wk3qf34q6dg2lin"; depends=[Biobase]; }; - blimaTestingData = derive2 { name="blimaTestingData"; version="0.104.0"; sha256="03v192y9b07h4jlj9vjfzwpnlk7xczcqlwrpjpgand633769hanz"; depends=[]; }; - breastCancerMAINZ = derive2 { name="breastCancerMAINZ"; version="1.8.0"; sha256="0zn7s7bppvynnch1fbd3g1hax5y0bw80bhnqwsksm2kjj6b7p4f9"; depends=[]; }; - breastCancerNKI = derive2 { name="breastCancerNKI"; version="1.8.0"; sha256="14pk3gi3xn14vs49ay5rxn5mjpc033h5rln8646lljyng7i5j137"; depends=[]; }; - breastCancerTRANSBIG = derive2 { name="breastCancerTRANSBIG"; version="1.8.0"; sha256="0gy90309nvwhhx8hvng4rf1nmvfkgljmvr6z2xd5j2j6l3waii2d"; depends=[]; }; - breastCancerUNT = derive2 { name="breastCancerUNT"; version="1.8.0"; sha256="1k8l3hgnnzw3qlyb57ys81w2v9hk1rr20p0w3bcd33nrhacr2nh0"; depends=[]; }; - breastCancerUPP = derive2 { name="breastCancerUPP"; version="1.8.0"; sha256="0w8nmly2gcvw3y628k3ckfkv19fq8vxhf15bqw8z5qq974rp2vis"; depends=[]; }; - breastCancerVDX = derive2 { name="breastCancerVDX"; version="1.8.0"; sha256="0vx2bqh5asjjdy1jnk0n22adanmmb4s3hdxg8645y121mprrg2jp"; depends=[]; }; - bronchialIL13 = derive2 { name="bronchialIL13"; version="1.8.0"; sha256="0mbjpx0w5bqbb9vc0x7zl78m6y0gkcad1abfycjlpr7yhf3i1k76"; depends=[affy]; }; - bsseqData = derive2 { name="bsseqData"; version="0.8.0"; sha256="0rlls31yyzkisx61y0i15qgkc5ixk0xkd2ix03cv4zz1fv0iyz2x"; depends=[bsseq]; }; - cMap2data = derive2 { name="cMap2data"; version="1.6.0"; sha256="0zwzynw8i72g2zy9kfipz3rik1n7c590bxxniwxz884fafwgn5yw"; depends=[]; }; - cancerdata = derive2 { name="cancerdata"; version="1.8.0"; sha256="1cdiqx8f5d2af46mnad5zjaazxw2qh68h0hg4sj8p8xxjf2l1d3f"; depends=[Biobase]; }; - ccTutorial = derive2 { name="ccTutorial"; version="1.8.0"; sha256="0lvsl9127djdrkpk5c4n570sr06yj5x24lfbhrvy4jk8qa4g1qx3"; depends=[affy Biobase Ringo topGO]; }; - ceu1kg = derive2 { name="ceu1kg"; version="0.8.0"; sha256="1cm2myjmrn2kiwgfjpkslz0s6l8qvs8g3y0jbfckp31sd1211kkh"; depends=[Biobase GGBase GGtools]; }; - ceu1kgv = derive2 { name="ceu1kgv"; version="0.12.0"; sha256="165qp5cfs87ds7sx525fpj5cwisl4520b911l0xxmgcvhz6gjyi5"; depends=[Biobase GGBase]; }; - ceuhm3 = derive2 { name="ceuhm3"; version="0.8.0"; sha256="10plz831m2vynwn5x4kh93iwcwkn6x39q9qg25lvlrj8j3mqgjmg"; depends=[Biobase GGBase GGtools]; }; - cgdv17 = derive2 { name="cgdv17"; version="0.8.0"; sha256="0wjx4072gpsv6w1x7d5q0qya0ism5xw13zl8d1m49jhszk2kns1j"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors VariantAnnotation]; }; - charmData = derive2 { name="charmData"; version="1.6.0"; sha256="0qy3dcx745diza5xy6f1qipnnawqx20vp6p0piy9wvwvgalcx886"; depends=[charm pd_charm_hg18_example]; }; - cheung2010 = derive2 { name="cheung2010"; version="0.8.0"; sha256="0qrq5k8gpsvqv5vhq67lgql69x7gqsqyfrs87ih8jir1nhgyrmzy"; depends=[AnnotationDbi Biobase GenomicRanges GGtools hgfocus_db]; }; - chipenrich_data = derive2 { name="chipenrich.data"; version="1.6.0"; sha256="04v1zzn7balic5hxlxdgqxpgg0pbsyg5s0ivhn232c3qbidh480g"; depends=[BiocGenerics GenomicRanges IRanges]; }; - cnvGSAdata = derive2 { name="cnvGSAdata"; version="1.6.0"; sha256="1ys4sxp4biqb8bgqds9y22kiiwxhbv3p32vrbj1vm9fn3isphqr8"; depends=[cnvGSA]; }; - colonCA = derive2 { name="colonCA"; version="1.12.0"; sha256="0nf4nfjymm0vw7zdi0wpcn8kc49kfangnsfajvarpwjikff2bcsl"; depends=[Biobase]; }; - curatedBladderData = derive2 { name="curatedBladderData"; version="1.6.0"; sha256="0rs2fslz39nyxs4v0zjldlascc0rnpzzisxhrnb913y72wlk7fad"; depends=[affy]; }; - curatedBreastData = derive2 { name="curatedBreastData"; version="1.2.0"; sha256="01q37mlxlh0sdnb8ilsr6s5k40awgcg0n5ggj056dcna9nfvqi74"; depends=[Biobase BiocStyle ggplot2 impute XML]; }; - curatedCRCData = derive2 { name="curatedCRCData"; version="2.2.0"; sha256="0p4jgmg3234siglzf1klzq70vgrsnxcz4w2fw16h34m7jkrhiqas"; depends=[BiocGenerics nlme]; }; - curatedOvarianData = derive2 { name="curatedOvarianData"; version="1.8.0"; sha256="1fdwns0srpkvzvs87zq7wq6a3a324d6l8mjxncryxdcbgjfv3fb8"; depends=[affy BiocGenerics]; }; - davidTiling = derive2 { name="davidTiling"; version="1.10.0"; sha256="06kjzkgqigfnd44yd9czccqn8nill4v3x3dfk7kmzbz7lmmrdhx1"; depends=[Biobase GO_db tilingArray]; }; - derfinderData = derive2 { name="derfinderData"; version="0.104.0"; sha256="0biqbxm3fcqxsmv3bkxb66cpv54iswpsjizh7i6qmilw20fcrdm6"; depends=[]; }; - diggitdata = derive2 { name="diggitdata"; version="1.2.0"; sha256="190ppd35dg559g557kwvd0kpl900x9jvarflhxq47p9zgg35yrvf"; depends=[Biobase viper]; }; - dressCheck = derive2 { name="dressCheck"; version="0.8.0"; sha256="03k7m4fr6ac1pfjz86sgz8ywmvxdxjxpd4rrdgix8bn88mfw9qyi"; depends=[Biobase]; }; - dsQTL = derive2 { name="dsQTL"; version="0.8.0"; sha256="0qh73b5xbrcdmp3kszykiqiha8s40r0npsajc1h0m7xh26b81d90"; depends=[Biobase GGBase SummarizedExperiment]; }; - dyebiasexamples = derive2 { name="dyebiasexamples"; version="1.8.0"; sha256="0rssxjpjb7aqkkm6mg1s7df8kzbxiww9yfdljif9ph7s0svi4b5v"; depends=[GEOquery marray]; }; - ecoliLeucine = derive2 { name="ecoliLeucine"; version="1.10.0"; sha256="0vv5ffk08kfqahsz9ib7144hywcqmvm30rpgff18kvqz2ri4391a"; depends=[affy ecolicdf]; }; - encoDnaseI = derive2 { name="encoDnaseI"; version="0.8.0"; sha256="1n6n5jfaqh1gr19grvxkpbs30314s524wfy6ppfqczxw00yrsvqk"; depends=[Biobase GGBase GGtools lattice]; }; - estrogen = derive2 { name="estrogen"; version="1.16.0"; sha256="0r4gb1vnq6nk97fqkhr9x7lq6jljpkmk7q95s0hwjnyavpwwi5qm"; depends=[affy]; }; - faahKO = derive2 { name="faahKO"; version="1.10.0"; sha256="0dkpzkdlpi757h6kkv02j74nxwz770l7jfmdz6hh6np0c27yrlqk"; depends=[xcms]; }; - fabiaData = derive2 { name="fabiaData"; version="1.8.0"; sha256="1syxcgmvb00a4k1l3c17rsmllsp4baxpqw85gvzlkix038bdwqcg"; depends=[Biobase]; }; - facopy_annot = derive2 { name="facopy.annot"; version="0.104.0"; sha256="139wd2w7mmrwi69h5mlf73zs3zaqr0kcjv116pd2r7b1dryla9y5"; depends=[]; }; - facsDorit = derive2 { name="facsDorit"; version="1.12.0"; sha256="0dlbjvzalixpxcxwls6wrlzz4lrmsxs23g1yvin940al9hli612d"; depends=[prada]; }; - ffpeExampleData = derive2 { name="ffpeExampleData"; version="1.8.0"; sha256="19vf4q4nqk937gvn8ca4kvisyxw375xlj9g238xmlh1z33bqak7y"; depends=[lumi]; }; - fibroEset = derive2 { name="fibroEset"; version="1.12.0"; sha256="1brnc0vigpi711yc1yq69x39sksnqd26dzip174ih66hp0if3rsm"; depends=[Biobase]; }; - fission = derive2 { name="fission"; version="0.104.0"; sha256="0lbzl0r66q8h9x41167zhx3zdmf6wq1f7z1hxmq8inpl0ydrynnm"; depends=[SummarizedExperiment]; }; - flowFitExampleData = derive2 { name="flowFitExampleData"; version="1.6.0"; sha256="0ngq0khy7f7w41mj89fdrrd5lpxznnxg53x6zfgc6mx0vm1q13ak"; depends=[flowCore]; }; - flowWorkspaceData = derive2 { name="flowWorkspaceData"; version="2.6.1"; sha256="1y97xym505rpgsyi1nbsazaqwfxrkmp664pmdlfvp8a3l963bs2n"; depends=[]; }; - frmaExampleData = derive2 { name="frmaExampleData"; version="1.6.0"; sha256="172bvi6v824j82cr2y9y5zvdgzfwk4kdw0r54jqjgvp2kw4v55bx"; depends=[]; }; - gageData = derive2 { name="gageData"; version="2.8.0"; sha256="1h2gyn9nn8198qd99bdpf7r9f71l76yzzcagbg9z9qjhpc1nwllq"; depends=[]; }; - gaschYHS = derive2 { name="gaschYHS"; version="1.8.0"; sha256="0097vvw6z3ryiv11jvapih2r588ix7qdizmq5g3cc1s5dqrmaf02"; depends=[Biobase]; }; - gatingMLData = derive2 { name="gatingMLData"; version="2.10.0"; sha256="1ql5s1p4phhcc9lh3knrgnazkpxlxhvwpvxi0d978g6mjlbbprs2"; depends=[]; }; - gcspikelite = derive2 { name="gcspikelite"; version="1.8.0"; sha256="06k158hh3pyn9fw49njar3aj71f12pgkm2yaljnvlnabgv7r0a84"; depends=[]; }; - geneLenDataBase = derive2 { name="geneLenDataBase"; version="1.6.0"; sha256="0zijh0s2dp1rf7z4rs8afdx18gqgsll090vclckf30jy3jy7d0ri"; depends=[GenomicFeatures rtracklayer]; }; - genomationData = derive2 { name="genomationData"; version="1.2.0"; sha256="08p1n2gp3csw7jvlkq5h3r64ix08n7kniq508w28nc0mms3pa4vn"; depends=[]; }; - geuvPack = derive2 { name="geuvPack"; version="1.2.0"; sha256="17wy3fkwq16kg3zcm30b06p0a6xwpjbjqrd2rz42ypw7d7danc3h"; depends=[SummarizedExperiment]; }; - geuvStore = derive2 { name="geuvStore"; version="1.2.0"; sha256="14xm3d808mzbvjliazn2rzz9l98b44h4x4s50ass2mfr470k79fs"; depends=[BatchJobs GenomicRanges gQTLBase]; }; - ggtut = derive2 { name="ggtut"; version="0.7.0"; sha256="0vpqzanzx3mwaz0dz29s5k9l0nly004sn3f5rjx7z8ww67ka4ii6"; depends=[cheung2010 ChIPpeakAnno ff GenomicFeatures GenomicRanges GGdata GGtools hmyriB36 Rsamtools SNPlocs_Hsapiens_dbSNP_20120608 snpStats]; }; - golubEsets = derive2 { name="golubEsets"; version="1.12.0"; sha256="0y861yr3b9c5rxi1x9796ka9bycpkwfpj7n10ikxkqggip02044j"; depends=[Biobase]; }; - grndata = derive2 { name="grndata"; version="1.2.0"; sha256="042cm5imcb1fzmm7cn4lyd8isq9yddrnvdmqv7gzklrpplhlcfa5"; depends=[]; }; - gskb = derive2 { name="gskb"; version="1.2.0"; sha256="0b2vd4vn1khk4cd3pdcxwbd26srk3w3zdlk864vhgha5n9wb89kb"; depends=[]; }; - h5vcData = derive2 { name="h5vcData"; version="1.104.0"; sha256="1jhr6gijva7498hm2mzi94ag0wx8qx16nf7l454v631px12b2hra"; depends=[]; }; - hapmap100khind = derive2 { name="hapmap100khind"; version="1.12.0"; sha256="19g5krckkxfnk2mbvlk2agwn2n1pwx6m343nngr07lysxjdddsz3"; depends=[]; }; - hapmap100kxba = derive2 { name="hapmap100kxba"; version="1.12.0"; sha256="038vf5xfkn266f5w0hffdn7f8xi4h4dg2fyq1lj7b8mw3hzsbd8s"; depends=[]; }; - hapmap500knsp = derive2 { name="hapmap500knsp"; version="1.12.0"; sha256="1xz4l3nj60z10n0ia6vi6b1sc5crkl6my0axjrlc0qq7jzxpvyf2"; depends=[]; }; - hapmap500ksty = derive2 { name="hapmap500ksty"; version="1.12.0"; sha256="1qip3qzri1ihms528wff1y9ci6zq0j3czbcs7hqiyz57yxi4phxl"; depends=[]; }; - hapmapsnp5 = derive2 { name="hapmapsnp5"; version="1.12.0"; sha256="1xb9jv4viy1q1bvcz795j25fa9ss3xrrplz3rykbnis5h87n6lbj"; depends=[]; }; - hapmapsnp6 = derive2 { name="hapmapsnp6"; version="1.12.0"; sha256="0a3qshi8024n7bc8g9h3qivp6xzkd40xsll948jldzid49scqdmi"; depends=[]; }; - harbChIP = derive2 { name="harbChIP"; version="1.8.0"; sha256="08kr48nvrmphj7sj9nbj0mj1hyl97pp0g7qcnr6fb8vn5lvyriag"; depends=[Biobase Biostrings IRanges]; }; - healthyFlowData = derive2 { name="healthyFlowData"; version="1.8.0"; sha256="1wj48wagn93g7w5apl4jxii34wxd7dhiya965bkbjj6h2yhwykfd"; depends=[flowCore]; }; - hgu133abarcodevecs = derive2 { name="hgu133abarcodevecs"; version="1.8.0"; sha256="0ccrqiw4348vg3pw0pl4bi846ax7spi0bxrs44gp4bsjp7amn1s9"; depends=[]; }; - hgu133plus2barcodevecs = derive2 { name="hgu133plus2barcodevecs"; version="1.8.0"; sha256="17lrqvdmqc363jqr5chp3yp452hi5592d33hznira1ra9xjdk30c"; depends=[]; }; - hgu2beta7 = derive2 { name="hgu2beta7"; version="1.10.0"; sha256="0ylz3l54ip7rqiwlbzfnk65hhm4v5rd9mi5g1r97n9k6gyfd692d"; depends=[]; }; - hmyriB36 = derive2 { name="hmyriB36"; version="1.6.0"; sha256="033afw26ng2vc0fj3ipljmrq8vm0q5nbr7gh78i5vmpnkh4d5wgp"; depends=[Biobase GGBase]; }; - humanStemCell = derive2 { name="humanStemCell"; version="0.10.0"; sha256="18fwmsf2yh4q12ca7h78lk85rcf3a3l57v0hm72yw3zjdhhakfrp"; depends=[Biobase hgu133plus2_db]; }; - ind1KG = derive2 { name="ind1KG"; version="0.8.0"; sha256="10yiqj0c4vclblblkr0hwair1hyyrlp5z81y72vcjgv4wkfmxsbk"; depends=[chopsticks]; }; - iontreeData = derive2 { name="iontreeData"; version="1.6.0"; sha256="1bl2f2kk930bry8ibl3234s3ijszxfm0xhcqjay771xcfhf9c14q"; depends=[]; }; - kidpack = derive2 { name="kidpack"; version="1.12.0"; sha256="0zvdm8xyn7xwaf1qrlaizh1aqdwbicnm0l7kr554k651plcazjd1"; depends=[Biobase]; }; - leeBamViews = derive2 { name="leeBamViews"; version="1.6.0"; sha256="16g1nz8mxr31ww39y7aicvqrhlrxwbdvcnz6cl105md43f10h7v2"; depends=[Biobase BSgenome GenomicAlignments GenomicRanges Rsamtools]; }; - leukemiasEset = derive2 { name="leukemiasEset"; version="1.6.0"; sha256="1jfp6j60ic07jqmmcmp2cp0ha42xk8b6jldviq5463yf232mgkg3"; depends=[Biobase]; }; - lumiBarnes = derive2 { name="lumiBarnes"; version="1.10.0"; sha256="0r189bh6ysarqicrsi2s5v3d0wpl0y3ycpa85igsx6yq2jsv1hlz"; depends=[Biobase lumi]; }; - lungExpression = derive2 { name="lungExpression"; version="0.8.0"; sha256="14k7xk8817vwf6vnvc2fjk4jv876s4da8d3fi84cz3hgh51rl7rz"; depends=[Biobase]; }; - mAPKLData = derive2 { name="mAPKLData"; version="1.2.0"; sha256="03x2yzpr6xr19k7kk52x6zlpjkfjhhfly1xsvdijrma6dc0rzg8a"; depends=[]; }; - mammaPrintData = derive2 { name="mammaPrintData"; version="1.6.0"; sha256="1xdhww79aig0a792akwh8mgzl7qagncl26kwv8fn4hw5vrjyxmyg"; depends=[]; }; - maqcExpression4plex = derive2 { name="maqcExpression4plex"; version="1.14.0"; sha256="1h50zfm49rihda3agfb4ldlaaw651k82cfjranzp27h089glskns"; depends=[]; }; - metaMSdata = derive2 { name="metaMSdata"; version="1.6.0"; sha256="1qs5z3pbb6y04fk633vlps54gr6vlkvwl4qzgx4g7jxmlnm6w5sl"; depends=[]; }; - miRNATarget = derive2 { name="miRNATarget"; version="1.8.0"; sha256="1ahp2w6xcpav6virrzcb11df2wc5phhqarlwq03i2s284wx27bxa"; depends=[Biobase]; }; - miRcompData = derive2 { name="miRcompData"; version="1.0.0"; sha256="06chd7drzqnpbwnkc22mii1k3bv6dk96nl0hm1fg7hv2bc83j1sn"; depends=[]; }; - minfiData = derive2 { name="minfiData"; version="0.12.0"; sha256="10ny2i88w87zlizla2jx1bvrnhq9f245ggxdgvi6slrlp35l2s68"; depends=[IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest minfi]; }; - minionSummaryData = derive2 { name="minionSummaryData"; version="1.0.0"; sha256="0zk9xfyxbdzxpz36ly1nsqrw29zmxqs71x1q3iks0p9jd60iwwrv"; depends=[]; }; - mitoODEdata = derive2 { name="mitoODEdata"; version="1.6.0"; sha256="07dpak6jdw7mz5jjnysyg82wikjxnk8z4wngfhdfzl0wxg23pbzx"; depends=[]; }; - mosaicsExample = derive2 { name="mosaicsExample"; version="1.6.0"; sha256="02lcjb38gf0kr2s7ydpzh1slh6d1b9vfgdk4fab2nb1k6g6nd6fm"; depends=[]; }; - mouse4302barcodevecs = derive2 { name="mouse4302barcodevecs"; version="1.8.0"; sha256="0dxdg11shs4lj4vb9ja7i9v9xsdpw63ymhzlfq46claydmxgkcyz"; depends=[]; }; - msd16s = derive2 { name="msd16s"; version="0.104.0"; sha256="0xh438ayq6pxxwmc79z4cr9mw8ribh09b9x43jcka1nn9g6vka46"; depends=[Biobase metagenomeSeq]; }; - msdata = derive2 { name="msdata"; version="0.8.0"; sha256="0dl7q8r2bxqx130w0d3d860svdsnjwhsxq709xk3ir4zn6kdn2qz"; depends=[]; }; - mtbls2 = derive2 { name="mtbls2"; version="1.0.0"; sha256="0fqmzvxznik2abrh12q4ifq3yxk6nvzf1lx2mnw0cwqgndma0vcn"; depends=[]; }; - mvoutData = derive2 { name="mvoutData"; version="1.6.0"; sha256="0whmdrlnxcm4h03gh9xm386cjir6y86k1kzdl3z50y7ydzl0zkyy"; depends=[affy Biobase lumi]; }; - pRolocdata = derive2 { name="pRolocdata"; version="1.8.0"; sha256="0ndwz3z7jzyr6ac1b8cq6j0qfm8s28hpv42w5bsgp2vp85prqa1d"; depends=[Biobase MSnbase]; }; - parathyroidSE = derive2 { name="parathyroidSE"; version="1.8.0"; sha256="1g80lgbla7dpd1vcvsqgmwqcp71mwnsyps6qpgmyhyq8z5jxgkmb"; depends=[SummarizedExperiment]; }; - pasilla = derive2 { name="pasilla"; version="0.10.0"; sha256="1ydiywvw8afs5j109dnbiq6dp5inm2al8rivfgdfiqbi7w0a4iqz"; depends=[]; }; - pasillaBamSubset = derive2 { name="pasillaBamSubset"; version="0.8.0"; sha256="0x4n9hqpfgnzpbsa7arzav027n0yyglljdaflzy0z8vvypp9skri"; depends=[]; }; - pcaGoPromoter_Hs_hg19 = derive2 { name="pcaGoPromoter.Hs.hg19"; version="1.6.0"; sha256="1kzl95mw08162widlycg3g1230c2dsf3cbvai1pb6sc4s1sb5m1k"; depends=[]; }; - pcaGoPromoter_Mm_mm9 = derive2 { name="pcaGoPromoter.Mm.mm9"; version="1.6.0"; sha256="0h6yg6glzsncq7k72vn3l8gxihs3r3kq7420c0sqbp2pljkcycn7"; depends=[]; }; - pcaGoPromoter_Rn_rn4 = derive2 { name="pcaGoPromoter.Rn.rn4"; version="1.6.0"; sha256="087fq848yyq5vl1sv5984qwbjk7navdx82gqwq4446035cv409x5"; depends=[]; }; - pd_atdschip_tiling = derive2 { name="pd.atdschip.tiling"; version="0.8.0"; sha256="08f4chypg6hkgi7idq3709zij0xpw3k2rj8gkcyld4s141nzv115"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pepDat = derive2 { name="pepDat"; version="0.104.0"; sha256="146wha2frjy8b9b6nkghp7aqzrilgircglpq1k0knzndnan4k4mq"; depends=[GenomicRanges]; }; - ppiData = derive2 { name="ppiData"; version="0.8.0"; sha256="09f14jlrbc9pqna1a5lhd9l32m4jhjgghhdczlc7kni75mzsb7ii"; depends=[AnnotationDbi graph]; }; - prebsdata = derive2 { name="prebsdata"; version="1.6.0"; sha256="0gfff1fafp5jyyfh71l7lvddm0xbx215hac92mwlkmksi8jz3f74"; depends=[]; }; - pumadata = derive2 { name="pumadata"; version="2.6.0"; sha256="1lw6jii68pzrbr3cgb0zsfbjflz526l3r5qrpbnavz0szjca4h5y"; depends=[affy Biobase oligo puma]; }; - rRDPData = derive2 { name="rRDPData"; version="0.104.0"; sha256="0700xlvfkgyrdgxyq5l0dlq2p3qf51jzamp28qqhs95440cyg26l"; depends=[rRDP]; }; - rcellminerData = derive2 { name="rcellminerData"; version="1.2.2"; sha256="1xaq03x8qxbczq0g880vdgria93s5bq2hn2nx5gz3b1qkkwb1sx9"; depends=[Biobase]; }; - rheumaticConditionWOLLBOLD = derive2 { name="rheumaticConditionWOLLBOLD"; version="1.8.0"; sha256="161psq421pkdd9kzfk62633sj4cql2q0wjwzivjph9cm228238mp"; depends=[]; }; - seq2pathway_data = derive2 { name="seq2pathway.data"; version="1.2.0"; sha256="03x8v75s6v3yyycgk6zwsh4j2mnsxndgbxmcw8q2a57q13y58bwi"; depends=[]; }; - seqCNA_annot = derive2 { name="seqCNA.annot"; version="1.6.0"; sha256="1avgc0qm26r18pxrdm3fp2wrqzcapind4cb88d4z4v2gmp8y04sh"; depends=[]; }; - seqc = derive2 { name="seqc"; version="1.4.0"; sha256="0vkw4ly21jx1lqn6hhdi43mbq7idsxb4a21inwdv5fzm7vdkplb3"; depends=[]; }; - serumStimulation = derive2 { name="serumStimulation"; version="1.6.0"; sha256="14sncdp7zb0ddifr6bcy14nxp8h9dvy3gy354i74h86yvkwdv9s8"; depends=[]; }; - seventyGeneData = derive2 { name="seventyGeneData"; version="1.6.0"; sha256="0l9nkprrvkdi764b9l3rckd7zqv13y55m4s37ls3xp63i9yddqm9"; depends=[]; }; - shinyMethylData = derive2 { name="shinyMethylData"; version="0.104.0"; sha256="0w8r5g3925jy6pb5dm916lns9h7qgwy2vwnl87dwa5ff17rfmj81"; depends=[]; }; - simpIntLists = derive2 { name="simpIntLists"; version="1.6.0"; sha256="014sx5jca37jb97wblc47vspxx7iwi6vpzwrgjl22fvv7p0claj7"; depends=[]; }; - stemHypoxia = derive2 { name="stemHypoxia"; version="1.6.0"; sha256="0b25q1wni5yfjqxmhkjddnh2301rnx692n8n4ghv4l6sbq5x2kz1"; depends=[]; }; - stjudem = derive2 { name="stjudem"; version="1.10.0"; sha256="18k39mj374c2lfvjkvnzmm2phnisq8dxmsg0jgarzwqxc6740xak"; depends=[]; }; - synapterdata = derive2 { name="synapterdata"; version="1.8.0"; sha256="0ivs32fv6hfna124bmc5bbj1pj9jw15qays105djwidsik0q4ml2"; depends=[synapter]; }; - systemPipeRdata = derive2 { name="systemPipeRdata"; version="1.0.1"; sha256="0zsqqsbln5isipr186af73084bn7yq6c4z7mni4pckwh63q45w2p"; depends=[BiocGenerics]; }; - tinesath1cdf = derive2 { name="tinesath1cdf"; version="1.8.0"; sha256="1wbnxqmr40iy6hcpks7fafmlwzi6q1nc87494kkcsxcg698317dk"; depends=[]; }; - tinesath1probe = derive2 { name="tinesath1probe"; version="1.8.0"; sha256="0aynz111vj0zki74c5bp3f8rvmm7in52ww9aknfszgg6gi02a382"; depends=[AnnotationDbi]; }; - tweeDEseqCountData = derive2 { name="tweeDEseqCountData"; version="1.8.0"; sha256="042z8g1mb5hiziqqbjngca1vi5mvgjny7fhx6q1z0nxrymg4yay9"; depends=[Biobase]; }; - waveTilingData = derive2 { name="waveTilingData"; version="1.6.0"; sha256="0xx60f6gvcqvj6m5wqh7mjcf0skbzz5w5bchcalmhgy56l7229a1"; depends=[]; }; - yeastCC = derive2 { name="yeastCC"; version="1.10.0"; sha256="07nhfambydc613smwajcv8qiwg0rc8zvjmyfcvi91nz49xr3cygq"; depends=[Biobase]; }; - yeastExpData = derive2 { name="yeastExpData"; version="0.16.0"; sha256="1lzz9kp9raihi3n5p05saz549kblx9k1hy9fwvh73l91gm2lmazx"; depends=[graph]; }; - yeastGSData = derive2 { name="yeastGSData"; version="0.8.0"; sha256="1vzfl8ykwwvjs58w5h8myrqfj67qpaf1zaf714r70pzx9zc1slpp"; depends=[]; }; - yeastNagalakshmi = derive2 { name="yeastNagalakshmi"; version="1.6.0"; sha256="0d3ixzas7m4xdc20996di8x48z661i213rhkd4l6hqb4hdjb6mm8"; depends=[]; }; - yeastRNASeq = derive2 { name="yeastRNASeq"; version="0.8.0"; sha256="1nv31zdy2br27qskz5dwxnpz2zgi0mx2fp8ddhbffrkww8zcha4m"; depends=[]; }; - yri1kgv = derive2 { name="yri1kgv"; version="0.12.0"; sha256="07lmji9sljscwqd96bcllwc3hqzrl8mwj9z7fc6kjaam491iz09f"; depends=[Biobase GGBase]; }; - zebrafishRNASeq = derive2 { name="zebrafishRNASeq"; version="0.104.0"; sha256="11z6p4f8nmgjas085dvb2fnlsfb8qbbfh0jzx650sfkb2fgqqr6l"; depends=[]; }; + ABAData = derive2 { name="ABAData"; version="1.2.2"; sha256="0wp44a5i8qdg2jnxg1fvc9i79m6zdcr0027cp4fha11l1syj6dh7"; depends=[]; }; + ALL = derive2 { name="ALL"; version="1.14.0"; sha256="07prs6q7qahv763ldwf9msyglbs0yrxpr0l95aykvflyyzlkdj04"; depends=[Biobase]; }; + ALLMLL = derive2 { name="ALLMLL"; version="1.12.0"; sha256="1h4747m67sc7d6hif42dv62y7ffzv92rili95ajp208i7j4451jp"; depends=[affy]; }; + ARRmData = derive2 { name="ARRmData"; version="1.8.0"; sha256="0jkzvn9kg2laxng4gkgpx7x30zx542y1z0ywvidy8w7xa99d1c6q"; depends=[]; }; + Affyhgu133A2Expr = derive2 { name="Affyhgu133A2Expr"; version="1.8.0"; sha256="08r8cr8gddbsl0xgbvm9vrdazzg874vkglvy3ji5y88nph9gli5x"; depends=[]; }; + Affyhgu133Plus2Expr = derive2 { name="Affyhgu133Plus2Expr"; version="1.6.0"; sha256="0wn61kslpxp50fih4hrciig5hf0ydafabf6lzn8nlpamkr54gcw8"; depends=[]; }; + Affyhgu133aExpr = derive2 { name="Affyhgu133aExpr"; version="1.10.0"; sha256="1qp649gli32h6xffw1sfjsfpxmm3wfn870sx6sgfnyxkyhr4fa4y"; depends=[]; }; + AffymetrixDataTestFiles = derive2 { name="AffymetrixDataTestFiles"; version="0.10.0"; sha256="1id05rc0q2nlazc4ndjmd8blwzd1xhk06rwc2sv755v0amprn4iy"; depends=[]; }; + Affymoe4302Expr = derive2 { name="Affymoe4302Expr"; version="1.10.0"; sha256="0pqm0v6frq0xjkdjbxgyrcipjkyp47r652gn20wc0y5kpkqs0pqq"; depends=[]; }; + AmpAffyExample = derive2 { name="AmpAffyExample"; version="1.12.0"; sha256="04ih81msr17zwl00n36xx2l180d6q6q4cbrr2mdwr6ppfxq60g3w"; depends=[affy]; }; + AneuFinderData = derive2 { name="AneuFinderData"; version="1.0.2"; sha256="0n28m8x6kdkgqrzx468zrssy3a5qla294xs6mqxi5ghsppdasxwh"; depends=[]; }; + AshkenazimSonChr21 = derive2 { name="AshkenazimSonChr21"; version="1.2.2"; sha256="032f48jq7qm94g45lv1kabjc6362xfhr63dr0spsh17vhipbj06n"; depends=[]; }; + BeadArrayUseCases = derive2 { name="BeadArrayUseCases"; version="1.10.0"; sha256="026fgqgb5b7s09zjb93qpvn9lashvcmw4dabqi80vmcslw1qynrm"; depends=[beadarray GEOquery limma]; }; + CCl4 = derive2 { name="CCl4"; version="1.9.0"; sha256="1byiayjf1jbqj1xfarblga5523gqnivr0m14pd1flrmx4d0z22kb"; depends=[Biobase limma]; }; + CLL = derive2 { name="CLL"; version="1.12.0"; sha256="1ni36n8cadlwybg9crnw1kq6xp7l0l8y6mwnjqlqzykxn5x16w08"; depends=[affy Biobase]; }; + COHCAPanno = derive2 { name="COHCAPanno"; version="1.8.0"; sha256="1wi4mg9q3kg0rglkz2i630y2w8p2hk35k013iav6r7k02n9pb4xz"; depends=[]; }; + CONFESSdata = derive2 { name="CONFESSdata"; version="1.0.0"; sha256="12q519wik54dyw2svviib04w0z5c884iiskk0v7qyhx9kydkmkfc"; depends=[]; }; + COPDSexualDimorphism_data = derive2 { name="COPDSexualDimorphism.data"; version="1.8.0"; sha256="00zhw6iyak3z38s1xgh3mdd1kb166r0vm0s5np4xkp93pg6bcj7i"; depends=[]; }; + COSMIC_67 = derive2 { name="COSMIC.67"; version="1.8.2"; sha256="0x09csirjgsww38r339cpcg446xx4c5nfsifvfyvzdxxdfjq42xa"; depends=[GenomicRanges SummarizedExperiment VariantAnnotation]; }; + CRCL18 = derive2 { name="CRCL18"; version="0.106.0"; sha256="1lfhb82hkv4ylgwdzpmlsk4rk66ingp3p2zd7c43w6rawald3s2y"; depends=[Biobase]; }; + CardinalWorkflows = derive2 { name="CardinalWorkflows"; version="1.4.0"; sha256="042456sy3bikv66i2j6zidk9s9bjgd2hl481jy2jzcjg9jqzkrvr"; depends=[Cardinal]; }; + ChAMPdata = derive2 { name="ChAMPdata"; version="1.10.0"; sha256="1i4ifwiim97ap0n7ccyy3w0yh8bf22bm1laif0vb1y8cibj5nwnc"; depends=[BiocGenerics GenomicRanges]; }; + ChIPXpressData = derive2 { name="ChIPXpressData"; version="1.10.0"; sha256="1v0h5k7z3hvwkf56xx42s8y1dx4bmwxcnl16q0pmfnakimvbm1bc"; depends=[bigmemory]; }; + ChimpHumanBrainData = derive2 { name="ChimpHumanBrainData"; version="1.10.0"; sha256="0vyvzdr6iznp82njz72vw7c5amw7pgiswv7a3yv4iiz6ilcp1lb2"; depends=[affy hexbin limma qvalue statmod]; }; + ConnectivityMap = derive2 { name="ConnectivityMap"; version="1.8.0"; sha256="1b8x7g8vzd6dmfpg5rih41bpz1srp0ykwkiz6fvwqxcic3wwjhyr"; depends=[]; }; + CopyNumber450kData = derive2 { name="CopyNumber450kData"; version="1.8.0"; sha256="1f7g07iks077b5wis4p960kf1smwwcqv8hbwqqkix5gan5hwy09g"; depends=[IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest minfi]; }; + CopyhelpeR = derive2 { name="CopyhelpeR"; version="1.4.0"; sha256="1z4bcakmi84jgiz1c46g2v6yqmxdzy9n02adhfzbh8jgzh2apq5h"; depends=[]; }; + DAPARdata = derive2 { name="DAPARdata"; version="1.0.1"; sha256="078dcj8cjj7iqjc5i6q1d7bi1frvix8f8hhmb4x20670fynda3pr"; depends=[knitr MSnbase]; }; + DLBCL = derive2 { name="DLBCL"; version="1.12.0"; sha256="04rg3c1mh5kl0dkm3wyxv5izm6910j6zin8lw21dbgnvnf7v4fg3"; depends=[Biobase]; }; + DMRcatedata = derive2 { name="DMRcatedata"; version="1.8.2"; sha256="0pl3wj2nvjhp84cvvh2yqdqqsa4b61wyqmihw8xg4qkh78dnizqk"; depends=[GenomicRanges]; }; + DREAM4 = derive2 { name="DREAM4"; version="1.8.0"; sha256="1qnq24lrpwrlcn3x1f54mb6j3qpa6rjcxn1r326dabryphg2j27d"; depends=[SummarizedExperiment]; }; + DeSousa2013 = derive2 { name="DeSousa2013"; version="1.8.0"; sha256="0x8is94i2svw9hlrhypkc0b9fa5jdpnr8vbk0iywdg8fp3a2yis0"; depends=[affy AnnotationDbi Biobase cluster ConsensusClusterPlus frma frmaTools gplots hgu133plus2_db hgu133plus2frmavecs pamr rgl ROCR siggenes survival sva]; }; + DmelSGI = derive2 { name="DmelSGI"; version="1.4.2"; sha256="11v1f4nh2r1p29dszwgq451l5cfhppylggg578xfn0i20dmwfrry"; depends=[abind gplots igraph knitr limma rhdf5 TSP]; }; + DonaPLLP2013 = derive2 { name="DonaPLLP2013"; version="1.10.0"; sha256="0j22cb94h0sz17jdvfcc6ifig738qkx8rhlhyps42vjinslzh317"; depends=[EBImage]; }; + DrugVsDiseasedata = derive2 { name="DrugVsDiseasedata"; version="1.8.0"; sha256="0qzm3zlsxhh3bq98wbwar1lmrdkjigxbw249l4l6fs6rkr89fjh7"; depends=[]; }; + DvDdata = derive2 { name="DvDdata"; version="1.8.0"; sha256="0mfgcwjqmpbi0bqy0xav8bd6w5pasx10xmz3sk5qx17iw873n6j7"; depends=[]; }; + EGSEAdata = derive2 { name="EGSEAdata"; version="1.0.1"; sha256="12294jrirm23sch7b84ylvsxg7njw9gj5h9spjh0s3mzp0iak3ac"; depends=[]; }; + ELMER_data = derive2 { name="ELMER.data"; version="1.2.2"; sha256="1invnncdcqxv8iz0asj9nkgxrvjannqfhgmv23w2p7hpvnhfc18h"; depends=[GenomicRanges]; }; + EatonEtAlChIPseq = derive2 { name="EatonEtAlChIPseq"; version="0.10.0"; sha256="1i9cm0way8g856h90rcgq6xh0w3qkv4cq8ac0k7b2gpnsa342m6w"; depends=[GenomicRanges rtracklayer ShortRead]; }; + FANTOM3and4CAGE = derive2 { name="FANTOM3and4CAGE"; version="1.8.0"; sha256="1yvk3px2dcnld9maizb9l5xd82pr7y9j652gknn20kl6d70rqz90"; depends=[]; }; + FIs = derive2 { name="FIs"; version="1.0.0"; sha256="0fd7yfzdyr7lrixaxji14012z2kqlyx5g9236r9hi5v1fcrxgi1v"; depends=[]; }; + Fletcher2013a = derive2 { name="Fletcher2013a"; version="1.8.0"; sha256="0yk4aqi5j94m1n2d0ablmcc5czk44nyimi5wfagyb51187hvad8s"; depends=[Biobase gplots limma VennDiagram]; }; + Fletcher2013b = derive2 { name="Fletcher2013b"; version="1.8.0"; sha256="11lfcbbmz5yk12j5yvn4y8ylf62i98h6y3b0mkd63lyswfkzknq9"; depends=[Fletcher2013a igraph RColorBrewer RedeR RTN]; }; + FlowSorted_Blood_450k = derive2 { name="FlowSorted.Blood.450k"; version="1.10.0"; sha256="1i3f459rd7fnkqqpdshzxkilcm3m2mivw8hva3y7gb6734gpllyy"; depends=[minfi]; }; + FlowSorted_CordBlood_450k = derive2 { name="FlowSorted.CordBlood.450k"; version="1.0.0"; sha256="0rq9b4xdvq6v1brjvn7qhin3s8jaakc4s5va87qnnr6hh41zlj2a"; depends=[minfi]; }; + FlowSorted_DLPFC_450k = derive2 { name="FlowSorted.DLPFC.450k"; version="1.8.0"; sha256="13qr6a95vwbx3ilkbh2pbim6yb9hmz0f3gn2bkj3a3hgm1skbh5c"; depends=[minfi]; }; + FunciSNP_data = derive2 { name="FunciSNP.data"; version="1.8.0"; sha256="07pdy0fpprs8ri1vrg3z97zdrifrgh9js25g2imb7f84fnzcl1gj"; depends=[IRanges rtracklayer]; }; + GGdata = derive2 { name="GGdata"; version="1.10.0"; sha256="14y0vmzhf3afz1q3ydrl2pwdn42x2j58rmyj2rbidcj1l2dqg4gd"; depends=[AnnotationDbi Biobase GGBase illuminaHumanv1_db snpStats]; }; + GSBenchMark = derive2 { name="GSBenchMark"; version="0.106.0"; sha256="028f0xfnmq5rn8z1q12rmd4wmcg4r7vncxkjbb589d5v7d7p73b0"; depends=[]; }; + GSE62944 = derive2 { name="GSE62944"; version="1.0.0"; sha256="1j9gh4glqw3ip442m4rp2i174l9ql9kbxd0slm7d9qgfkpggzyki"; depends=[Biobase GEOquery]; }; + GSVAdata = derive2 { name="GSVAdata"; version="1.8.0"; sha256="17azis177nwq34pn55mvz4clq32w2qn9m9rfbd2j99y7m0gcc63h"; depends=[Biobase GSEABase hgu95a_db]; }; + GWASdata = derive2 { name="GWASdata"; version="1.10.0"; sha256="0xl7idhril2jfas34g7nr7b6qvnglkg6q7q9xh1damk166dpb49g"; depends=[GWASTools]; }; + GeuvadisTranscriptExpr = derive2 { name="GeuvadisTranscriptExpr"; version="1.0.2"; sha256="1rxkg8wxpkv0rlldyfa01f8fvph35gy7awpsnw58qfj92bcsmkgg"; depends=[]; }; + HD2013SGI = derive2 { name="HD2013SGI"; version="1.12.0"; sha256="0701nvh83q3r1mkzl6ywb91zhnmwshmsnl22zb2dhikbn1j4rzbc"; depends=[EBImage geneplotter gplots limma LSD RColorBrewer splots vcd]; }; + HEEBOdata = derive2 { name="HEEBOdata"; version="1.10.0"; sha256="1rpvpgirbwmyc3ybh2z7h6z6a0bw4jfcm60c1kamnvj44nk9f32j"; depends=[]; }; + HIVcDNAvantWout03 = derive2 { name="HIVcDNAvantWout03"; version="1.12.0"; sha256="073sb84gy804ipsdcrljxvizxp637zi9lxzc8zimxk91l35mcrnc"; depends=[]; }; + HSMMSingleCell = derive2 { name="HSMMSingleCell"; version="0.106.2"; sha256="1lc0q6q2601z53fyxzfjzl4yg14pl0rz8j8jqzjjvb3c29an7wbb"; depends=[]; }; + HarmanData = derive2 { name="HarmanData"; version="1.0.2"; sha256="1yd9np9diir65cndk2n8cdfilnxycl0fhd9kzdz8fh37inrfvli2"; depends=[]; }; + HiCDataHumanIMR90 = derive2 { name="HiCDataHumanIMR90"; version="0.106.0"; sha256="1bh9ncz49gp25nj5cy4yr577lnzh6byrcps5aic71052xqw00a3a"; depends=[]; }; + HiCDataLymphoblast = derive2 { name="HiCDataLymphoblast"; version="1.8.0"; sha256="0mmvxi6ippljm2c1h7grhlr0qacyvq63w0mnm9n2g6bjkmwzmn0w"; depends=[]; }; + Hiiragi2013 = derive2 { name="Hiiragi2013"; version="1.8.0"; sha256="0s0ynp1mc60ikhn20phw37happbdxi1gfgkikj51z0aryrf489wd"; depends=[affy Biobase boot clue cluster genefilter geneplotter gplots gtools KEGGREST lattice latticeExtra MASS mouse4302_db RColorBrewer xtable]; }; + IHW = derive2 { name="IHW"; version="0.99.14"; sha256="1qh81nhvqg5pfxvd6ap7rlksbqk6wb041w1ba1s36gfrjr1ff1j0"; depends=[BiocGenerics fdrtool lpsymphony slam]; }; + IHWpaper = derive2 { name="IHWpaper"; version="1.0.2"; sha256="0whaa0gdqx5c5l8ra6yjl9dx9nkg32fs16w095djk7jn9f140211"; depends=[Biobase BiocGenerics BiocParallel cowplot DESeq2 dplyr fdrtool genefilter ggplot2 IHW qvalue Rcpp SummarizedExperiment]; }; + ITALICSData = derive2 { name="ITALICSData"; version="2.10.0"; sha256="1l31w7fgaizdglp8khnlzzpz1gwxmhzmpgfbkpnvl7wsdkfa20pn"; depends=[]; }; + Illumina450ProbeVariants_db = derive2 { name="Illumina450ProbeVariants.db"; version="1.8.0"; sha256="1x8c897bj5bq9ifw4pyvq36rk6sqyqinr66hhxm0gcj0grhi8kpv"; depends=[]; }; + IlluminaDataTestFiles = derive2 { name="IlluminaDataTestFiles"; version="1.10.0"; sha256="191a6vyd35ia7dcx7x9vcgizapnpzdyhcqygw4yhsf0z3pr5iv9b"; depends=[]; }; + Iyer517 = derive2 { name="Iyer517"; version="1.14.0"; sha256="13p736wxx77qc4dg2bxl2crf193yj5jxx9p6m5mblqbrgvnr4g5g"; depends=[Biobase]; }; + JASPAR2014 = derive2 { name="JASPAR2014"; version="1.8.0"; sha256="1wspjfij2h0x5i2lff0j24rx9v3ivp6s9plv61zrj34sbwibwwws"; depends=[Biostrings]; }; + JASPAR2016 = derive2 { name="JASPAR2016"; version="1.0.0"; sha256="0i29a9qa68zxgvgmfx0wyhnbangvbqr2mbdgqh65a56mnjk2ay2q"; depends=[]; }; + JctSeqData = derive2 { name="JctSeqData"; version="1.2.2"; sha256="17ld0vwk9dqyy6a6n386mzklx05azcwcfwbxrbm07z0d7f2fc73n"; depends=[]; }; + KEGGandMetacoreDzPathwaysGEO = derive2 { name="KEGGandMetacoreDzPathwaysGEO"; version="0.106.0"; sha256="07pffi3ajklina1w35dn1dgj522djymp07dyillxyhm21g64qcn5"; depends=[Biobase BiocGenerics]; }; + KEGGdzPathwaysGEO = derive2 { name="KEGGdzPathwaysGEO"; version="1.10.0"; sha256="0c7gdlxnwxlcfvydq93p9zklggk3cgrspshhjzzsmavm1dk917kk"; depends=[Biobase BiocGenerics]; }; + LiebermanAidenHiC2009 = derive2 { name="LiebermanAidenHiC2009"; version="0.10.0"; sha256="1fqhs3kmxf3hjld6hmi1grn8j0a4z3s4wxy8nhmwc36c7asmcyhk"; depends=[IRanges KernSmooth]; }; + ListerEtAlBSseq = derive2 { name="ListerEtAlBSseq"; version="1.4.2"; sha256="0kcwicjx327lpnxq1lcmxy061r6cxfz8q2csrxp74dddkyvljmr2"; depends=[methylPipe]; }; + LungCancerACvsSCCGEO = derive2 { name="LungCancerACvsSCCGEO"; version="1.8.0"; sha256="0fwkqyh0zhihpp2wn98b0fk23cmh9q2xvxidskia618p69vkyvn3"; depends=[]; }; + LungCancerLines = derive2 { name="LungCancerLines"; version="0.10.0"; sha256="0svawwn2xzgsd8a9k5ml5g8yll70nwpryfsqd98azrmy5jmnpmb4"; depends=[Rsamtools]; }; + MAQCsubset = derive2 { name="MAQCsubset"; version="1.10.0"; sha256="1spiav4m5zfzkbbig0qf6clvzi6gin690gicl6pvfvnwxw9hvc3s"; depends=[affy Biobase lumi]; }; + MAQCsubsetAFX = derive2 { name="MAQCsubsetAFX"; version="1.10.0"; sha256="07c6by6j3cc2pvj59vsaphnaccks6asgdy7rap05b18v3cv0d85x"; depends=[affy Biobase]; }; + MAQCsubsetILM = derive2 { name="MAQCsubsetILM"; version="1.10.0"; sha256="0z7n1pjrx2wglxpwv8h03knff5ddhcka9jxi7y14jpmjh7k9qsdc"; depends=[Biobase lumi]; }; + MEALData = derive2 { name="MEALData"; version="1.2.0"; sha256="075b5pm1xz7xm35lcbqghlhrb1srfkbdkm3f5h24cbq3qjdlnyyf"; depends=[]; }; + MEDIPSData = derive2 { name="MEDIPSData"; version="1.8.0"; sha256="0yvrr3h57vfxiv2g1n6hiib15i6rl5zw73lic9aaihhz8vzq3hiq"; depends=[]; }; + MEEBOdata = derive2 { name="MEEBOdata"; version="1.10.0"; sha256="1r7cr1fn2x372d2vx9rxz5dd53zc6256ii2laq53i9g558c4368q"; depends=[]; }; + MMDiffBamSubset = derive2 { name="MMDiffBamSubset"; version="1.8.0"; sha256="04065hwj0ncczk4gv7zq9szp79xd90mp15a60rw8vayrh07cg563"; depends=[]; }; + MSBdata = derive2 { name="MSBdata"; version="0.10.2"; sha256="1g4ai2vrbl3dvk53acwsdqy47lh2i6d9fmghclfb8jxnh20ab34j"; depends=[]; }; + MUGAExampleData = derive2 { name="MUGAExampleData"; version="0.106.0"; sha256="1hsky35vancvwlsqky0d5liz5kfq6fhyqkvw243gjz4rakw090mh"; depends=[]; }; + MethylAidData = derive2 { name="MethylAidData"; version="1.4.2"; sha256="1x42fhaaazcwzbx7s47ffzcpga0dg39wyy64956fm42ygbvykzm6"; depends=[MethylAid]; }; + Mulder2012 = derive2 { name="Mulder2012"; version="0.12.0"; sha256="141ibn42qnv0dzzhbqgarzcvcbsqz4ckf0k4fpcgms23ky1js5s1"; depends=[HTSanalyzeR igraph KEGG_db MASS org_Hs_eg_db PANR pvclust RedeR]; }; + NCIgraphData = derive2 { name="NCIgraphData"; version="1.8.0"; sha256="0v4v0z09rh31si29sm8bwjmc3lcjpqnpsx07wyir6kqv5kils7mb"; depends=[]; }; + NGScopyData = derive2 { name="NGScopyData"; version="0.106.0"; sha256="0a9kx8d0aqv526kk26060afl5mydj8xdkh3vv1r1v820niqgyd32"; depends=[]; }; + Neve2006 = derive2 { name="Neve2006"; version="0.10.0"; sha256="1z3hg18my8sv8q9x0k4kpcq75fm73id1ak30zq1rqrscdvysk2wn"; depends=[annotate Biobase hgu133a_db]; }; + PCHiCdata = derive2 { name="PCHiCdata"; version="1.0.2"; sha256="15pdm6y6gaia5yv4xg1yjmyqwhak49fzl5v9y0mb2gsn6nb2ajs0"; depends=[Chicago]; }; + PGPC = derive2 { name="PGPC"; version="1.0.2"; sha256="0q6s3km9d8sjzhbz1yxyadcnfq3gc8aav9hgp886ri7jcm5ddh14"; depends=[ChemmineR EBImage geneplotter ggplot2 gplots imageHTS limma plyr RColorBrewer reshape2 SearchTrees splots]; }; + PREDAsampledata = derive2 { name="PREDAsampledata"; version="0.12.0"; sha256="0q4857a0i0a77ff139j57m6i5p71hg9gz24ln97hc4zrxcp3qbh6"; depends=[affy annotate Biobase gahgu133plus2_db gahgu133plus2cdf PREDA]; }; + PWMEnrich_Dmelanogaster_background = derive2 { name="PWMEnrich.Dmelanogaster.background"; version="4.6.0"; sha256="0has8xd86qh5042c5kx63py8b2bqsxy1xmn12gr7wv0r1wlkzylh"; depends=[PWMEnrich]; }; + PWMEnrich_Hsapiens_background = derive2 { name="PWMEnrich.Hsapiens.background"; version="4.6.0"; sha256="1l0806ihhba3rl6ck1xrb2jqx77jsl4c2ksph5a0dc8zccsdln94"; depends=[PWMEnrich]; }; + PWMEnrich_Mmusculus_background = derive2 { name="PWMEnrich.Mmusculus.background"; version="4.6.0"; sha256="1j55797xdw1bwy0z0md4swyn87lki5y1qcnp7mcxfdvvq4371vm4"; depends=[PWMEnrich]; }; + PasillaTranscriptExpr = derive2 { name="PasillaTranscriptExpr"; version="1.0.2"; sha256="0h867v5vrcwaibybqf8przk4d2l286bwbc0rg1863kdq63qhxpls"; depends=[]; }; + PathNetData = derive2 { name="PathNetData"; version="1.8.0"; sha256="0wxixfjdskcqpy6nr2bfjggjd40jlzq31y50k5x0ccbhkkf60lrv"; depends=[]; }; + ProData = derive2 { name="ProData"; version="1.10.0"; sha256="1fkh3arikrwzllqn83x5v71b5x0nm31fy1xr2sldln1qif583mcn"; depends=[Biobase]; }; + QDNAseq_hg19 = derive2 { name="QDNAseq.hg19"; version="1.2.0"; sha256="13d8zwgwv22nhi96yypk87m35yhf256aslxhx682awi40lacljr1"; depends=[QDNAseq]; }; + QDNAseq_mm10 = derive2 { name="QDNAseq.mm10"; version="1.2.0"; sha256="0v5j0nfy0k0jkgd2mxc7ya0bfagcrl7ck72crz3959bh70vglvdg"; depends=[QDNAseq]; }; + QUBICdata = derive2 { name="QUBICdata"; version="1.0.2"; sha256="1q99mhlk08x9y68pyjv9wjrdvg58qzvfsxg1alrilyh243zr2nsn"; depends=[]; }; + RIPSeekerData = derive2 { name="RIPSeekerData"; version="1.8.0"; sha256="1i5mwj837ppmildrbsq38iqbmhgphbz18vin7qj03axxg29lkwxm"; depends=[RIPSeeker]; }; + RMassBankData = derive2 { name="RMassBankData"; version="1.10.0"; sha256="113x5dq02krdv3i1vlziqiwvvpnwg7mmmarsysjnjad539gklfvy"; depends=[]; }; + RNAinteractMAPK = derive2 { name="RNAinteractMAPK"; version="1.10.0"; sha256="0b3gfhm5b4s044j78lq81jj3pq7w7ycxh466xnlxilaqyw7g0ydl"; depends=[fields gdata genefilter MASS RNAinteract sparseLDA]; }; + RNAseqData_HNRNPC_bam_chr14 = derive2 { name="RNAseqData.HNRNPC.bam.chr14"; version="0.10.0"; sha256="016wrjr539an4hygb53schaypbsivnk6asrwywhjlxb0cjwszwvy"; depends=[]; }; + RRBSdata = derive2 { name="RRBSdata"; version="0.106.0"; sha256="08knas04hnhm54ya6nqhzv86q12gfjfynjqpy3d63s13r25pn4xk"; depends=[BiSeq]; }; + RTCGA_CNV = derive2 { name="RTCGA.CNV"; version="1.0.2"; sha256="0yq6yig0xx0lzcqz1adb78swmy1jwb18hqp1x1xvnqf7c9jffv2a"; depends=[RTCGA]; }; + RTCGA_PANCAN12 = derive2 { name="RTCGA.PANCAN12"; version="1.0.2"; sha256="0mkwa1w6qzp1kzjg8y0vs09vq5yy0alf5v56cg64qg83yjb2153l"; depends=[RTCGA]; }; + RTCGA_RPPA = derive2 { name="RTCGA.RPPA"; version="1.0.2"; sha256="0h95prind9ydyc2yj9m5ay6m7jx8fi3ay42j37px3gb0l4zmb1ph"; depends=[RTCGA]; }; + RTCGA_clinical = derive2 { name="RTCGA.clinical"; version="20151101.2.2"; sha256="0dyr95s50cgw5xczczlaiba1hbc6x4gn03bq3zffcss3kwwzrhqy"; depends=[RTCGA]; }; + RTCGA_mRNA = derive2 { name="RTCGA.mRNA"; version="1.0.2"; sha256="031g8pllcyyn7ayd2qy3yyq3ny39snnk86r6dy44n53a7wixvaap"; depends=[RTCGA]; }; + RTCGA_methylation = derive2 { name="RTCGA.methylation"; version="1.0.2"; sha256="1nzyl6ny4vvgpxy891icy6smwi24li67k4nwzm7vwkbxq25lkgvy"; depends=[RTCGA]; }; + RTCGA_miRNASeq = derive2 { name="RTCGA.miRNASeq"; version="1.0.2"; sha256="16yqlr2ml4hg6kz5740nxl10jkgs4d3mvm4gj2lb8qg3mji0xw77"; depends=[RTCGA]; }; + RTCGA_mutations = derive2 { name="RTCGA.mutations"; version="20151101.2.2"; sha256="0mdj5aqxrhpwcxp2i6m9xxp808v73b3gr59ymnfsvh8pyf6929p8"; depends=[RTCGA]; }; + RTCGA_rnaseq = derive2 { name="RTCGA.rnaseq"; version="20151101.2.2"; sha256="1wsvyrs738qz55x41byhsqrnxp3w18qibxwmmsymkgx065rlnn7p"; depends=[RTCGA]; }; + RUVnormalizeData = derive2 { name="RUVnormalizeData"; version="0.106.0"; sha256="065vc1dhka15zzlpl84j4y619wifn7gh31i3yjqds0bgkzj5ppz8"; depends=[Biobase]; }; + RforProteomics = derive2 { name="RforProteomics"; version="1.10.2"; sha256="07snpj844hbr1g9ciq06s75w6pcjr4j70ssg85wr3igas1zmkz85"; depends=[Biobase BiocInstaller biocViews interactiveDisplay MSnbase R_utils rpx shiny]; }; + RnBeads_hg19 = derive2 { name="RnBeads.hg19"; version="1.4.0"; sha256="0k3k116ncw3l8fjkilbgydpp3wwj9341f7zmm67wv3mr06s43hdl"; depends=[GenomicRanges]; }; + RnBeads_hg38 = derive2 { name="RnBeads.hg38"; version="1.4.0"; sha256="0jmyxbdw7jj16d9p2p5kf5bc1jgdcq4w7nfca2bdsmn7q3lyq0yp"; depends=[GenomicRanges]; }; + RnBeads_mm10 = derive2 { name="RnBeads.mm10"; version="1.4.0"; sha256="00rj7kab8n32hxbw5682xxzrwrc91hdq1068z9bcvb52z0bsiyb2"; depends=[GenomicRanges]; }; + RnBeads_mm9 = derive2 { name="RnBeads.mm9"; version="1.4.0"; sha256="1513z6xka9gx3gmykc40p0xh33i4jbpw8j4l6h0bs6h25fsarqhc"; depends=[GenomicRanges]; }; + RnBeads_rn5 = derive2 { name="RnBeads.rn5"; version="1.4.0"; sha256="1f16sb6mazcs184wrpwkgbz6zkbk6k79pawn7ip1rsjma9p1sgqp"; depends=[GenomicRanges]; }; + RnaSeqSampleSizeData = derive2 { name="RnaSeqSampleSizeData"; version="1.4.2"; sha256="127hc0wkpjssmnwqj4zzlbv7glznsc5g3qfsmx4slzf983i3hdbi"; depends=[edgeR]; }; + RnaSeqTutorial = derive2 { name="RnaSeqTutorial"; version="0.10.0"; sha256="0ci771xdjyjxidkra0lcbpnnqghbk9ycvllpxla3lw5h608wgb4m"; depends=[easyRNASeq]; }; + SCLCBam = derive2 { name="SCLCBam"; version="1.4.0"; sha256="0jpx7m38gl38r54b0652rxvbma61gzmki28j373g3ns4f4xxf7ph"; depends=[]; }; + SNAData = derive2 { name="SNAData"; version="1.18.0"; sha256="11bvbzxcvg5s3f9cl44cpwnb2php8qkfmlvzpw829wb6k2pk5ha9"; depends=[graph]; }; + SNAGEEdata = derive2 { name="SNAGEEdata"; version="1.8.0"; sha256="0qy6rwsggd4cyvci9ng1l8kjpcv79hhqndvv6zpwnvh7ng9f0x5d"; depends=[]; }; + SNPhoodData = derive2 { name="SNPhoodData"; version="1.2.2"; sha256="0r4kanaq96xppyhjy2hnss42ckn8mac9gwpyak64ywwvq30wl12m"; depends=[]; }; + SVM2CRMdata = derive2 { name="SVM2CRMdata"; version="1.4.0"; sha256="0lwdr0zpq3m0fqwijfgnm4jky8wg5pakrlpfgdhff01i9x4dh8bb"; depends=[]; }; + Single_mTEC_Transcriptomes = derive2 { name="Single.mTEC.Transcriptomes"; version="1.0.2"; sha256="0vpa4a43h39hl8jx465kbypird4bh2ry5dyz3pyrf483j2wlmwjd"; depends=[]; }; + SomatiCAData = derive2 { name="SomatiCAData"; version="1.10.0"; sha256="1f2m9rdfczlsn4nvyj5m5qhy1zg08y5ajblqc4r2r6gh8y8vpqyi"; depends=[]; }; + SomaticCancerAlterations = derive2 { name="SomaticCancerAlterations"; version="1.8.2"; sha256="0kdngwd3b9vb698rpfmbirbi6wa70p3sp41z2q92fjlvv9lmv7b4"; depends=[exomeCopy GenomicRanges IRanges S4Vectors stringr]; }; + SpikeIn = derive2 { name="SpikeIn"; version="1.14.0"; sha256="1wrfz7sl1gdqpps54k8dy2r5444jajbkg66br6pjf78s4qh555sg"; depends=[affy]; }; + SpikeInSubset = derive2 { name="SpikeInSubset"; version="1.12.0"; sha256="0r9cknnazvp8rl7a0aynh5lpb1lq69d3s8jz84wafj2mdddr3m46"; depends=[affy Biobase]; }; + TBX20BamSubset = derive2 { name="TBX20BamSubset"; version="1.8.0"; sha256="1950l0fwf23p62v0sgh0mjyisa9cnf0wjplx4x368l30jxgx8ag8"; depends=[Rsamtools xtable]; }; + TCGAMethylation450k = derive2 { name="TCGAMethylation450k"; version="1.8.0"; sha256="18hzf0sz089dpay1c4abp1wwi680gbp1cnz32rm40fgadaxv60ga"; depends=[]; }; + TCGAcrcmRNA = derive2 { name="TCGAcrcmRNA"; version="0.106.0"; sha256="0j87h53l2by6rx0r452s3vyf1987p23zgdybgyblwhdjgiddizc0"; depends=[Biobase]; }; + TCGAcrcmiRNA = derive2 { name="TCGAcrcmiRNA"; version="0.106.0"; sha256="1207h52ccs7rv4dpp87xmsdgyl841zxrnzg4wh55v8kcqnk08ly9"; depends=[Biobase]; }; + TargetScoreData = derive2 { name="TargetScoreData"; version="1.8.0"; sha256="1mb3b14qa4b0cbzxlkn4c5rihp1niz98qdd3kmmj9w3q0fllymxa"; depends=[]; }; + TargetSearchData = derive2 { name="TargetSearchData"; version="1.10.0"; sha256="1vyphhfz6lnyh19qid7m5d1j8lmwzda89bq58r5anz2dk2m7rg2s"; depends=[TargetSearch]; }; + TimerQuant = derive2 { name="TimerQuant"; version="1.2.2"; sha256="08i0qnp7fhpg1y5xdckrwxh2mzyxrv2s44z5vs1ldr2wlx4y244p"; depends=[deSolve dplyr ggplot2 gridExtra locfit shiny]; }; + WES_1KG_WUGSC = derive2 { name="WES.1KG.WUGSC"; version="1.4.0"; sha256="07kh15dyqhb867y93g3ymcr346l69p30sikfm30dvhq16ckrg9jm"; depends=[]; }; + XhybCasneuf = derive2 { name="XhybCasneuf"; version="1.10.0"; sha256="08zhxkg5h1g13l3p17idzcyz34qbpr6yvvl8qzkfgnm0ipcd35dv"; depends=[affy ath1121501cdf RColorBrewer tinesath1cdf]; }; + affycompData = derive2 { name="affycompData"; version="1.10.0"; sha256="12dmv99m7iy0wrzsk9h2j8ibby0shfxlyk02kk9312rlnyf7qb6g"; depends=[affycomp Biobase]; }; + affydata = derive2 { name="affydata"; version="1.20.0"; sha256="1wg3kxvlzqwf40wrkz69szrcyv4fr0fml42qqfcw7qy1m3skp1hi"; depends=[affy]; }; + airway = derive2 { name="airway"; version="0.106.2"; sha256="1yidngcxv2sma29l5k9zpjhfbawk2wb62w7ik0gbjxw9sdacpk0v"; depends=[SummarizedExperiment]; }; + antiProfilesData = derive2 { name="antiProfilesData"; version="1.8.0"; sha256="07kccp1qhhmskpymvllz9l5a4r1ml8wzww0ik82653pibsjr5zy7"; depends=[Biobase]; }; + bcellViper = derive2 { name="bcellViper"; version="1.8.0"; sha256="05bvnx7ji27r115ih4k00pqb2zvfg9cj6hsr03yszp7cmhdjw752"; depends=[Biobase]; }; + beadarrayExampleData = derive2 { name="beadarrayExampleData"; version="1.10.0"; sha256="1gvq1f95yy9x8nx5hj20c884xcl6zqhsmc39pdzhmdgclfr07p6i"; depends=[beadarray Biobase]; }; + beta7 = derive2 { name="beta7"; version="1.10.0"; sha256="1vry0dbwjvzynb9bgxr8vnpaqby6kb8am2fc230hswqmwm6yjgkq"; depends=[marray]; }; + bladderbatch = derive2 { name="bladderbatch"; version="1.10.0"; sha256="06f8gx1gmkn520ca17z5a03j9f5f4bz00ggy51ygl9zlb7ib56si"; depends=[Biobase]; }; + blimaTestingData = derive2 { name="blimaTestingData"; version="0.106.0"; sha256="1d9x37wdnhcx6q5qipf4y74pr8585wwlz7xdq7dmfcrghsgd23qi"; depends=[]; }; + breastCancerMAINZ = derive2 { name="breastCancerMAINZ"; version="1.10.0"; sha256="1ry4issbkfk761sc1mjhg46hk7j5yb4kidvpgh9nnid807zyqrfp"; depends=[]; }; + breastCancerNKI = derive2 { name="breastCancerNKI"; version="1.10.0"; sha256="1wml4q5m83ak1zagpjlbwy7fzap7dli0rnpjanyk3dqrl79pp77c"; depends=[]; }; + breastCancerTRANSBIG = derive2 { name="breastCancerTRANSBIG"; version="1.10.0"; sha256="0iyb8dvz4l7rvaam2xnyvgmg4n5zak5w6jhzqyc1dy29hhy55rjv"; depends=[]; }; + breastCancerUNT = derive2 { name="breastCancerUNT"; version="1.10.0"; sha256="04av31c737ggq268rc84z89hhfv3pqrxkjlbbwhrl2qmcc0hh9fl"; depends=[]; }; + breastCancerUPP = derive2 { name="breastCancerUPP"; version="1.10.0"; sha256="1cdx855ai6qrzq49l57x9nl58jpixnpp97cmfzys8n7kb2dn963h"; depends=[]; }; + breastCancerVDX = derive2 { name="breastCancerVDX"; version="1.10.0"; sha256="0q1ann7mhgxlyikb4nprzhy2mm6g8fgfbb2kyczi7sshrh6h4qba"; depends=[]; }; + bronchialIL13 = derive2 { name="bronchialIL13"; version="1.10.0"; sha256="1r6p4ysr6ahwlwi0hhla6fb8cmnmgbssbqhrizqsid1f7di77n6b"; depends=[affy]; }; + bsseqData = derive2 { name="bsseqData"; version="0.10.0"; sha256="196bbxl1p31g9kpm448642a0gx8dyng8r98gn53pxmdpp2hq5yxl"; depends=[bsseq]; }; + cMap2data = derive2 { name="cMap2data"; version="1.8.0"; sha256="0pnym9c0pipag2kr7j6b7c3dhhhav7z508avv4aj6f4wcagb4yrp"; depends=[]; }; + cancerdata = derive2 { name="cancerdata"; version="1.10.0"; sha256="0388634p3j33vz8dw5i2j2y3n9w9h2diw3qsnqcar4w7d97grd9v"; depends=[Biobase]; }; + ccTutorial = derive2 { name="ccTutorial"; version="1.10.0"; sha256="04h212d5j963xm5l1hpdb901njfrfkp1qdy12ndlrph010kpk6mv"; depends=[affy Biobase Ringo topGO]; }; + ceu1kg = derive2 { name="ceu1kg"; version="0.10.0"; sha256="05dvfjpf93cl8g1caypzk84k73z6vmam91x3rh16r1fw4i3sj2i7"; depends=[Biobase GGBase GGtools]; }; + ceu1kgv = derive2 { name="ceu1kgv"; version="0.14.0"; sha256="0ah88kr9rc6g4n7d800dxaarpliy443zpd7innbmrm02xq4yjn6g"; depends=[Biobase GGBase]; }; + ceuhm3 = derive2 { name="ceuhm3"; version="0.10.0"; sha256="07pzhj9b4b4zpcfg8fjlzh53yr6pzwnfv7m7cks55x47l8bpv1d8"; depends=[Biobase GGBase GGtools]; }; + cgdv17 = derive2 { name="cgdv17"; version="0.10.0"; sha256="0rjx8jn1m9h5p982c336bza9liyv5wymgigbr7dar91y89a0pmpg"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors VariantAnnotation]; }; + charmData = derive2 { name="charmData"; version="1.8.0"; sha256="0b8ka779s0p0byjn8vxbygwbr2w11g5mflgzyi4qh4dvjh84sri7"; depends=[charm pd_charm_hg18_example]; }; + cheung2010 = derive2 { name="cheung2010"; version="0.10.0"; sha256="1ibwajsyggi14vscb27kr3zg8vnqrswsiphv5cdsfnapna9n5r5k"; depends=[AnnotationDbi Biobase GenomicRanges GGtools hgfocus_db]; }; + chipenrich_data = derive2 { name="chipenrich.data"; version="1.8.0"; sha256="1nq7a4kf4nybwm9k2szccn5678agfc4zy38375f44ca8b40481x9"; depends=[BiocGenerics GenomicRanges IRanges]; }; + cnvGSAdata = derive2 { name="cnvGSAdata"; version="1.8.0"; sha256="17kfdidwvj02kcf4pvkypmx7zhyl1dafxw1j32vzvb1rm50m770b"; depends=[cnvGSA]; }; + colonCA = derive2 { name="colonCA"; version="1.14.0"; sha256="1zsk2p0q18l2nfbjgyp7h88ci3rqavnx18vkvgzp1sd4zfc2q7m4"; depends=[Biobase]; }; + curatedBladderData = derive2 { name="curatedBladderData"; version="1.8.0"; sha256="0dvr1qzjknjaq4wicihdzdlk2scj43bx89p5vshvnx5238pc0ya7"; depends=[affy]; }; + curatedBreastData = derive2 { name="curatedBreastData"; version="1.4.0"; sha256="0nm87q0x7jp2xzmw4lc3q4xa77nkjyfjzx7xnj72d9q1ph79rnyd"; depends=[Biobase BiocStyle ggplot2 impute XML]; }; + curatedCRCData = derive2 { name="curatedCRCData"; version="2.4.0"; sha256="0xw2fda03sfh9x8qdqvp0r5g06jawidjvw2139kgn3lkh000mffb"; depends=[BiocGenerics nlme]; }; + curatedOvarianData = derive2 { name="curatedOvarianData"; version="1.10.0"; sha256="1wgf366krp6zv950giw1s5am9wi54zyvh5qkyn5ff85s6nshx7xf"; depends=[affy BiocGenerics]; }; + davidTiling = derive2 { name="davidTiling"; version="1.12.0"; sha256="0hw2im7in8h49w41k528lwzb1jvdj1q1pvdlsf5n3h4dm8j2yccv"; depends=[Biobase GO_db tilingArray]; }; + derfinderData = derive2 { name="derfinderData"; version="0.106.2"; sha256="0drjk0gazg071z794d6hp88rgvl1913cchrbi23gkplrfvpqdka0"; depends=[]; }; + diffloopdata = derive2 { name="diffloopdata"; version="1.0.2"; sha256="06vc1mgyq9bzx0bkadzzmh9qjfjpwi1hz7cjnzh78afkyn6xsm25"; depends=[]; }; + diggitdata = derive2 { name="diggitdata"; version="1.4.0"; sha256="0rjjh8p58wcpvyliixnrjys4s6r6kriinrk3h0vjr1f7ljb2zci5"; depends=[Biobase viper]; }; + dressCheck = derive2 { name="dressCheck"; version="0.10.0"; sha256="05vsyp4xmpi3374xlama9bi720hns0c0lfl2094pn720mwlzm784"; depends=[Biobase]; }; + dsQTL = derive2 { name="dsQTL"; version="0.10.0"; sha256="1jkg3j8gclm7c8dc2620dvy91z0j7p02nswb4v52p377g3v90pw1"; depends=[Biobase GGBase SummarizedExperiment]; }; + dyebiasexamples = derive2 { name="dyebiasexamples"; version="1.12.0"; sha256="1iqhbzx5dggch34h87g189ldppv3axjmi60vi5cmfl0ngwh7gkyv"; depends=[GEOquery marray]; }; + ecoliLeucine = derive2 { name="ecoliLeucine"; version="1.12.0"; sha256="1g0diwj1ihqw10rfgw2rp7vfnjrknkgmqm9l5snxcsszkqn11ipl"; depends=[affy ecolicdf]; }; + encoDnaseI = derive2 { name="encoDnaseI"; version="0.10.0"; sha256="1ka2m4i6f6wccfrkjzcjgygxmpkf9xfyh1cykzh9zrjc3305pyjd"; depends=[Biobase GGBase GGtools lattice]; }; + estrogen = derive2 { name="estrogen"; version="1.18.0"; sha256="0kimcb33jsanysl60dhmyhz4201f33ni8ap3wk4ikplf3s619l8j"; depends=[affy]; }; + etec16s = derive2 { name="etec16s"; version="1.0.0"; sha256="07ngasmbqiipkxy23kdpjbi72n3mjfk4wkad52sli48s3hh2xssa"; depends=[Biobase metagenomeSeq]; }; + faahKO = derive2 { name="faahKO"; version="1.12.0"; sha256="1sx6jdkv8i1d4lpl4kv2d3c0gk2cycs0gzykngyvz8yap911i82y"; depends=[xcms]; }; + fabiaData = derive2 { name="fabiaData"; version="1.10.0"; sha256="0m51rnsgh4wrq69rpc1i4cn69jvab4y0ib4sr6kpdh8mqrb17n0k"; depends=[Biobase]; }; + facopy_annot = derive2 { name="facopy.annot"; version="0.106.0"; sha256="1bfsnqlcb8lq351anaq1bc2hgzpdsavzpsh81sr7pq0kpinkn35i"; depends=[]; }; + facsDorit = derive2 { name="facsDorit"; version="1.14.0"; sha256="0am46a770gvm0qjb0ah2gbm28yjazg2dfrdagywvyiaadj68krrk"; depends=[prada]; }; + ffpeExampleData = derive2 { name="ffpeExampleData"; version="1.10.0"; sha256="14mfsjgqxrmcf8y9n47yix9qgbi437636978nd2gxggahhvx45z8"; depends=[lumi]; }; + fibroEset = derive2 { name="fibroEset"; version="1.14.0"; sha256="0h6dj4ypwvxi9137mzpzsymw0dkgral0d3fvh8via8l0vkzhxq81"; depends=[Biobase]; }; + fission = derive2 { name="fission"; version="0.106.2"; sha256="0x43py9445w5hw4z9s2br7k2lqlr988bchaw7qjll6qhm5xrbip0"; depends=[SummarizedExperiment]; }; + flowFitExampleData = derive2 { name="flowFitExampleData"; version="1.8.0"; sha256="02dlkyl9zxqy4cns9mrgf98zspzc5ks1qajbg8vy4fnrphykbp0v"; depends=[flowCore]; }; + flowWorkspaceData = derive2 { name="flowWorkspaceData"; version="2.8.0"; sha256="063wq1nv9f3z014qhcq8a060q5n1yxc99knh12vd1kl8blbanjvn"; depends=[]; }; + frmaExampleData = derive2 { name="frmaExampleData"; version="1.8.0"; sha256="1mwyx3xyz82xg9ymyqsiy2iqpcfgw471pmbfd489y15rb7jdl2rh"; depends=[]; }; + furrowSeg = derive2 { name="furrowSeg"; version="1.0.2"; sha256="0j1zvdm7g3f0m8y58izbrkmpsjxi0sx4h24qlbmglj2xhhh34b9i"; depends=[abind dplyr EBImage locfit tiff]; }; + gageData = derive2 { name="gageData"; version="2.10.0"; sha256="17nr1kfn2r5zhwd7sj01iv7wv3rw8bj3dpfm9x4bsg2pby93i2wl"; depends=[]; }; + gaschYHS = derive2 { name="gaschYHS"; version="1.10.0"; sha256="1aaxy1iayi10k7pj4s3jfx7dss929ll11zvps1xcbiz1wfhk9163"; depends=[Biobase]; }; + gatingMLData = derive2 { name="gatingMLData"; version="2.12.0"; sha256="14a2kvg95zvq4ij8adqihr7ajckgzg76y3r1c7bbyd4b46h96l1x"; depends=[]; }; + gcspikelite = derive2 { name="gcspikelite"; version="1.10.0"; sha256="139ig58xnds081q8azkkzpp1mb22xx9cz0m38lpw0xl69ny1h8mv"; depends=[]; }; + geneLenDataBase = derive2 { name="geneLenDataBase"; version="1.8.0"; sha256="10ynnx2r8snnffhwnj620z7blfy4af8rm1il6qy4g7dgs0cx7a4l"; depends=[GenomicFeatures rtracklayer]; }; + genomationData = derive2 { name="genomationData"; version="1.4.2"; sha256="1zl7gg144fs7zfycsmq5492sm1bqy7l527xbc2zj04schd9wsan2"; depends=[]; }; + geuvPack = derive2 { name="geuvPack"; version="1.4.0"; sha256="1jplp7fgcjayvxzrzxxgdwdb89k5jw4xflbjb71mrai11p8za546"; depends=[SummarizedExperiment]; }; + geuvStore = derive2 { name="geuvStore"; version="1.4.2"; sha256="0svfj6axbfyyhwx1v8dpmla9a8f31pq3psqd72zkpgqh25q7zyrn"; depends=[BatchJobs BiocGenerics GenomicRanges gQTLBase]; }; + geuvStore2 = derive2 { name="geuvStore2"; version="1.2.2"; sha256="0dhdf2a10la9vm5vcvdxrzh50va4343h57vvc8711wbris0hqfcr"; depends=[BatchJobs GenomicRanges gQTLBase]; }; + golubEsets = derive2 { name="golubEsets"; version="1.14.0"; sha256="1a1ccsx7jfcgpjmhrdpnysrsa3b7r807vkgsrkri11pidf79kbc2"; depends=[Biobase]; }; + grndata = derive2 { name="grndata"; version="1.4.2"; sha256="0ivddlxc2xd6ncwignrxkp2cy81k17wav42g8m0pjb7ck6qaak6l"; depends=[]; }; + gskb = derive2 { name="gskb"; version="1.3.0"; sha256="16yisw86zhvanigcq9zlxk3wsqdln8cwslija5s8mq68srffc3q4"; depends=[]; }; + h5vcData = derive2 { name="h5vcData"; version="1.106.0"; sha256="00m3l1wwvff3w3nxdbk7sn22i7p2ikdr1mrd5x6f7jbihzii5zdq"; depends=[]; }; + hapmap100khind = derive2 { name="hapmap100khind"; version="1.14.0"; sha256="1rpglhfy3q1m5l54wjir1nsyzqxpp1h1112gyvdxkxdv4jsxfmd2"; depends=[]; }; + hapmap100kxba = derive2 { name="hapmap100kxba"; version="1.14.0"; sha256="1lq1na4v1v2pd96nn59kppiaga9w8ib85qndbv5id0q8fh11xmsf"; depends=[]; }; + hapmap500knsp = derive2 { name="hapmap500knsp"; version="1.14.0"; sha256="1b7pyp4nqp7qkjv5zjvn8q3ha7jn8fk410y50j9vhl147jwfir98"; depends=[]; }; + hapmap500ksty = derive2 { name="hapmap500ksty"; version="1.14.0"; sha256="1cnkvc2miv4gw3gqg0avjdi19vhrpa7b24wm9fdz7ynasi164qqa"; depends=[]; }; + hapmapsnp5 = derive2 { name="hapmapsnp5"; version="1.14.0"; sha256="0yylk76s1n9n9yj04726pzs9fx10gng146s4zpbpb2qk14kj0zfr"; depends=[]; }; + hapmapsnp6 = derive2 { name="hapmapsnp6"; version="1.14.0"; sha256="0d06wzcrawssamh48ncvys1v0r1iqfg88vf8nx9hbjlyi8a8lw33"; depends=[]; }; + harbChIP = derive2 { name="harbChIP"; version="1.10.0"; sha256="0rpbv423fp7scgkdws6s467a97mv2g4ami3zx0x8p5786ywiv42y"; depends=[Biobase Biostrings IRanges]; }; + healthyFlowData = derive2 { name="healthyFlowData"; version="1.10.0"; sha256="1hmpvgapf75wiwvc4c68k1wglhg04zka51m3fyzsbqqg23g8a8zv"; depends=[flowCore]; }; + hgu133abarcodevecs = derive2 { name="hgu133abarcodevecs"; version="1.10.0"; sha256="1zckhwi7wjns9plp3r7w5v0lv3syydlf0akzgarl5fz28nbjxy42"; depends=[]; }; + hgu133plus2barcodevecs = derive2 { name="hgu133plus2barcodevecs"; version="1.10.0"; sha256="02kacr0qkvvh6bx69pmkp6n1y1q6jvizf8dqcdp72bxzav9m2pgc"; depends=[]; }; + hgu2beta7 = derive2 { name="hgu2beta7"; version="1.12.0"; sha256="056p5lmqmady3yaif7flvd266i3a6b1z8vycjfq44zxd4dccdm8m"; depends=[]; }; + hmyriB36 = derive2 { name="hmyriB36"; version="1.8.0"; sha256="1v1gbfg9sqpxlkk4qjrdh09yggqcq0xl32f845iiaxfizsj3xlh0"; depends=[Biobase GGBase]; }; + humanStemCell = derive2 { name="humanStemCell"; version="0.12.0"; sha256="1l2q09i3pl49dp2wksmj8dh81lvly09ldm8ixzz89wz5f39d2bff"; depends=[Biobase hgu133plus2_db]; }; + ind1KG = derive2 { name="ind1KG"; version="0.9.0"; sha256="02f25djy7zxh7d88v00jhpr1f5wa2ijskg5w9i90r2llwssjxx97"; depends=[chopsticks]; }; + iontreeData = derive2 { name="iontreeData"; version="1.8.0"; sha256="1xmbs8vicz7p01bk4xh8lvgdflzhybwfblpx8pdsvbkv5vz3rhkb"; depends=[]; }; + kidpack = derive2 { name="kidpack"; version="1.14.0"; sha256="0lxbi4sn4g68s23kcyaxpxdi6dpz7w3cz7i5n6x9ywa12mbnxzgs"; depends=[Biobase]; }; + leeBamViews = derive2 { name="leeBamViews"; version="1.8.0"; sha256="0bkah146rpvw1kh1r9j8rqjwh07bv5vhy3pc8gca4ssvn1l77js4"; depends=[Biobase BSgenome GenomicAlignments GenomicRanges Rsamtools]; }; + leukemiasEset = derive2 { name="leukemiasEset"; version="1.8.0"; sha256="1kvbk2j385c9jajdvgbpaq0rv8p9nid76fvjpkk2a4babbvbk5f0"; depends=[Biobase]; }; + lumiBarnes = derive2 { name="lumiBarnes"; version="1.12.0"; sha256="07vbrzyd3ihc2b3s5rs538pbq3gm1mqm2xywclx2agm4n318dbbi"; depends=[Biobase lumi]; }; + lungExpression = derive2 { name="lungExpression"; version="0.10.0"; sha256="1nhph1ljbj0z22rh9c0dcljrddgnydhhghpah9fp8qv0hbjlzl1x"; depends=[Biobase]; }; + mAPKLData = derive2 { name="mAPKLData"; version="1.4.2"; sha256="0qn6j547i2d3rndpxb0rwvk9q5i0qkc3nm4gmmpipd34hz9g7yh1"; depends=[]; }; + mammaPrintData = derive2 { name="mammaPrintData"; version="1.8.0"; sha256="1ybc3zrylvwlbzyl5nrzgsfrzfqx5yqhair3x5sansdhrsmc383d"; depends=[]; }; + maqcExpression4plex = derive2 { name="maqcExpression4plex"; version="1.16.0"; sha256="12v51x33dmj591yhnrgbpvp1v55gkkwmi1r12niprkkzdy5q3jn6"; depends=[]; }; + metaMSdata = derive2 { name="metaMSdata"; version="1.8.0"; sha256="0d79080kmna8zckadbgjgfc4hyxnqsb6pirhjyf015z3qq3w7h3l"; depends=[]; }; + miRNATarget = derive2 { name="miRNATarget"; version="1.10.0"; sha256="0hycvsh3m96aqr888vq14y38r9dj1gdn3nhmvl77rsn19bn7lryp"; depends=[Biobase]; }; + miRcompData = derive2 { name="miRcompData"; version="1.2.0"; sha256="1zl65i127p04vlbx9wy7jmrvbdh679j8sz7qxlvmcbsmbxx43dm2"; depends=[]; }; + minfiData = derive2 { name="minfiData"; version="0.14.0"; sha256="0w4gwk70ka6kic7dy7qfsb9nd791mf5gwr35x3cw7jqi6gdlh29q"; depends=[IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest minfi]; }; + minionSummaryData = derive2 { name="minionSummaryData"; version="1.2.2"; sha256="0j0jygm9nnw6zjh99l21yncddnqp93pfjsikjv80vlap8bhdndcy"; depends=[]; }; + mitoODEdata = derive2 { name="mitoODEdata"; version="1.8.0"; sha256="1ffjvsw4rj76fa39r51fvhh7xx12zsjxww9p5spg5b8alxd40f6h"; depends=[]; }; + mosaicsExample = derive2 { name="mosaicsExample"; version="1.10.0"; sha256="1r99ig2w8006zzmckcwl9b1831qya1a33z3k1vw88nwakjib5had"; depends=[]; }; + mouse4302barcodevecs = derive2 { name="mouse4302barcodevecs"; version="1.10.0"; sha256="0c8zzbqd4d70fw6xfmnmcs8wfxffy4q5jdibbv58wxyszvvs2215"; depends=[]; }; + msd16s = derive2 { name="msd16s"; version="0.106.0"; sha256="0mii809mrh4h8whas47x32xn5xbslirhf28bi641k7c4yfay4bha"; depends=[Biobase metagenomeSeq]; }; + msdata = derive2 { name="msdata"; version="0.10.0"; sha256="1m8mg19qqv5pmqchjgqk6vbljimg6iw8caz44vj6095pxzjs78cl"; depends=[]; }; + msqc1 = derive2 { name="msqc1"; version="1.0.2"; sha256="1s27aasqy93iscdqla7jdfg12i8fwwq4gb30pnv8g9amrx3ag7a7"; depends=[lattice]; }; + mtbls2 = derive2 { name="mtbls2"; version="1.2.2"; sha256="12l6f7k48ga1kq51svjgz1xw888bpqigm2ry774yv22pi01kq038"; depends=[]; }; + mvoutData = derive2 { name="mvoutData"; version="1.8.0"; sha256="1d6kj8fjh401z0bbqbyy7r509aim63srh0xihhnf8k0v4hnxb2y4"; depends=[affy Biobase lumi]; }; + pRolocdata = derive2 { name="pRolocdata"; version="1.10.0"; sha256="1v0chfpji5pjaq5pfca6d80nqq4rzfm4078i9jmcwzlbsdkpwh63"; depends=[Biobase MSnbase]; }; + parathyroidSE = derive2 { name="parathyroidSE"; version="1.10.0"; sha256="1ynmw06cj2jy61vy6pfjxx2yfmbqh5ks449zg2an02algc7cmhk6"; depends=[SummarizedExperiment]; }; + pasilla = derive2 { name="pasilla"; version="0.12.0"; sha256="128bq3gk8af8c6lyxbzisyqmal0s1vd73rzsf0w1cj46riwb81ya"; depends=[]; }; + pasillaBamSubset = derive2 { name="pasillaBamSubset"; version="0.10.0"; sha256="071zjb0w6fqwaijkkj6g56wbf7xq2d1a7am4lzmfx1s4rrqlpxk3"; depends=[]; }; + pcaGoPromoter_Hs_hg19 = derive2 { name="pcaGoPromoter.Hs.hg19"; version="1.8.1"; sha256="1q1wq5zff2qcqw5i86rrdvlf2y7n87xlcpf6grrahnh3dc8nf42z"; depends=[]; }; + pcaGoPromoter_Mm_mm9 = derive2 { name="pcaGoPromoter.Mm.mm9"; version="1.8.1"; sha256="1ln4nnb92wvg84m3haczc390c7d1xm7qbiklvv1yp5f7saqglix9"; depends=[]; }; + pcaGoPromoter_Rn_rn4 = derive2 { name="pcaGoPromoter.Rn.rn4"; version="1.8.1"; sha256="1d9sv8m4yi15zyjb3j3iva2530nzfwfb180qqm0v9zj3xqxfarnv"; depends=[]; }; + pd_atdschip_tiling = derive2 { name="pd.atdschip.tiling"; version="0.10.0"; sha256="11gj7mxx5k28ymdsf13132xy1bwablhp98wk5rx32833gx2cfafc"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pepDat = derive2 { name="pepDat"; version="0.106.2"; sha256="0gipg8j40966wvqyk77xldfqlcs891g1m47vym63s878lzz87ifm"; depends=[GenomicRanges]; }; + ppiData = derive2 { name="ppiData"; version="0.10.0"; sha256="1v6cgbdlp6dhb4vajp8ck7gpz2hbdzs8qc621xmiyslv7v03w5p8"; depends=[AnnotationDbi graph]; }; + prebsdata = derive2 { name="prebsdata"; version="1.8.0"; sha256="1cx3f99z886c7z83w35pvcw98lq2zkw27qrd4mgsi95qh1z8yz5w"; depends=[]; }; + prostateCancerCamcap = derive2 { name="prostateCancerCamcap"; version="1.0.0"; sha256="1d91m8mgq70s26lh3q9jdsa0fgv3p84wvbrvz2vd8r5z5vpph8jv"; depends=[Biobase]; }; + prostateCancerGrasso = derive2 { name="prostateCancerGrasso"; version="1.0.0"; sha256="0kiy78nyk420055m81zdiv5m9iwrw1s7bpn4mwdkjfd45klzv9vh"; depends=[Biobase]; }; + prostateCancerStockholm = derive2 { name="prostateCancerStockholm"; version="1.0.0"; sha256="13vcfyrl3958wkra6mp2w18q1d3yjcgb0ml8xasqnbicwiv3193y"; depends=[Biobase]; }; + prostateCancerTaylor = derive2 { name="prostateCancerTaylor"; version="1.0.0"; sha256="0q0n2blq1d7x20d08621gvcc2s96n0a1h0nwl7lcdb3alk0a3vmd"; depends=[Biobase]; }; + prostateCancerVarambally = derive2 { name="prostateCancerVarambally"; version="1.0.0"; sha256="0a94q06vfwmkq687gc4y3h974psq18f9rrpphldv7sscgx7dfniq"; depends=[Biobase]; }; + pumadata = derive2 { name="pumadata"; version="2.8.0"; sha256="1gkfchlr4s8rlfqi6cc3l1n7ppzihlifc7jqvk15vhz6lsrsv0sx"; depends=[affy Biobase oligo puma]; }; + rRDPData = derive2 { name="rRDPData"; version="0.106.0"; sha256="0pbn1aklw2x8yagj65436601drd81fklsgc7kwg8wrr519nb8mjq"; depends=[rRDP]; }; + rcellminerData = derive2 { name="rcellminerData"; version="1.4.2"; sha256="1bsh3i6cfyvg6drl7jz3k53g3bqcr6iz3gc5wb9kcbnvfxa6rzg5"; depends=[Biobase]; }; + rheumaticConditionWOLLBOLD = derive2 { name="rheumaticConditionWOLLBOLD"; version="1.10.0"; sha256="1c77rz7bir6rfsmry7f6bn4pzaqpwy178v8hkbkf9l6jskf29yy2"; depends=[]; }; + seq2pathway_data = derive2 { name="seq2pathway.data"; version="1.4.0"; sha256="0ysc83rcciq8isb834wfvz3iwvwa7xky28b4nvyhskblgb7d0ahp"; depends=[]; }; + seqCNA_annot = derive2 { name="seqCNA.annot"; version="1.8.0"; sha256="08d9by2grfpyl6xc137hax10nk8mjdpakg49richcr3g0yql719a"; depends=[]; }; + seqc = derive2 { name="seqc"; version="1.6.0"; sha256="1715vwd5y4pbll271ka0vszj7b4sb0z6xpv2vpkqilw71axwsj7n"; depends=[]; }; + serumStimulation = derive2 { name="serumStimulation"; version="1.8.1"; sha256="0h34yqcazpzh9scp0xpyil33fr10zx67slpn3c3m3vvi8g9aw2n1"; depends=[]; }; + seventyGeneData = derive2 { name="seventyGeneData"; version="1.8.0"; sha256="16ymh2r6g0kficrg2dnlf5hlixbzmi83vz2djxn4w7ws0bm67dfa"; depends=[]; }; + shinyMethylData = derive2 { name="shinyMethylData"; version="0.106.0"; sha256="18r8syb5glkaj6xdwqg1yqwg6lmz4w8z72394zkx58zcirpbdvnw"; depends=[]; }; + simpIntLists = derive2 { name="simpIntLists"; version="1.8.0"; sha256="0l52c7ps0yi7wmjbnl5hf5blm5wizgk0j9qfsz5dli7xp88fhjq5"; depends=[]; }; + stemHypoxia = derive2 { name="stemHypoxia"; version="1.8.0"; sha256="0llcpgp325hzjjhk05l9yhmfsksr6i4sxqvik7b80jd1978wklxm"; depends=[]; }; + stjudem = derive2 { name="stjudem"; version="1.12.0"; sha256="1fya1ma1yi5426l6m4hgisyg54y1pa7j86q5kn0dzibhijn7is4d"; depends=[]; }; + synapterdata = derive2 { name="synapterdata"; version="1.10.0"; sha256="0pnvl1bhfxa6s94csgzbnkfgbryd8yk4x8619794cdgvbxkfy11l"; depends=[synapter]; }; + systemPipeRdata = derive2 { name="systemPipeRdata"; version="1.2.4"; sha256="00difbsafgzxw2n7k5d5rf50sjahrxxdqv65a1vl7ij5vkv1fg6f"; depends=[BiocGenerics]; }; + tinesath1cdf = derive2 { name="tinesath1cdf"; version="1.10.0"; sha256="1ang51lcj9vm1jx2hxm1dmgpl9gii9gkjzcvy0kik5ljkzwp5m6b"; depends=[]; }; + tinesath1probe = derive2 { name="tinesath1probe"; version="1.10.0"; sha256="018xp85f8k1m59vf6yymba5nx1cgq2v3jg029gj2i2k63d59iwx1"; depends=[AnnotationDbi]; }; + tofsimsData = derive2 { name="tofsimsData"; version="1.0.2"; sha256="1kkl337qpipxbq99k2s84398pdfi1mmzddvwj5g3ni95ibgppipz"; depends=[]; }; + tweeDEseqCountData = derive2 { name="tweeDEseqCountData"; version="1.10.0"; sha256="0hcg3d55lklfkqbrbir3q9qsbb3r9nqk3g2qmipjfa1s16vdbmvj"; depends=[Biobase]; }; + tximportData = derive2 { name="tximportData"; version="1.0.2"; sha256="1my9afgaazmh8rif298iym9hw0ld9iy18fbz78p5qxxr016j1vqz"; depends=[]; }; + waveTilingData = derive2 { name="waveTilingData"; version="1.8.0"; sha256="0qc512xw3mpmx3dchwlpp8wsapk9jghnfgpq7f6332592r9dsr5k"; depends=[]; }; + yeastCC = derive2 { name="yeastCC"; version="1.12.0"; sha256="0j90r5mhx44x85n42a5ljyhk5xs7mpjjckrqgc5y5rlbas3922jm"; depends=[Biobase]; }; + yeastExpData = derive2 { name="yeastExpData"; version="0.18.0"; sha256="1cpn0jwxlpzyv3fjg72z87wfc6l3l39yzdkyyaqkwk55fqgzgg24"; depends=[graph]; }; + yeastGSData = derive2 { name="yeastGSData"; version="0.10.0"; sha256="1dfdi86qdpcx62hpmdrkhw4qcs9nnsyn3pf8535ky9g9x9004p2m"; depends=[]; }; + yeastNagalakshmi = derive2 { name="yeastNagalakshmi"; version="1.8.0"; sha256="15cmh17lzmbby3z028wrd90aycd64r70i9r15lffvkbp7f443q63"; depends=[]; }; + yeastRNASeq = derive2 { name="yeastRNASeq"; version="0.10.0"; sha256="1xj2bszfyzm440nf0w4gbskh1j0lbzqdhr0c88ilppmmbfmgv9nq"; depends=[]; }; + yri1kgv = derive2 { name="yri1kgv"; version="0.14.0"; sha256="1a0811vzim9cv3p37s6hbd4pqvzf4xnzi53w0kc5wrc8mz1634aa"; depends=[Biobase GGBase]; }; + yriMulti = derive2 { name="yriMulti"; version="0.0.9"; sha256="0v984z7bvqzpsj0d0zw1dqi6zavv3s5mgx7p2sbm433wfk1jjs0a"; depends=[dsQTL GenomicRanges geuvPack gQTLBase Homo_sapiens SummarizedExperiment]; }; + zebrafishRNASeq = derive2 { name="zebrafishRNASeq"; version="0.106.2"; sha256="0v3j968815jwcxpj11hml5z6a06kcgvmh8lz539c2nryixr5dj53"; depends=[]; }; } diff --git a/pkgs/development/r-modules/bioc-packages.nix b/pkgs/development/r-modules/bioc-packages.nix index 391de183df66..7d5db5a744ac 100644 --- a/pkgs/development/r-modules/bioc-packages.nix +++ b/pkgs/development/r-modules/bioc-packages.nix @@ -4,1110 +4,1217 @@ # Rscript generate-r-packages.R bioc >new && mv new bioc-packages.nix { self, derive }: -let derive2 = derive { rVersion = "3.2"; }; +let derive2 = derive { rVersion = "3.3"; }; in with self; { - ABAEnrichment = derive2 { name="ABAEnrichment"; version="1.0.0"; sha256="0mxw5s4cfh9dhlwm485n3x7wf81hww1353ilz1zy1wvjx0dacb99"; depends=[ABAData gplots Rcpp]; }; - ABSSeq = derive2 { name="ABSSeq"; version="1.6.1"; sha256="0cqscx7mxady04k3f4s24rbx961sj95i2wwysxkcc0a9my25sqfg"; depends=[limma locfit]; }; - ABarray = derive2 { name="ABarray"; version="1.38.0"; sha256="15zdfwpi3hgadydxlsksr7gh7wg577qcwp47zm8mxh28mcl9l048"; depends=[Biobase multtest]; }; - ACME = derive2 { name="ACME"; version="2.26.0"; sha256="020cfccwkpk5w8xpg3xn2pcrksda67r4yg6im2qlljqrmaijjb9k"; depends=[Biobase BiocGenerics]; }; - ADaCGH2 = derive2 { name="ADaCGH2"; version="2.10.0"; sha256="11hhmap9f8iqcxf4n4didb6isswjqdwwdc1yfm2056mcgny16r91"; depends=[aCGH bit cluster DNAcopy ff ffbase GLAD snapCGH tilingArray waveslim]; }; - AGDEX = derive2 { name="AGDEX"; version="1.18.0"; sha256="0hy5kl6j8hx10a03x44lqij0j7bkg4rx5lf5aicx0mrd1g59b6w1"; depends=[Biobase GSEABase]; }; - AIMS = derive2 { name="AIMS"; version="1.2.0"; sha256="14xpa2590rkqbmq8kfm356syas117342pn1wah67mb9r45klipb9"; depends=[Biobase e1071]; }; - ALDEx2 = derive2 { name="ALDEx2"; version="1.2.0"; sha256="0p59g70472b11ab1ggzxb7l6rg5sxmb8nk47b5z4qb1lf0a0x576"; depends=[GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; - ARRmNormalization = derive2 { name="ARRmNormalization"; version="1.10.0"; sha256="11qhbvgyimfnclmn7jyl9rsvkphh854a28d29rr6fc6gvmns7y40"; depends=[ARRmData]; }; - ASEB = derive2 { name="ASEB"; version="1.14.0"; sha256="1wr7n250gv1xmnkp5xvbvc3ccwm3ffdj63bj5ifarphb4xs16kf6"; depends=[]; }; - ASGSCA = derive2 { name="ASGSCA"; version="1.4.0"; sha256="1xp7g1vhvk4m3z88pnnchjxk03q5vadrvzrb1p5rys6svfk4z9vp"; depends=[MASS Matrix]; }; - ASSET = derive2 { name="ASSET"; version="1.8.0"; sha256="17pswg3babj454rr6hcnk8k3bgm9rcw2zn8yvvd1jx79bairz47p"; depends=[MASS msm rmeta]; }; - ASSIGN = derive2 { name="ASSIGN"; version="1.6.0"; sha256="1kmm72vlxlx8nk6xd1akm9bmkmqmmazxgixjjarwp2r8drhv8447"; depends=[gplots msm Rlab]; }; - AffyCompatible = derive2 { name="AffyCompatible"; version="1.30.0"; sha256="1qw741j4d9b7bczjz3s72a9d0dcxbh5a2raak3ggwmz72p53axfz"; depends=[Biostrings RCurl XML]; }; - AffyExpress = derive2 { name="AffyExpress"; version="1.36.0"; sha256="186gc8c3bj070zvwyy4vz44wx1r85bbmil78b6m9kvwp6q1856d7"; depends=[affy limma]; }; - AffyRNADegradation = derive2 { name="AffyRNADegradation"; version="1.16.0"; sha256="122v40vq7pzl1qlycv8rvsq3r9ialkvsa8qm5drybf5f4nlk6wm8"; depends=[affy]; }; - AffyTiling = derive2 { name="AffyTiling"; version="1.28.0"; sha256="08n1w64yk1pxb9d8dpa86y3mqxrsvyq0gsfzlsqg6fz8jz497fhr"; depends=[affxparser affy preprocessCore]; }; - AgiMicroRna = derive2 { name="AgiMicroRna"; version="2.20.0"; sha256="1pb0491rgcjfnnv4xmf73bdawiggi4872w238qlf96i9a9r0gik2"; depends=[affy affycoretools Biobase limma preprocessCore]; }; - AllelicImbalance = derive2 { name="AllelicImbalance"; version="1.8.1"; sha256="1410sr3xfjwz7szl9w17h9n03im3wd9w1q25cnlyg4ipmp2xc89h"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Gviz IRanges lattice Rsamtools S4Vectors seqinr SummarizedExperiment VariantAnnotation]; }; - AnalysisPageServer = derive2 { name="AnalysisPageServer"; version="1.4.1"; sha256="0zq0h9abswvhkpgb6f966rhgj7lh02aykq88fphxfv9zzkjfxbjp"; depends=[Biobase graph log4r rjson]; }; - AnnotationDbi = derive2 { name="AnnotationDbi"; version="1.32.3"; sha256="1v6x62hgys5827yg2xayjrd9xawbayzm6wy0q4vxh1s6yxc9bklj"; depends=[Biobase BiocGenerics DBI IRanges RSQLite S4Vectors]; }; - AnnotationForge = derive2 { name="AnnotationForge"; version="1.12.2"; sha256="0dybwq4v6f99w5v2hg519wc3y01i1hq1jd250dkj9976y8lhx0b8"; depends=[AnnotationDbi Biobase BiocGenerics DBI org_Hs_eg_db RSQLite S4Vectors]; }; - AnnotationFuncs = derive2 { name="AnnotationFuncs"; version="1.20.0"; sha256="03rznpbsgq3pdh0id35vp8984f57ws2jpb0cww1qxglf967gy028"; depends=[AnnotationDbi]; }; - AnnotationHub = derive2 { name="AnnotationHub"; version="2.2.5"; sha256="11vyppg8zgfdd6s7457991l7j6l7jd4p2ah1m89bg226pakfi552"; depends=[AnnotationDbi BiocGenerics BiocInstaller httr interactiveDisplayBase RSQLite S4Vectors]; }; - AnnotationHubData = derive2 { name="AnnotationHubData"; version="1.0.2"; sha256="1d2xisxzn0cic5p5412zks5chr16g9xj159kxpkkqk1wvif6im33"; depends=[AnnotationDbi AnnotationForge AnnotationHub Biobase BiocGenerics BiocInstaller Biostrings DBI futile_logger GenomeInfoDb GenomicFeatures GenomicRanges GEOquery httr IRanges jsonlite OrganismDbi rBiopaxParser RCurl Rsamtools RSQLite rtracklayer S4Vectors XML xml2]; }; - ArrayExpress = derive2 { name="ArrayExpress"; version="1.30.1"; sha256="09z680q1l8fp2y389n6ik8mjymqn688j333c5fgdpmdqg1z5acx4"; depends=[Biobase limma oligo XML]; }; - ArrayExpressHTS = derive2 { name="ArrayExpressHTS"; version="1.20.0"; sha256="00a5h3nwwhi9phrys2gj0ba8a24iqxk09licb0jn1qzdz9mrfxmq"; depends=[Biobase BiocGenerics biomaRt Biostrings bitops DESeq edgeR GenomicRanges Hmisc IRanges R2HTML RColorBrewer rJava Rsamtools sampling sendmailR ShortRead snow svMisc XML]; }; - ArrayTV = derive2 { name="ArrayTV"; version="1.8.0"; sha256="0ny5x2w0n3di5wzywfngsfdxaciczs24cnbvk75mv6hf4bdwfp74"; depends=[DNAcopy foreach oligoClasses]; }; - ArrayTools = derive2 { name="ArrayTools"; version="1.30.0"; sha256="168llqk8w1b54xy0ijg0m8mzcwggawkdr4s7abi2fv4q5007s1jv"; depends=[affy Biobase limma xtable]; }; - AtlasRDF = derive2 { name="AtlasRDF"; version="1.6.0"; sha256="16hgw47px7ig6hrm90y5nzy3dgdfm5my58bli20aj6dhnh2yvhxd"; depends=[hash SPARQL]; }; - BAC = derive2 { name="BAC"; version="1.30.0"; sha256="1yrw01m8fd54v352pcb7904f8wi3il83nx8ywf6m968x33y2npxn"; depends=[]; }; - BADER = derive2 { name="BADER"; version="1.8.0"; sha256="0zw02zrxl9587qkfy6ayhqx66rqk9i80g9zgcywa69npr439qrmh"; depends=[]; }; - BAGS = derive2 { name="BAGS"; version="2.10.0"; sha256="00absrj8rlwcfa4pv3fhmb0561b2rxmr8c7lqq8jc5sncw8bay51"; depends=[Biobase breastCancerVDX]; }; - BBCAnalyzer = derive2 { name="BBCAnalyzer"; version="1.0.0"; sha256="12r0pn3nn6q725qrrwzmmzg6x58kqr89s3b536ld11jp4081yb6c"; depends=[Rsamtools VariantAnnotation]; }; - BCRANK = derive2 { name="BCRANK"; version="1.32.0"; sha256="14akhngl88ywirpax984vwmzg5rp57034g2kdy0sz5x283mcmav6"; depends=[Biostrings]; }; - BEAT = derive2 { name="BEAT"; version="1.8.0"; sha256="1amk6812hy56j22mdmjxjpiak60cv59plz9j7gar3nr9g6yl3c7p"; depends=[Biostrings BSgenome GenomicRanges ShortRead]; }; - BEclear = derive2 { name="BEclear"; version="1.2.0"; sha256="1s96gdgf54ijbsy29a4ac3y1z3d8y4iyv669mjiyx2qnnylb2gm9"; depends=[Matrix snowfall]; }; - BGmix = derive2 { name="BGmix"; version="1.30.0"; sha256="1ii0cvqpz7ai779r4hx8yimsx69ln1f7qlw7jvp3k606z52kqkp2"; depends=[KernSmooth]; }; - BHC = derive2 { name="BHC"; version="1.22.0"; sha256="0m8w4b3ihnmvccy32nwvgzwn7k9i018ydw8iz19b6kz5r5c89q17"; depends=[]; }; - BRAIN = derive2 { name="BRAIN"; version="1.16.0"; sha256="09f82dppd9zb3qf5y507yrnv1xsp4cgbwiz068ib0qjfaygmvb02"; depends=[Biostrings lattice PolynomF]; }; - BSgenome = derive2 { name="BSgenome"; version="1.38.0"; sha256="130w0m6q8kkca7gyz1aqj5jjhalwvwi6rk2yvbjrnj4gpnncyrd2"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools rtracklayer S4Vectors XVector]; }; - BUS = derive2 { name="BUS"; version="1.26.0"; sha256="0sggag0n66n25h6g2hlk194p6fxjaapqf8bwnzw18bkpbldm3hwg"; depends=[infotheo minet]; }; - BaseSpaceR = derive2 { name="BaseSpaceR"; version="1.14.0"; sha256="0a1ksw3i7fkp84pxki5d1pnw8zryq9qapv4vxf7sgpi0q9gl1dci"; depends=[RCurl RJSONIO]; }; - Basic4Cseq = derive2 { name="Basic4Cseq"; version="1.6.0"; sha256="0z7l5xbc23ws7jdzgx58y8nia8a588hfi785aislw7gsnki3qyry"; depends=[Biostrings BSgenome_Ecoli_NCBI_20080805 caTools GenomicAlignments GenomicRanges RCircos]; }; - BayesPeak = derive2 { name="BayesPeak"; version="1.22.0"; sha256="1jmn8p461rmgjarf4rlhyqzrjg8xkpq56rlrk6964kqxp6jkh8bi"; depends=[IRanges]; }; - BeadDataPackR = derive2 { name="BeadDataPackR"; version="1.22.0"; sha256="04ww55171fbv9170aknl2gbc0mqlpcvwjl9146xamxskc5hxivnh"; depends=[]; }; - BiGGR = derive2 { name="BiGGR"; version="1.6.0"; sha256="1bhjw46mwqyz67p82ag8y4jxvkhpd7d3a8flrs7h28d8srp9jvf8"; depends=[hyperdraw hypergraph LIM rsbml stringr]; }; - BiRewire = derive2 { name="BiRewire"; version="2.4.2"; sha256="0xzdbh0didyk4wwr1ac9n1dj1473iqgn7s3i5spj2mrvqkj6jrgm"; depends=[igraph Matrix slam tsne]; }; - BiSeq = derive2 { name="BiSeq"; version="1.10.0"; sha256="0vl0arr6chqvyysmajga91m5as54jsnx2z5a23pa7lzgvgv5xzij"; depends=[betareg Biobase BiocGenerics Formula GenomeInfoDb GenomicRanges globaltest IRanges lokern rtracklayer S4Vectors SummarizedExperiment]; }; - BicARE = derive2 { name="BicARE"; version="1.28.0"; sha256="1bnwnrv6bb5va2l54y1c560s7fkmknaayf0vs4pm2s4mdamy0k2k"; depends=[Biobase GSEABase multtest]; }; - BioMVCClass = derive2 { name="BioMVCClass"; version="1.38.0"; sha256="00dzbfq1rxwpp09cg2cl7rm989jidjnvw4rmmkiq8hkqv5r1mssn"; depends=[Biobase graph MVCClass Rgraphviz]; }; - BioNet = derive2 { name="BioNet"; version="1.30.0"; sha256="0h6s83fd2y8x1l5vibj4y154ljlbjybm91l42h0yf6gyymqci5g6"; depends=[AnnotationDbi Biobase graph igraph RBGL]; }; - BioSeqClass = derive2 { name="BioSeqClass"; version="1.28.0"; sha256="0pv63d57hck04dpha20pzyzz7przzvi536nmgnsig5zw16lis4f2"; depends=[Biobase Biostrings class e1071 foreign ipred klaR nnet party randomForest rpart scatterplot3d tree]; }; - Biobase = derive2 { name="Biobase"; version="2.30.0"; sha256="1qasjpq3kw8h7qw8cin3bjvv1256hqr1mm24fq3v0ymxzlb66szi"; depends=[BiocGenerics]; }; - BiocCaseStudies = derive2 { name="BiocCaseStudies"; version="1.32.0"; sha256="0wn3a01l6d62prrncmy22dx4nqsgzq3lw24ybf676ghrmjaygmyc"; depends=[Biobase]; }; - BiocCheck = derive2 { name="BiocCheck"; version="1.6.1"; sha256="1vkhriswlk3p0xynbj2pjs9zkg9v168g3sbi0ripcbn9v93mcp89"; depends=[BiocInstaller biocViews codetools devtools graph httr knitr optparse]; }; - BiocGenerics = derive2 { name="BiocGenerics"; version="0.16.1"; sha256="0f16ryy5f012hvksrwlmm33bcl7lw97i2jvhbnwfwl03j4w7nhc1"; depends=[]; }; - BiocInstaller = derive2 { name="BiocInstaller"; version="1.20.1"; sha256="0lsqkx8q98rix4g7wfx78fnkzmz2mjb7m9wc9zgm69m0iyp50aad"; depends=[]; }; - BiocParallel = derive2 { name="BiocParallel"; version="1.4.3"; sha256="1f5mndx66vampcsq0n66afg6x851crl0h3nyv2nyp9bsgzj9cdzq"; depends=[futile_logger snow]; }; - BiocStyle = derive2 { name="BiocStyle"; version="1.8.0"; sha256="03lmw649fch64kcwyps6ry9qmjz7f0ydwhc4yzkl7d6lffgfvihc"; depends=[]; }; - Biostrings = derive2 { name="Biostrings"; version="2.38.4"; sha256="0cjd7i4bdwabzb02gm753aji5xaihkj5ak8nb0d32cclxbj0hp33"; depends=[BiocGenerics IRanges S4Vectors XVector]; }; - BitSeq = derive2 { name="BitSeq"; version="1.14.0"; sha256="1q58za8jd96bk2wxy7np0b7lar3v0pk6ll833k10x1b260rvpgbp"; depends=[IRanges Rsamtools S4Vectors zlibbioc]; }; - BrainStars = derive2 { name="BrainStars"; version="1.14.0"; sha256="0r6jd6h48c15sg655079lwr9v1gl79wk8773w2q9fyfmakhj15vx"; depends=[Biobase RCurl RJSONIO]; }; - BridgeDbR = derive2 { name="BridgeDbR"; version="1.4.0"; sha256="0qb1xiyq993hfzdgjaw982hhvnd9lwwdzq6anr2r9dbpzsini136"; depends=[RCurl rJava]; }; - BrowserViz = derive2 { name="BrowserViz"; version="1.2.3"; sha256="009bpkns2kbg77lpxzy3jship1yvrff72kacb8zcdyg7npn64jcz"; depends=[BiocGenerics httpuv jsonlite Rcpp]; }; - BrowserVizDemo = derive2 { name="BrowserVizDemo"; version="1.2.3"; sha256="1pj9b0nhkrc3bcs36dpm2hy9lsfp2xwnrlf99b9v6n96ijki8bg9"; depends=[BiocGenerics BrowserViz httpuv jsonlite]; }; - BubbleTree = derive2 { name="BubbleTree"; version="2.0.1"; sha256="1qkvmddd7l1xg5459gd9w86d4k4rjm40c93k6piwzv8hrzr4mjzc"; depends=[Biobase BiocGenerics BiocStyle biovizBase dplyr GenomicRanges ggplot2 gridExtra gtable gtools IRanges limma magrittr plyr RColorBrewer rgl scales WriteXLS]; }; - BufferedMatrix = derive2 { name="BufferedMatrix"; version="1.34.0"; sha256="0f345lsj5khgys2apjid513psx79fdpzg6vm5ndn9iw1rkgafv9f"; depends=[]; }; - BufferedMatrixMethods = derive2 { name="BufferedMatrixMethods"; version="1.34.0"; sha256="1i8b0s0g4yk8s99iw6bli494rbg169306b8idwl4sncjyl6mzj0c"; depends=[BufferedMatrix]; }; - CAFE = derive2 { name="CAFE"; version="1.6.0"; sha256="0mmfjb93apnn39g3jrfan4zmxz7axlc6mnv6464n44kysdxyh5a4"; depends=[affy annotate Biobase biovizBase GenomicRanges ggbio ggplot2 gridExtra IRanges]; }; - CAGEr = derive2 { name="CAGEr"; version="1.12.0"; sha256="05hv46dqvqrw4kn9975wdbvvrk8hm07qjvx8dsdb4smaq67139kx"; depends=[beanplot BSgenome data_table GenomicRanges IRanges Rsamtools rtracklayer som VGAM]; }; - CALIB = derive2 { name="CALIB"; version="1.36.0"; sha256="1b21f0zg4czhk4pbd3c3vbl0p4qpw0l4wg17lm1gw4b6d6ml7jsb"; depends=[limma]; }; - CAMERA = derive2 { name="CAMERA"; version="1.26.0"; sha256="0cjm98bzg5snpgd8kjj8nmk1j851rbdlidk2dbrjv373i31nf2gj"; depends=[Biobase graph Hmisc igraph RBGL xcms]; }; - CAnD = derive2 { name="CAnD"; version="1.2.1"; sha256="0ncpa81ac6dzkhqnr56i4nzzipsmzy44n71z6sdhpa39rgdar2a7"; depends=[ggplot2 reshape]; }; - CFAssay = derive2 { name="CFAssay"; version="1.4.0"; sha256="09bc40dck4xihksji1nmzls7qmlrgwqn2jav95x0i0461l20x2v9"; depends=[]; }; - CGEN = derive2 { name="CGEN"; version="3.6.2"; sha256="13p2f92sh6l7bqrigqaqpcbyk3czby82r2wdr3gmz6xfwsjxkfmc"; depends=[mvtnorm survival]; }; - CGHbase = derive2 { name="CGHbase"; version="1.30.0"; sha256="02q2yv7mbdjq1xby5bxydd0w6vzw9nim7ac6fb0rjpcnsxng0j82"; depends=[Biobase marray]; }; - CGHcall = derive2 { name="CGHcall"; version="2.32.0"; sha256="13f3dyska147cl2q5kn42fz3d9dm8j06cmszc4ssc0i2256cp6q0"; depends=[Biobase CGHbase DNAcopy impute snowfall]; }; - CGHnormaliter = derive2 { name="CGHnormaliter"; version="1.24.0"; sha256="08paz9ij387b8x6bg1931q553j69ajk6i3lmj2jriqjdjii8wkv1"; depends=[Biobase CGHbase CGHcall]; }; - CGHregions = derive2 { name="CGHregions"; version="1.28.0"; sha256="1lnd6vwfdb1f6da4701f38vq8x4pqdp5f3p0m2j8g32qfj64vsz5"; depends=[Biobase CGHbase]; }; - CMA = derive2 { name="CMA"; version="1.28.0"; sha256="1jpjfcjhxjw3ghwr7bgkwyx7lx07v0kn1pxkhb6hs2jc7fyc8jp8"; depends=[Biobase]; }; - CNAnorm = derive2 { name="CNAnorm"; version="1.16.0"; sha256="06i4i4qbd0k0rs8l244igr6qrnfjsk5wqsxdc9vydxmnid15i7fk"; depends=[DNAcopy]; }; - CNEr = derive2 { name="CNEr"; version="1.6.2"; sha256="1ch2pwjimgrld501lfx213mbaz8a467m7mmd78ci9p2lhwyhl8xm"; depends=[Biostrings DBI GenomeInfoDb GenomicAlignments GenomicRanges IRanges RSQLite rtracklayer S4Vectors XVector]; }; - CNORdt = derive2 { name="CNORdt"; version="1.12.0"; sha256="1ral42sa8ha43g3bsk3f9v9lz9962rhyjpzxa5ciq9zc1s0ymwfq"; depends=[abind CellNOptR]; }; - CNORfeeder = derive2 { name="CNORfeeder"; version="1.10.0"; sha256="1wgndfl1r21nrwr3gdrgz7qnnwcw5x6w55c3m5fjw6ypy8npsn1b"; depends=[CellNOptR graph]; }; - CNORfuzzy = derive2 { name="CNORfuzzy"; version="1.12.0"; sha256="0636czqfy3jyhzi8xpplzxyxi9in9qysshld6pfqbx89l0nhagvm"; depends=[CellNOptR nloptr]; }; - CNORode = derive2 { name="CNORode"; version="1.12.0"; sha256="0q65285v4szwaq87skga9xcxixg1hbm3jw4ydv1k2g84b40611qs"; depends=[CellNOptR genalg]; }; - CNPBayes = derive2 { name="CNPBayes"; version="1.0.0"; sha256="06jw9xi0q5slh1xghgj1js5bn1gsmpag0w84cxa7qf5ls1bw4xp6"; depends=[BiocGenerics combinat foreach GenomeInfoDb GenomicRanges gtools IRanges matrixStats oligoClasses RColorBrewer Rcpp S4Vectors]; }; - CNTools = derive2 { name="CNTools"; version="1.26.0"; sha256="1dc57fyi0mr8y0kx17m2cnhwzn9cyc7f4fpmn1yr34ngvaj3dw66"; depends=[genefilter]; }; - CNVPanelizer = derive2 { name="CNVPanelizer"; version="1.0.0"; sha256="0m37asnrdm7zl70j2d477lpxydnliv1d9bgb0vn0hkfrwsky5fhy"; depends=[exomeCopy foreach GenomicRanges ggplot2 IRanges NOISeq plyr Rsamtools xlsx]; }; - CNVrd2 = derive2 { name="CNVrd2"; version="1.8.1"; sha256="0xbibar60gm0jj5si1br26vkbw6kqf82796i3p5512wqvwfsbk8j"; depends=[DNAcopy ggplot2 gridExtra IRanges rjags Rsamtools VariantAnnotation]; }; - CNVtools = derive2 { name="CNVtools"; version="1.64.0"; sha256="1sm28sl7ghcfrgjd0d741zfy21r6vxkhj8cn510z95aa49icpd8j"; depends=[survival]; }; - CODEX = derive2 { name="CODEX"; version="1.2.0"; sha256="006dmjcd84gnagm2gfqdxwfnrq30sc3zfvqz67wl3vpg951hpjws"; depends=[BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb Rsamtools]; }; - COHCAP = derive2 { name="COHCAP"; version="1.8.0"; sha256="1lak57k8b8jcd21wajr1ivi1sml73fsvb6jbdz6nxgjbq7al1hgk"; depends=[COHCAPanno WriteXLS]; }; - COMPASS = derive2 { name="COMPASS"; version="1.8.1"; sha256="1gqly197m0r9c8zbj7673ns94q3x7cwjdajv5aj714j63vmnv6fz"; depends=[abind clue data_table knitr plyr RColorBrewer Rcpp scales]; }; - CORREP = derive2 { name="CORREP"; version="1.36.0"; sha256="0hjkwl2mf173mfdrziiadf5hacz6j67skizch44rxc2kfj7sbhyb"; depends=[e1071]; }; - COSNet = derive2 { name="COSNet"; version="1.4.1"; sha256="0myckn066xjdm8kikqjcv1sarr8hdls1js4ak2hc97cl8is20a1r"; depends=[]; }; - CRISPRseek = derive2 { name="CRISPRseek"; version="1.10.1"; sha256="1pyif3a67z9fw3q2960sbbrb5si0xrdf04hahzm6vsqzryyvizkl"; depends=[BiocGenerics BiocParallel Biostrings BSgenome data_table IRanges S4Vectors seqinr]; }; - CRImage = derive2 { name="CRImage"; version="1.18.0"; sha256="04nk7xx870hzvdnx5763v2rr82314zv6ydwhv8gmxpp2lg23hsdy"; depends=[aCGH DNAcopy e1071 EBImage foreach MASS sgeostat]; }; - CSAR = derive2 { name="CSAR"; version="1.22.0"; sha256="0d6adk3mq7grf8dsx822d2qf5jrdhvm551z26injic8i7v4i0s3h"; depends=[GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; - CSSP = derive2 { name="CSSP"; version="1.8.0"; sha256="05x0agbcpns8s3vmbs7ygdny249vcahzk7sqv50nz39ap2c7i309"; depends=[]; }; - CancerMutationAnalysis = derive2 { name="CancerMutationAnalysis"; version="1.13.0"; sha256="0c3yjscd1jlgfl869vnv37qdb0y5gicnja1why9ws95qqgmij6zl"; depends=[AnnotationDbi limma qvalue]; }; - Cardinal = derive2 { name="Cardinal"; version="1.2.1"; sha256="1r3plzx39d85ipihsflliiczig3329frmxzyd2bwnmd3l91jf5dh"; depends=[Biobase BiocGenerics irlba lattice ProtGenerics signal sp]; }; - Category = derive2 { name="Category"; version="2.36.0"; sha256="0z6sj43y3wqfvkjvlk7hh08h5447bm3szcmd44y8s9lbkq954rxx"; depends=[annotate AnnotationDbi Biobase BiocGenerics genefilter GO_db graph GSEABase Matrix RBGL]; }; - CausalR = derive2 { name="CausalR"; version="1.0.1"; sha256="0z1vv5j4q9ap54w2xf923gdjdix7xd16k6lqvk5s5vapcnyy7v3r"; depends=[igraph]; }; - CellNOptR = derive2 { name="CellNOptR"; version="1.16.0"; sha256="1fig3brrc0hv48kx7lqbbykc9m2dzwy93cy70hlwqcs7b6phxq11"; depends=[ggplot2 graph hash RBGL RCurl Rgraphviz XML]; }; - CexoR = derive2 { name="CexoR"; version="1.8.0"; sha256="0h0q2a9k084dycxnj5lvdqs31hqqi7iza732m7kdgsazjfk5fzxg"; depends=[genomation GenomeInfoDb GenomicRanges idr IRanges RColorBrewer Rsamtools rtracklayer S4Vectors]; }; - ChAMP = derive2 { name="ChAMP"; version="1.8.0"; sha256="079ks6ds7k2mphfw73zqldi4s6zn961qkynhnqiw6fmph9gg785z"; depends=[ChAMPdata DNAcopy GenomicRanges Illumina450ProbeVariants_db IlluminaHumanMethylation450kmanifest impute IRanges limma marray minfi plyr preprocessCore RPMM sva wateRmelon]; }; - ChIPComp = derive2 { name="ChIPComp"; version="1.0.0"; sha256="1ayg98kvh9yqj132r2fw9cdq38na64rw6rmrpqkgfj1csv4q7wiy"; depends=[BiocGenerics BSgenome_Hsapiens_UCSC_hg19 BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicRanges IRanges limma Rsamtools rtracklayer S4Vectors]; }; - ChIPQC = derive2 { name="ChIPQC"; version="1.6.1"; sha256="1mw17flai6gk3sp08776sdl3mlmdq5xla7ghjq2rqk89qn5grpci"; depends=[Biobase BiocGenerics BiocParallel chipseq DiffBind GenomicAlignments GenomicRanges ggplot2 gtools IRanges Nozzle_R1 reshape2 Rsamtools S4Vectors]; }; - ChIPXpress = derive2 { name="ChIPXpress"; version="1.12.0"; sha256="0k7z1ndjl869nqc0ajl437994qrfrfj5hi92h0z5qyv3vailfgsy"; depends=[affy biganalytics bigmemory Biobase ChIPXpressData frma GEOquery]; }; - ChIPpeakAnno = derive2 { name="ChIPpeakAnno"; version="3.4.6"; sha256="0pgy2x80y7rxbarbczrz8ijacc1pv05c8y42a47zc4yaxg14pzfj"; depends=[AnnotationDbi Biobase BiocGenerics BiocInstaller biomaRt Biostrings BSgenome DBI ensembldb GenomeInfoDb GenomicFeatures GenomicRanges GO_db graph IRanges limma matrixStats multtest RBGL regioneR S4Vectors VennDiagram]; }; - ChIPseeker = derive2 { name="ChIPseeker"; version="1.6.7"; sha256="0ffs87i1kc8ckx29rdx173fzyaiqmpw1h5rgy39dk5r6mla4xj0k"; depends=[AnnotationDbi BiocGenerics boot dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gplots gridBase gtools IRanges magrittr plotrix plyr RColorBrewer rtracklayer S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene UpSetR]; }; - ChIPseqR = derive2 { name="ChIPseqR"; version="1.24.1"; sha256="17v7wlkf4hblp499v90fxai710fn4syx1n3dbfa1kbiyr218gdbz"; depends=[BiocGenerics Biostrings fBasics GenomicRanges HilbertVis IRanges S4Vectors ShortRead timsac]; }; - ChIPsim = derive2 { name="ChIPsim"; version="1.24.0"; sha256="0nazrzjpc1y88d1yj1qpmkcjnds4w6921ag7m6gypp8hwzzypqnn"; depends=[Biostrings IRanges ShortRead XVector]; }; - ChemmineOB = derive2 { name="ChemmineOB"; version="1.8.2"; sha256="02bsf78skr7mi725h0qmjixlfjq456y23cyjjmkrk6wivkjd806d"; depends=[BH BiocGenerics Rcpp zlibbioc]; }; - ChemmineR = derive2 { name="ChemmineR"; version="2.22.3"; sha256="0s1hwvfpf90j74gwj1hbd4mm84qf5l0hz5wd3l1fd2jnavv4z8x8"; depends=[BH BiocGenerics DBI digest ggplot2 Rcpp RCurl rjson]; }; - ChromHeatMap = derive2 { name="ChromHeatMap"; version="1.24.0"; sha256="1pjw05ig4wyh455z0xwplfl12z8mbi25k5ylwmymgm41pqy5n2a6"; depends=[annotate AnnotationDbi Biobase BiocGenerics IRanges rtracklayer]; }; - ClassifyR = derive2 { name="ClassifyR"; version="1.4.15"; sha256="0zxvk875y05z52mp8v09wvrxfxs8qacpcll4cg9px5pyx361fbkj"; depends=[Biobase BiocParallel locfit ROCR]; }; - Clomial = derive2 { name="Clomial"; version="1.6.0"; sha256="0x6j3qjnwh31c11gq2fqyhapc5wrd9szk9bphcgsbf7n317gbf61"; depends=[matrixStats permute]; }; - Clonality = derive2 { name="Clonality"; version="1.18.0"; sha256="0rx3k8c55q831dhfh5dpkl3px8jj6glx6i3la80r9krx68mbp947"; depends=[DNAcopy]; }; - CoCiteStats = derive2 { name="CoCiteStats"; version="1.42.0"; sha256="08xg3583qx0v5agsq1im5f1sna32i58mhpgvvsa0ccfnbbh9klpw"; depends=[AnnotationDbi org_Hs_eg_db]; }; - CoGAPS = derive2 { name="CoGAPS"; version="2.4.0"; sha256="1dl3dmhfp2sjmqnvpgpqggnzrfg1w6yf5r34al2y4yngkg8s6cds"; depends=[BH gplots RColorBrewer Rcpp]; }; - CoRegNet = derive2 { name="CoRegNet"; version="1.6.0"; sha256="0ynizawrygpka2isldbfmnlz1zqczx2fv1kbvz1lbm9qwbpj7rn4"; depends=[arules igraph shiny]; }; - CompGO = derive2 { name="CompGO"; version="1.6.0"; sha256="0n84z3mhg6zb3yafz0803g6cggzpbw31fn933q9bg7pybij0nf1p"; depends=[GenomicFeatures ggplot2 pathview pcaMethods RDAVIDWebService reshape2 Rgraphviz rtracklayer TxDb_Mmusculus_UCSC_mm9_knownGene]; }; - ComplexHeatmap = derive2 { name="ComplexHeatmap"; version="1.6.0"; sha256="113l7ykgxqnrbr4rz3cpa39k3n6i67zkxindcacpv35pncmasi6c"; depends=[circlize colorspace dendextend GetoptLong GlobalOptions RColorBrewer]; }; - ConsensusClusterPlus = derive2 { name="ConsensusClusterPlus"; version="1.24.0"; sha256="13fy6qzqnph6xlbkshz2x8n20s5fhx6agawqb1wpvpvh4gcpa6g3"; depends=[ALL Biobase cluster]; }; - CopyNumber450k = derive2 { name="CopyNumber450k"; version="1.6.0"; sha256="0z4v6x140gzaxf06a73d2qd6dp8gvq62l8xb7bii21r7n089m14i"; depends=[Biobase BiocGenerics DNAcopy minfi preprocessCore]; }; - CopywriteR = derive2 { name="CopywriteR"; version="2.2.0"; sha256="0hmww433hyg4wgi2hx49mwrd4y65myyi00akys3mhdsxn3s0al13"; depends=[BiocParallel chipseq CopyhelpeR data_table DNAcopy futile_logger GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges matrixStats Rsamtools S4Vectors]; }; - CorMut = derive2 { name="CorMut"; version="1.12.0"; sha256="0ldqw4g15i4r1nv74msn97c75wcr1nvwk1ffnkafvnc8bwcfzfmy"; depends=[igraph seqinr]; }; - Cormotif = derive2 { name="Cormotif"; version="1.16.0"; sha256="0kx4h5c3vqr0x7swgq7fbkfqpknkapvqwvfmk42yh26vlabaf9cr"; depends=[affy limma]; }; - CoverageView = derive2 { name="CoverageView"; version="1.6.0"; sha256="0z3z2s5p1xrc04gzmmry3n9qqk4cam2p7pw7mak8kiswdraba7iz"; depends=[BiocGenerics GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; }; - DAPAR = derive2 { name="DAPAR"; version="1.0.0"; sha256="1fcsgrhs64dbr11bzi9zr4ddam5z0an26pfdd06v6i80yxx95zsq"; depends=[Cairo ggplot2 gplots impute imputeLCMD knitr lattice limma MSnbase norm pcaMethods png preprocessCore RColorBrewer reshape2 tmvtnorm XLConnect]; }; - DART = derive2 { name="DART"; version="1.18.0"; sha256="0xghg36gfd6hyd8zd3l9c2ffk2s0c8jpgg8skvg7d70hzhm47ldb"; depends=[igraph]; }; - DASiR = derive2 { name="DASiR"; version="1.10.0"; sha256="1by2655qvskzynvbh47vydm6nl2cmnfqqs25453k29n672a6yyw4"; depends=[Biostrings GenomicRanges IRanges XML]; }; - DAVIDQuery = derive2 { name="DAVIDQuery"; version="1.29.0"; sha256="0gvm6qjx8y61nbnbz66md74pfc4awj4900pjr8q1m5sip5yzbxj2"; depends=[RCurl]; }; - DBChIP = derive2 { name="DBChIP"; version="1.14.0"; sha256="1x876cv2j0bdb7jflm663bp7xk32rsxpf9jwwskbl8r4r1ffsapa"; depends=[DESeq edgeR]; }; - DChIPRep = derive2 { name="DChIPRep"; version="1.0.4"; sha256="0cwggkpbza25r2yssyhs9zkwzncmxkd406k2sn2y0rq1kdi08hj2"; depends=[assertthat DESeq2 fdrtool GenomicRanges ggplot2 plyr reshape2 S4Vectors smoothmest tidyr]; }; - DECIPHER = derive2 { name="DECIPHER"; version="1.16.1"; sha256="0bh3c0v3fpvb9k7n3d405615hgp08fq463xlc67wz9h3l47wjrh7"; depends=[Biostrings DBI IRanges RSQLite S4Vectors XVector]; }; - DEDS = derive2 { name="DEDS"; version="1.44.0"; sha256="079c3in183ybp0c46hqh99grqmbshsnrcax3qz08z5xbc394azna"; depends=[]; }; - DEGraph = derive2 { name="DEGraph"; version="1.22.0"; sha256="0bjyvw218f8z0qn655idvrhg79jshya9qprmlwy28h81cn548pm8"; depends=[graph KEGGgraph lattice mvtnorm NCIgraph R_methodsS3 R_utils RBGL Rgraphviz rrcov]; }; - DEGreport = derive2 { name="DEGreport"; version="1.6.1"; sha256="09srzwgjqwbadxj7a7rs1dylyqm8k7f4hjrhsb3k06nsbjfbfyd0"; depends=[edgeR ggplot2 Nozzle_R1 plyr quantreg]; }; - DEGseq = derive2 { name="DEGseq"; version="1.24.0"; sha256="0yzi6bil4qj85qxa843j3s6m6qb33gy73s6fyap94cjqj72v6809"; depends=[qvalue samr]; }; - DESeq = derive2 { name="DESeq"; version="1.22.1"; sha256="14rc1zcn4a7hkm43ca9js5ffhcm3awjrpl5bx66fj3szibjnnzcb"; depends=[Biobase BiocGenerics genefilter geneplotter lattice locfit MASS RColorBrewer]; }; - DESeq2 = derive2 { name="DESeq2"; version="1.10.1"; sha256="0f3jz578z83bzlqv27vhbcrz4lab6qycf6dy4cdfgvybx1k35dn9"; depends=[Biobase BiocGenerics BiocParallel genefilter geneplotter GenomicRanges ggplot2 Hmisc IRanges locfit Rcpp RcppArmadillo S4Vectors SummarizedExperiment]; }; - DEXSeq = derive2 { name="DEXSeq"; version="1.16.10"; sha256="0rz2zvwwc13zjxlfqv38kx1kid6qqsii5gflhaaa4xgp8qk3y9f1"; depends=[Biobase BiocGenerics BiocParallel biomaRt DESeq2 genefilter geneplotter GenomicRanges hwriter IRanges RColorBrewer Rsamtools statmod stringr]; }; - DFP = derive2 { name="DFP"; version="1.28.0"; sha256="186f8lkw7c37mxixp8qa0xg21c47yf6da1l80k7ngdan86q80cs2"; depends=[Biobase]; }; - DMRcaller = derive2 { name="DMRcaller"; version="1.2.0"; sha256="1rkzbfaa7bx3bpfdppx3xzrpxinmgj1frzxird966xk2b40m4bd4"; depends=[GenomicRanges IRanges Rcpp RcppRoll S4Vectors]; }; - DMRcate = derive2 { name="DMRcate"; version="1.6.52"; sha256="0nvwh7jd62yh5v12s1b71797zawkaj3x4ibmgmzisg8zkxpl8fwq"; depends=[DMRcatedata DSS GenomicRanges Gviz IRanges limma minfi plyr]; }; - DMRforPairs = derive2 { name="DMRforPairs"; version="1.6.0"; sha256="0b5mkhb5gkvfccvpgvklb3ksnq9gv6napcvxzcrph46nmm11i8zc"; depends=[GenomicRanges Gviz R2HTML]; }; - DNABarcodes = derive2 { name="DNABarcodes"; version="1.0.0"; sha256="1wc2rcd7bc2yawm20frnx6xrkflglkcc9l27l91l349pdgsidcpm"; depends=[BH Matrix Rcpp]; }; - DNAcopy = derive2 { name="DNAcopy"; version="1.44.0"; sha256="1c1px4rbr36xx929hp59k7ca9k5ab66qmn8k63fk13278ncm6h66"; depends=[]; }; - DOQTL = derive2 { name="DOQTL"; version="1.6.0"; sha256="0sl7a1hhszrfxn52iw7cz6sl38y7mwk4giw3a7kqj22f1p6bhc6y"; depends=[annotate annotationTools Biobase BiocGenerics biomaRt BSgenome_Mmusculus_UCSC_mm10 corpcor doParallel foreach fpc GenomicRanges hwriter IRanges iterators mclust QTLRel regress rhdf5 Rsamtools RUnit VariantAnnotation XML]; }; - DOSE = derive2 { name="DOSE"; version="2.8.2"; sha256="1mbp55swmnb8ag5c8cz30wxrr0xiwhrbl6z6r6ls20cvldzc2dfa"; depends=[AnnotationDbi DO_db ggplot2 GOSemSim igraph plyr qvalue reshape2 scales]; }; - DSS = derive2 { name="DSS"; version="2.10.0"; sha256="06a7cs9i12p9zfv52hl4v3fll4dhaapjhq6fqc58mqlzfa8qlwdm"; depends=[Biobase bsseq]; }; - DTA = derive2 { name="DTA"; version="2.16.0"; sha256="1j3dab7w9nqnbxyckwxhm733dvpdqyg22h60ipijyjwq2d1l8znc"; depends=[LSD scatterplot3d]; }; - DeMAND = derive2 { name="DeMAND"; version="1.0.0"; sha256="1dcq5hvpdaihagg1rasbrhamaf938zh5b1lh7ynd0q52qpr5fm56"; depends=[KernSmooth]; }; - DeconRNASeq = derive2 { name="DeconRNASeq"; version="1.12.0"; sha256="1dnq44l20b2n9skyz9kl4dck5vlir2jiyy265jgvgw4xji1gwi7l"; depends=[ggplot2 limSolve pcaMethods]; }; - DiffBind = derive2 { name="DiffBind"; version="1.16.3"; sha256="1mgnjfd3k5d44lzlzs4wms7mljbfrpqcs50g7jj4wk8y7jb21qyx"; depends=[amap edgeR GenomicAlignments GenomicRanges gplots IRanges lattice limma locfit RColorBrewer Rsamtools SummarizedExperiment systemPipeR zlibbioc]; }; - DiffLogo = derive2 { name="DiffLogo"; version="1.0.0"; sha256="10p93wwndvr2y4mfnh7y23gyr9i7lskgp1sa43261s4zjhynsp1k"; depends=[cba]; }; - DirichletMultinomial = derive2 { name="DirichletMultinomial"; version="1.12.1"; sha256="1izxlcj4niyj2f4wqfjpajrki7lggr1xd8kvjmhmbqz1p932rryf"; depends=[IRanges S4Vectors]; }; - DriverNet = derive2 { name="DriverNet"; version="1.10.0"; sha256="15iimcjdj28nbiksc9v6gw2i9mpkvbwkk8zcia1b7yklwb33assp"; depends=[]; }; - DrugVsDisease = derive2 { name="DrugVsDisease"; version="2.10.2"; sha256="168dajb9ism63k4kgj37b6znkia3ch6p3rzbzzjy3qbyyazzd9b2"; depends=[affy annotate ArrayExpress BiocGenerics biomaRt cMap2data DrugVsDiseasedata GEOquery hgu133a_db hgu133a2_db hgu133plus2_db limma qvalue RUnit xtable]; }; - DupChecker = derive2 { name="DupChecker"; version="1.8.0"; sha256="0p75kq178mls765q2v22bj7a727hb1v5rj4wkcagxavcls92vg0p"; depends=[R_utils RCurl]; }; - DynDoc = derive2 { name="DynDoc"; version="1.48.0"; sha256="098idkx8m01gy0rylh67v5qnbx8bplyymc9il5sfpdv1hpc9abm3"; depends=[]; }; - EBImage = derive2 { name="EBImage"; version="4.12.2"; sha256="1p49dap5nn9nwpglssl7fmlgvi1a1k0cpzdxph6x82kcm346srn4"; depends=[abind BiocGenerics fftwtools jpeg locfit png tiff]; }; - EBSeq = derive2 { name="EBSeq"; version="1.10.0"; sha256="19slkx8b9p54vg4d3895kjsz4gij9pag1i3f351ypn0yx19skb80"; depends=[blockmodeling gplots testthat]; }; - EBSeqHMM = derive2 { name="EBSeqHMM"; version="1.4.0"; sha256="02ba8famhbp4nxkg8jkwzs63qkfi7hi03h6w1igl2xn2343fnla3"; depends=[EBSeq]; }; - EBarrays = derive2 { name="EBarrays"; version="2.34.0"; sha256="06kh68i7fjbi99rl8jp9vhbpywsr0x0fmyny83gzkbr192c8dvdw"; depends=[Biobase cluster lattice]; }; - EBcoexpress = derive2 { name="EBcoexpress"; version="1.14.1"; sha256="1xdgzw4pik02mzs6h4fv3x3z4kgmz2am7562b7q83ppv4hr2qjgq"; depends=[EBarrays mclust minqa]; }; - EDASeq = derive2 { name="EDASeq"; version="2.4.1"; sha256="1jjk36sjbxs4sa2j87bayi5prgk3zmkc9vnm0grj9lgjdm6ficbb"; depends=[AnnotationDbi aroma_light Biobase BiocGenerics biomaRt Biostrings DESeq GenomicFeatures GenomicRanges IRanges Rsamtools ShortRead]; }; - EDDA = derive2 { name="EDDA"; version="1.8.0"; sha256="0gqgq57a11k7iygjyf3bszx8gm90a8frabmzib7kk84k3wrvynqg"; depends=[baySeq DESeq edgeR Rcpp ROCR snow]; }; - ELBOW = derive2 { name="ELBOW"; version="1.6.0"; sha256="1kpprsv1s08qks10raqdh82c9w8dg0saxa1ahhnk1a2whzxj0n3m"; depends=[]; }; - ELMER = derive2 { name="ELMER"; version="1.2.1"; sha256="0ppr30l43fiak0x798w3i2w1as1gycxnd34iplm1i39lzsdni7z4"; depends=[BiocGenerics ELMER_data GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra Homo_sapiens IlluminaHumanMethylation450kanno_ilmn12_hg19 IRanges minfi reshape S4Vectors]; }; - EMDomics = derive2 { name="EMDomics"; version="2.0.0"; sha256="13rcbkyyk1l6xqklmws1ilnzyhal7g99499rnh0wlxbrwsb9n51w"; depends=[BiocParallel CDFt emdist ggplot2 matrixStats preprocessCore]; }; - ENCODExplorer = derive2 { name="ENCODExplorer"; version="1.2.1"; sha256="18m42w9amjxz3d50zx5p7nvjc4kjbqhlmrqcnxy4jfyzm7sm7qby"; depends=[jsonlite RSQLite]; }; - ENVISIONQuery = derive2 { name="ENVISIONQuery"; version="1.18.0"; sha256="1fyp6qyvw5cbapnpjx1s86pss2xhv98s4lqxfxwrsng6p1jh5z89"; depends=[rJava XML]; }; - ENmix = derive2 { name="ENmix"; version="1.4.1"; sha256="191mm9pn53sys62736qf8kn84jxr9x5r39j4qbwyqq32gsjvq6ji"; depends=[Biobase doParallel foreach geneplotter impute MASS minfi preprocessCore sva wateRmelon]; }; - EasyqpcR = derive2 { name="EasyqpcR"; version="1.12.0"; sha256="0s0ir8bpj3fwg79mzqz57c0crkqqq7hywiwyihcz2cykhsm1r11g"; depends=[gWidgetsRGtk2 matrixStats plotrix plyr]; }; - EnrichedHeatmap = derive2 { name="EnrichedHeatmap"; version="1.0.0"; sha256="02mdn7isc58fznm55qxfp1an19wfl3kj509467c9r10b5zl5mglk"; depends=[ComplexHeatmap GenomicRanges IRanges locfit matrixStats]; }; - EnrichmentBrowser = derive2 { name="EnrichmentBrowser"; version="2.0.14"; sha256="1sia76zmcpb8r3fq136ilcpnwpsa3myl385b3k2kc3hpqchi0rj1"; depends=[AnnotationDbi Biobase biocGraph biomaRt ComplexHeatmap DESeq2 EDASeq edgeR geneplotter GO_db graph GSEABase hwriter KEGGgraph KEGGREST limma MASS mixtools neaGUI npGSEA PathNet pathview ReportingTools Rgraphviz S4Vectors safe SparseM SPIA stringr SummarizedExperiment topGO]; }; - ExiMiR = derive2 { name="ExiMiR"; version="2.12.0"; sha256="0c37jkych7pgahfdbwqqffg6746cfxwv7q10pqpnjsdg075pw8q9"; depends=[affy affyio Biobase limma preprocessCore]; }; - ExpressionView = derive2 { name="ExpressionView"; version="1.22.0"; sha256="1gwhz8q5kyi01jwlwpd39dp292pc6k4v1w0al4653151qb5m55ja"; depends=[AnnotationDbi bitops caTools eisa GO_db isa2 KEGG_db]; }; - FEM = derive2 { name="FEM"; version="2.6.0"; sha256="1pwbn2igwrd50wn8402f3zwd22h4c8anjmbrls2i6h86ardl046f"; depends=[AnnotationDbi BiocGenerics corrplot graph igraph impute limma marray Matrix org_Hs_eg_db]; }; - FGNet = derive2 { name="FGNet"; version="3.4.0"; sha256="0pvzy185wqd9rnzc2py92zmpxywi8ysk9a7dh3415m748knw4rz8"; depends=[hwriter igraph plotrix png R_utils RColorBrewer reshape2 XML]; }; - FISHalyseR = derive2 { name="FISHalyseR"; version="1.4.0"; sha256="0vn83slaaphw9nxp7yp6v8xp5n6kqd2zzvv7v4bn9jfi4cskxbib"; depends=[abind EBImage]; }; - FRGEpistasis = derive2 { name="FRGEpistasis"; version="1.6.0"; sha256="05q3cbm9v9wq0av607gx526989a88lsbdaaskgac4dcfwwb6s5xy"; depends=[fda MASS]; }; - FindMyFriends = derive2 { name="FindMyFriends"; version="1.0.7"; sha256="0ga0iwscbcczysldizgp8g19gsyszfw4vgbgs45q9px95603z0cg"; depends=[Biobase BiocParallel Biostrings digest dplyr filehash ggdendro ggplot2 gtable igraph IRanges kebabs Matrix Rcpp reshape2 S4Vectors]; }; - FlowRepositoryR = derive2 { name="FlowRepositoryR"; version="1.2.0"; sha256="1y1y7g9111z55cwi2ph44yqib41234g77xwsybk6irlq1anizz7p"; depends=[RCurl XML]; }; - FlowSOM = derive2 { name="FlowSOM"; version="1.2.0"; sha256="019qzh7h0bygxi4b4si1zxavx99121has7jry7swkglwss2qx0ri"; depends=[BiocGenerics ConsensusClusterPlus flowCore igraph tsne]; }; - FourCSeq = derive2 { name="FourCSeq"; version="1.4.0"; sha256="1xh0l90hp6jy9j0xkh78dm9kyk90zzlg04yfrzd4v12mwljs8r19"; depends=[Biobase Biostrings DESeq2 fda GenomicAlignments GenomicRanges ggbio ggplot2 gtools LSD Matrix reshape2 Rsamtools rtracklayer SummarizedExperiment]; }; - FunciSNP = derive2 { name="FunciSNP"; version="1.12.0"; sha256="1125ismkp2sprshv4b39l6bycdlry3933jaliva17c0bgjr27jhm"; depends=[AnnotationDbi ChIPpeakAnno FunciSNP_data GenomicRanges ggplot2 IRanges org_Hs_eg_db plyr reshape Rsamtools rtracklayer scales snpStats TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; - GENE_E = derive2 { name="GENE.E"; version="1.10.0"; sha256="1czm1j144i842d7lf01c9gmyifikp4a66sq49i7rgpzbiz3pndkf"; depends=[RCurl rhdf5]; }; - GENESIS = derive2 { name="GENESIS"; version="2.0.1"; sha256="1v8d114z6sbqqvf4sbw3wzifzqrig2yjmppmq0jnjyrjag3ph1ab"; depends=[gdsfmt GWASTools]; }; - GEOmetadb = derive2 { name="GEOmetadb"; version="1.30.0"; sha256="1jw4n5p7vd75qhz7r7ll6ydsdrgmrclb8p0sks4xz3l87cd03pb3"; depends=[GEOquery RSQLite]; }; - GEOquery = derive2 { name="GEOquery"; version="2.36.0"; sha256="18scw6jx4z7zab653if686cn1kyy0v2i7dfvvxb05wsrj7blmai1"; depends=[Biobase RCurl XML]; }; - GEOsearch = derive2 { name="GEOsearch"; version="1.0.1"; sha256="1zag3rg2cfs0zfh092rzwhshnkncrv2p88flz9hy2n350k1xnyc4"; depends=[org_Hs_eg_db org_Mm_eg_db]; }; - GEOsubmission = derive2 { name="GEOsubmission"; version="1.22.0"; sha256="0djm7r2g2c0k5img45v9a56gfppx0qwfla8di01fvphlwag21gi1"; depends=[affy Biobase]; }; - GEWIST = derive2 { name="GEWIST"; version="1.14.0"; sha256="0k6zk4g0rsfjvf30sx588xfrvi31vwnh5fysz9rigbkvrhayv12r"; depends=[car]; }; - GGBase = derive2 { name="GGBase"; version="3.32.0"; sha256="15vvwigv9xy87dl2c795c3abpnrzr364m4sbslmns403rg8dpsiw"; depends=[AnnotationDbi Biobase BiocGenerics digest genefilter GenomicRanges IRanges limma Matrix S4Vectors snpStats SummarizedExperiment]; }; - GGtools = derive2 { name="GGtools"; version="5.6.0"; sha256="1ndvlyfzjn519z9zh6kf5sdjaz3ckracgyf2lxp23nchm2311lf0"; depends=[AnnotationDbi biglm Biobase BiocGenerics Biostrings bit data_table ff GenomeInfoDb GenomicRanges GGBase ggplot2 Gviz hexbin IRanges iterators reshape2 ROCR Rsamtools rtracklayer S4Vectors snpStats VariantAnnotation]; }; - GLAD = derive2 { name="GLAD"; version="2.34.0"; sha256="18ahik48499j6yf6h7k8f05s7w50b5fzs2hcz33zz36mlppz4xnr"; depends=[]; }; - GOFunction = derive2 { name="GOFunction"; version="1.18.0"; sha256="00pdxf24sxdnh31h69c5zjhl1j2jv1ag91ay3a9w62p07bcg82l6"; depends=[AnnotationDbi Biobase GO_db graph Rgraphviz SparseM]; }; - GOSemSim = derive2 { name="GOSemSim"; version="1.28.2"; sha256="04qyxy9adqk37hwgnx4kqa8p8fsrl1d1cf0cc9y2mq6wxq0ilw27"; depends=[AnnotationDbi GO_db Rcpp]; }; - GOSim = derive2 { name="GOSim"; version="1.8.0"; sha256="14dyazr7p9p7h1cckbmd5yjj76718lqgfnqbcrrz52qyk0dqz6wx"; depends=[annotate AnnotationDbi cluster corpcor flexmix GO_db graph Matrix org_Hs_eg_db RBGL Rcpp topGO]; }; - GOTHiC = derive2 { name="GOTHiC"; version="1.6.0"; sha256="0fbrflqyfihks23mxmqn8v4mm5m1ff4zzg52lfxdz3an72mvznv6"; depends=[BiocGenerics Biostrings BSgenome data_table GenomicRanges ggplot2 IRanges rtracklayer S4Vectors ShortRead]; }; - GOexpress = derive2 { name="GOexpress"; version="1.4.1"; sha256="16ckxdlzsx8p2qli55008j59xf88yf7b62z3nilxh5fvnr92900w"; depends=[Biobase biomaRt ggplot2 gplots randomForest RColorBrewer stringr VennDiagram]; }; - GOstats = derive2 { name="GOstats"; version="2.36.0"; sha256="0jxzlipz27pm2iijgiczpnjlda9fj8y00sbbksyyr3i1rjx72vp5"; depends=[annotate AnnotationDbi AnnotationForge Biobase Category GO_db graph RBGL]; }; - GOsummaries = derive2 { name="GOsummaries"; version="2.4.5"; sha256="0qbvgg1g17dxrn80smrd0ab0mk63xbzv8zrrdrlwd4fdvr0ysc96"; depends=[ggplot2 gProfileR gtable limma plyr Rcpp reshape2]; }; - GRENITS = derive2 { name="GRENITS"; version="1.22.0"; sha256="1i1mbc7sd0irc0da0pz876dibvyx451h9475hlq9ydw6q04kfjzq"; depends=[ggplot2 Rcpp RcppArmadillo reshape2]; }; - GSAR = derive2 { name="GSAR"; version="1.4.0"; sha256="0l0vid5ba3yj8ywdj904zvm6gyvig1drxvr1b4xidyd0g0fpl6a9"; depends=[igraph]; }; - GSCA = derive2 { name="GSCA"; version="1.8.0"; sha256="06pjmi5xc8hld09pmw87lwk5wa7cyd9qb2h32qmblc56wai7qxny"; depends=[ggplot2 gplots RColorBrewer reshape2 rhdf5 shiny sp]; }; - GSEABase = derive2 { name="GSEABase"; version="1.32.0"; sha256="1jjl5x7qrw83v0g0d6c27g5jk5zwjd31h0p4ghprr7y34cbddaas"; depends=[annotate AnnotationDbi Biobase BiocGenerics graph XML]; }; - GSEAlm = derive2 { name="GSEAlm"; version="1.30.0"; sha256="1gxa973l3m3jdxmvx0y0fnhpxd81bg03j6p9b0dcbhw93pdnjhsv"; depends=[Biobase]; }; - GSRI = derive2 { name="GSRI"; version="2.18.0"; sha256="1jjzkgaf2scnqasjd1nbxrfm5k97psyxy0d2grb23aznfviynmsy"; depends=[Biobase fdrtool genefilter GSEABase les]; }; - GSReg = derive2 { name="GSReg"; version="1.4.0"; sha256="1qq0lrx2mvwzf7s4v8i162fpb68njm5sscz4h22hyskdxrjkk8vp"; depends=[]; }; - GSVA = derive2 { name="GSVA"; version="1.18.0"; sha256="1w17a5d4vd4gibg88npbx86pmcg7wzqnih1a3g4mpvld0wf2xs8q"; depends=[Biobase BiocGenerics GSEABase]; }; - GUIDEseq = derive2 { name="GUIDEseq"; version="1.0.4"; sha256="03hswcshnvb7pmacxnx6lrqqy6fxprjkv9sydjkca5nvd84i7bdz"; depends=[BiocGenerics BiocParallel Biostrings BSgenome ChIPpeakAnno CRISPRseek data_table GenomicRanges IRanges matrixStats S4Vectors]; }; - GWASTools = derive2 { name="GWASTools"; version="1.16.1"; sha256="09zkwh5zcrfss2kdj81jdcs6i9i123xis3myj73f4si74bd1dq83"; depends=[Biobase DBI DNAcopy gdsfmt GWASExactHW lmtest logistf quantsmooth RSQLite sandwich survival]; }; - GeneAnswers = derive2 { name="GeneAnswers"; version="2.12.0"; sha256="1gacvc1vd0sl6jn0r14w4n37hsrmx6m5k1l7d2a5m3qssyk6l6n3"; depends=[annotate Biobase downloader Heatplus igraph MASS RBGL RColorBrewer RCurl RSQLite XML]; }; - GeneBreak = derive2 { name="GeneBreak"; version="1.0.0"; sha256="0bzb1wzj9jj069x6ikns4743h5kc4nmdf5j7mm2w2lrfa1x1v1dd"; depends=[CGHbase CGHcall GenomicRanges QDNAseq]; }; - GeneExpressionSignature = derive2 { name="GeneExpressionSignature"; version="1.16.0"; sha256="1vb7qj2pgg8s51c43y12r1ar68jdaf3xrmmwvq8r182ky3cs45j7"; depends=[Biobase PGSEA]; }; - GeneGA = derive2 { name="GeneGA"; version="1.20.0"; sha256="1pnpcqrfvzff2fyakapkk48l76vx960617l2nbm0pbsv98sdygb2"; depends=[hash seqinr]; }; - GeneMeta = derive2 { name="GeneMeta"; version="1.42.0"; sha256="0r6ch9xylv3zfcfm95fy6civcg322dw43vadlw9asv9pkd80fai9"; depends=[Biobase genefilter]; }; - GeneNetworkBuilder = derive2 { name="GeneNetworkBuilder"; version="1.12.0"; sha256="00gqrsnfizf2gspqazjg6iyhvazgs67jsakx588643ss5fbdmxkv"; depends=[graph plyr Rcpp]; }; - GeneOverlap = derive2 { name="GeneOverlap"; version="1.6.0"; sha256="0hc7khxgpic2h5s60gnjrr89i4lq4v3jb8d1333bvi5yqvj45qip"; depends=[gplots RColorBrewer]; }; - GeneRegionScan = derive2 { name="GeneRegionScan"; version="1.26.0"; sha256="08wi95jgbf3ldylfhx78kc390bfj3wvl2ymvs9yqpjk57q8hjq8w"; depends=[affxparser Biobase Biostrings RColorBrewer]; }; - GeneSelectMMD = derive2 { name="GeneSelectMMD"; version="2.14.0"; sha256="05wcx826932i78k1fnl1ifjwzdz95i4bq0picm44wb4s13pv31my"; depends=[Biobase limma MASS survival]; }; - GeneSelector = derive2 { name="GeneSelector"; version="2.20.0"; sha256="179mjqk9w4zm33mhja7hmwphpnxsv32mh60avs2mqmq9fi9z6pdh"; depends=[Biobase limma multtest samr siggenes]; }; - GeneticsDesign = derive2 { name="GeneticsDesign"; version="1.38.0"; sha256="1yh8s40fr0yqbch7ix9y4p22ih0008xpjy5nn5x37y575l41hhwh"; depends=[gmodels gtools mvtnorm]; }; - GeneticsPed = derive2 { name="GeneticsPed"; version="1.32.0"; sha256="0ysrjrs30kqcfafjc5wzz2f4w59jhfk5ywyzn8rgagajvdzcg6z4"; depends=[gdata genetics MASS]; }; - GenoView = derive2 { name="GenoView"; version="1.3.0"; sha256="09k9xjmx3qmsfr3a4vrfgs73r0xsymf5m4gl0zjjk4cnfk7bs41v"; depends=[biovizBase GenomicRanges ggbio ggplot2 gridExtra]; }; - GenomeGraphs = derive2 { name="GenomeGraphs"; version="1.30.0"; sha256="1wkjcg6w95wlrdgaskc3xndl0azmxhxnsipf9qrj057gf2rpx7zf"; depends=[biomaRt]; }; - GenomeInfoDb = derive2 { name="GenomeInfoDb"; version="1.6.3"; sha256="1ggp005n2rlkad00ilzn95y4rd484yr1chdhnd6fwg45rbi94d63"; depends=[BiocGenerics IRanges S4Vectors]; }; - GenomicAlignments = derive2 { name="GenomicAlignments"; version="1.6.3"; sha256="02b9j1pfd39bkvb623k5k0ziq9rpw093hifqw65vb954dwj29jhd"; depends=[BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors SummarizedExperiment]; }; - GenomicFeatures = derive2 { name="GenomicFeatures"; version="1.22.13"; sha256="0n3rkj66la6wizgcsf2rmwcsyfxz9kv5zak337lmk1raqfnancz4"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings DBI GenomeInfoDb GenomicRanges IRanges RCurl RSQLite rtracklayer S4Vectors XVector]; }; - GenomicFiles = derive2 { name="GenomicFiles"; version="1.6.2"; sha256="14f3zw2vxmb3b6gxxvdvfj34hxp3b3n4k6qx80ycw8kpdr5r73n4"; depends=[BiocGenerics BiocParallel GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; - GenomicInteractions = derive2 { name="GenomicInteractions"; version="1.4.2"; sha256="1a8b57dxla9hqzdn22jxb3ivl3i2xz41abrb7mgkxphgv55jf190"; depends=[BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gridExtra Gviz igraph IRanges Rsamtools S4Vectors stringr]; }; - GenomicRanges = derive2 { name="GenomicRanges"; version="1.22.4"; sha256="02df5683nrpn9d10ws8jz9b55nr9055hh882xp2i154xdddir0k0"; depends=[BiocGenerics GenomeInfoDb IRanges S4Vectors XVector]; }; - GenomicTuples = derive2 { name="GenomicTuples"; version="1.4.5"; sha256="0aiyk5hd6i6j5f2lp72nyqh8arp41aadzamdgkghwmnxhipm3czs"; depends=[Biobase BiocGenerics data_table GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; }; - Genominator = derive2 { name="Genominator"; version="1.24.0"; sha256="1rqzxbji5wh6dshjsprj1mzps08l07gxmjir9naj6lsj2q0xhn9p"; depends=[BiocGenerics DBI GenomeGraphs IRanges RSQLite]; }; - GlobalAncova = derive2 { name="GlobalAncova"; version="3.38.0"; sha256="011yf2bng9qb7rgds670ranp9z5qm569405qpk5y6xb9rvnpnxy3"; depends=[annotate AnnotationDbi corpcor globaltest]; }; - GoogleGenomics = derive2 { name="GoogleGenomics"; version="1.2.0"; sha256="1z87jmd5vzg5v93bv9k3998wqhnk5p2v9d2qr9g0xxjvxw2q78fm"; depends=[Biostrings GenomeInfoDb GenomicAlignments GenomicRanges httr IRanges rjson Rsamtools S4Vectors VariantAnnotation]; }; - GraphAT = derive2 { name="GraphAT"; version="1.42.0"; sha256="036g6cc9r96jgj7nhlgmq0jn553hajyalwibkdnw7qy88d45c8qz"; depends=[graph MCMCpack]; }; - GraphAlignment = derive2 { name="GraphAlignment"; version="1.34.0"; sha256="0af3m51zs35v84h4vj02fwm50iw2rk32jrixdbcw033ispl7wrkv"; depends=[]; }; - GraphPAC = derive2 { name="GraphPAC"; version="1.12.1"; sha256="1fa64jam3cl1khv8jspwjb9myifmgx0kwg0b601bia578bjcdj7d"; depends=[igraph iPAC RMallow TSP]; }; - GreyListChIP = derive2 { name="GreyListChIP"; version="1.2.0"; sha256="0pnyk05fri2pgin9ppyq2lk5rsc4cays5za6vhgdsjvv08sxyykz"; depends=[BSgenome GenomeInfoDb GenomicAlignments GenomicRanges MASS Rsamtools rtracklayer]; }; - Guitar = derive2 { name="Guitar"; version="1.7.0"; sha256="0ld2ghyq3f02as01jzwkbc0wbly1g40bqy5mmvvrj87b8l235h10"; depends=[GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges Rsamtools rtracklayer]; }; - Gviz = derive2 { name="Gviz"; version="1.14.4"; sha256="16vca86mrpl2m9w0456cj7wj6dhdg0iqxj3z9dlia5wh56p00ryp"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings biovizBase BSgenome digest GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges lattice latticeExtra matrixStats RColorBrewer Rsamtools rtracklayer S4Vectors XVector]; }; - HCsnip = derive2 { name="HCsnip"; version="1.10.0"; sha256="0x4lpx13bhr2w5yhrcsc89g0x4q1dy0j588h210ziizgh67qqcrs"; depends=[Biobase clusterRepro coin fpc impute randomForestSRC sigaR sm survival]; }; - HDTD = derive2 { name="HDTD"; version="1.4.0"; sha256="0d3aycz0j34iqg8xqqnga8x6ynwn0b551qizpqby8j5whlrgdw76"; depends=[]; }; - HELP = derive2 { name="HELP"; version="1.28.0"; sha256="0m5hk3215q2gr59agzjzdbqkxkf292injxrn1ji1n29vbfzjhd41"; depends=[Biobase]; }; - HEM = derive2 { name="HEM"; version="1.42.0"; sha256="08xbpvw3bm3hsri7z8gvivffi99ai0b4a17jkah1siy5d3wnzvci"; depends=[Biobase]; }; - HIBAG = derive2 { name="HIBAG"; version="1.6.0"; sha256="0haxbzylzprcylc90aw9637g7isdvrd1j9936rnzjv442qp6a0i0"; depends=[]; }; - HMMcopy = derive2 { name="HMMcopy"; version="1.12.0"; sha256="1l0ynzk8cg9i1dcb2q724p0gk0gxcrcmr9ndlvjm1jq9f2cd9lma"; depends=[geneplotter IRanges]; }; - HTSFilter = derive2 { name="HTSFilter"; version="1.10.0"; sha256="0yfmjn1hq2dr8bh3f77kl0i4md18q4l6sfpvlsi7bf12r9cg3677"; depends=[Biobase DESeq DESeq2 edgeR]; }; - HTSanalyzeR = derive2 { name="HTSanalyzeR"; version="2.22.0"; sha256="01mb273v1i9k0d2gbl9mpmr4rrnx49s3srv0yh1znvmwx0hmfyq2"; depends=[AnnotationDbi biomaRt BioNet cellHTS2 graph GSEABase igraph RankProd]; }; - HTSeqGenie = derive2 { name="HTSeqGenie"; version="3.20.1"; sha256="0bg86jiv45899gw9x4hhvqf525vfwkzj2b5jk7026cq5vmjc0k5j"; depends=[BiocGenerics BiocParallel Biostrings Cairo chipseq GenomicAlignments GenomicFeatures GenomicRanges gmapR hwriter IRanges Rsamtools rtracklayer S4Vectors ShortRead VariantAnnotation VariantTools]; }; - HTqPCR = derive2 { name="HTqPCR"; version="1.24.0"; sha256="1bjnirp3ha5ymnv1xyh02d77w7gp36qk62gjfzkbsnhwbwajpdkx"; depends=[affy Biobase gplots limma RColorBrewer]; }; - Harshlight = derive2 { name="Harshlight"; version="1.42.0"; sha256="1b2ggv680ckj0350a2y36vlm1dszk5gx3b60qf61cqb8a0mzcyb4"; depends=[affy altcdfenvs Biobase]; }; - Heatplus = derive2 { name="Heatplus"; version="2.16.0"; sha256="1mp31d9gd313kzx2d6nymapqxhzpd8n15li5xl52wq10w574lpc0"; depends=[RColorBrewer]; }; - HiTC = derive2 { name="HiTC"; version="1.14.0"; sha256="0vdlj9jslvqx73d766bn9zr8drnhd334n053xmc340s2vjs7s4nq"; depends=[Biostrings GenomeInfoDb GenomicRanges IRanges Matrix RColorBrewer rtracklayer]; }; - HilbertCurve = derive2 { name="HilbertCurve"; version="1.0.0"; sha256="03yb9w4qn7c1p4yvgkcf6bjq3ms52w9jydknjryzf65gciy9m2mj"; depends=[GenomicRanges HilbertVis IRanges png]; }; - HilbertVis = derive2 { name="HilbertVis"; version="1.28.0"; sha256="1shs6frmbfvkl8pg1nbiqlm5i9ngq6pin67gkxs5v8xw5q9rk7ya"; depends=[lattice]; }; - HilbertVisGUI = derive2 { name="HilbertVisGUI"; version="1.28.1"; sha256="1hqfjy4c4vqyz62ycia8b696cglqxbav97cxbivd6f8a578a4d5f"; depends=[HilbertVis]; }; - HybridMTest = derive2 { name="HybridMTest"; version="1.14.0"; sha256="0mgdqp6s7lfywxqymap27lbz6hgmq6rczmy2dnhdk2wwl96gp68k"; depends=[Biobase fdrtool MASS survival]; }; - IMPCdata = derive2 { name="IMPCdata"; version="1.4.0"; sha256="06ch3cp15ffch82gdqiwnnlakshdl2mmvq99c9iq5prp89vk41d6"; depends=[rjson]; }; - INPower = derive2 { name="INPower"; version="1.6.0"; sha256="1jdsvglgipmzjjaz972b7xbcykynck4326r8d5bxm8yh2hv7nshv"; depends=[mvtnorm]; }; - INSPEcT = derive2 { name="INSPEcT"; version="1.0.0"; sha256="0a7jkw4wlp05aknzc9mf9r3kfrzgmhdjmykp796s3cyjjxksk74j"; depends=[Biobase BiocParallel deSolve GenomicFeatures GenomicRanges IRanges preprocessCore pROC rootSolve]; }; - IONiseR = derive2 { name="IONiseR"; version="1.0.1"; sha256="0qfvrzc0ik868160zz7pwlcq1mycf9ax0mdx5gv2zvqmaxibjkiz"; depends=[BiocGenerics Biostrings data_table dplyr ggplot2 magrittr rhdf5 ShortRead tidyr XVector]; }; - IPPD = derive2 { name="IPPD"; version="1.18.0"; sha256="1kl4rx6rdmpkm7bd2w8ncvz4sb8x6wljvxkif2l17yflsp1wjvp2"; depends=[bitops digest MASS Matrix XML]; }; - IRanges = derive2 { name="IRanges"; version="2.4.8"; sha256="0hi5k1j5jm4xrg1l506g279qw1xkvp1gg1zgsjzpbng4vx4k4iyl"; depends=[BiocGenerics S4Vectors]; }; - ITALICS = derive2 { name="ITALICS"; version="2.30.0"; sha256="0bm38swbkqnf6nq17p49bh1lvpdvyz4vqv645awmfb5h7sfkhc3v"; depends=[affxparser DBI GLAD ITALICSData oligo oligoClasses pd_mapping50k_xba240]; }; - IVAS = derive2 { name="IVAS"; version="1.2.0"; sha256="05sm8zhjqm3b966s9hc9dmsxajzry60wcz1qbxn989nly270cnqh"; depends=[AnnotationDbi BiocGenerics doParallel foreach GenomeInfoDb GenomicFeatures GenomicRanges IRanges lme4 Matrix S4Vectors]; }; - Icens = derive2 { name="Icens"; version="1.42.0"; sha256="14a2fsddq2vq7b5yaairxg2p3ivrfck1r91sc2izbiyvkqk5qjb4"; depends=[survival]; }; - IdMappingAnalysis = derive2 { name="IdMappingAnalysis"; version="1.14.0"; sha256="11rn1b6665b64h3a4mb8qkg5kp5l9ha6aa14f512k7lzs1vcczpm"; depends=[Biobase boot mclust R_oo rChoiceDialogs RColorBrewer]; }; - IdMappingRetrieval = derive2 { name="IdMappingRetrieval"; version="1.18.2"; sha256="0wl2ybv23z84rlq2szk46kvcdm0bmqy0mjga9n33wz1c04br2bxj"; depends=[AffyCompatible biomaRt ENVISIONQuery R_methodsS3 R_oo rChoiceDialogs RCurl XML]; }; - IdeoViz = derive2 { name="IdeoViz"; version="1.4.0"; sha256="17rdvqim46q3lwm4c4k1xyayn8x76v9sj34x2xsr7day1r5kssq3"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges RColorBrewer rtracklayer]; }; - Imetagene = derive2 { name="Imetagene"; version="1.0.0"; sha256="1di9nx5ad0wd17byn740azx9yb6hd12dzvlfl8s5iyas4z9qzwya"; depends=[d3heatmap ggplot2 metagene shiny shinyBS shinyFiles shinythemes]; }; - InPAS = derive2 { name="InPAS"; version="1.2.1"; sha256="0vwzm9cf2zzc7pzw2xp7a7jpg9phzcskb6zm6jwx23p005pd8qv3"; depends=[AnnotationDbi Biobase BiocParallel BSgenome cleanUpdTSeq depmixS4 GenomeInfoDb GenomicFeatures GenomicRanges Gviz IRanges limma preprocessCore S4Vectors seqinr]; }; - IsoGeneGUI = derive2 { name="IsoGeneGUI"; version="2.6.0"; sha256="1b7my9ri3kwi4rbdymcnwdjzv88pgdfjf2ax4gls0v4460hwg5az"; depends=[Biobase ff geneplotter goric Iso IsoGene jpeg multtest ORCME ORIClust orQA RColorBrewer Rcpp relimp tkrplot xlsx]; }; - KCsmart = derive2 { name="KCsmart"; version="2.28.0"; sha256="1bkc3ih97g0sr53wi4r0hdi6c46a7iabdsb7qy04mz7a8pa1g5ja"; depends=[BiocGenerics KernSmooth multtest siggenes]; }; - KEGGREST = derive2 { name="KEGGREST"; version="1.10.1"; sha256="05mn2wp5xg5xpwm8wdpzv4xhcrv08qmyqi5i3ssa46nj4yn8zcc4"; depends=[Biostrings httr png]; }; - KEGGgraph = derive2 { name="KEGGgraph"; version="1.28.0"; sha256="03lvm6qjalqwbi9i84b3glwf0kkagl3zh7cxhjd0jn7xzr20iw7q"; depends=[graph XML]; }; - KEGGprofile = derive2 { name="KEGGprofile"; version="1.12.0"; sha256="08yg0vn7d0yyamwj8s9bg9130y1dag34w5j9dhi00x7381jnrxwr"; depends=[AnnotationDbi biomaRt KEGG_db KEGGREST png TeachingDemos XML]; }; - LBE = derive2 { name="LBE"; version="1.38.0"; sha256="0gsckpx2903pz55mjc8a3g3w4w3q58cly40mnjb82aqjc5vd8zzk"; depends=[]; }; - LEA = derive2 { name="LEA"; version="1.2.0"; sha256="1mq5yhs9gq321ngrfqra3isfjp5isxz00f14ify4h7wjn2w5abnp"; depends=[]; }; - LMGene = derive2 { name="LMGene"; version="2.26.0"; sha256="0mfs8kpirwkv8salg6aacy0hr0zwmmxr7pzh88sxj3x71k2dclzi"; depends=[affy Biobase multtest survival]; }; - LOLA = derive2 { name="LOLA"; version="1.0.0"; sha256="0lr8rzgzimmnwz9q0yyxxpa8prc06rzy1agz4in6r2iqjwpb9dq9"; depends=[data_table GenomicRanges IRanges]; }; - LPE = derive2 { name="LPE"; version="1.44.0"; sha256="16cynjjqzji4ys6k61p9wgrwz0bnvcrqadq32i49ppfyxnf248pd"; depends=[]; }; - LPEadj = derive2 { name="LPEadj"; version="1.30.0"; sha256="0ll9n3wkaink16laj2y98hb0kx5dglz776zlwdfkw54l1fjvvj5h"; depends=[LPE]; }; - LVSmiRNA = derive2 { name="LVSmiRNA"; version="1.20.0"; sha256="1q43harvk7q5wb8yjffhvzs4dxl8h5vp60ngym5vcvapxr8iym3w"; depends=[affy Biobase BiocGenerics limma MASS quantreg SparseM vsn zlibbioc]; }; - LedPred = derive2 { name="LedPred"; version="1.2.0"; sha256="0zripgxpy0fr8d02k716frzbrrh1hdp85l7agk58yyhzw086b0bl"; depends=[akima e1071 GenomicRanges irr jsonlite plot3D plyr RCurl ROCR testthat]; }; - LiquidAssociation = derive2 { name="LiquidAssociation"; version="1.24.0"; sha256="0h20asshxybng9apaqlvwfl30db7cwf2nqknwrd52rdh3b2x4025"; depends=[Biobase geepack org_Sc_sgd_db yeastCC]; }; - LowMACA = derive2 { name="LowMACA"; version="1.2.0"; sha256="12jm8psg7rnrsxydcqzfgiryy6lk5mxyximfzn7hnqqvxbs3wc55"; depends=[BiocParallel Biostrings cgdsr data_table LowMACAAnnotation motifStack RColorBrewer reshape2 stringr]; }; - M3D = derive2 { name="M3D"; version="1.4.0"; sha256="088ghd9r5jr51179cj9hbk1dpj4f9fkrbgyghlq29w2bbgzc57xx"; depends=[BiSeq GenomicRanges IRanges]; }; - MAIT = derive2 { name="MAIT"; version="1.4.0"; sha256="0yhslwqij9b073if2zp7f9w4fcxx02w9qjp2sj29g9gj1xfyij5b"; depends=[agricolae CAMERA caret class e1071 gplots MASS pls plsgenomics Rcpp xcms]; }; - MANOR = derive2 { name="MANOR"; version="1.42.0"; sha256="0k2mg4bchjaabbbxhnjgc0j3r10hngc1al06dp7077h1yqrcr9v2"; depends=[GLAD]; }; - MBASED = derive2 { name="MBASED"; version="1.4.0"; sha256="0v56m2cdwq59drqxnpg3cg8cmwkq75wzrscyj7ajy1zp71m4kn4b"; depends=[BiocGenerics BiocParallel GenomicRanges RUnit SummarizedExperiment]; }; - MBAmethyl = derive2 { name="MBAmethyl"; version="1.4.0"; sha256="0knn0fgrqmddwiyip49gchp5fzz77fb3fndhyddb0xw752nqvw8p"; depends=[]; }; - MBCB = derive2 { name="MBCB"; version="1.24.0"; sha256="1qryzcjf3w138n12amch1zq2nl5nvagqqv422kcladapaq2lsgi2"; depends=[preprocessCore tcltk2]; }; - MCRestimate = derive2 { name="MCRestimate"; version="2.26.0"; sha256="1igfffsgz6m4rl2a5fnkb92r5x4qjr2yl8gaj3ws8478q3aq0bgd"; depends=[Biobase e1071 golubEsets pamr randomForest RColorBrewer]; }; - MEAL = derive2 { name="MEAL"; version="1.0.3"; sha256="1jrg6vw34hc8cg1ifyihrvya40x3f6ad77vp56wxdizr2wqp6h3q"; depends=[Biobase BiocGenerics DMRcate doParallel GenomicRanges ggplot2 IRanges limma minfi S4Vectors SNPassoc snpStats sva vegan]; }; - MEDIPS = derive2 { name="MEDIPS"; version="1.20.1"; sha256="0p5cg0nak7b6dr6l3j2abpm45dg644gbwl4w50ksqc1ahjksh3ir"; depends=[biomaRt Biostrings BSgenome DNAcopy edgeR GenomicRanges gtools IRanges preprocessCore Rsamtools rtracklayer]; }; - MEDME = derive2 { name="MEDME"; version="1.30.0"; sha256="0j2zgd9lx3cbbv2vyqb4nd9rk3lxk33az50n8b9sn4cab7yws54x"; depends=[Biostrings drc MASS]; }; - MEIGOR = derive2 { name="MEIGOR"; version="1.4.0"; sha256="1nywi9cndvkabiryrq72vxgrhz9d8jvzjvzhz9i4mx6g8xvphjng"; depends=[CNORode deSolve Rsolnp snowfall]; }; - MGFM = derive2 { name="MGFM"; version="1.4.0"; sha256="1ffmz1cbk0bhswrjkjg1mg3cslmx2k2sxhhggv9s2wavx2s4q3ba"; depends=[annotate AnnotationDbi]; }; - MIMOSA = derive2 { name="MIMOSA"; version="1.8.0"; sha256="1kc7qszpcxp82f56yxa7s1bcs5wblm4ywj5izgdf981qq16d6s2h"; depends=[Biobase coda data_table Formula ggplot2 Kmisc MASS MCMCpack modeest plyr pracma Rcpp RcppArmadillo reshape scales testthat]; }; - MLInterfaces = derive2 { name="MLInterfaces"; version="1.50.0"; sha256="16lf1hmjdmsh9r8qh9042k1rzvl8r39n71f2qs6ca79qcwpb9k6j"; depends=[annotate Biobase BiocGenerics cluster fpc gbm gdata genefilter ggvis hwriter MASS mlbench pls RColorBrewer rda rgl rpart sfsmisc shiny threejs]; }; - MLP = derive2 { name="MLP"; version="1.18.0"; sha256="1g45rnj58bkp7n6paz7713ny0lc6v7lxigqsnvq4w460sg9k060d"; depends=[affy AnnotationDbi gdata gmodels gplots gtools plotrix]; }; - MLSeq = derive2 { name="MLSeq"; version="1.8.1"; sha256="0s324105s96jjasbbf9yri9bdkcwx8siwyg602fyrfkfh0888d3r"; depends=[Biobase caret DESeq2 edgeR limma randomForest]; }; - MMDiff = derive2 { name="MMDiff"; version="1.10.0"; sha256="0v000a87ciw83xj6p2443k1zs1w98ax38nzaf643wqmb8szwr6vf"; depends=[Biobase DiffBind GenomicRanges GMD IRanges Rsamtools]; }; - MPFE = derive2 { name="MPFE"; version="1.6.0"; sha256="1n12bpb8jqddrcpdbbpfxzk4r44kg3p8bg8an5drzbv6rmyhdxwn"; depends=[]; }; - MSGFgui = derive2 { name="MSGFgui"; version="1.4.0"; sha256="0pb9i81pqnz05jrwqh9myz5zchdn8ng5nrsv3cmdg4713yskqpcw"; depends=[MSGFplus mzID mzR shiny shinyFiles xlsx]; }; - MSGFplus = derive2 { name="MSGFplus"; version="1.4.0"; sha256="1hw40kyhkxm0iy60n3y1cw2k52q5vjl47k4z5x34syq5d14iplva"; depends=[mzID]; }; - MSnID = derive2 { name="MSnID"; version="1.4.0"; sha256="1my0kg8wi7f73sgy8brczkdxvjc2mslv3akk69bqw6j0lk1kaqir"; depends=[Biobase data_table doParallel foreach iterators MSnbase mzID ProtGenerics R_cache Rcpp reshape2]; }; - MSnbase = derive2 { name="MSnbase"; version="1.18.1"; sha256="09gv73ykvi6fcaxwclfmg99qbqwkxg8sn5b5nnwlyzin3g11fyq6"; depends=[affy Biobase BiocGenerics BiocParallel digest ggplot2 impute IRanges lattice MALDIquant mzID mzR pcaMethods plyr preprocessCore ProtGenerics Rcpp reshape2 S4Vectors vsn]; }; - MSstats = derive2 { name="MSstats"; version="3.2.1"; sha256="1zyxawn4zzfg6xdk2pawd5qdmfp9r98bvryb5qklbyqn0azakina"; depends=[data_table ggplot2 ggrepel gplots limma lme4 marray MSnbase preprocessCore Rcpp reshape reshape2 survival]; }; - MVCClass = derive2 { name="MVCClass"; version="1.44.0"; sha256="04mk9mp6kfjdbb1i9ivj1f2h5hm3nzhzznyc8w2vcihkf48gl89d"; depends=[]; }; - MantelCorr = derive2 { name="MantelCorr"; version="1.40.0"; sha256="00603yxak0c7pif6acccvzkhp0jsw2n22l7awc2v0za25xjwn3mr"; depends=[]; }; - MassArray = derive2 { name="MassArray"; version="1.22.0"; sha256="0z7na1ylvga5c42s0lh5shr1y316nla8rfd6wc9amkabsprfngqm"; depends=[]; }; - MassSpecWavelet = derive2 { name="MassSpecWavelet"; version="1.36.0"; sha256="0gprvc3fflfxflx0d65sja569lf41rrdlfyggf3b2pvqvd59pyfv"; depends=[waveslim]; }; - MatrixRider = derive2 { name="MatrixRider"; version="1.2.0"; sha256="0ss39c235awrmqbkz3yzjly88dvp79bz4ycdz467rasd45wlvz64"; depends=[Biostrings IRanges S4Vectors TFBSTools XVector]; }; - MeSHDbi = derive2 { name="MeSHDbi"; version="1.6.0"; sha256="19c0llv894mdx52nqf7flz4bpxid5f6nsg535031prqgd2bdslnq"; depends=[AnnotationDbi Biobase BiocGenerics RSQLite]; }; - MeSHSim = derive2 { name="MeSHSim"; version="1.2.0"; sha256="1wgc2s1080sm2dn9ny4c1kpbcmbv4gv91h7jmgya9p8lk224aasr"; depends=[RCurl XML]; }; - MeasurementError_cor = derive2 { name="MeasurementError.cor"; version="1.42.0"; sha256="0x6jlza4ip0zscmmxlmy9w6r6cgpdawpxw00cvyrw4pswzhsaz03"; depends=[]; }; - MergeMaid = derive2 { name="MergeMaid"; version="2.42.0"; sha256="1ajmrcpvzfjk0bkm2v3yklry91w5cxpjhgjr9hfszzldfhh5sfw4"; depends=[Biobase MASS survival]; }; - Metab = derive2 { name="Metab"; version="1.4.1"; sha256="0wi45k7lx7f7y8bfpa4d1lggnkxlwwyjgzw22xyfw9yj40ma5x9g"; depends=[pander svDialogs xcms]; }; - MethTargetedNGS = derive2 { name="MethTargetedNGS"; version="1.2.0"; sha256="1pykrqvblmxwbxwyps3gn2vm6ch6cn9199g6a1fix2dwj26y66yf"; depends=[Biostrings gplots seqinr stringr]; }; - MethylAid = derive2 { name="MethylAid"; version="1.4.0"; sha256="0k8vl8ijgdvci8j1nkq7d4j4naxgsz5wdac5zk093zzjfrq2xmmg"; depends=[Biobase BiocGenerics BiocParallel FDb_InfiniumMethylation_hg19 ggplot2 gridBase hexbin IlluminaHumanMethylation450kmanifest matrixStats minfi RColorBrewer shiny]; }; - MethylMix = derive2 { name="MethylMix"; version="1.4.0"; sha256="17f32y50aywvyhfm60rr7dyjq3y56i4bysdzmin5plqlyq0gmx30"; depends=[doParallel foreach optimx RColorBrewer RPMM]; }; - MethylSeekR = derive2 { name="MethylSeekR"; version="1.10.0"; sha256="0aa3p5qmprka7v6v3alhnag6qr853wvcib9vj0nj803saa34hil8"; depends=[BSgenome geneplotter GenomicRanges IRanges mhsmm rtracklayer]; }; - Mfuzz = derive2 { name="Mfuzz"; version="2.30.0"; sha256="02a3xrsd3nzr278zq8j7s9bq89v30v5yxcdmzcf480n1pqw66ayz"; depends=[Biobase e1071 tkWidgets]; }; - MiChip = derive2 { name="MiChip"; version="1.24.0"; sha256="1jqhmrzi87g3fyfy0xbwcbkh5hhr9b1sa3lp9rxlxrijlxv35mb4"; depends=[Biobase]; }; - MiPP = derive2 { name="MiPP"; version="1.42.0"; sha256="07flpzyr9jj50789ap78an6qygb3y9b87dkaami6aadpphp2ggn0"; depends=[Biobase e1071 MASS]; }; - MiRaGE = derive2 { name="MiRaGE"; version="1.12.0"; sha256="0j8qip9sz4ifk7p6a41258lsw26i92qcrl72h4y43l2bln4r74ng"; depends=[AnnotationDbi Biobase BiocGenerics]; }; - MineICA = derive2 { name="MineICA"; version="1.10.0"; sha256="1vdnc25wbbsdx4z9c8x0asar6a50hzwvlkxrgn10dlm96jihmgdf"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt cluster colorspace fastICA foreach fpc ggplot2 GOstats graph gtools Hmisc igraph JADE lumi lumiHumanAll_db marray mclust plyr RColorBrewer Rgraphviz scales xtable]; }; - MinimumDistance = derive2 { name="MinimumDistance"; version="1.14.0"; sha256="0i3iag5a705q33vxqyb7pqpgmc8whpvy96yvidk2gyfh6lwqjsmn"; depends=[Biobase BiocGenerics data_table DNAcopy ff foreach GenomeInfoDb GenomicRanges IRanges lattice matrixStats oligoClasses S4Vectors SummarizedExperiment VanillaICE]; }; - Mirsynergy = derive2 { name="Mirsynergy"; version="1.6.0"; sha256="0wb257fi5wygky6iqaxdhp8n3pxzknv1vy44ay55y0bal1nbkzwa"; depends=[ggplot2 gridExtra igraph Matrix RColorBrewer reshape scales]; }; - MmPalateMiRNA = derive2 { name="MmPalateMiRNA"; version="1.20.0"; sha256="1salsb4askcv6xgzfwcwxkrr8qx7pjzqgljbw3ips2f4n6vqvyzj"; depends=[Biobase lattice limma statmod vsn xtable]; }; - MoPS = derive2 { name="MoPS"; version="1.4.0"; sha256="07bylvhv1wnzj3z2ycw4rb29mlz34sbpksl0sdk47q9f5cjgvlnf"; depends=[Biobase]; }; - MotIV = derive2 { name="MotIV"; version="1.26.0"; sha256="0s26dklw8kav8lz0245as7y9znj4yfiknpmcgrdmm62rq04c11mp"; depends=[BiocGenerics Biostrings IRanges lattice rGADEM S4Vectors]; }; - MotifDb = derive2 { name="MotifDb"; version="1.12.1"; sha256="0n3kh8k0gbdc571bb45argxwsv6waaalgf9b6rzd3prnizkxzq4q"; depends=[BiocGenerics Biostrings IRanges rtracklayer S4Vectors]; }; - Mulcom = derive2 { name="Mulcom"; version="1.20.0"; sha256="0rf5haxfmf0zs42b9pinngbr4clnm0h707zplmig8dpaq5myski9"; depends=[Biobase fields]; }; - MultiMed = derive2 { name="MultiMed"; version="1.4.0"; sha256="0vd8akfy23rx37b98z9g7x7hz0xjba912kvkwcd9m0k6fv4n2s5g"; depends=[]; }; - NCIgraph = derive2 { name="NCIgraph"; version="1.18.0"; sha256="0ip8ds4jafb7nhfbz81gs9fl83a6b88di1z3nmkh31aqd4awrgim"; depends=[graph KEGGgraph R_methodsS3 RBGL RCytoscape]; }; - NGScopy = derive2 { name="NGScopy"; version="1.4.0"; sha256="1vs7mi0lb8jcm9yc0jz7rvdnj95fr06cf1jkb9p84pnm9vpn63d6"; depends=[changepoint rbamtools Xmisc]; }; - NOISeq = derive2 { name="NOISeq"; version="2.14.1"; sha256="1z8ka9rbs6q267g3cjmgvdvp5ramk3dnlwry46wswifqihalhf9p"; depends=[Biobase Matrix]; }; - NTW = derive2 { name="NTW"; version="1.20.0"; sha256="1p9hhjzh1mq907czbnjp7gg6n8ip4hzcq7x46bmmxpibi3wy64vp"; depends=[mvtnorm]; }; - NanoStringDiff = derive2 { name="NanoStringDiff"; version="1.0.0"; sha256="11mdy4ms3fvia04njjxj35p1kgbl3i2wzgplzl42yymm61xgcar2"; depends=[Biobase matrixStats]; }; - NanoStringQCPro = derive2 { name="NanoStringQCPro"; version="1.2.0"; sha256="1cbja0bi4sw3n4f1wkgbvmwh1hr49hhrybqxc6a7f8lvq11s28rf"; depends=[AnnotationDbi Biobase knitr NMF org_Hs_eg_db png RColorBrewer]; }; - NarrowPeaks = derive2 { name="NarrowPeaks"; version="1.14.0"; sha256="08nhw2ira3amjs9zl134afjqwi0hniq0g3mgmljjp1l0277b8acg"; depends=[BiocGenerics CSAR fda GenomeInfoDb GenomicRanges ICSNP IRanges S4Vectors]; }; - NetPathMiner = derive2 { name="NetPathMiner"; version="1.6.0"; sha256="0rvar97f22n2afy185521wqh2scmzgw5fj2pv5dzydn0ybfnpn3j"; depends=[igraph]; }; - NetSAM = derive2 { name="NetSAM"; version="1.10.0"; sha256="001jdmc1qb2gcwkfy98az66b52hcp0cqvjqp0yzj598523983v5i"; depends=[graph igraph seriation]; }; - NormqPCR = derive2 { name="NormqPCR"; version="1.16.0"; sha256="16mm6b656gamvlr3gj5l7957h5fvzz221vggfjvab92khp3p8c16"; depends=[Biobase qpcR RColorBrewer ReadqPCR]; }; - NuPoP = derive2 { name="NuPoP"; version="1.20.0"; sha256="0wy63x8jdlldb8f28csm611fx7sahvkz1g0gcslp4babsm3368y6"; depends=[]; }; - OCplus = derive2 { name="OCplus"; version="1.44.0"; sha256="05v5fdcgkigisrpfyka8k7caz739ys1ycy8lljqj6ivq94gmi44m"; depends=[akima multtest]; }; - OGSA = derive2 { name="OGSA"; version="1.0.0"; sha256="058lfd60w905jvhq99dsdcvl1q6h9dnwhqdqn942yr54jlkc7fjy"; depends=[Biobase gplots limma]; }; - OLIN = derive2 { name="OLIN"; version="1.48.0"; sha256="1qqvxl8xw02xawxgb82fnxjkss5cy813li4vp7wc70srcxyd1j63"; depends=[limma locfit marray]; }; - OLINgui = derive2 { name="OLINgui"; version="1.44.0"; sha256="0477llp7g2bs7h4756qildpscllk5wdk303gkaaiv5ap6n8s8smj"; depends=[marray OLIN tkWidgets widgetTools]; }; - OSAT = derive2 { name="OSAT"; version="1.18.0"; sha256="063jpwmhsnhi7al88mwcgbnd9azn2z3afxnjd2syf0mv156v86j0"; depends=[]; }; - OTUbase = derive2 { name="OTUbase"; version="1.20.0"; sha256="0h9fgnc0saz8gsx6wgjigs4aiacbw03vzzxfc04wzfcdjgcm731p"; depends=[Biobase Biostrings IRanges S4Vectors ShortRead vegan]; }; - OmicCircos = derive2 { name="OmicCircos"; version="1.8.1"; sha256="1xmf4wbij8lczj8jp1vj546gzv6210qcx30dpf4f3zqy083d583v"; depends=[GenomicRanges]; }; - OmicsMarkeR = derive2 { name="OmicsMarkeR"; version="1.2.0"; sha256="1r4qn2p5fxyi6r9l7zgbga1n5wcy18whcvyx0cwrr7lawbzjn6yg"; depends=[assertive assertive_base caret caTools data_table DiscriMiner e1071 foreach gbm glmnet pamr permute plyr randomForest]; }; - OncoSimulR = derive2 { name="OncoSimulR"; version="2.0.0"; sha256="1q2kwszqf1ki8whchbx537sv6gah4ibclabhkgycd183rd0jv71r"; depends=[data_table graph gtools igraph Rcpp Rgraphviz]; }; - OperaMate = derive2 { name="OperaMate"; version="1.2.3"; sha256="1zgqf2ywazrxc66l2x8280izrzanan51b8vz5jwy8i7gnrm4gaa0"; depends=[fBasics ggplot2 gProfileR gridExtra pheatmap reshape2 stabledist]; }; - OrderedList = derive2 { name="OrderedList"; version="1.42.0"; sha256="0jk753xfyksv3vcgxd3z7nwh9cnjfdljzma4vc7kkdsblx5mpjyi"; depends=[Biobase twilight]; }; - OrganismDbi = derive2 { name="OrganismDbi"; version="1.12.1"; sha256="1rda35kjh3l5w5dz153x4p6adwm8apkljg5021a1rcs2x58q6z91"; depends=[AnnotationDbi Biobase BiocGenerics BiocInstaller GenomicFeatures GenomicRanges graph IRanges RBGL RSQLite S4Vectors]; }; - Oscope = derive2 { name="Oscope"; version="1.0.0"; sha256="08gyfjkimv8fj54kfnalpy1v72sv8vr0pjxyj52sb0hh0xcj2jqk"; depends=[BiocParallel cluster EBSeq testthat]; }; - OutlierD = derive2 { name="OutlierD"; version="1.34.0"; sha256="19wrakxv833r5jqcrk627kgn6pissna9xdfnhn389a0j50xb02is"; depends=[Biobase quantreg]; }; - PAA = derive2 { name="PAA"; version="1.4.1"; sha256="1g1yv95p9i58c4w3nsg490mn4c5qh4q4lfx1jj1ff7h3w7i6ds9d"; depends=[e1071 gplots limma MASS mRMRe randomForest Rcpp ROCR sva]; }; - PADOG = derive2 { name="PADOG"; version="1.12.0"; sha256="0qswjj0iskdinap0mdgh1vpsjx80hs5g1ikm7r3yrz3784577ji8"; depends=[AnnotationDbi Biobase doRNG foreach GSA hgu133a_db hgu133plus2_db KEGG_db KEGGdzPathwaysGEO limma nlme]; }; - PANR = derive2 { name="PANR"; version="1.16.0"; sha256="19q7vxhq2kazjf3wxvzl0cvfyd49b00r0daf7vgzjv1smjq1czhq"; depends=[igraph MASS pvclust RedeR]; }; - PAPi = derive2 { name="PAPi"; version="1.10.0"; sha256="0q90yi4s3jln713cpylgan7fzw7c536kw7bqlnkkaw6rjj1k6vvg"; depends=[KEGGREST svDialogs]; }; - PAnnBuilder = derive2 { name="PAnnBuilder"; version="1.34.0"; sha256="086hgqx9svn1pfzcz6affj2p9kvjk5k4viqkmwknlk9smw53l40l"; depends=[AnnotationDbi Biobase DBI RSQLite]; }; - PCpheno = derive2 { name="PCpheno"; version="1.32.0"; sha256="023dkbi3r1bs9wiihx3rcdc1dx5w21pfmk0n3n7zan4k5jkz4rwx"; depends=[annotate AnnotationDbi Biobase Category GO_db graph GSEABase KEGG_db ppiData ppiStats ScISI SLGI]; }; - PECA = derive2 { name="PECA"; version="1.6.0"; sha256="00arj7ni6vdhsa3j9dvid997hqzw3kbznxgsfrjcda68gl28v8m0"; depends=[affy aroma_affymetrix aroma_core genefilter limma preprocessCore]; }; - PGA = derive2 { name="PGA"; version="1.0.0"; sha256="1s4ddjlnxh1waw1sm428lnaq655qfzlmabcjgdm95fi2cg66vs86"; depends=[AnnotationDbi biomaRt Biostrings customProDB data_table GenomicFeatures GenomicRanges ggplot2 IRanges Nozzle_R1 pheatmap RCurl Rsamtools RSQLite rTANDEM rtracklayer stringr VariantAnnotation]; }; - PGSEA = derive2 { name="PGSEA"; version="1.44.0"; sha256="0cfz479nlmbal4bs5ah12q6jpp7989xic59rml87i19bcbhz8z26"; depends=[annaffy AnnotationDbi Biobase GO_db KEGG_db]; }; - PICS = derive2 { name="PICS"; version="2.14.0"; sha256="01pc4nayj4iyrm18clb66f6f1a7y2w56l2z976xca86fhv6qgp4x"; depends=[BiocGenerics GenomicAlignments GenomicRanges IRanges Rsamtools S4Vectors]; }; - PING = derive2 { name="PING"; version="2.14.0"; sha256="0gpc9x9qn1m1rqdls54yfqlph84937fb3f5mf89yi6zcjh41yhlb"; depends=[BiocGenerics BSgenome chipseq fda GenomicRanges Gviz IRanges PICS S4Vectors]; }; - PLPE = derive2 { name="PLPE"; version="1.30.0"; sha256="0j6x0c7aigq5n2qwvn0bzcbzi8xqi9szbqfk58jr7ppgaxl1ljyw"; depends=[Biobase LPE MASS]; }; - PREDA = derive2 { name="PREDA"; version="1.16.0"; sha256="050a1a02ck11yklmd104b2hnal9q8g171nyq0qd1v1i2mhg02jyn"; depends=[annotate Biobase lokern multtest]; }; - PROMISE = derive2 { name="PROMISE"; version="1.22.0"; sha256="12virpc3m8ikwkz600bfg1aycxxks6g8km6gd7y01yyxybsqjplq"; depends=[Biobase GSEABase]; }; - PROPER = derive2 { name="PROPER"; version="1.2.0"; sha256="1xhq14wpd9j9g0zzb99mib46miciw6dhp4gvkpdvlfwhh3j8m8fb"; depends=[edgeR]; }; - PROcess = derive2 { name="PROcess"; version="1.46.0"; sha256="0ysp2f2kx5p701ww81ip8n4617qs6rcjfrj62657j143ajz27py3"; depends=[Icens]; }; - PSEA = derive2 { name="PSEA"; version="1.4.0"; sha256="1df2v472s2g4qcylvg9y5gahgjzq0m753j65736c8lc7g2zbpacp"; depends=[Biobase MASS]; }; - PSICQUIC = derive2 { name="PSICQUIC"; version="1.8.3"; sha256="1g3xkbgr3by0gd8ngiavxyy14ixdhrwcf5ka329k3129d816425p"; depends=[BiocGenerics biomaRt httr IRanges plyr RCurl]; }; - PWMEnrich = derive2 { name="PWMEnrich"; version="4.6.0"; sha256="0gvnky8k6v518g2a4lrvb5w7s1m3icckmlvyxcbvxdfyb5krdzh2"; depends=[BiocGenerics Biostrings evd gdata seqLogo]; }; - Path2PPI = derive2 { name="Path2PPI"; version="1.0.0"; sha256="15cf7r1aswc1agdkc7k8dbazscqnyrbfg68ms248gri3qrplkq0k"; depends=[igraph]; }; - PathNet = derive2 { name="PathNet"; version="1.10.0"; sha256="07b6c8ry6a0ni8c88wccv69ksk5c6w3wwwp6cl3gcm7kv7r2qd00"; depends=[]; }; - Pbase = derive2 { name="Pbase"; version="0.10.0"; sha256="02b2vw63gwssy6bz8v6dvfmz2ak5pa7wzz341nrbr3mwv0k27j4q"; depends=[Biobase BiocGenerics biomaRt Biostrings cleaver GenomicRanges Gviz IRanges MSnbase mzID mzR Pviz Rcpp rtracklayer S4Vectors]; }; - PhenStat = derive2 { name="PhenStat"; version="2.4.0"; sha256="02x8502j7c8jb9xpy01dlr89qwhlakzvn7rhl4mb8qd37lrvc3kf"; depends=[car logistf MASS nlme nortest]; }; - Polyfit = derive2 { name="Polyfit"; version="1.4.0"; sha256="0rhs81hclz59nqirpp9y5n7qmg343s260n1gv8ma3c8j2jicb333"; depends=[DESeq]; }; - Prize = derive2 { name="Prize"; version="1.0.0"; sha256="1a9hvhpa29ns7lhzmdqjlasp6rwrzng8klaw9cz54vdvc7al49wn"; depends=[diagram ggplot2 gplots matrixcalc reshape2 stringr]; }; - ProCoNA = derive2 { name="ProCoNA"; version="1.8.0"; sha256="0j0ld484cd98304fncyixi86qnxh72m8s83xxyk8c81kf7lzvhw1"; depends=[BiocGenerics flashClust GOstats MSnbase WGCNA]; }; - Prostar = derive2 { name="Prostar"; version="1.0.1"; sha256="1rnbx41f07c9y6ba7p9lb6wi22kf3w5jg8h8di3grfgyq4dw3n39"; depends=[DAPAR data_table quantmod rhandsontable shiny shinyTree]; }; - ProtGenerics = derive2 { name="ProtGenerics"; version="1.2.1"; sha256="1hrds64ijygmilig3l99aj5cqqp8cr74x1jfs5qfw9xkma0ggz3r"; depends=[BiocGenerics]; }; - ProteomicsAnnotationHubData = derive2 { name="ProteomicsAnnotationHubData"; version="1.0.0"; sha256="1ss1kamy3djmxvr838bkh6jd93br8hql9a3aanqml7fzz3pvdq1p"; depends=[AnnotationHub AnnotationHubData Biobase BiocInstaller Biostrings GenomeInfoDb MSnbase mzR]; }; - Pviz = derive2 { name="Pviz"; version="1.4.0"; sha256="02p4l8svrmh0jh1xlgngbdc0h96m2jw15x1ld05p23acj44sacgh"; depends=[Biostrings biovizBase data_table GenomicRanges Gviz IRanges]; }; - QDNAseq = derive2 { name="QDNAseq"; version="1.6.1"; sha256="1jbnmvf3i4kimk7s558sbvkb0l6gb8hsbfvxdw93sfk4dwsi5c12"; depends=[Biobase CGHbase CGHcall DNAcopy matrixStats R_utils Rsamtools]; }; - QUALIFIER = derive2 { name="QUALIFIER"; version="1.14.1"; sha256="1h87y2q8x4ri6sv7nbppzpqa96m99mijq1739h8cfab5wmi0bcl5"; depends=[Biobase data_table flowCore flowViz flowWorkspace hwriter lattice latticeExtra MASS ncdfFlow reshape XML]; }; - QuartPAC = derive2 { name="QuartPAC"; version="1.2.0"; sha256="0nx3a9jsp2rq61jszm6kgpbqi9m5jkqfvk94npp7nk3qwhfi00j8"; depends=[data_table GraphPAC iPAC SpacePAC]; }; - QuasR = derive2 { name="QuasR"; version="1.10.1"; sha256="1sdk1kh8365bp8w8xl06lhqdw0kprqj4gvwhw46lyiw1r3xapqd5"; depends=[Biobase BiocGenerics BiocInstaller BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges IRanges Rbowtie Rsamtools rtracklayer S4Vectors ShortRead zlibbioc]; }; - R3CPET = derive2 { name="R3CPET"; version="1.2.0"; sha256="10ps9l6cc61m32a5b0b0y51sf8ci8drrpk02781p3i23jyamx8gz"; depends=[clues clValid data_table GenomicRanges ggbio ggplot2 Hmisc igraph IRanges pheatmap Rcpp RCurl reshape2 S4Vectors]; }; - R453Plus1Toolbox = derive2 { name="R453Plus1Toolbox"; version="1.20.0"; sha256="118gdmlqgy6nn55vq7nvyqvlwbg2vca7fkw0gjvb63ymv8lhfm7p"; depends=[Biobase BiocGenerics biomaRt Biostrings BSgenome GenomicRanges IRanges R2HTML Rsamtools S4Vectors ShortRead SummarizedExperiment TeachingDemos VariantAnnotation xtable XVector]; }; - RBGL = derive2 { name="RBGL"; version="1.46.0"; sha256="1zl2cvzhrm01hkqvzqrf37bnh0snm49594lk6ydiafn3s31rhk6f"; depends=[graph]; }; - RBM = derive2 { name="RBM"; version="1.2.0"; sha256="148is7ddwj8siik6a6svghnyl3ix8yf6ywnp90fxb8x0c5yknvmm"; depends=[limma marray]; }; - RBioinf = derive2 { name="RBioinf"; version="1.30.0"; sha256="038xqmbsajkcj5s0pjv0jb9lizq555kxabxjj3pgipjbqfjbj0xg"; depends=[graph]; }; - RCASPAR = derive2 { name="RCASPAR"; version="1.16.0"; sha256="0rliirdsd89lzr4ych9r7x90d4nzz1p036cmj8k01lzs6nvckh05"; depends=[]; }; - RCy3 = derive2 { name="RCy3"; version="1.0.1"; sha256="0bqn2k7k1007ih48inmdjnl0pan2q86p9p4c8hkbgv6r2alxc0d1"; depends=[graph httr RCurl RJSONIO]; }; - RCyjs = derive2 { name="RCyjs"; version="1.2.3"; sha256="1z3a80j9wcr2jsv35chqqqc95dcjsmz48hylvc432p2jwy572phn"; depends=[BiocGenerics BrowserViz graph httpuv igraph jsonlite Rcpp]; }; - RCytoscape = derive2 { name="RCytoscape"; version="1.20.1"; sha256="1ymbj8xlny9bsbcxyvg9si7v2rlc7bw3sq0424bsfc92l3as0rjj"; depends=[BiocGenerics graph]; }; - RDAVIDWebService = derive2 { name="RDAVIDWebService"; version="1.8.0"; sha256="1f92a80zksp90wlj2iymdf20hqkbp1aw7mdb7w5r19zckskcrg1m"; depends=[Category ggplot2 GO_db GOstats graph RBGL rJava]; }; - RDRToolbox = derive2 { name="RDRToolbox"; version="1.20.0"; sha256="1an5sz2lcq9n0h0i8s6g9jqaskbi7drwib8a1zwlpim1f399h45d"; depends=[MASS rgl]; }; - REDseq = derive2 { name="REDseq"; version="1.16.0"; sha256="13lglqabk3ij37i469s40gagb57z7mqcmdwahvf60rrgxvhbxkwz"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome BSgenome_Celegans_UCSC_ce2 ChIPpeakAnno IRanges multtest]; }; - RGSEA = derive2 { name="RGSEA"; version="1.4.0"; sha256="1dqw1vppxsr14sr94sz4ca2vacky70r0ingkq8cghsbvwp73i6vp"; depends=[BiocGenerics]; }; - RGalaxy = derive2 { name="RGalaxy"; version="1.14.0"; sha256="1g63kmfywmnjammifjkqiy8cnqvb77d2x4yff8bgz2ib60gyqm14"; depends=[Biobase BiocGenerics digest optparse roxygen2 XML]; }; - RIPSeeker = derive2 { name="RIPSeeker"; version="1.10.0"; sha256="09pr25pf488vdim3k6mvbvqqyxhl2dfs4y699x8xyhym34c74xcj"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer SummarizedExperiment]; }; - RLMM = derive2 { name="RLMM"; version="1.32.0"; sha256="15hkzfsr3qpyd72m5bf208ivcki1dkk5qigz6dxshqy803ax60ca"; depends=[MASS]; }; - RMassBank = derive2 { name="RMassBank"; version="1.12.0"; sha256="1rsvdai5fhkx9pgj14mm2x1xr4h8l0ppakxp8j3aicih92cvdd55"; depends=[mzR rcdk Rcpp RCurl rjson XML yaml]; }; - RNASeqPower = derive2 { name="RNASeqPower"; version="1.10.0"; sha256="16nhhmww8awf5rp6j8hrmz9riw4gppmvd4a2vlp57sr6y82krlsz"; depends=[]; }; - RNAinteract = derive2 { name="RNAinteract"; version="1.18.0"; sha256="0v7hz20nsc2dkb4xjzdhib2rj8k9zkn2c71rhg46b6hy3jxrm7m1"; depends=[abind Biobase cellHTS2 geneplotter gplots hwriter ICS ICSNP lattice latticeExtra limma locfit RColorBrewer splots]; }; - RNAither = derive2 { name="RNAither"; version="2.18.4"; sha256="15kr629g5l6isa4069fibgdh9j5zkmjll5anpigfbmdb85dhwlbc"; depends=[biomaRt car geneplotter limma prada RankProd splots topGO]; }; - RNAprobR = derive2 { name="RNAprobR"; version="1.2.0"; sha256="017sc7ba5kw55rc74acv3i5i0mg7h5hblaqxy4j2ln6iqm1h38fi"; depends=[BiocGenerics Biostrings GenomicAlignments GenomicFeatures GenomicRanges plyr Rsamtools rtracklayer]; }; - ROC = derive2 { name="ROC"; version="1.46.0"; sha256="15m52d3z10nrzh7slc6b7js1dybh0dg4pd6nnjbjkc2m5axra09g"; depends=[]; }; - ROntoTools = derive2 { name="ROntoTools"; version="1.10.0"; sha256="0bsab4glgazf3x2rg96shks4vqkarqpls71699q7v7zaw7ay7hra"; depends=[boot graph KEGGgraph KEGGREST Rgraphviz]; }; - RPA = derive2 { name="RPA"; version="1.26.0"; sha256="09mjbxxx2ggf3c3v8d2wxvgpp14fmhp7yv9w1vxdj4kbzpdagpz0"; depends=[affy]; }; - RRHO = derive2 { name="RRHO"; version="1.10.0"; sha256="11iarlljr6lrq6nf36pdxf7p54mk6xwsz8ssfsg8zmpcpvb8adgc"; depends=[VennDiagram]; }; - RSVSim = derive2 { name="RSVSim"; version="1.10.0"; sha256="1ipzsgm7p2xf8v3asc6gcwvl6gnrn8nkg45iyl948kgys9izrng3"; depends=[Biostrings GenomicRanges IRanges ShortRead]; }; - RTCA = derive2 { name="RTCA"; version="1.22.0"; sha256="1rwgrac92n7ghk417sj3p80ahlnn8c9nq8af999a825bjbi90qd5"; depends=[Biobase gtools RColorBrewer]; }; - RTCGA = derive2 { name="RTCGA"; version="1.0.2"; sha256="14lxdzrii9xvpjvflqim2kasx2xd5pk9rijpad2pkm8yq5cs662p"; depends=[assertthat data_table knitr magrittr rvest stringi XML xml2]; }; - RTCGAToolbox = derive2 { name="RTCGAToolbox"; version="2.0.0"; sha256="0bwdh52qsl2bawr8s4q92mrx1wn4yyc4qbag97w469ixlsr7fcx2"; depends=[data_table limma RCircos RCurl RJSONIO survival XML]; }; - RTN = derive2 { name="RTN"; version="1.8.4"; sha256="17znp5k4jrxnl3iq5mlljkjzm5lhi5a5pw06gkd081zs6bwhi9v3"; depends=[car data_table ff igraph IRanges limma minet RedeR snow]; }; - RTopper = derive2 { name="RTopper"; version="1.16.0"; sha256="0ikhlz9fa21ij9ikira4grc6fahjd8n2fwsdgkxr058zlzyw0c7b"; depends=[Biobase limma multtest]; }; - RUVSeq = derive2 { name="RUVSeq"; version="1.4.0"; sha256="0xqma406k3sd47r830jc00al2xmx3wmfg5q0zk3b29bxiklj5w4f"; depends=[Biobase EDASeq edgeR MASS]; }; - RUVcorr = derive2 { name="RUVcorr"; version="1.2.0"; sha256="1iaja7xcmih63vp9g4km8yx2rrafkybp3azrxw5i28sv1hl7187j"; depends=[BiocParallel bladderbatch corrplot gridExtra lattice MASS psych reshape2 snowfall]; }; - RUVnormalize = derive2 { name="RUVnormalize"; version="1.4.1"; sha256="13ksgz1givgy3ws97xa1x8v96ikpia5s9675l3xkz1fzsm3wmbzi"; depends=[Biobase RUVnormalizeData]; }; - RWebServices = derive2 { name="RWebServices"; version="1.34.0"; sha256="05czankzfvgsfrs2am8dkglzcix22s7gc4bgci0a66x8z31dlkx0"; depends=[RCurl SJava TypeInfo]; }; - RamiGO = derive2 { name="RamiGO"; version="1.16.0"; sha256="12mwfcljw323aqpzc4z5hl2h5qy51bpi5z59x4hx8inw3vc3n55y"; depends=[graph gsubfn igraph png RCurl RCytoscape]; }; - RankProd = derive2 { name="RankProd"; version="2.42.0"; sha256="0ma0mmj335v04bx96wssas81hx9apv6gv9y54cgac4n6v1ci9a9y"; depends=[]; }; - RareVariantVis = derive2 { name="RareVariantVis"; version="1.2.0"; sha256="1azfhbb9hpahpglwal4qd8c91zkjhda42ljn2jjd8ylvl4mgzv96"; depends=[BiocGenerics GenomeInfoDb GenomicRanges googleVis IRanges S4Vectors VariantAnnotation]; }; - Rariant = derive2 { name="Rariant"; version="1.6.1"; sha256="00q303w8gmp7p8s0k10l6w524d1yjjxhwckgg7g34hgvak75dqdg"; depends=[dplyr exomeCopy GenomeInfoDb GenomicRanges ggbio ggplot2 IRanges reshape2 Rsamtools S4Vectors shiny SomaticSignatures VariantAnnotation VGAM]; }; - RbcBook1 = derive2 { name="RbcBook1"; version="1.38.0"; sha256="1pg6bg2q9whz4g0483ll3l71w7jiy68xd8l71vgr8zy0nip1kmg1"; depends=[Biobase graph rpart]; }; - Rbowtie = derive2 { name="Rbowtie"; version="1.10.0"; sha256="1pdkircilkk9cnb556jmmany1c1xjg29blrs0knribzn6h6bm76s"; depends=[]; }; - Rcade = derive2 { name="Rcade"; version="1.12.0"; sha256="08q62agkyb810b0hfvs9vb9rh0ls8zrz83558xprijjizrkg9cg2"; depends=[baySeq GenomicRanges plotrix rgl Rsamtools S4Vectors]; }; - Rchemcpp = derive2 { name="Rchemcpp"; version="2.8.0"; sha256="0zz9s3zvxgs6mpiq085zy20sqajyx1645cz3848h2l0w1w5m6lga"; depends=[ChemmineR Rcpp]; }; - RchyOptimyx = derive2 { name="RchyOptimyx"; version="2.10.0"; sha256="0cmyjyr3dn8df9ss4zhhm6y1lhf68msl5br070x01i8kgh4dagky"; depends=[flowType graph Rgraphviz sfsmisc]; }; - Rcpi = derive2 { name="Rcpi"; version="1.6.0"; sha256="19h9zxkb4zw9c46fvd0yn7bzy03a73glc4yyla0fzrngk1vs2s5q"; depends=[Biostrings ChemmineR doParallel fmcsR foreach GOSemSim rcdk RCurl rjson]; }; - Rdisop = derive2 { name="Rdisop"; version="1.30.0"; sha256="0v9dm982y2f6gd4lxr2c123a4ijsa8sbn6mkcchwlli8hbxxvpcf"; depends=[Rcpp RcppClassic]; }; - ReQON = derive2 { name="ReQON"; version="1.16.0"; sha256="1j79vmhk34argysbjyxcsmfjsplkxq4cn8gprm6min1v08xzryg0"; depends=[rJava Rsamtools seqbias]; }; - ReactomePA = derive2 { name="ReactomePA"; version="1.14.4"; sha256="1dywrigxh29i50k607fi4p33dxjw2dlm5q86i0400l99lp0xj0di"; depends=[AnnotationDbi DOSE graphite igraph reactome_db]; }; - ReadqPCR = derive2 { name="ReadqPCR"; version="1.16.0"; sha256="04d3gam21cia44w7wz1ai8a60igsbjslac25rb7z5i9ijbx8jk9q"; depends=[affy Biobase]; }; - RedeR = derive2 { name="RedeR"; version="1.18.1"; sha256="0arhg8zav0h3ivinnyl6b4z85b4l3w9vlzxiixnwzdmnr2ch78dc"; depends=[igraph pvclust RCurl XML]; }; - RefNet = derive2 { name="RefNet"; version="1.6.1"; sha256="0l0krjjk1jld7z5zy6k3z6m2qkqd86yj92xfck75q3bq3jm96h0j"; depends=[AnnotationHub BiocGenerics IRanges PSICQUIC RCurl shiny]; }; - RefPlus = derive2 { name="RefPlus"; version="1.40.0"; sha256="13qlm4smaafx1x78wn959wc1rm4wns7l6qgdmh1lg5khkrrh3x19"; depends=[affy affyPLM Biobase preprocessCore]; }; - Repitools = derive2 { name="Repitools"; version="1.16.0"; sha256="1jsimbrnfzvdydb4s6zvimj58gpxyydyngq2dflacg1gd7msq66a"; depends=[aroma_affymetrix BiocGenerics Biostrings BSgenome cluster DNAcopy edgeR GenomeInfoDb GenomicAlignments GenomicRanges gplots gsmoothr IRanges MASS Ringo Rsamtools Rsolnp rtracklayer S4Vectors]; }; - ReportingTools = derive2 { name="ReportingTools"; version="2.10.0"; sha256="1zlxr7z7c3vlkbmpcmw88a9caaf1gwhh8jv31fg2njy60vysb0m0"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category DESeq2 edgeR ggbio ggplot2 GOstats GSEABase hwriter IRanges knitr lattice limma PFAM_db R_utils XML]; }; - Rgraphviz = derive2 { name="Rgraphviz"; version="2.14.0"; sha256="0lwg57kja3r7ij1d3yp5g3r0zbzn2nannlvsh029sd626yfp6fb6"; depends=[graph]; }; - Rhtslib = derive2 { name="Rhtslib"; version="1.2.1"; sha256="0x7x8sbzjxssnnfa43kh38nlkqz6qvj41xdbgniyp7b6kyyr0na4"; depends=[zlibbioc]; }; - RiboProfiling = derive2 { name="RiboProfiling"; version="1.0.3"; sha256="096lpmrdwbsw71k4qdx9d0zgs83r0ixphkg60p40vgvpmhq1c3dh"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr reshape Rsamtools rtracklayer S4Vectors]; }; - Ringo = derive2 { name="Ringo"; version="1.34.0"; sha256="0r549n840sq9whaz8nk7rz3wardxc8jvwdni4bd5f7zzrhj0ynhl"; depends=[Biobase BiocGenerics genefilter lattice limma Matrix RColorBrewer vsn]; }; - Risa = derive2 { name="Risa"; version="1.12.0"; sha256="0s23fbdk1v1cg0c67vhkz53wava1swjig8fz8jsv8av0pqb0rg17"; depends=[affy Biobase biocViews Rcpp xcms]; }; - Rmagpie = derive2 { name="Rmagpie"; version="1.26.0"; sha256="1iwiy8d5cvrmk6jgwaplx980gzdgxp9k53zjwmzya8bar7386sgs"; depends=[Biobase e1071 kernlab pamr]; }; - RmiR = derive2 { name="RmiR"; version="1.26.0"; sha256="1nnpr5jp5anbqbgyg53qqjhi49bibymc0l3yj6ar5d6csavrympb"; depends=[DBI RmiR_Hs_miRNA RSVGTipsDevice]; }; - RnBeads = derive2 { name="RnBeads"; version="1.2.2"; sha256="1nn64lqnzvvlms8m0i3rn5mrp12xxjra8wssabbbnbdg60a1g7i1"; depends=[BiocGenerics cluster ff fields GenomicRanges ggplot2 gplots gridExtra illuminaio IRanges limma MASS matrixStats methylumi plyr RColorBrewer]; }; - RnaSeqSampleSize = derive2 { name="RnaSeqSampleSize"; version="1.2.0"; sha256="11zkq3i8pn9qfs8qynnrlfmr9fdnmqayqmgxzw54fzpj62b0y894"; depends=[biomaRt edgeR heatmap3 KEGGREST matlab Rcpp RnaSeqSampleSizeData]; }; - Rnits = derive2 { name="Rnits"; version="1.4.0"; sha256="0igqimvync5sz1hsn3m9ijivw1vxi8vjpsdcjzf9dkyqhkand6r3"; depends=[affy Biobase boot ggplot2 impute limma qvalue reshape2]; }; - Roleswitch = derive2 { name="Roleswitch"; version="1.8.0"; sha256="0libkpp9scrbakhzp030bx86f4np6ijn01r8xzn02f5106h23gz7"; depends=[Biobase biomaRt Biostrings DBI microRNA plotrix pracma reshape]; }; - Rolexa = derive2 { name="Rolexa"; version="1.26.0"; sha256="184v27zycmqnj4fpjgrxl3vcxxfxwkbfqdzm6wsyxixm93rmz7v4"; depends=[Biostrings IRanges mclust ShortRead]; }; - RpsiXML = derive2 { name="RpsiXML"; version="2.12.0"; sha256="0zlcr1f5sf98bwxakbmq33kniwlpxcc32z5fz7vqsasyv5vbz1ks"; depends=[annotate AnnotationDbi Biobase graph hypergraph RBGL XML]; }; - Rqc = derive2 { name="Rqc"; version="1.4.2"; sha256="0kmp69c2hinfh5bn8ka5rsd4fl14gh4xjj24gw5kasjfbhy5l90x"; depends=[BiocGenerics BiocParallel BiocStyle Biostrings biovizBase digest GenomicAlignments GenomicFiles ggplot2 IRanges knitr markdown plyr Rcpp reshape2 Rsamtools S4Vectors shiny ShortRead]; }; - Rsamtools = derive2 { name="Rsamtools"; version="1.22.0"; sha256="1yc3nzzms3igjwr4l9yd3wdac95glcs08b4cfp7disyly0wcskjd"; depends=[BiocGenerics BiocParallel Biostrings bitops GenomeInfoDb GenomicRanges IRanges S4Vectors XVector zlibbioc]; }; - Rsubread = derive2 { name="Rsubread"; version="1.20.3"; sha256="0i0dns4392cflajx58x3wy8m6fbh4pb6vyiliisws1cxdq3yilk4"; depends=[]; }; - Rtreemix = derive2 { name="Rtreemix"; version="1.32.0"; sha256="0snj644rc6cyjcswckz88fihd6ynjq3sj7qf733vbvqj8d12dqk8"; depends=[Biobase graph Hmisc]; }; - S4Vectors = derive2 { name="S4Vectors"; version="0.8.11"; sha256="12iibcs63m9iy7f45wgjcqsna2dnqwckphk682389grshz0g4x66"; depends=[BiocGenerics]; }; - SAGx = derive2 { name="SAGx"; version="1.44.0"; sha256="0rrw1y80ybpskwvcdbyqq8m4d17sz07bv9gpa27rvfq2sy4znsk6"; depends=[Biobase multtest]; }; - SANTA = derive2 { name="SANTA"; version="2.8.0"; sha256="1dlc6m8lq9cyvxqrp0gnrfx1ksfl5p2hvgl5n67sag3z40vdhflc"; depends=[igraph Matrix snow]; }; - SBMLR = derive2 { name="SBMLR"; version="1.66.0"; sha256="0xa9s382nd8gpkx2lp02iarjqqs2w4qp6xzg9sy654yg4iyjmnms"; depends=[deSolve XML]; }; - SCAN_UPC = derive2 { name="SCAN.UPC"; version="2.12.1"; sha256="0z5qp738xwwnsiv5bygfyljxld0vw805xl3plh5wrwy9gsxn2c7v"; depends=[affy affyio Biobase Biostrings foreach GEOquery IRanges MASS oligo sva]; }; - SELEX = derive2 { name="SELEX"; version="1.2.0"; sha256="019142j9x7p38mi3wvzxm138s9cmq8ljkb5i5lk5pj1z8cc3ci0d"; depends=[Biostrings rJava]; }; - SEPA = derive2 { name="SEPA"; version="1.0.0"; sha256="1hvkz3pyp8qkq1mjw9wl426db6n3ay05bx2djkdpvpbai4fjwgvc"; depends=[ggplot2 org_Hs_eg_db org_Mm_eg_db reshape2 segmented shiny topGO]; }; - SGSeq = derive2 { name="SGSeq"; version="1.4.3"; sha256="09x0mw1xil0p3742w031ljrh5ywr1axsakw7j6300v98j87l2ymv"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges igraph IRanges Rsamtools rtracklayer RUnit S4Vectors SummarizedExperiment]; }; - SICtools = derive2 { name="SICtools"; version="1.0.0"; sha256="16yzykl4s1b2nkgarxsrgvk6cvjdfla3x3ijjn1yxj22wjdzfg9m"; depends=[Biostrings doMC foreach GenomicRanges IRanges matrixStats Rsamtools stringr]; }; - SIM = derive2 { name="SIM"; version="1.40.0"; sha256="02v2fi0yw1sxj5f41h7lihs96y9crca2srwflpdjif8sx6pk6yvq"; depends=[globaltest quantreg quantsmooth]; }; - SIMAT = derive2 { name="SIMAT"; version="1.2.0"; sha256="1qwird1yqwdh7085d4k7zgy1ld0c6215ks6i3d3d71pwg22agiw4"; depends=[ggplot2 mzR Rcpp reshape2]; }; - SISPA = derive2 { name="SISPA"; version="1.0.0"; sha256="01kf83hlc7qyyxr4dx86m9vc16cydrkw4sajs2ikpn2fnrqkx6z1"; depends=[changepoint data_table ggplot2 GSVA plyr]; }; - SJava = derive2 { name="SJava"; version="0.96.0"; sha256="17qvrd8n0vrn9fn9p31s2bhzf6064hnf89c54hbx3flzki73waaz"; depends=[]; }; - SLGI = derive2 { name="SLGI"; version="1.30.0"; sha256="1pardqmvmi4877q09n3379wq57pyqla53s8gxvygrqny2drb5crj"; depends=[AnnotationDbi Biobase BiocGenerics GO_db lattice ScISI]; }; - SLqPCR = derive2 { name="SLqPCR"; version="1.36.0"; sha256="02i77a1rrz46sgrji57nm92d6w50wcwdagxa6y2a6rdcjcv2g66n"; depends=[]; }; - SMAP = derive2 { name="SMAP"; version="1.34.0"; sha256="07mdnmirsbz8m5zky169q2mqdn1sdh1nlx8qsgdf8h0n0vcs2h3z"; depends=[]; }; - SNAGEE = derive2 { name="SNAGEE"; version="1.10.0"; sha256="187xcsdpbjdiabzjg3gggnz1rcwgjzj4279i26h879ijs7hli19w"; depends=[SNAGEEdata]; }; - SNPRelate = derive2 { name="SNPRelate"; version="1.4.2"; sha256="0iy4y58bhkr6ig1n2arw7pra29fsrxp10kzf9a479jrn3jdxxb0q"; depends=[gdsfmt]; }; - SNPchip = derive2 { name="SNPchip"; version="2.16.0"; sha256="1fxskvkzn0mfcg2zjs2r2fr0pifrha54a15vbxxcawy4pggf7fdv"; depends=[Biobase foreach GenomeInfoDb GenomicRanges IRanges lattice oligoClasses SummarizedExperiment]; }; - SNPhood = derive2 { name="SNPhood"; version="1.0.7"; sha256="1kr86xm2w6pmwbglhl97qpxyzsyqzrkzkjav6dm0zqn24f1q9579"; depends=[BiocGenerics BiocParallel Biostrings checkmate cluster data_table DESeq2 GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges lattice RColorBrewer reshape2 Rsamtools VariantAnnotation]; }; - SPEM = derive2 { name="SPEM"; version="1.10.0"; sha256="1b6r9x5q06ai6fh99a0qcx3lnjdqip7vhy32i38s16ixw9g94rcf"; depends=[Biobase Rsolnp]; }; - SPIA = derive2 { name="SPIA"; version="2.22.0"; sha256="0103aapq3p6il4acaa9fna1a5iri3fb656r60xg6ljyywcgy55yl"; depends=[KEGGgraph]; }; - SQUADD = derive2 { name="SQUADD"; version="1.20.0"; sha256="1nxf68waqnm9jaj0r8z1499kw5c6l1sykj38wikcc39bsyy23kxm"; depends=[RColorBrewer]; }; - SRAdb = derive2 { name="SRAdb"; version="1.28.0"; sha256="0savk9qi8x2vyrn2f29pzjd14ngczw3qidfggqwksayd2kx4nh1j"; depends=[GEOquery graph RCurl RSQLite]; }; - SSPA = derive2 { name="SSPA"; version="2.10.0"; sha256="1835g6chjrl1kz5zc710jy0lx04b84khk2kx981ga6rmlihn5xyc"; depends=[lattice limma qvalue]; }; - STAN = derive2 { name="STAN"; version="1.4.0"; sha256="0phrznzv3n9nvjbxb172ywxcc6dfjz2gw21w4nzxiwcjaf3kg841"; depends=[Rsolnp]; }; - STATegRa = derive2 { name="STATegRa"; version="1.4.0"; sha256="1nw4r8h8gv8y8a6qhh8gnsdc7pyp3h762ayhgkjy844kmxn316ad"; depends=[affy Biobase calibrate edgeR foreach ggplot2 gplots gridExtra limma MASS]; }; - STRINGdb = derive2 { name="STRINGdb"; version="1.10.1"; sha256="0wj8rrm7syvgisv6cn7zh81fpg33qbyzacv69d96wdwp8jsspdh2"; depends=[gplots hash igraph plotrix plyr png RColorBrewer RCurl sqldf]; }; - SVM2CRM = derive2 { name="SVM2CRM"; version="1.2.0"; sha256="06jhyvq3j35skvkf57iqfphypsv43k12i0wybhhvx4wjsdrrhmwq"; depends=[AnnotationDbi GenomicRanges IRanges LiblineaR mclust pls ROCR rtracklayer squash SVM2CRMdata verification zoo]; }; - SWATH2stats = derive2 { name="SWATH2stats"; version="1.0.3"; sha256="03p18b0kz33g7jldynxsk561xrrl547m3w7cb2gq766k56fv93m6"; depends=[data_table reshape2]; }; - SamSPECTRAL = derive2 { name="SamSPECTRAL"; version="1.24.0"; sha256="1bpaz8vzk3iysbcsdky2vcwvkc38m66b4bh1jnxgh6ld318pkllz"; depends=[]; }; - ScISI = derive2 { name="ScISI"; version="1.42.0"; sha256="0bmpl2zaalwxhhc9vj9v3x8ig6hbj4lrbfl2dxmivgsh1hqvbcli"; depends=[annotate AnnotationDbi apComplex GO_db org_Sc_sgd_db RpsiXML]; }; - SemDist = derive2 { name="SemDist"; version="1.4.0"; sha256="13wazcicjss3ybj20n958qjxk34aylpza4nggk0np8bjs5460i6j"; depends=[annotate AnnotationDbi GO_db]; }; - SeqArray = derive2 { name="SeqArray"; version="1.10.6"; sha256="1x9zf02h1x1sqypf5663hjl6xvq8d0q4h6ls1ndagkaqkrwqhgyd"; depends=[Biostrings gdsfmt GenomicRanges IRanges S4Vectors SummarizedExperiment VariantAnnotation]; }; - SeqGSEA = derive2 { name="SeqGSEA"; version="1.10.0"; sha256="02jbxncy2y2p7xg33xpv4hwcd8344qsfy3ibb9d4c8kf9b5wj9f1"; depends=[Biobase biomaRt DESeq doParallel]; }; - SeqVarTools = derive2 { name="SeqVarTools"; version="1.8.1"; sha256="1sgkcqhqhrxzipwcwn5kvhsns08dh1fdpd8xzhmzylsr5yb9cbsy"; depends=[Biobase gdsfmt GenomicRanges GWASExactHW IRanges S4Vectors SeqArray stringr VariantAnnotation]; }; - ShortRead = derive2 { name="ShortRead"; version="1.28.0"; sha256="00awzvdpd21shixcx03mjqz8bqww2z96ffkna2gpqh3f7d2pmhii"; depends=[Biobase BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges hwriter IRanges lattice latticeExtra Rsamtools S4Vectors XVector zlibbioc]; }; - SigCheck = derive2 { name="SigCheck"; version="2.2.1"; sha256="001i9izz5g9p8ymxicx884gsqc53jq6pck4al3s2i0y0mhv9dw8m"; depends=[Biobase BiocParallel e1071 MLInterfaces survival]; }; - SigFuge = derive2 { name="SigFuge"; version="1.8.0"; sha256="1bs55pc5z3x22708pdr551rxvq66i2xyi9l9j1i6vnl7h1433iy3"; depends=[GenomicRanges ggplot2 matlab reshape sigclust]; }; - SimBindProfiles = derive2 { name="SimBindProfiles"; version="1.8.0"; sha256="1cyqlzb6vykxndslwvmj9sn7hzrq3lqjwsmvkvl7ivfigrslg142"; depends=[Biobase limma mclust Ringo]; }; - SomatiCA = derive2 { name="SomatiCA"; version="1.14.0"; sha256="0a6l05zvc8jkckaznflrkknm144179hp77ck0pwrcp2065bglb1z"; depends=[DNAcopy doParallel foreach GenomicRanges IRanges lars rebmix sn]; }; - SomaticSignatures = derive2 { name="SomaticSignatures"; version="2.6.0"; sha256="14w5p7vv8nyxmbfc9yxsc21xrzi8rfylw0dcpkv0p1l431qc8icg"; depends=[Biobase Biostrings GenomeInfoDb GenomicRanges ggbio ggplot2 IRanges NMF pcaMethods proxy reshape2 S4Vectors VariantAnnotation]; }; - SpacePAC = derive2 { name="SpacePAC"; version="1.8.0"; sha256="11szjavnv8b3sdqdzda3vsx3rbzmnzdimm4b37lm3rfqzrs14qhc"; depends=[iPAC]; }; - SpeCond = derive2 { name="SpeCond"; version="1.24.0"; sha256="1a9nxq2zdv1qvqk5byi8nrazkgqkdna8i4h2vibng33cjzjvxrdv"; depends=[Biobase fields hwriter mclust RColorBrewer]; }; - SplicingGraphs = derive2 { name="SplicingGraphs"; version="1.10.0"; sha256="0p43f313qhhrpvkdsr7qzp825am6yv0cg1ypbw0kfbkgsysi7z5v"; depends=[BiocGenerics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph igraph IRanges Rgraphviz Rsamtools S4Vectors]; }; - Starr = derive2 { name="Starr"; version="1.26.0"; sha256="0ra9x1kzr0r2wa1ihapzmldq0fdr91rfbbglmzjnq92wrw6rvkd2"; depends=[affxparser affy MASS pspline Ringo zlibbioc]; }; - Streamer = derive2 { name="Streamer"; version="1.16.0"; sha256="09bjwj9ynhjl1lgwh4444xjs4l1vj8sar5d1ph1b12fl48rb62zm"; depends=[BiocGenerics graph RBGL]; }; - SummarizedExperiment = derive2 { name="SummarizedExperiment"; version="1.0.2"; sha256="1gpmh1mi70m5k5qnyjs1h0qn8ajrzalzic7k3762xchxsmmdvxn4"; depends=[Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; - Sushi = derive2 { name="Sushi"; version="1.8.0"; sha256="1ldvv1028chnh8ng85534k924cgdmzqb3i18z6xpacsjgg5k7s7l"; depends=[biomaRt zoo]; }; - SwimR = derive2 { name="SwimR"; version="1.8.0"; sha256="0vwjrpm4qbhc8afv0zj0al3rv06izp649kz8h3pb1yixw4bwrxg8"; depends=[gplots heatmap_plus R2HTML signal]; }; - TCC = derive2 { name="TCC"; version="1.10.0"; sha256="1r56h2l2jcva4fi6yzch4rwllyp5hwvy93dn1rna9jjf8q5m4nkp"; depends=[baySeq DESeq DESeq2 edgeR ROC samr]; }; - TCGAbiolinks = derive2 { name="TCGAbiolinks"; version="1.0.9"; sha256="12rg49xqfbgh1djirlj9bs29c6iksjs7szrd62lwpi9ljdn1sqsc"; depends=[affy Biobase BiocGenerics biomaRt coin ConsensusClusterPlus data_table devtools dnet doParallel downloader dplyr EDASeq edgeR genefilter GenomicFeatures GenomicRanges GGally ggplot2 gplots heatmap_plus igraph IRanges limma plyr RColorBrewer RCurl rjson rvest S4Vectors scales stringr SummarizedExperiment supraHex survival TxDb_Hsapiens_UCSC_hg19_knownGene xlsx XML xml2 xtable]; }; - TDARACNE = derive2 { name="TDARACNE"; version="1.20.0"; sha256="0jf89s2bnz8psd7vqh3l29ch5mb2ilky2jmv8db4kcqaw9157kn8"; depends=[Biobase GenKern Rgraphviz]; }; - TEQC = derive2 { name="TEQC"; version="3.10.0"; sha256="1kpibmaqqrdshbrw94080zxjlscfssddzjaqlx3l9zvhrw9sbl38"; depends=[Biobase BiocGenerics hwriter IRanges Rsamtools]; }; - TFBSTools = derive2 { name="TFBSTools"; version="1.8.2"; sha256="1fnfm3masx093p879ak193v2nf62rlncq1j6wbjkhq61imyr02pm"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome caTools CNEr DirichletMultinomial GenomeInfoDb GenomicRanges gtools IRanges RSQLite rtracklayer S4Vectors seqLogo TFMPvalue XML XVector]; }; - TIN = derive2 { name="TIN"; version="1.2.0"; sha256="051v518zyqz2lrp886hqapchngqxj2kz58dchjvafgaa2l5zyy9z"; depends=[aroma_affymetrix data_table impute squash stringr WGCNA]; }; - TPP = derive2 { name="TPP"; version="2.0.3"; sha256="152hay6h8nwjp2yfqz8wl7y6jv32h6aq9kn58vsyrjaay6kd9v2g"; depends=[Biobase doParallel foreach ggplot2 gridExtra nls2 openxlsx plyr RColorBrewer RCurl reshape2 VennDiagram VGAM]; }; - TRONCO = derive2 { name="TRONCO"; version="2.2.0"; sha256="1ljciqm93iqr184pyyw1rdqdqllkk548zp68zpcvv91g7kdgf7ii"; depends=[bnlearn cgdsr doParallel ggplot2 gridExtra gtable igraph RColorBrewer reshape2 Rgraphviz scales xtable]; }; - TSCAN = derive2 { name="TSCAN"; version="1.8.0"; sha256="1cp723wp4g4g42l25p313lyc7hv4lp8fg95k60kpnqql356b0c7p"; depends=[combinat fastICA ggplot2 gplots igraph mclust mgcv plyr shiny]; }; - TSSi = derive2 { name="TSSi"; version="1.16.0"; sha256="16cry226v35mjgw1w1sk4kgi8cjqwkls563y088mfz6fygfmg4ld"; depends=[Biobase BiocGenerics Hmisc IRanges minqa plyr S4Vectors]; }; - TarSeqQC = derive2 { name="TarSeqQC"; version="1.0.2"; sha256="1k9wf8q82yx6ygvxl9vaj8ypwaljxjv76jk8xwf994hxn1sjx7v4"; depends=[BiocGenerics BiocParallel cowplot GenomeInfoDb GenomicRanges ggplot2 IRanges openxlsx plyr reshape2 Rsamtools S4Vectors]; }; - TargetScore = derive2 { name="TargetScore"; version="1.8.0"; sha256="184n05p2c9g5yc53sx29dxq1pqa3appb2s7wr6n0271c08lkqc11"; depends=[Matrix pracma]; }; - TargetSearch = derive2 { name="TargetSearch"; version="1.26.0"; sha256="1kk8qnrp8x4iijmkbqrvpyjvf7z8yd1jwp6mgjlqba5l09n65g29"; depends=[]; }; - TitanCNA = derive2 { name="TitanCNA"; version="1.8.0"; sha256="06i4gbpw356m9qxl5kj0xgnr6kvcl85qnq1z6aqjhy2x5qdiw92n"; depends=[foreach GenomeInfoDb IRanges Rsamtools]; }; - ToPASeq = derive2 { name="ToPASeq"; version="1.4.0"; sha256="18fwifmih7x4wr7s3nr8qwvxbp0a33qj39sfwkvhr97jqdggb78j"; depends=[AnnotationDbi Biobase clipper DESeq DESeq2 doParallel edgeR fields GenomicRanges graph graphite gRbase KEGGgraph limma locfit qpgraph R_utils RBGL Rcpp Rgraphviz TeachingDemos]; }; - TransView = derive2 { name="TransView"; version="1.14.0"; sha256="02as66pzhgls2papji5mqpaczvdfpi6af0mafip8i9hj06z41wci"; depends=[GenomicRanges gplots IRanges Rsamtools zlibbioc]; }; - TurboNorm = derive2 { name="TurboNorm"; version="1.18.0"; sha256="145fb32c5zi7rhnqxad6nq1vx61vc1f28qjxvnccxxb2ia3b8jcd"; depends=[affy convert lattice limma marray]; }; - TypeInfo = derive2 { name="TypeInfo"; version="1.36.0"; sha256="0f0cllsf0pw2bgvq9fhfksqsxb2820js5y125vhcr0ns5kcvi07y"; depends=[]; }; - UNDO = derive2 { name="UNDO"; version="1.12.0"; sha256="1qz9md9j8jhrgl7iap6im4y08nwnydzgxpanpnpsaad1irrlgcaq"; depends=[Biobase BiocGenerics boot MASS nnls]; }; - UniProt_ws = derive2 { name="UniProt.ws"; version="2.10.4"; sha256="0wx5jd45b69id7ffhyc8py15kw8nl0ii0j528xfw7m2x1xzydn6w"; depends=[AnnotationDbi BiocGenerics RCurl RSQLite]; }; - VanillaICE = derive2 { name="VanillaICE"; version="1.32.2"; sha256="0qbj7rqhwmyz7dgljx6f9viy3gxnb2hnmnp8pnrj454l2hn30yj6"; depends=[Biobase BiocGenerics crlmm data_table foreach GenomeInfoDb GenomicRanges IRanges lattice matrixStats oligoClasses S4Vectors SummarizedExperiment]; }; - VariantAnnotation = derive2 { name="VariantAnnotation"; version="1.16.4"; sha256="1z42j3p9b8h725inq8n0230llsdbav3gwcxy1nliypzfkxbzahsb"; depends=[AnnotationDbi Biobase BiocGenerics Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment XVector zlibbioc]; }; - VariantFiltering = derive2 { name="VariantFiltering"; version="1.6.20"; sha256="1bfp9x4njgmzqc17c2mv5s9lvrzymjr2rjyhng5d8sq2ms7da9kp"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges graph Gviz IRanges RBGL Rsamtools RSQLite S4Vectors shiny VariantAnnotation XVector]; }; - VariantTools = derive2 { name="VariantTools"; version="1.12.0"; sha256="0c2sh4fda4gjxazxzd694a5cqj57mpa7f6hvafn6k40iz816x22f"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicRanges gmapR IRanges Matrix Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; - Vega = derive2 { name="Vega"; version="1.18.0"; sha256="0f7rzzckd69xbnism0v7jl0dly55lwj30nla7yj88qqalnb7ajzs"; depends=[]; }; - VegaMC = derive2 { name="VegaMC"; version="3.8.0"; sha256="004zx8hihj503g5fiq5njk09fns6ra7qvzbzb44q2dpd0n02ifqc"; depends=[Biobase biomaRt genoset]; }; - XBSeq = derive2 { name="XBSeq"; version="1.0.2"; sha256="01h3hj4mm7dr16vwbra5iazrgar9nbh2gs2gklyx0wqjfzm3gj49"; depends=[Biobase Delaporte DESeq2 dplyr ggplot2 locfit magrittr matrixStats pracma]; }; - XDE = derive2 { name="XDE"; version="2.16.0"; sha256="0zwp1vqjp3bfxvnkik9k57djnyf29qm57wlldv3zgk65lqxrdm5n"; depends=[Biobase BiocGenerics genefilter gtools MergeMaid mvtnorm]; }; - XVector = derive2 { name="XVector"; version="0.10.0"; sha256="0havwyr6xqk7w0rmbwfj9jq1djz7wzdz7w39adhklwzwz9l4ih3a"; depends=[BiocGenerics IRanges S4Vectors zlibbioc]; }; - a4 = derive2 { name="a4"; version="1.18.0"; sha256="07969ixxf20i2xh8c29s6qgghk7qndlc8b30w9ydq5yfd8v1wdys"; depends=[a4Base a4Classif a4Core a4Preproc a4Reporting]; }; - a4Base = derive2 { name="a4Base"; version="1.18.0"; sha256="1xqdkax03yqnzzyys3zdzndgzp5z52zpvbllqnnlhpf7j0wgqms4"; depends=[a4Core a4Preproc annaffy AnnotationDbi Biobase genefilter glmnet gplots limma mpm multtest]; }; - a4Classif = derive2 { name="a4Classif"; version="1.18.0"; sha256="1bci0b09h5622xn195mrf3s2h7mngjvnx7h5z4smykja7fxn839p"; depends=[a4Core a4Preproc glmnet MLInterfaces pamr ROCR varSelRF]; }; - a4Core = derive2 { name="a4Core"; version="1.18.0"; sha256="0zchs5rii0215x6vk3ma210l1j9m5hlmpfs973h3lia7qb2amjkp"; depends=[Biobase glmnet]; }; - a4Preproc = derive2 { name="a4Preproc"; version="1.18.0"; sha256="1hil6m4mqjw6ppn13ljpji1vdinsc6lsibknm974ykjjh1nkx9sx"; depends=[AnnotationDbi]; }; - a4Reporting = derive2 { name="a4Reporting"; version="1.18.0"; sha256="156l5qrhwlsr3vvxwpxzkgajb6pcz0ilfm4dw4jinm1kyy3k7fkr"; depends=[annaffy xtable]; }; - aCGH = derive2 { name="aCGH"; version="1.48.0"; sha256="0pch06jwwdn6s6cphrn4qn0syc47crliw9s5ii3dm03nh4z6p668"; depends=[Biobase cluster multtest survival]; }; - acde = derive2 { name="acde"; version="1.0.0"; sha256="039dy5ssrnf9i8ahjfmf18f3z8vk2x61zkx3snm27mr0vi7nw84n"; depends=[boot]; }; - adSplit = derive2 { name="adSplit"; version="1.40.0"; sha256="1djrgfspgi5aijpplqcq61mc4sbnfjj3rk1w3q714y2qazm0675i"; depends=[AnnotationDbi Biobase cluster GO_db KEGG_db multtest]; }; - affxparser = derive2 { name="affxparser"; version="1.42.0"; sha256="13asms378wid2kw0p2qz6q3bq6didpgkv58sbl6f8amcy5yxvkf9"; depends=[]; }; - affy = derive2 { name="affy"; version="1.48.0"; sha256="1k26qw2iirhsgfmkii49azcfki5hk9lpz6v9glayq78j3rspn1sk"; depends=[affyio Biobase BiocGenerics BiocInstaller preprocessCore zlibbioc]; }; - affyContam = derive2 { name="affyContam"; version="1.28.0"; sha256="04xq22z965pdh5sy5lgfh2asqjxydm4mzgkz6wqk479xfqdhny5k"; depends=[affy affydata Biobase]; }; - affyILM = derive2 { name="affyILM"; version="1.22.0"; sha256="0a51ynrzhb2w2gkgnnnyi36xljmkjkw954541ah82x5hq14aj0wc"; depends=[affxparser affy Biobase gcrma]; }; - affyPLM = derive2 { name="affyPLM"; version="1.46.0"; sha256="19ci6vc899j39s2w48f64wy9yl5ls8xmxv7gmdwk4dmp2xm6ys2h"; depends=[affy Biobase BiocGenerics gcrma preprocessCore zlibbioc]; }; - affyPara = derive2 { name="affyPara"; version="1.30.0"; sha256="14g7xrzsqqsr2h20nv000dd3v71wq18bq78r345w29fs53kipxxd"; depends=[affy affyio aplpack snow vsn]; }; - affyQCReport = derive2 { name="affyQCReport"; version="1.48.0"; sha256="0cw6z8idar5qa9y3svrm5fdimdamb2xjjj59d107h2in7bvgni7j"; depends=[affy affyPLM Biobase genefilter lattice RColorBrewer simpleaffy xtable]; }; - affycomp = derive2 { name="affycomp"; version="1.46.0"; sha256="0irzcp3b070b4hm0x2cn8fxm9rn1nlgspjl3la37v4jpmvzldi90"; depends=[Biobase]; }; - affycoretools = derive2 { name="affycoretools"; version="1.42.0"; sha256="0b2wsxd293p8l7q6gci6gnqb0vw4r52mixrwz2af8cj6gs28l3vc"; depends=[affy AnnotationDbi Biobase gcrma ggplot2 GOstats gplots hwriter lattice limma oligoClasses ReportingTools xtable]; }; - affyio = derive2 { name="affyio"; version="1.40.0"; sha256="0xza3c9b5a3ibwif7dl92gcj44yv56m9mw7fv00ldx2pygw20nyv"; depends=[zlibbioc]; }; - affylmGUI = derive2 { name="affylmGUI"; version="1.44.0"; sha256="0gs6yc9xfjcf9jp1kg1vc4qrxs9vjm1ddhw3x3v87ywmba03xivw"; depends=[affy affyio affyPLM AnnotationDbi BiocInstaller gcrma limma R2HTML tkrplot xtable]; }; - affypdnn = derive2 { name="affypdnn"; version="1.44.0"; sha256="1av7a8w86wcslbl3q2zbnga8rww3n7dmwdywq4fm86pbmwh1jz9v"; depends=[affy]; }; - agilp = derive2 { name="agilp"; version="3.2.0"; sha256="1xfa6f78410fdggsp9mlj4102i3rzcxp78n37bkprk4sib3dvmgq"; depends=[]; }; - alsace = derive2 { name="alsace"; version="1.6.0"; sha256="1vrwi2rkccgiwgshz5rxyr55dl7awbh1drbhhsrbpjsbzxwmiv4a"; depends=[ALS ptw]; }; - altcdfenvs = derive2 { name="altcdfenvs"; version="2.32.0"; sha256="1sb516qazxvad2vayd7sai1vg6vq9g7vjy4cyx6c0mqw7sl0pagl"; depends=[affy Biobase BiocGenerics Biostrings hypergraph makecdfenv]; }; - ampliQueso = derive2 { name="ampliQueso"; version="1.8.0"; sha256="0v21y2nd0qwnag0n6h0krr9c0vpv6ig89d0jsi58x3pi5m0mypip"; depends=[DESeq doParallel edgeR foreach genefilter ggplot2 gplots knitr rgl rnaSeqMap samr statmod VariantAnnotation xtable]; }; - annaffy = derive2 { name="annaffy"; version="1.42.0"; sha256="1fygm19y0ixh5ir7pldx26xck3w9pz1r26ddkj6ffnp4bljd35lk"; depends=[AnnotationDbi Biobase GO_db KEGG_db]; }; - annmap = derive2 { name="annmap"; version="1.12.0"; sha256="12ixjb9bg49wdzjl0dpxl7lv7yj63fzsjgw2pqjwcimvgamk0vdw"; depends=[Biobase BiocGenerics DBI digest genefilter GenomicRanges IRanges lattice RMySQL Rsamtools]; }; - annotate = derive2 { name="annotate"; version="1.48.0"; sha256="1b9fm7b5j2vknf5bm1dj17g6wb3smzq8s02dhx4mlqnpif1av6dk"; depends=[AnnotationDbi Biobase BiocGenerics DBI XML xtable]; }; - annotationTools = derive2 { name="annotationTools"; version="1.44.0"; sha256="0qqkvibnz9j8p0007zahcc07y2avgcrbsxpj5hsdn4q4qs4igjxa"; depends=[Biobase]; }; - anota = derive2 { name="anota"; version="1.18.0"; sha256="0nqshv23gz2q8mqmakw0blbrynbxp2s09i120yhci4qrvay5in7w"; depends=[multtest qvalue]; }; - antiProfiles = derive2 { name="antiProfiles"; version="1.10.0"; sha256="0a707qd525265am6sc8l1k9161cjm8vblkgyzmvgy14zdw4pk479"; depends=[locfit matrixStats]; }; - apComplex = derive2 { name="apComplex"; version="2.36.0"; sha256="0y84hiyzc5i7l2k1nfjfkq5gfll8nli1bqci5jl13207zhhc8jnq"; depends=[graph org_Sc_sgd_db RBGL Rgraphviz]; }; - aroma_light = derive2 { name="aroma.light"; version="3.0.0"; sha256="1mdncg64h9d7ppg626q42xyimz1s6arj5774hxhc06hq2isb5isi"; depends=[matrixStats R_methodsS3 R_oo R_utils]; }; - arrayMvout = derive2 { name="arrayMvout"; version="1.28.0"; sha256="09jvfpzc1hz07rbsgkxcwiib6ihipq75k9w95bv4fdgd9i3jz4yb"; depends=[affy affyContam Biobase lumi mdqc parody simpleaffy]; }; - arrayQuality = derive2 { name="arrayQuality"; version="1.48.0"; sha256="0cqmbf47rxa2d3is999abwk7j4kakwlb7fhxv0qw8x2j2r33vsrl"; depends=[gridBase hexbin limma marray RColorBrewer]; }; - arrayQualityMetrics = derive2 { name="arrayQualityMetrics"; version="3.26.1"; sha256="0wqxlpppysl9kwmbppnvl78rr7f8z9787yfmr02grqrly3ag83fl"; depends=[affy affyPLM beadarray Biobase Cairo genefilter gridSVG Hmisc hwriter lattice latticeExtra limma RColorBrewer setRNG vsn XML]; }; - attract = derive2 { name="attract"; version="1.22.0"; sha256="09nizaqjnsqkxkyiyp0amyc04z2yf23gp3wqf4y1jy5x9y1kkyqz"; depends=[AnnotationDbi Biobase cluster GOstats KEGG_db limma]; }; - ballgown = derive2 { name="ballgown"; version="2.2.0"; sha256="12j7y2ldnbawqyfxaybb1a9ndylvw09n0d3p001wd1inqnml4xns"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges limma RColorBrewer rtracklayer S4Vectors sva]; }; - bamsignals = derive2 { name="bamsignals"; version="1.2.0"; sha256="11yix7rzk54zy1mh49d96kvz6ka8rlb66whb6mdkd5lyx32w8lwf"; depends=[BiocGenerics GenomicRanges IRanges Rcpp Rhtslib zlibbioc]; }; - baySeq = derive2 { name="baySeq"; version="2.4.1"; sha256="0q3gfdg9l1ipz67bcjaly6fl4pfgwd95cy2hpk4sck59lknh1jm4"; depends=[abind GenomicRanges perm]; }; - beadarray = derive2 { name="beadarray"; version="2.20.1"; sha256="1kgabdnq20i5p0yyim0m2vcp3lkn39fzlghahj9nrvrl9i4n3gyn"; depends=[AnnotationDbi BeadDataPackR Biobase BiocGenerics GenomicRanges ggplot2 illuminaio IRanges limma reshape2]; }; - beadarraySNP = derive2 { name="beadarraySNP"; version="1.36.0"; sha256="1dj5zi9lkyq5lgrcmr08cjdv3ysfa6p9zc8jza8mm6vy14qsl5ah"; depends=[Biobase quantsmooth]; }; - betr = derive2 { name="betr"; version="1.26.0"; sha256="1rs2xajrac3a4sk88i7zq3v849969iw0k8wmpbc0ihw9m4ljb0sx"; depends=[Biobase limma mvtnorm]; }; - bgafun = derive2 { name="bgafun"; version="1.32.0"; sha256="1wakjjdcgzl9snsa9i1f7kk0ppwiccxmznd93yawvjk74gqwnkp3"; depends=[ade4 made4 seqinr]; }; - bgx = derive2 { name="bgx"; version="1.36.0"; sha256="1x0i4llp6yrfybp7lwqwc7kb1s12dl8a0nwymhjd3fkfv5lslfbx"; depends=[affy Biobase gcrma]; }; - bigmemoryExtras = derive2 { name="bigmemoryExtras"; version="1.14.2"; sha256="05ksk3phvh4wc3vgfj5bl1jfxhndia90bkq9s91wfjzcfkrd41q8"; depends=[bigmemory Biobase]; }; - bioDist = derive2 { name="bioDist"; version="1.42.0"; sha256="0l5f8yj76sdx7c2zf50h395a4hbqnycnzx5iw3by4rh45xs6pcxj"; depends=[Biobase KernSmooth]; }; - bioassayR = derive2 { name="bioassayR"; version="1.8.25"; sha256="0fnqdkzpyk6zr5s2yb2sr5gp4vaga0qrdxcffcri39wvzpfny4h0"; depends=[BiocGenerics ChemmineR DBI Matrix rjson RSQLite XML]; }; - biobroom = derive2 { name="biobroom"; version="1.2.0"; sha256="15v4s9cdvl4n5sx0n2sskhmq9xvs2cdrxxd7y4l59jgg421fzg7i"; depends=[Biobase broom dplyr tidyr]; }; - biocGraph = derive2 { name="biocGraph"; version="1.32.0"; sha256="0sdnysj0dds74a7jb9qrpkix34d8ray5sp4v6c0kwzcqvax47a1s"; depends=[BiocGenerics geneplotter graph Rgraphviz]; }; - biocViews = derive2 { name="biocViews"; version="1.38.1"; sha256="1ydgxnzkmdfydj6x1pi46qaf8l0nlvw9ycx91zwylwbpz37mss49"; depends=[Biobase graph knitr RBGL RCurl RUnit XML]; }; - biomaRt = derive2 { name="biomaRt"; version="2.26.1"; sha256="1s709055abj2gd35g6nnk5d2ai5ii09iir270l2xika6pi62gj3f"; depends=[AnnotationDbi RCurl XML]; }; - biomvRCNS = derive2 { name="biomvRCNS"; version="1.10.0"; sha256="1vma189z83hvq90g6vaaw87znpk7srl2s1vikicah40s72awywm6"; depends=[GenomicRanges Gviz IRanges mvtnorm]; }; - biosvd = derive2 { name="biosvd"; version="2.6.0"; sha256="0mjkan7drib9v49dk3rnrkydm1dxfqimk5gk4jm9qv8kdfcjk0zh"; depends=[Biobase BiocGenerics NMF]; }; - biovizBase = derive2 { name="biovizBase"; version="1.18.0"; sha256="1lp89grxfgkhc9h5jmqs2nr9gr8321nyzwimrszls9dcc787xf00"; depends=[AnnotationDbi BiocGenerics Biostrings dichromat GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Hmisc IRanges RColorBrewer Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; }; - birta = derive2 { name="birta"; version="1.14.0"; sha256="1pszpvmvjp1r0bwj7w9ws0y8xmb3yfmq5gifj9jwvgw2p7y718zr"; depends=[Biobase limma MASS]; }; - birte = derive2 { name="birte"; version="1.6.1"; sha256="08jkjlkjswz3x4sxw80xr9ck6277ag1gzv5y1dxh7aa6i644w48p"; depends=[Biobase glmnet limma MASS nem Rcpp RcppArmadillo]; }; - blima = derive2 { name="blima"; version="1.4.0"; sha256="1mv153f42x0pjva03gw8b064qmf2558p82xqzvxqycyn7ry3riyz"; depends=[beadarray Biobase BiocGenerics]; }; - bridge = derive2 { name="bridge"; version="1.34.0"; sha256="08lfbczaj7hkgqfsm060z56anx1yvsfwknzw40gq919k0zm9vfcf"; depends=[rama]; }; - bsseq = derive2 { name="bsseq"; version="1.6.0"; sha256="1bz3b79iiqz251nq54lybxd9bfyzm44p1dbb3nxmjdnf2n1gxs5w"; depends=[Biobase BiocGenerics data_table GenomeInfoDb GenomicRanges gtools IRanges locfit matrixStats R_utils S4Vectors scales SummarizedExperiment]; }; - bumphunter = derive2 { name="bumphunter"; version="1.10.0"; sha256="086rin3gzzxf0lin5fymmsws1k7jhsy4psrkrcpajq09b2qy2s6b"; depends=[AnnotationDbi BiocGenerics doRNG foreach GenomeInfoDb GenomicFeatures GenomicRanges IRanges iterators limma locfit matrixStats S4Vectors]; }; - caOmicsV = derive2 { name="caOmicsV"; version="1.0.0"; sha256="0162h17szpr98g4lgz5nypcrslk4103hdn5qdxfxv6frssn9l9g3"; depends=[bc3net igraph]; }; - canceR = derive2 { name="canceR"; version="1.2.0"; sha256="1a9vd2mvz22ajgcxw0k57965gnx91lf7ki6cdc5gsqcfib7xj9n5"; depends=[Biobase cgdsr circlize Formula geNetClassifier GSEABase GSEAlm phenoTest plyr rpart RUnit survival tcltk2 tkrplot]; }; - cancerclass = derive2 { name="cancerclass"; version="1.14.0"; sha256="0sgiy31h24wlz2q54ssygbdvikzlp8sqf4knkfxc7178a2aq41p4"; depends=[binom Biobase]; }; - casper = derive2 { name="casper"; version="2.4.0"; sha256="19wx4h2pgvi3kdcr28spagjg9qy4g2n5pspv8jn7s9crydihq1v9"; depends=[Biobase BiocGenerics coda EBarrays gaga GenomeInfoDb GenomicFeatures GenomicRanges gtools IRanges limma mgcv Rsamtools rtracklayer S4Vectors sqldf survival VGAM]; }; - categoryCompare = derive2 { name="categoryCompare"; version="1.14.0"; sha256="12gqbmkh5rpbp2nqn8j1mhss3v67jiphqxw0cfgb97y6hh7bcfg6"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category colorspace GOstats graph GSEABase hwriter RCytoscape]; }; - ccrepe = derive2 { name="ccrepe"; version="1.6.0"; sha256="1h96ga660yp1bd20f5ykywybhiwzxrll2p0shkk7wqbn1x7rz1wj"; depends=[infotheo]; }; - cellGrowth = derive2 { name="cellGrowth"; version="1.14.0"; sha256="0d40kll2rkzijyk0d0xb9rzyck5r0hkybv0j1ba72g9kk2mdmz7z"; depends=[lattice locfit]; }; - cellHTS = derive2 { name="cellHTS"; version="1.40.1"; sha256="1pfvndkcmnq1jawijl7yd46jj92d6xlzhv717sd03a6skk11hwwi"; depends=[Biobase genefilter prada RColorBrewer]; }; - cellHTS2 = derive2 { name="cellHTS2"; version="2.34.1"; sha256="068lqpxhy04fhpma8cbd79jwg0cifvg8qhav5a4p22dgmalvajw1"; depends=[Biobase Category genefilter GSEABase hwriter locfit prada RColorBrewer splots vsn]; }; - cghMCR = derive2 { name="cghMCR"; version="1.28.0"; sha256="02a5a2aj35n3y34gv1j6mk3ahm27i10ahj1msbzp62w8ph9lnasx"; depends=[BiocGenerics CNTools DNAcopy limma]; }; - charm = derive2 { name="charm"; version="2.16.0"; sha256="14nlmii9rqgl6y0fk0gxk11dnjr33mavchp0iban0cr0hn44inm0"; depends=[Biobase Biostrings BSgenome ff fields genefilter gtools IRanges limma nor1mix oligo oligoClasses preprocessCore RColorBrewer siggenes SQN sva]; }; - chimera = derive2 { name="chimera"; version="1.12.0"; sha256="11arbg6c76rx4zyylp6ga8ygx8890h0pkg4ciwhy4xc8x1smmq7r"; depends=[AnnotationDbi Biobase BSgenome_Hsapiens_UCSC_hg19 GenomicAlignments GenomicRanges Homo_sapiens Rsamtools TxDb_Hsapiens_UCSC_hg19_knownGene]; }; - chipenrich = derive2 { name="chipenrich"; version="1.8.0"; sha256="0xzh3nrw62ars7xnnj9qkdsg9yaq1q3xx63l1bi91lxbfih7k9wr"; depends=[chipenrich_data GenomicRanges IRanges lattice latticeExtra mgcv plyr rms stringr]; }; - chipseq = derive2 { name="chipseq"; version="1.20.0"; sha256="1j3kh5alahrqfp0sxkz9b9v8fm8p5gm3nyw1nbcj20ajiapi1gnp"; depends=[BiocGenerics GenomicRanges IRanges lattice S4Vectors ShortRead]; }; - chopsticks = derive2 { name="chopsticks"; version="1.34.0"; sha256="112d4r6ns916yjxzaakghwvbin4cadijpxanm6qs08lyap5imz4s"; depends=[survival]; }; - chroGPS = derive2 { name="chroGPS"; version="1.14.0"; sha256="0i0hrf38sjsay6r6zh69cy6xki17cjw427szq4h7770jlphiq8n1"; depends=[Biobase changepoint cluster DPpackage ICSNP IRanges MASS]; }; - chromDraw = derive2 { name="chromDraw"; version="1.2.0"; sha256="04zcx2y8x4s3rmfljxgm4h7p7gjrhfgqfhyx6h9f96l734l4f8hs"; depends=[GenomicRanges Rcpp]; }; - cisPath = derive2 { name="cisPath"; version="1.10.0"; sha256="0wqbmqpm6qbrwfnl0s4dn569s74x8g9501ckx0h2g38w961z36k3"; depends=[]; }; - cleanUpdTSeq = derive2 { name="cleanUpdTSeq"; version="1.8.0"; sha256="1ck58mxnx4q1y8wdi8mbp8ijbg30zmfbhp5ldp09zq2m0j746183"; depends=[BiocGenerics BSgenome BSgenome_Drerio_UCSC_danRer7 e1071 GenomicRanges seqinr]; }; - cleaver = derive2 { name="cleaver"; version="1.8.0"; sha256="057nvg1cf0prbwarqwv53r651pc1i5sjj6x9nlnshxrgjrwa47ff"; depends=[Biostrings IRanges S4Vectors]; }; - clippda = derive2 { name="clippda"; version="1.20.0"; sha256="1d76air1vf29b9bmycak9fx5silkx9d8k6cpding6pw50d63wcb1"; depends=[Biobase lattice limma rgl scatterplot3d statmod]; }; - clipper = derive2 { name="clipper"; version="1.10.0"; sha256="1dyaazkwrrh6s3f2a0yj3i92jg16azf92az9lsjy3dbrwi8zhi7l"; depends=[Biobase corpcor graph gRbase igraph KEGGgraph Matrix qpgraph RBGL Rcpp]; }; - clonotypeR = derive2 { name="clonotypeR"; version="1.8.0"; sha256="1fj00hrxijkn002ixa7kn07jq94mlsgz99xr3sapzg0jqacgp9q0"; depends=[]; }; - clst = derive2 { name="clst"; version="1.18.0"; sha256="0zg3cdd8j46lm750q0ckin42pmvj0hddl1j2j4lh7x50gvqwyjyz"; depends=[lattice ROC]; }; - clstutils = derive2 { name="clstutils"; version="1.18.0"; sha256="169pzadyhszaxc8r7z1qysmcsijp2x5pw9bizbkkw7i92r8gf4n7"; depends=[ape clst lattice rjson RSQLite]; }; - clusterProfiler = derive2 { name="clusterProfiler"; version="2.4.3"; sha256="0fhi1dm8xifz5wzg756y12980a46cqk3mn32i7rg60f0iy2ax0s0"; depends=[AnnotationDbi DOSE ggplot2 GO_db GOSemSim KEGGREST magrittr plyr qvalue topGO]; }; - clusterStab = derive2 { name="clusterStab"; version="1.42.0"; sha256="162kq03vs5d3rnmh9kh5djal6vgyr3pzmihjgq50dp04b89ha2d8"; depends=[Biobase]; }; - cn_farms = derive2 { name="cn.farms"; version="1.18.0"; sha256="0d4xwdzccs5wk52ifqryj3cp60vf4yga6ddhs97p0znafh4gfsjv"; depends=[affxparser Biobase DBI DNAcopy ff lattice oligo oligoClasses preprocessCore snow]; }; - cn_mops = derive2 { name="cn.mops"; version="1.16.2"; sha256="0c325s454rjiiyydf82vg72a7rfkj36s1dxbib42qvp1pc35rmj3"; depends=[Biobase BiocGenerics GenomicRanges IRanges Rsamtools]; }; - cnvGSA = derive2 { name="cnvGSA"; version="1.14.0"; sha256="1kw5161fnlc7b1b03a4kpqz4hlrknyj8dlm8wffjj1d45g1rpvwd"; depends=[brglm doParallel foreach GenomicRanges splitstackshape]; }; - coGPS = derive2 { name="coGPS"; version="1.14.0"; sha256="1bylnhcvbrimjld5nar42kr577lzw97d2f4bibrbqysp332wi1iz"; depends=[]; }; - coMET = derive2 { name="coMET"; version="1.2.0"; sha256="0nsz6ci6kcnanm465420sicbp84w2rg58j1550jhnrn4cx4pxm4j"; depends=[biomaRt colortools GenomicRanges ggbio ggplot2 gridExtra Gviz hash IRanges psych rtracklayer S4Vectors trackViewer]; }; - coRNAi = derive2 { name="coRNAi"; version="1.20.0"; sha256="05jv85jbb5lz0x0cmg52sn6gnsscyq939yyk6ll9061bx51as7cv"; depends=[cellHTS2 gplots lattice limma locfit MASS]; }; - cobindR = derive2 { name="cobindR"; version="1.8.0"; sha256="06nckxm5hz6c336p5fvfmccfzdri68qcmagkyjg7nnfsyl66fri1"; depends=[BiocGenerics biomaRt Biostrings BSgenome gmp gplots IRanges mclust rtfbs seqinr yaml]; }; - codelink = derive2 { name="codelink"; version="1.38.0"; sha256="11rs0nr0nqfmy0v4yfzd7wgq9g0rqzr7r7jcr16z79lc6f5lqm9z"; depends=[annotate Biobase BiocGenerics limma]; }; - cogena = derive2 { name="cogena"; version="1.4.0"; sha256="16imyy9y4jd71pnaf41isrmw711kp4ky61bljn8kmlm9kqf2lbm0"; depends=[amap apcluster Biobase biwt class cluster corrplot devtools doParallel dplyr fastcluster foreach ggplot2 gplots kohonen mclust reshape2]; }; - compEpiTools = derive2 { name="compEpiTools"; version="1.4.0"; sha256="0pygd78pi7h050fra41kvwcx5id9ivisdlnaqdxwk1xd07xb67ck"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges GO_db gplots IRanges methylPipe Rsamtools S4Vectors topGO XVector]; }; - compcodeR = derive2 { name="compcodeR"; version="1.6.0"; sha256="1f84n01c83p5x72ws7a7cam0g0l7n2wjy5pyf06hbwgc0ziz57cs"; depends=[caTools edgeR gdata ggplot2 gplots gtools KernSmooth knitr lattice limma markdown MASS modeest ROCR sm stringr vioplot]; }; - conumee = derive2 { name="conumee"; version="1.2.0"; sha256="1410a8sby4azkj14wqxrsi5i4kiyhgnpidj70ysygk5y2mlghs4x"; depends=[DNAcopy GenomeInfoDb GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IRanges minfi rtracklayer]; }; - convert = derive2 { name="convert"; version="1.46.0"; sha256="04zg65yylg3rifn49k015nf38v3ga0kwq4m9hykb8lfqiw63sxgq"; depends=[Biobase limma marray]; }; - copa = derive2 { name="copa"; version="1.38.0"; sha256="0dmrmf60q83srilzxgwcknnd4wsx4xdlf6plfgz3wks6nyfwy256"; depends=[Biobase]; }; - copynumber = derive2 { name="copynumber"; version="1.10.0"; sha256="1g03cy5inbhzhl5hj8vma34xm8lixilhalavjysp93bwg4dfskv6"; depends=[BiocGenerics GenomicRanges IRanges S4Vectors]; }; - cosmiq = derive2 { name="cosmiq"; version="1.4.0"; sha256="079423bhmjk5c0x4xq8kxqbcvj8mvh30gy31zr5xn7m9lysmzglc"; depends=[faahKO MassSpecWavelet pracma Rcpp xcms]; }; - cpvSNP = derive2 { name="cpvSNP"; version="1.2.0"; sha256="1wnbl6wgflfhjkrv8l5i182mpfxk440rzacpsij0xq0f823nxxgf"; depends=[BiocParallel corpcor GenomicFeatures ggplot2 GSEABase plyr]; }; - cqn = derive2 { name="cqn"; version="1.16.0"; sha256="0cmi8nfk5yh4mma43kay8pglysd26kq17kxa98yirwgdj8cgq5rj"; depends=[mclust nor1mix preprocessCore quantreg]; }; - crlmm = derive2 { name="crlmm"; version="1.28.2"; sha256="1acfd5w2h6z5ksclp7grb42p59jyjm2q4cx9pjc32y0cdvndqhy8"; depends=[affyio Biobase BiocGenerics ellipse ff foreach illuminaio lattice matrixStats mvtnorm oligoClasses preprocessCore RcppEigen SNPchip VGAM]; }; - csaw = derive2 { name="csaw"; version="1.4.1"; sha256="1yl4ckh0289k633kj6msl6rj7rdvcd9h8gnscz6p63n4c6mfpy13"; depends=[AnnotationDbi edgeR GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges limma Rsamtools S4Vectors SummarizedExperiment]; }; - ctc = derive2 { name="ctc"; version="1.44.0"; sha256="1wlk1skc6vg10gdcdqdwc5mnh5ags7f13sxmjc19gg6n7wfkjrqg"; depends=[amap]; }; - cummeRbund = derive2 { name="cummeRbund"; version="2.12.1"; sha256="02d9g8rzwj47faijk26q6jg7p687gw87knyycxmljr9vn7157d20"; depends=[Biobase BiocGenerics fastcluster ggplot2 Gviz plyr reshape2 RSQLite rtracklayer]; }; - customProDB = derive2 { name="customProDB"; version="1.10.0"; sha256="04iiwfvjavn3zz6fhf24wd3xy0svviqqklg64hnwza2m4w50awag"; depends=[AnnotationDbi biomaRt Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges plyr RCurl Rsamtools RSQLite rtracklayer stringr VariantAnnotation]; }; - cycle = derive2 { name="cycle"; version="1.24.0"; sha256="14xzwlwkb93bhqwwy36bsqimabpmg5an6n6y8xkh5zsxw2c7m1qi"; depends=[Biobase Mfuzz]; }; - cytofkit = derive2 { name="cytofkit"; version="1.2.2"; sha256="1sg6phm9lxw341rangllkiq81bz4073y6zg0d5qz0gyxywv2ycfs"; depends=[Biobase doParallel e1071 flowCore ggplot2 gplots igraph pdist plyr RANN Rcpp reshape reshape2 Rtsne shiny vegan VGAM]; }; - daMA = derive2 { name="daMA"; version="1.42.0"; sha256="1qggz9hrgm2xb2dz9k9gqwygj1ywy0qwzv7lqpn58pz590mz1xds"; depends=[MASS]; }; - dagLogo = derive2 { name="dagLogo"; version="1.8.0"; sha256="0knsvldhdmprqjdxcdi9ccva4fi8vx86mc257nbmj21ac72bynx3"; depends=[biomaRt Biostrings grImport motifStack pheatmap]; }; - ddCt = derive2 { name="ddCt"; version="1.26.0"; sha256="1rqh6sgw7qlyrpyxgmg6xl7df2jicxzxzq6xnp7l40w6vnjc595a"; depends=[Biobase BiocGenerics lattice RColorBrewer xtable]; }; - ddgraph = derive2 { name="ddgraph"; version="1.14.0"; sha256="0nmrz9cy7l31vym3fcc9m3dmgmbnd5r91p3fxpziaarphi27zszl"; depends=[bnlearn graph gtools MASS pcalg plotrix RColorBrewer Rcpp]; }; - deepSNV = derive2 { name="deepSNV"; version="1.16.0"; sha256="1vzcyqvjzzjlm3np3yyazdvj7jdiwc2wnxghaz8rnxyzm42bmjha"; depends=[Biostrings GenomicRanges IRanges Rhtslib SummarizedExperiment VariantAnnotation VGAM]; }; - deltaGseg = derive2 { name="deltaGseg"; version="1.10.1"; sha256="0dakvg2m99wm7zg84w3pzvpwi7sjdarib8bl14wyv2bh9lxq93s3"; depends=[changepoint fBasics ggplot2 pvclust reshape scales tseries wavethresh]; }; - derfinder = derive2 { name="derfinder"; version="1.4.4"; sha256="0pjsah2rgxy4584p815zwacspjwx42wv5q1h9v1rywmsbhhfmrdr"; depends=[AnnotationDbi BiocParallel bumphunter derfinderHelper GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges Hmisc IRanges qvalue Rsamtools rtracklayer S4Vectors]; }; - derfinderHelper = derive2 { name="derfinderHelper"; version="1.4.1"; sha256="1mbhr766vl8skcs74xdfx5p7812x5xbv9pgn9nl2s1d9ifcs8zf8"; depends=[IRanges Matrix S4Vectors]; }; - derfinderPlot = derive2 { name="derfinderPlot"; version="1.4.1"; sha256="16zsq13v86h5zfngh8621ayw5dvb14r486dzak6lz59pqzmviw8g"; depends=[derfinder GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 IRanges limma plyr RColorBrewer reshape2 scales]; }; - destiny = derive2 { name="destiny"; version="1.0.0"; sha256="1k8nf9gws6d60fp7mh43hjiaza7zxxfkpjzmi5qj2davjqbx1wn0"; depends=[Biobase BiocGenerics FNN igraph Matrix proxy Rcpp RcppEigen scatterplot3d VIM]; }; - dexus = derive2 { name="dexus"; version="1.10.0"; sha256="0hc28mkmnr37fmw6xw2cywla946gm0cxa8k4hi32d12cm9c24xqx"; depends=[BiocGenerics]; }; - diffGeneAnalysis = derive2 { name="diffGeneAnalysis"; version="1.52.0"; sha256="1w44iihckyjw8hpzwr0dsc558c3vzdiw2nbwysmqn0dn4w18xkj2"; depends=[minpack_lm]; }; - diffHic = derive2 { name="diffHic"; version="1.2.2"; sha256="1qa21hqsmxi2f168z6r0qlv2453ljdnldc90c789dwi3067ysjnj"; depends=[BiocGenerics Biostrings BSgenome csaw edgeR GenomeInfoDb GenomicRanges IRanges limma locfit rhdf5 Rsamtools S4Vectors]; }; - diggit = derive2 { name="diggit"; version="1.2.0"; sha256="1c83jhih9sg39n7sf83ddsxwjjcqklh0ssb9a4jfyvfahsqcghcb"; depends=[Biobase ks viper]; }; - dks = derive2 { name="dks"; version="1.16.0"; sha256="1l98ya4f8mnzvpj1igzbn6s9yvmv3i31ll5l7hbipk4g7n1lyqal"; depends=[cubature]; }; - domainsignatures = derive2 { name="domainsignatures"; version="1.30.0"; sha256="0rr5d57cjkp46qp2908vh3wyfdgiyaikdgbcxipizcv5a00nq0rx"; depends=[AnnotationDbi biomaRt KEGG_db prada]; }; - dualKS = derive2 { name="dualKS"; version="1.30.0"; sha256="02j9l73brxa4fgsp9cbd3w7dxllvj744rby21dkfnw2c42rcxpvz"; depends=[affy Biobase]; }; - dupRadar = derive2 { name="dupRadar"; version="1.0.0"; sha256="1fk58zdrw8nwjq1cq7k3rb6nx5fxhkj1p6b6mv32ha8bxwdl3dj0"; depends=[Rsubread]; }; - dyebias = derive2 { name="dyebias"; version="1.28.0"; sha256="0vahrl947rf0wlz38v7jippdlvd5yhr02y554hs1ilcdz1czmyvn"; depends=[Biobase marray]; }; - easyRNASeq = derive2 { name="easyRNASeq"; version="2.6.3"; sha256="1r6q3f8zril2l0a6l18yw0is85nh4xn759mv8mxc2cmh0d4f60d5"; depends=[Biobase BiocGenerics BiocParallel biomaRt Biostrings DESeq edgeR GenomeInfoDb genomeIntervals GenomicAlignments GenomicRanges IRanges locfit LSD Rsamtools S4Vectors ShortRead SummarizedExperiment]; }; - ecolitk = derive2 { name="ecolitk"; version="1.42.0"; sha256="0hcigc60k11s3ha0jwxlvw9zf66x8090yq5m72q6nzzjzr9rvv1r"; depends=[Biobase]; }; - edge = derive2 { name="edge"; version="2.2.1"; sha256="1hmk7ncjgb0lwm7964b6c7c425jw3d8cd3zcvrv1k5359wxzfwmc"; depends=[Biobase jackstraw MASS qvalue snm sva]; }; - edgeR = derive2 { name="edgeR"; version="3.12.0"; sha256="1n3fmrms48z7bh1sz64j242f08jg32dp0l25kba60abgypg2f2fw"; depends=[limma]; }; - eiR = derive2 { name="eiR"; version="1.10.1"; sha256="0770rawqw6ys1594f8xpnjjh0p7fav5qmbbq64byzv4hb5ldl7p0"; depends=[BH BiocGenerics ChemmineR DBI digest RCurl RUnit snow snowfall]; }; - eisa = derive2 { name="eisa"; version="1.22.0"; sha256="0p3s6z7s4d165h4w5g1h273626h5j255c0hyjv5dlrdhr4ign7v6"; depends=[AnnotationDbi Biobase BiocGenerics Category DBI genefilter isa2]; }; - ensemblVEP = derive2 { name="ensemblVEP"; version="1.10.2"; sha256="0yhpqpjdr5z9m8khiyl8qh0sh6mqwalv6441qfmyq5wivv1nx2is"; depends=[BiocGenerics Biostrings GenomicRanges VariantAnnotation]; }; - ensembldb = derive2 { name="ensembldb"; version="1.2.2"; sha256="08mj3ccskslwqbnk0yz7s5rdh9vvp2adi7hqbz76w7zbvflfsm1v"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges Rsamtools RSQLite rtracklayer S4Vectors]; }; - epigenomix = derive2 { name="epigenomix"; version="1.10.0"; sha256="03nv36zldpjwbwassn5ca26ibdy7cd148ywp7wd6igqjg2lcgich"; depends=[beadarray Biobase BiocGenerics GenomicRanges IRanges Rsamtools S4Vectors SummarizedExperiment]; }; - epivizr = derive2 { name="epivizr"; version="1.8.1"; sha256="1zgxmck5rry5h6jyi5kvbf4sf8902q21b172r25i1mzyiygqwpvn"; depends=[Biobase GenomeInfoDb GenomicFeatures GenomicRanges httpuv mime OrganismDbi R6 rjson rtracklayer S4Vectors SummarizedExperiment]; }; - erccdashboard = derive2 { name="erccdashboard"; version="1.4.0"; sha256="1fj9wbm5sgshpnq855bq6cf13b9141p6r8gq2053k8p1gvb9gbxi"; depends=[edgeR ggplot2 gplots gridExtra gtools limma locfit MASS plyr QuasiSeq qvalue reshape2 ROCR scales stringr]; }; - erma = derive2 { name="erma"; version="0.2.0"; sha256="1pw5n5m0nis8crzpwd4wbfk7vija5r6r2g6jshc07vd2nya5fxsk"; depends=[Biobase BiocGenerics foreach GenomicFiles GenomicRanges ggplot2 Homo_sapiens rtracklayer S4Vectors shiny]; }; - eudysbiome = derive2 { name="eudysbiome"; version="1.0.0"; sha256="10id5pcs29xsicr9ffpd8rd2fqvj776wgdbn80vvym87gyn3kxxh"; depends=[plyr]; }; - exomeCopy = derive2 { name="exomeCopy"; version="1.16.0"; sha256="09awyyfgs0k639nqrcrbq1k875qlyac1146w4ay6nxgijqy7iv82"; depends=[GenomeInfoDb GenomicRanges IRanges Rsamtools]; }; - exomePeak = derive2 { name="exomePeak"; version="2.2.2"; sha256="03xj0h1cgxzbp2fk830l771jmmcll1bq81xips8hjgng3ywz5m1a"; depends=[GenomicAlignments GenomicFeatures Rsamtools rtracklayer]; }; - explorase = derive2 { name="explorase"; version="1.34.0"; sha256="108p864qq8zh4x7p765ygrdkj4r0vm3s2fmi3scswkhcv3vjcjg3"; depends=[limma rggobi RGtk2]; }; - fCI = derive2 { name="fCI"; version="1.0.0"; sha256="17d592qmyia0j91sx8qlsv5xi3d4akd41rdqz0gsvnsbc5c494qn"; depends=[FNN gtools psych rgl VennDiagram zoo]; }; - fabia = derive2 { name="fabia"; version="2.16.0"; sha256="0fm7bkqydks0qqfiifbkf5i7z8jb9l8bpbwkfy0kw4wfnzn4j7n8"; depends=[Biobase]; }; - facopy = derive2 { name="facopy"; version="1.4.1"; sha256="07ggz86c48rz8asqvfglrvsimnzh3ii43kzpm8ji6sd43i141650"; depends=[annotate cgdsr coin data_table DOSE facopy_annot FactoMineR ggplot2 GO_db GOstats graphite gridExtra igraph IRanges MASS nnet reshape2 Rgraphviz scales]; }; - factDesign = derive2 { name="factDesign"; version="1.46.0"; sha256="0i9aqf0asg0jzvb0ngdyfydgxgwwbxkhmzgc20r8ybjc3rgw0xk6"; depends=[Biobase]; }; - farms = derive2 { name="farms"; version="1.22.0"; sha256="1jmx5rajm6fkhx5gfpwh8nsqw0plhfzy1bibvkdf83arxjjr6s59"; depends=[affy Biobase MASS]; }; - fastLiquidAssociation = derive2 { name="fastLiquidAssociation"; version="1.6.1"; sha256="188jq7g1qy5m05aqsyq51cq56zwf6k3awk3285kx4w3328gr6s2m"; depends=[Hmisc LiquidAssociation WGCNA]; }; - fastseg = derive2 { name="fastseg"; version="1.16.0"; sha256="0js8vf2s8vya0iwd8158agbhzppgicvsnvm5lhyhhg5zs49b71hb"; depends=[Biobase BiocGenerics GenomicRanges IRanges]; }; - fdrame = derive2 { name="fdrame"; version="1.42.0"; sha256="1kqhryvy4wb0c3dj76crlxvgr0h41znh8kn624n51ipfp34n5fgi"; depends=[]; }; - ffpe = derive2 { name="ffpe"; version="1.14.0"; sha256="0vdssf9ljk3x7zhx5x5af5wqhynkaz8pb6sr8zp6ihqfiw498r0q"; depends=[affy Biobase BiocGenerics lumi methylumi sfsmisc TTR]; }; - flagme = derive2 { name="flagme"; version="1.26.0"; sha256="1h9aa6s1r2g6sr81aslqq6jydyn98j9bbcy5q7dp9zf4agfd2n8h"; depends=[CAMERA gcspikelite gplots MASS SparseM xcms]; }; - flipflop = derive2 { name="flipflop"; version="1.8.0"; sha256="1blqi39kmyy2zq6lb42nk30dcc0ivgqf8hifvil2j4iv650i5476"; depends=[GenomicRanges IRanges Matrix]; }; - flowBeads = derive2 { name="flowBeads"; version="1.8.0"; sha256="0nshbwv0wma33di9q1cih4kvfsfwvzwj0nd6qymq6zvxijl57231"; depends=[Biobase flowCore knitr rrcov xtable]; }; - flowBin = derive2 { name="flowBin"; version="1.6.0"; sha256="0icz00h87gmwl04kbbjkrsr2k6d8migkcgcld8hag23bspdfphrl"; depends=[BiocGenerics class flowCore flowFP limma snow]; }; - flowCHIC = derive2 { name="flowCHIC"; version="1.4.0"; sha256="0j7kvlc6l6cigz88r4jxws04xs628j272crvihh4fgklp83jqyr7"; depends=[EBImage flowCore ggplot2 hexbin vegan]; }; - flowCL = derive2 { name="flowCL"; version="1.8.0"; sha256="064946w944gw7l0hizw974i21cahzvfj1xza8f7ay9rx2baz28sh"; depends=[Rgraphviz SPARQL]; }; - flowClean = derive2 { name="flowClean"; version="1.6.0"; sha256="0ck0fqbx7zrj56nn4c30qgbn5rncqch8kcc6dra6nxib9p9hy0db"; depends=[bit changepoint flowCore sfsmisc]; }; - flowClust = derive2 { name="flowClust"; version="3.8.0"; sha256="1w2a9ls1cyvfwx8b7vcmxxzyj1crdpyifqld99lcwcnz5g6cw9cj"; depends=[Biobase BiocGenerics clue corpcor ellipse flowCore flowViz graph MCMCpack mnormt RBGL]; }; - flowCore = derive2 { name="flowCore"; version="1.36.9"; sha256="0fzjc76p6d7w4rl57qc7vqc6bn9f6xy8dvdgrdh6hksqxrdxgl3a"; depends=[BH Biobase BiocGenerics corpcor graph matrixStats Rcpp rrcov]; }; - flowCyBar = derive2 { name="flowCyBar"; version="1.6.0"; sha256="0j9hdcgkh1glfyxa9wcwpdxrkn3vgfns7w15xp341m2c4lf7rq7s"; depends=[gplots vegan]; }; - flowDensity = derive2 { name="flowDensity"; version="1.4.0"; sha256="1gr9rd3brxqpg3dzgsrvrz104lvzcs8kf50zbx2nh22viyv1kmfp"; depends=[car flowCore GEOmap gplots RFOC]; }; - flowFP = derive2 { name="flowFP"; version="1.28.0"; sha256="0sa17dnn2x1wq4mk719nbfpabjslyv8aafc8i0g09dlb9zm303q7"; depends=[Biobase BiocGenerics flowCore flowViz]; }; - flowFit = derive2 { name="flowFit"; version="1.8.0"; sha256="1fja1d5irh71a3rqdsbw5sb14ss2xmird6vxcps96r6s6rz2bra3"; depends=[flowCore flowViz gplots kza minpack_lm]; }; - flowMap = derive2 { name="flowMap"; version="1.8.0"; sha256="0rkdspl9lnasc8axlsx076g14pkgwrlz9nbxy0f1z67w991d823p"; depends=[abind ade4 doParallel Matrix reshape2 scales]; }; - flowMatch = derive2 { name="flowMatch"; version="1.6.0"; sha256="121a6khppgrdim1g5yi67s74npgvg73qb741x9gry5zz4q0z70fq"; depends=[Biobase flowCore Rcpp]; }; - flowMeans = derive2 { name="flowMeans"; version="1.30.0"; sha256="08dvpfvpqp99lm1lj5fryqqmskgqpx58m62n96ff319wzxmf1ass"; depends=[Biobase feature flowCore rrcov]; }; - flowMerge = derive2 { name="flowMerge"; version="2.18.0"; sha256="109rx6pyyvc451rl31lb6qxajmsml2jsp81dd2d3shv1zdc3jj2c"; depends=[feature flowClust flowCore foreach graph Rgraphviz rrcov snow]; }; - flowPeaks = derive2 { name="flowPeaks"; version="1.12.0"; sha256="1wm24xdzlbrr1j676h5padc87b9qz8x54zp2lkfag4g6iqbgflyg"; depends=[]; }; - flowPlots = derive2 { name="flowPlots"; version="1.18.0"; sha256="14mnkzyszmzl4wdc8g2b9m53h5k2b7mcm23xqldnxx88w4jqc66q"; depends=[]; }; - flowQ = derive2 { name="flowQ"; version="1.30.0"; sha256="1yz0w0bpv98l319y8dw82qaykg6w70sxpzmhxdckwdqjpixq5sf5"; depends=[BiocGenerics bioDist flowCore flowViz geneplotter IRanges lattice latticeExtra mvoutlier outliers parody RColorBrewer]; }; - flowQB = derive2 { name="flowQB"; version="1.14.0"; sha256="1swsdqra8w8z27p2mv1q37ydak7rjifxm78h5x6mhv1vfq4faz12"; depends=[Biobase flowCore MASS]; }; - flowStats = derive2 { name="flowStats"; version="3.28.1"; sha256="1i9x94qk4cq1fkix9r2qn34k74v2i732ldj2s68ynqniyvsj6vdb"; depends=[Biobase BiocGenerics cluster fda flowCore flowViz flowWorkspace KernSmooth ks lattice MASS mvoutlier]; }; - flowTrans = derive2 { name="flowTrans"; version="1.22.0"; sha256="0rqg12avmpr169i3jd1rd1ncpzkplm840nhv9h0gcqirai70pqhc"; depends=[flowClust flowCore flowViz]; }; - flowType = derive2 { name="flowType"; version="2.8.1"; sha256="1ck940f18s89h8iqbkspibykr68473vb93graah3gqn7svw6970g"; depends=[BH Biobase flowClust flowCore flowMeans flowMerge Rcpp rrcov sfsmisc]; }; - flowUtils = derive2 { name="flowUtils"; version="1.34.0"; sha256="0qba66cfsy8facvdpnl5jf71xwaqs3w6j2z0ph7c39zyng0nibwp"; depends=[Biobase corpcor flowCore flowViz graph RUnit XML]; }; - flowVS = derive2 { name="flowVS"; version="1.2.0"; sha256="0hls6c9s3h470hzayfd1k9vn5v146cymfp2b20hzjyc6dg20fj2s"; depends=[flowCore flowStats flowViz]; }; - flowViz = derive2 { name="flowViz"; version="1.34.1"; sha256="1ggy8lgkf2j00l8cg4mijg9yydxr4gmfnby0ngiynk94h3i68z94"; depends=[Biobase flowCore hexbin IDPmisc KernSmooth lattice latticeExtra MASS RColorBrewer]; }; - flowWorkspace = derive2 { name="flowWorkspace"; version="3.16.15"; sha256="1pydk53x2myb97lfyc5wkynbwxb23p519m0krcq3g77n2baa9567"; depends=[BH Biobase BiocGenerics data_table dplyr flowCore flowUtils flowViz graph gridExtra jsonlite lattice latticeExtra ncdfFlow RBGL RColorBrewer Rcpp Rgraphviz stringr XML]; }; - flowcatchR = derive2 { name="flowcatchR"; version="1.4.0"; sha256="0rd9sg3d17ihrm4zz4jpvv3n4xcz4djcfnsvx6qzkri2vjmk7spj"; depends=[abind BiocParallel colorRamps EBImage rgl]; }; - fmcsR = derive2 { name="fmcsR"; version="1.12.2"; sha256="1mv6ds20m9b0b2326cxy486kri2fa40lm23ck2sx1vf6lsnfh6g6"; depends=[BiocGenerics ChemmineR RUnit]; }; - focalCall = derive2 { name="focalCall"; version="1.4.0"; sha256="1dqk0lda24lkhfsid15c6n121s63zbk6658za5qxqkxdd82z7axf"; depends=[CGHcall]; }; - frma = derive2 { name="frma"; version="1.22.0"; sha256="0j4zxxmmgd9jq9g7if7y0i7fkiynfikkll05p14h2jrmn2ywimdm"; depends=[affy Biobase BiocGenerics DBI MASS oligo oligoClasses preprocessCore]; }; - frmaTools = derive2 { name="frmaTools"; version="1.22.0"; sha256="1lxjr8yzi2hna5yygyaqxr5fqxfis4k3aczljlpm86mp8r6f80qa"; depends=[affy Biobase DBI preprocessCore]; }; - gCMAP = derive2 { name="gCMAP"; version="1.14.0"; sha256="09dcaq0763kb399wh232n6r1s8qkj0c4zcmpjp6cz08w6n7lchgx"; depends=[annotate AnnotationDbi Biobase Category DESeq genefilter GSEABase GSEAlm limma Matrix]; }; - gCMAPWeb = derive2 { name="gCMAPWeb"; version="1.10.0"; sha256="00qx90gycqqca8b3brkl0bkckn7saqz9z38vinhjxlyaanc9v6ml"; depends=[annotate AnnotationDbi Biobase BiocGenerics brew gCMAP GSEABase hwriter Rook yaml]; }; - gQTLBase = derive2 { name="gQTLBase"; version="1.2.1"; sha256="1a1ndjjp2zn1lsfahpvi3xhkdgwl5wk0bdm7kc92aidq50a2db42"; depends=[BatchJobs BBmisc BiocGenerics bit doParallel ff ffbase foreach GenomicFiles GenomicRanges rtracklayer S4Vectors]; }; - gQTLstats = derive2 { name="gQTLstats"; version="1.2.0"; sha256="1cwri36z85zyyr48dkkl7qkgbx9fpv7y38mbbm470adc7ac56zbv"; depends=[AnnotationDbi BatchJobs Biobase BiocGenerics doParallel dplyr ffbase foreach gam GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gQTLBase IRanges limma reshape2 S4Vectors snpStats SummarizedExperiment VariantAnnotation]; }; - gaga = derive2 { name="gaga"; version="2.16.0"; sha256="198521xnznvwg8k5l6pak3jcyp9ml3hbzjk10vdj926izslnfavw"; depends=[Biobase coda EBarrays mgcv]; }; - gage = derive2 { name="gage"; version="2.20.1"; sha256="08lq8j07c855v54xia97ykkd81307xyh30lbcwv7by5grnkrxqbp"; depends=[AnnotationDbi graph KEGGREST]; }; - gaggle = derive2 { name="gaggle"; version="1.38.0"; sha256="0bl60nca27rkij061h6g16ddlkq29rb1wh5pr2hz87y74pmb8m2w"; depends=[graph rJava RUnit]; }; - gaia = derive2 { name="gaia"; version="2.14.0"; sha256="099imzsa7pghp7qbxjjnfrqc8zkn25wm5xj9jn40m9as11zxdrsx"; depends=[]; }; - gaucho = derive2 { name="gaucho"; version="1.6.0"; sha256="1c1aaidhdv9rr2v3q6832q0ajc3g7l4gfx1rhf27kv4pn1j5s23s"; depends=[GA graph heatmap_plus png Rgraphviz]; }; - gcatest = derive2 { name="gcatest"; version="1.0.0"; sha256="1kjz7msk59y4vdhm9wi25yia5d4glgpdrd7ykl3fb5sz83vggmw1"; depends=[lfa]; }; - gcrma = derive2 { name="gcrma"; version="2.42.0"; sha256="1bzrr6q9m8i6316iamx10fk9y06yv628m8prsn5fhggjawyzp6di"; depends=[affy affyio Biobase BiocInstaller Biostrings XVector]; }; - gdsfmt = derive2 { name="gdsfmt"; version="1.6.2"; sha256="104r6wl5vwncq38gd93sjzwkqlxqkr60qq300rmwk14p288fr9kh"; depends=[]; }; - geNetClassifier = derive2 { name="geNetClassifier"; version="1.10.0"; sha256="183aa5mzdm97rxzpcy0m93ywm7p5xvv38lsly6mb6y0afc3slfb4"; depends=[Biobase e1071 EBarrays minet]; }; - geecc = derive2 { name="geecc"; version="1.4.0"; sha256="00dkp4ldnpadvw6fdva0gg0m843j7i667r0i33c9dsrjfc7k7z8q"; depends=[gplots hypergea MASS]; }; - genArise = derive2 { name="genArise"; version="1.46.0"; sha256="1a85r7lbbz090k2kiza97b18vh4gn01wqp7qs8a8skxina6qsig6"; depends=[locfit tkrplot xtable]; }; - geneRecommender = derive2 { name="geneRecommender"; version="1.42.0"; sha256="0823w9haab5wc06rk9853l07vgwpzxpivh84y3av6mhfn36lz0id"; depends=[Biobase]; }; - geneRxCluster = derive2 { name="geneRxCluster"; version="1.6.0"; sha256="1blkzf503bfdfvbagbk41167qkd05mdxd96lav5fz1ry780i8lb7"; depends=[GenomicRanges IRanges]; }; - genefilter = derive2 { name="genefilter"; version="1.52.1"; sha256="1pl1vbxfajms26734iprqlb4w1ly2w5101z8d895znc4lfbp6mvs"; depends=[annotate AnnotationDbi Biobase survival]; }; - genefu = derive2 { name="genefu"; version="2.2.0"; sha256="0q49hnxz59hack7j28haazia6qd5pkmgyq5jaypvaa3jnvcsfij7"; depends=[AIMS amap biomaRt iC10 mclust survcomp]; }; - geneplotter = derive2 { name="geneplotter"; version="1.48.0"; sha256="13ivmp486m1ka0ww3kdg5k5czps9plnrn9p6maq2gdq8dlkgvdly"; depends=[annotate AnnotationDbi Biobase BiocGenerics lattice RColorBrewer]; }; - genoCN = derive2 { name="genoCN"; version="1.22.0"; sha256="0irc6cwlaf71g76vrijw6z499aiw0h8mll0521cc12hs4wq9060z"; depends=[]; }; - genomation = derive2 { name="genomation"; version="1.2.2"; sha256="0kvzwc21zsh2c8d34yn935ncn38bfkpzmknycd8h7b0521x20mi9"; depends=[Biostrings BSgenome data_table GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridBase impute IRanges matrixStats plotrix plyr readr reshape2 Rsamtools rtracklayer seqPattern]; }; - genomeIntervals = derive2 { name="genomeIntervals"; version="1.26.0"; sha256="0fnxrxb1lk59608kcpc19yxrz3all346qh7rs668f3kk7hj456gb"; depends=[BiocGenerics GenomeInfoDb GenomicRanges intervals IRanges S4Vectors]; }; - genomes = derive2 { name="genomes"; version="2.16.1"; sha256="1wcb1x0srfk36r70xn80fka33942c4jn0qq1rhg375m9bqmrwj84"; depends=[Biostrings GenomicRanges IRanges RCurl XML]; }; - genoset = derive2 { name="genoset"; version="1.24.0"; sha256="0xxh23sdb5qjfh97a2psp70zb54zx40x8501bpp7gzgqbfn1wf7w"; depends=[Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; - genotypeeval = derive2 { name="genotypeeval"; version="1.0.0"; sha256="1clljhqy57yy0ss9700zfnsgnby3dism8z2682xjhzzprg049cx4"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges ggplot2 IRanges rtracklayer VariantAnnotation]; }; - gespeR = derive2 { name="gespeR"; version="1.2.0"; sha256="0s8lndwwqkkkiyqzi8xpqz6clzjrkmkkrh2f1ch80hvfj83rb89d"; depends=[Biobase biomaRt cellHTS2 doParallel dplyr foreach ggplot2 glmnet Matrix reshape2]; }; - ggbio = derive2 { name="ggbio"; version="1.18.5"; sha256="0pj0v4frj9dhyyq5mb8vls1dnlv1lvah9csrg9rz33x61px7iplq"; depends=[Biobase BiocGenerics Biostrings biovizBase BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GGally ggplot2 gridExtra gtable Hmisc IRanges OrganismDbi reshape2 Rsamtools rtracklayer S4Vectors scales SummarizedExperiment VariantAnnotation]; }; - ggtree = derive2 { name="ggtree"; version="1.2.17"; sha256="1r0zxwab7pp5zhxgcpir24kzwv2vgw1fm04wqbfy2in3pj2phr64"; depends=[ape Biostrings ggplot2 jsonlite magrittr tidyr]; }; - girafe = derive2 { name="girafe"; version="1.22.0"; sha256="1l7vdfrvr0y0l1lwnsyzkbx8p35rkmxnnclfqqqailhy5q5prjp2"; depends=[Biobase BiocGenerics Biostrings genomeIntervals intervals IRanges Rsamtools S4Vectors ShortRead]; }; - globaltest = derive2 { name="globaltest"; version="5.24.0"; sha256="0a1q8r581vq4srpy57ixbcnb87ajiazj5dzyswyjfhs2l9z5zhdq"; depends=[annotate AnnotationDbi Biobase survival]; }; - gmapR = derive2 { name="gmapR"; version="1.12.0"; sha256="1zzhy2cmqg0npyc6zilsjb8dn48dyva7xb8b7d6czgwb4rvyrsrr"; depends=[Biobase BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; - goProfiles = derive2 { name="goProfiles"; version="1.32.0"; sha256="0knflwy6yarkp5r3l5q14pkcmbwpivgylfd33a8xwn3w87qk9gxw"; depends=[AnnotationDbi Biobase GO_db]; }; - goTools = derive2 { name="goTools"; version="1.44.0"; sha256="0sq4l1ayh65x7b0spmffxqx68cll8wgbj30cp0ylnyb6s78whr6q"; depends=[AnnotationDbi GO_db]; }; - goseq = derive2 { name="goseq"; version="1.22.0"; sha256="0zfly8fl77s59j6sdgn4c0gfwwsm1q8r57pf4h6zgxnbahll2b10"; depends=[AnnotationDbi BiasedUrn BiocGenerics geneLenDataBase GO_db mgcv]; }; - gpls = derive2 { name="gpls"; version="1.42.0"; sha256="1a8qhyyidx3rnipjr42q2jzgcjljij2g6a22dlk9p350sf426i0f"; depends=[]; }; - gprege = derive2 { name="gprege"; version="1.14.0"; sha256="0mc8x8faj8pf8zb3mywjscn2rzs7bc0ws507a32r7zl5j8p9rzag"; depends=[gptk]; }; - graph = derive2 { name="graph"; version="1.48.0"; sha256="16w75rji3kv24gfv44w66y1a2y75ax26rl470y3ypna0ndc3rrcd"; depends=[BiocGenerics]; }; - graphite = derive2 { name="graphite"; version="1.16.0"; sha256="19dzzmy3jm555iz3wn6m0izn7xpl66q1rfngfcyg3czz266x4kv4"; depends=[AnnotationDbi BiocGenerics graph rappdirs]; }; - groHMM = derive2 { name="groHMM"; version="1.4.1"; sha256="0ndbdn2jqnyla7malppza9f92x7wybbg0n7lfl1ydwx53mwndpz6"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS rtracklayer S4Vectors]; }; - gtrellis = derive2 { name="gtrellis"; version="1.2.0"; sha256="00alv9amhwgcpzy8g2av46r183070nansvswai0m9ppd4rhc53zh"; depends=[circlize GetoptLong]; }; - gwascat = derive2 { name="gwascat"; version="2.2.0"; sha256="06v3rc21riv53qpvaizsbrsi5zdmz1fzjhbjf741wkgbh280g6gl"; depends=[AnnotationDbi AnnotationHub BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 gQTLstats graph Gviz Homo_sapiens IRanges Rsamtools rtracklayer S4Vectors snpStats VariantAnnotation]; }; - h5vc = derive2 { name="h5vc"; version="2.4.1"; sha256="17d5y6hzwjmj9dayrdss0shjqkphv12p70s8g7052q6sljx8iwc2"; depends=[abind BatchJobs BiocParallel Biostrings GenomeInfoDb GenomicRanges ggplot2 gridExtra h5vcData IRanges reshape rhdf5 Rsamtools S4Vectors]; }; - hapFabia = derive2 { name="hapFabia"; version="1.12.0"; sha256="019fsyc3a2myxapjk2wx978q9jkhsz2889rkvs7vb0aqf8bg0psr"; depends=[Biobase fabia]; }; - hiAnnotator = derive2 { name="hiAnnotator"; version="1.4.0"; sha256="0i4bxzxvqll1n5ardclkfg70hijy3mv4la90g4y6ycl66q0mycrn"; depends=[BSgenome dplyr foreach GenomicRanges ggplot2 iterators rtracklayer scales]; }; - hiReadsProcessor = derive2 { name="hiReadsProcessor"; version="1.6.0"; sha256="1cszyap1cngrfx59mf76826iiwahlhj2l6iv97470nmx5a9rymkh"; depends=[BiocGenerics BiocParallel Biostrings dplyr GenomicAlignments GenomicRanges hiAnnotator rSFFreader sonicLength xlsx]; }; - hierGWAS = derive2 { name="hierGWAS"; version="1.0.0"; sha256="0hff1vi86mh0nqgld206bp18swzxnrkr5miagnmbr0v7ayh70lxb"; depends=[fastcluster fmsb glmnet]; }; - hopach = derive2 { name="hopach"; version="2.30.0"; sha256="0yggs5f425g5q04lwischjilzl0q8dsnfaf5hk078h0fzpm4j3vs"; depends=[Biobase BiocGenerics cluster]; }; - hpar = derive2 { name="hpar"; version="1.12.0"; sha256="0dmzn44lh6mfdpxfqvz3jp0q8xx9j6y8nqqp9xw3wp2ahf3p30k7"; depends=[]; }; - htSeqTools = derive2 { name="htSeqTools"; version="1.16.0"; sha256="1bjbagx6s66fiia71n7ljg5rfc2v22bbp2sk718mf1i9i38c58lm"; depends=[Biobase BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges MASS]; }; - hyperdraw = derive2 { name="hyperdraw"; version="1.22.0"; sha256="1axxdll3mfnslgx6a1b6kfjvimbkgna73qmpvz8aslhihry7c7hi"; depends=[graph hypergraph Rgraphviz]; }; - hypergraph = derive2 { name="hypergraph"; version="1.42.0"; sha256="1z2x22xm7609sjma54i48f5fax0fm56mjmzqk55p5x3jyq53j0jw"; depends=[graph]; }; - iASeq = derive2 { name="iASeq"; version="1.14.0"; sha256="0l3vzbin04sb3z0zzgzbp68clp23cg3pyid9aj3p67z38gy42024"; depends=[]; }; - iBBiG = derive2 { name="iBBiG"; version="1.14.0"; sha256="13z2i2yp7bxn8v8in3nrw3blj2dd4kcf1hjawww1yzl1q8zasxx2"; depends=[ade4 biclust xtable]; }; - iBMQ = derive2 { name="iBMQ"; version="1.10.0"; sha256="1hdzqz19akdsmswspq13n99magn8v4r7zlb684hljnr05jbczrcp"; depends=[Biobase ggplot2]; }; - iCheck = derive2 { name="iCheck"; version="1.0.0"; sha256="1bhnbiwihln9xbl0s4lp70y6qcc1i3hm4n34dndx5frwnm8g1zc2"; depends=[affy Biobase GeneSelectMMD gplots limma lmtest lumi MASS preprocessCore randomForest rgl scatterplot3d vsn]; }; - iChip = derive2 { name="iChip"; version="1.24.0"; sha256="09vx2sz88gii3d0wi0sf3m1hi7i2737mp2xzawchdh9pr9i7p2qw"; depends=[limma]; }; - iClusterPlus = derive2 { name="iClusterPlus"; version="1.6.0"; sha256="1a0a6pyv10fy7hhfsar14wrwqzj4dd1qlcvgkc4cs3sbrns2gjw2"; depends=[]; }; - iGC = derive2 { name="iGC"; version="1.0.0"; sha256="091bm1qssl8ngiv9cbl6i7mdgi65l1ywk5a78jl01j414h190bra"; depends=[data_table plyr]; }; - iPAC = derive2 { name="iPAC"; version="1.14.0"; sha256="1gzxv6jkn7crylklmnvhm86gczmsr80dmw1a7flaisiiy40k128g"; depends=[Biostrings gdata multtest scatterplot3d]; }; - iSeq = derive2 { name="iSeq"; version="1.22.0"; sha256="1bh2s5cc7jsz1gdh0f5f09izm3b2pjmzbhmr0vyp1b9nc12i35v9"; depends=[]; }; - ibh = derive2 { name="ibh"; version="1.18.0"; sha256="0damqv5bn9fyki7ghqflz8bzg42v3wf1gi173adk9hpj9glic73j"; depends=[simpIntLists]; }; - idiogram = derive2 { name="idiogram"; version="1.46.0"; sha256="154hrvq86bm8f51mbgzfzg3gjyzzlnsl3yfmqglk78smj2a152lf"; depends=[annotate Biobase plotrix]; }; - illuminaio = derive2 { name="illuminaio"; version="0.12.0"; sha256="1mjgs1kf4wzb3zvqyq4w81sqrb4nrf6qwdlg6hz471xh6c3b7avb"; depends=[base64]; }; - imageHTS = derive2 { name="imageHTS"; version="1.20.0"; sha256="1dg8cmrnzlv2qm5lf9771fiir5l0cql6pmfmv0l3037wisdgz1jw"; depends=[Biobase cellHTS2 e1071 EBImage hwriter vsn]; }; - immunoClust = derive2 { name="immunoClust"; version="1.2.0"; sha256="1hgla6chdpbc3yk8k5i8pzkxr17clirpcihp5gczr9xnqx9k8i2h"; depends=[flowCore lattice]; }; - impute = derive2 { name="impute"; version="1.44.0"; sha256="0y4x5jk7gsf4xn56jrkdcdnxpcfll4h6ivncd7n4snmzixldvmvw"; depends=[]; }; - inSilicoDb = derive2 { name="inSilicoDb"; version="2.6.0"; sha256="1avxm8qm9rblck94v0aq0na70jfl2cyr9xmbbk27n5hgp1cnaizf"; depends=[Biobase RCurl rjson]; }; - inSilicoMerging = derive2 { name="inSilicoMerging"; version="1.14.0"; sha256="1xiq66b0vjrcxf4nbmk5mmn1dlxbpa879z04f00w3yz1k7rx6782"; depends=[Biobase]; }; + ABAEnrichment = derive2 { name="ABAEnrichment"; version="1.2.2"; sha256="1jb88iwgp80i3ir1509chr7cjrjvk92a2d5hcdyl0vg9b0qxymbj"; depends=[ABAData gplots Rcpp]; }; + ABSSeq = derive2 { name="ABSSeq"; version="1.8.1"; sha256="099z80h097sf0slj3m29nfdmn1a5p3b0c7sgh1wfnm6dg6y7g26k"; depends=[limma locfit]; }; + ABarray = derive2 { name="ABarray"; version="1.40.0"; sha256="1qylnf9x8hihc9g64xpcb6jrphysmlg61aa14jd3afjak3xh52g4"; depends=[Biobase multtest]; }; + ACME = derive2 { name="ACME"; version="2.28.0"; sha256="0l56y211r9i50gksv7bm7jzdpk8b3dmc83vkpd5xfnbigdfn7al4"; depends=[Biobase BiocGenerics]; }; + ADaCGH2 = derive2 { name="ADaCGH2"; version="2.12.0"; sha256="0ndgqrg0d02yx9ykgqss9n21dfmldfmgx1hpfj9bmsblyf074gxm"; depends=[aCGH bit cluster DNAcopy ff ffbase GLAD snapCGH tilingArray waveslim]; }; + AGDEX = derive2 { name="AGDEX"; version="1.20.0"; sha256="0j1n9r8xagb5wrwhs7sdmvzg2vz9nwl9rf3214kq87hgwbkqn64m"; depends=[Biobase GSEABase]; }; + AIMS = derive2 { name="AIMS"; version="1.4.0"; sha256="1sq9gwsmvrq4fdhh5p9wwrikrhgpzw5pv07ncvmirpkhh0qi50l6"; depends=[Biobase e1071]; }; + ALDEx2 = derive2 { name="ALDEx2"; version="1.4.0"; sha256="0vhsfa7asfd8rwvi9z1g0wjsx91dldfhisa6a447wahb7m73cs4y"; depends=[GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; + ARRmNormalization = derive2 { name="ARRmNormalization"; version="1.12.0"; sha256="1y79fll7jxw8h80h0zld0ys4an23f0f86phl8r40kbxlk002mpsq"; depends=[ARRmData]; }; + ASEB = derive2 { name="ASEB"; version="1.16.0"; sha256="0g2qsmqmsk1ka4mvf2qkh9pxdi0xm1n7csqhwsfbmlmv3za0zkdy"; depends=[]; }; + ASGSCA = derive2 { name="ASGSCA"; version="1.6.0"; sha256="0y1gq5xii5p5m0x19xmbs00hlc68zgw7nqnpxkk3jf8g995gvsvb"; depends=[MASS Matrix]; }; + ASSET = derive2 { name="ASSET"; version="1.10.0"; sha256="0yb1ps4cwb36zr6f3na3wp6v6l0wi1x1hqck4irzpwmlh7vazkqj"; depends=[MASS msm mvtnorm rmeta tmvnsim]; }; + ASSIGN = derive2 { name="ASSIGN"; version="1.8.0"; sha256="18pdw43ibbhqf25z1vcm34gpyxwxm96d28clqp8grq50zr60n9ii"; depends=[gplots msm Rlab]; }; + AffyCompatible = derive2 { name="AffyCompatible"; version="1.32.0"; sha256="15cg6jbmn7fq89cmmfkwykmxqrz8fvq59ip691ai93n18js8hzwf"; depends=[Biostrings RCurl XML]; }; + AffyExpress = derive2 { name="AffyExpress"; version="1.38.0"; sha256="1kq17y9864d94pvpw9hvrrl8s8fh9c7sd6cf4cykzj34729k6xm1"; depends=[affy limma]; }; + AffyRNADegradation = derive2 { name="AffyRNADegradation"; version="1.18.0"; sha256="1p8j3286ix36sckzrw726q7nsxivcgxggkmp76vmrd6l0a67bz75"; depends=[affy]; }; + AffyTiling = derive2 { name="AffyTiling"; version="1.29.0"; sha256="0s5hrlzzxpyw52lpp7xq7vd5wds5ymph2gav4mhbbplvism7wnjz"; depends=[affxparser affy preprocessCore]; }; + AgiMicroRna = derive2 { name="AgiMicroRna"; version="2.22.0"; sha256="1fkl1rnj9pj654pdjfs2k6r74yvpbm331gf9cdcsq3baafygv48z"; depends=[affy affycoretools Biobase limma preprocessCore]; }; + AllelicImbalance = derive2 { name="AllelicImbalance"; version="1.10.2"; sha256="09p2z1vh7hq7fkfz49n7c8yfsji66p6dry5dmi6b6gm22fj5q7f2"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gridExtra Gviz IRanges lattice latticeExtra Rsamtools S4Vectors seqinr SummarizedExperiment VariantAnnotation]; }; + AnalysisPageServer = derive2 { name="AnalysisPageServer"; version="1.6.2"; sha256="0fws4b2cln0i9fn5cnvggjk86y2mcbzvd1r5gfs8idjsm79mzaxn"; depends=[Biobase graph log4r rjson]; }; + AneuFinder = derive2 { name="AneuFinder"; version="1.0.3"; sha256="1a0kaxd65r9453cx8jw5y2zvybqxjlyw68x3vn0kvgz6pv84dwq1"; depends=[AneuFinderData BiocGenerics Biostrings cowplot doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggdendro ggplot2 IRanges mclust preseqR ReorderCluster reshape2 Rsamtools S4Vectors]; }; + AnnotationDbi = derive2 { name="AnnotationDbi"; version="1.34.4"; sha256="1k3gfsjrivc7467vg0h705hh4dvzgdhknz62j7zmfxm67qk9r8rq"; depends=[Biobase BiocGenerics DBI IRanges RSQLite S4Vectors]; }; + AnnotationForge = derive2 { name="AnnotationForge"; version="1.14.2"; sha256="1vkdd1qdv5g680ipw4vwjvn52xn66xpg6ngmwyknz77ckxnnpf4q"; depends=[AnnotationDbi Biobase BiocGenerics DBI RSQLite S4Vectors XML]; }; + AnnotationFuncs = derive2 { name="AnnotationFuncs"; version="1.22.0"; sha256="1mc2y5ra8cmbmr10vnywx4hjdklrq3ihwl9m11g2vaqylwy7gh1c"; depends=[AnnotationDbi DBI]; }; + AnnotationHub = derive2 { name="AnnotationHub"; version="2.4.2"; sha256="1jjl1q5wgwfjhrm96c7wh0w8dpaxzqy9wjisy3pmg483vg0960y4"; depends=[AnnotationDbi BiocGenerics BiocInstaller httr interactiveDisplayBase RSQLite S4Vectors]; }; + AnnotationHubData = derive2 { name="AnnotationHubData"; version="1.2.2"; sha256="1h9qljbyjg2qgxx9knwwyfiy0kw7wp2k281hxzq66c24idp3kkrl"; depends=[AnnotationDbi AnnotationForge AnnotationHub Biobase BiocGenerics BiocInstaller Biostrings curl DBI futile_logger GenomeInfoDb GenomicFeatures GenomicRanges GEOquery httr IRanges jsonlite OrganismDbi rBiopaxParser Rsamtools RSQLite rtracklayer S4Vectors XML xml2]; }; + ArrayExpress = derive2 { name="ArrayExpress"; version="1.32.0"; sha256="08fcvhjmpr1fx90qyik12hc3yb3v6i4bvx62xadxm3m2zq52nmgl"; depends=[Biobase limma oligo XML]; }; + ArrayExpressHTS = derive2 { name="ArrayExpressHTS"; version="1.22.1"; sha256="1p5flrkb8xwhw51fjr8zm27qgzm5v10s4kccjajiykiv0v301snh"; depends=[Biobase BiocGenerics biomaRt Biostrings bitops DESeq edgeR GenomicRanges Hmisc IRanges R2HTML RColorBrewer rJava Rsamtools sampling sendmailR ShortRead snow svMisc XML]; }; + ArrayTV = derive2 { name="ArrayTV"; version="1.10.0"; sha256="0vh53xlg4yidmk39rxa0nw2cr12f6mld1vwiq6jba5j51szqm0aw"; depends=[DNAcopy foreach oligoClasses S4Vectors]; }; + ArrayTools = derive2 { name="ArrayTools"; version="1.32.0"; sha256="09cqab10xh052d0932p2y3svspn9lqi1zylkm7kglkksn7j27vih"; depends=[affy Biobase limma xtable]; }; + AtlasRDF = derive2 { name="AtlasRDF"; version="1.8.0"; sha256="1hw5i074cxkwqi4gkb3abqvl9q3wz93s5fvym28id63qsmpdssl9"; depends=[hash SPARQL]; }; + BAC = derive2 { name="BAC"; version="1.32.0"; sha256="07f8vcbdqlq4i0b6xqrlf6fr3zj8kbbjssc3pf9gy2s0kf1da6p0"; depends=[]; }; + BADER = derive2 { name="BADER"; version="1.10.0"; sha256="1ibcchi6qgd49m4kjz3dx8nc31nkg5bjw8g5w5ih05pki0gl4219"; depends=[]; }; + BAGS = derive2 { name="BAGS"; version="2.12.0"; sha256="1krnkamjxk71lxmm1n1zg8c2agv4w0xksz3gngpjjgzcybfnnn2i"; depends=[Biobase breastCancerVDX]; }; + BBCAnalyzer = derive2 { name="BBCAnalyzer"; version="1.2.0"; sha256="0q8kj2gp0j6xrmgq1zd1230hddiy139qrdrz64m2nab5avn1fmlm"; depends=[Biostrings GenomicRanges IRanges Rsamtools SummarizedExperiment VariantAnnotation]; }; + BCRANK = derive2 { name="BCRANK"; version="1.34.0"; sha256="0y6dj26qd6a3jm7lp0jcdkpvdc4jq3gp11mvv1ix724zasb57k3d"; depends=[Biostrings]; }; + BEAT = derive2 { name="BEAT"; version="1.10.0"; sha256="0v7hl5v84bn2iik89j4wsq9vnnr392n4h2x2n8x9fdips2bjpq3w"; depends=[Biostrings BSgenome GenomicRanges ShortRead]; }; + BEclear = derive2 { name="BEclear"; version="1.4.0"; sha256="17p4g4gh6vnnymsrhfh1xhjj4ahm0dilapnlh4mf883x9q8acbda"; depends=[Matrix snowfall]; }; + BGmix = derive2 { name="BGmix"; version="1.32.0"; sha256="1z0i0h43din2659yzzjx10bzmbak5nwrbgnab4ifq8hq6sgxyzg2"; depends=[KernSmooth]; }; + BHC = derive2 { name="BHC"; version="1.24.0"; sha256="0v906vnh5ph1srr1s5i4cbplkyqfim6fmxn0wp290jb0ilkp3ziv"; depends=[]; }; + BRAIN = derive2 { name="BRAIN"; version="1.18.0"; sha256="0iwz6yy164hwy1mqa869y6d1qs69ijx566dfff8mj0ym655pd3rz"; depends=[Biostrings lattice PolynomF]; }; + BSgenome = derive2 { name="BSgenome"; version="1.40.1"; sha256="0zmlzlcwairka59is5wmkh6knh6j4d328z9fsw3v91fx6gavjl2n"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools rtracklayer S4Vectors XVector]; }; + BUS = derive2 { name="BUS"; version="1.28.0"; sha256="1z8l27rsz6zz8d0sga5pwn77iv5pwjgy3zjm8rcc6w3ql86za5m3"; depends=[infotheo minet]; }; + BadRegionFinder = derive2 { name="BadRegionFinder"; version="1.0.0"; sha256="1rxncqjv7bw4f17ra00cq1xp9g72mlj1wc335g5ln7778wiax1g9"; depends=[biomaRt GenomicRanges Rsamtools S4Vectors VariantAnnotation]; }; + BaseSpaceR = derive2 { name="BaseSpaceR"; version="1.16.0"; sha256="1w1n9m5j9mcphvhsdj7dh8awvj1r10zna7dx13b2f280jmglg215"; depends=[RCurl RJSONIO]; }; + Basic4Cseq = derive2 { name="Basic4Cseq"; version="1.8.0"; sha256="0216xhqj4ysscj4lr66vibijrac7kmkmxnqsqcwwxwzqsrk5gh7z"; depends=[Biostrings BSgenome_Ecoli_NCBI_20080805 caTools GenomicAlignments GenomicRanges RCircos]; }; + BasicSTARRseq = derive2 { name="BasicSTARRseq"; version="1.0.2"; sha256="1ryarcvb9cpmgc3yzd7qck46ff2xc417dhnfiwma3gy3gm2g4lyi"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges S4Vectors]; }; + BatchQC = derive2 { name="BatchQC"; version="1.0.22"; sha256="18c675pnah7xc089ny6h8zf4150d9f3ayf5wyxji0zdkvk2gnxjv"; depends=[corpcor d3heatmap ggvis gplots knitr limma matrixStats MCMCpack moments pander reshape2 rmarkdown shiny sva]; }; + BayesPeak = derive2 { name="BayesPeak"; version="1.24.0"; sha256="1m8c6akdi4mw1aj6482s9x8918m2a3d58s0fvvhpwzcppz7yjw33"; depends=[IRanges]; }; + BeadDataPackR = derive2 { name="BeadDataPackR"; version="1.24.2"; sha256="04jviwwx4brbv19kzzw69vjqhprl8sgsghw71gxmp91c6i1pv5a2"; depends=[]; }; + BgeeDB = derive2 { name="BgeeDB"; version="1.0.3"; sha256="0g84hyirg3blbk6vxwjazgvpqzn384i6i01r7fxyqfdyfczprsfp"; depends=[Biobase data_table dplyr graph RCurl tidyr topGO]; }; + BiGGR = derive2 { name="BiGGR"; version="1.8.0"; sha256="15ffri2xdjwqxf7mn6mxk5h9c7m0xkq2di6nlvdwvapwm9945ldq"; depends=[hyperdraw hypergraph LIM rsbml stringr]; }; + BiRewire = derive2 { name="BiRewire"; version="3.2.1"; sha256="0y32y9vfs1sh7lwpkzpsmvgrll3x5l7y8xm3rcxalag17lkfax65"; depends=[igraph Matrix slam tsne]; }; + BiSeq = derive2 { name="BiSeq"; version="1.12.0"; sha256="14gr8dmkpm2wzdwlhrf9gkj9307cxpsap7a0a6bfip2zgrp82414"; depends=[betareg Biobase BiocGenerics Formula GenomeInfoDb GenomicRanges globaltest IRanges lokern rtracklayer S4Vectors SummarizedExperiment]; }; + BicARE = derive2 { name="BicARE"; version="1.30.0"; sha256="0faq2w40ikgrzcf39908icb0kph9sxbrplh86m12xwjwsbfwys47"; depends=[Biobase GSEABase multtest]; }; + BioMVCClass = derive2 { name="BioMVCClass"; version="1.40.0"; sha256="1249q8qpnva9a1wh1q8mi0x2yggbg5kmfkcv75wdbzmc82hkck42"; depends=[Biobase graph MVCClass Rgraphviz]; }; + BioNet = derive2 { name="BioNet"; version="1.32.0"; sha256="0zrfdlqfy18zk6z8a3slg8ksywknjbywr5r90ksyfqmvd869ick2"; depends=[AnnotationDbi Biobase graph igraph RBGL]; }; + BioQC = derive2 { name="BioQC"; version="1.0.0"; sha256="0zqpdfdjlsfm203kva8jfv09rwdwmr47daz1zjj06p1m82bwhg1v"; depends=[Biobase Rcpp]; }; + BioSeqClass = derive2 { name="BioSeqClass"; version="1.30.0"; sha256="1gcy27f9jim5b5q7979pz5m9rbphij0cln4mhvzwmkdwvi2ddyj8"; depends=[Biobase Biostrings class e1071 foreign ipred klaR nnet party randomForest rpart scatterplot3d tree]; }; + Biobase = derive2 { name="Biobase"; version="2.32.0"; sha256="0q4icv9n5rc2qfkv6k1wjhmfcpzcyr8f45m2z3xharbdv912kl1i"; depends=[BiocGenerics]; }; + BiocCaseStudies = derive2 { name="BiocCaseStudies"; version="1.34.0"; sha256="1g4307x962ccvxdb421n3cksrrydglmp0hjhwlqlvfyddmkxmym0"; depends=[Biobase]; }; + BiocCheck = derive2 { name="BiocCheck"; version="1.8.2"; sha256="0bvkhxmr25nb0gkncifbc3x48i5zgls3737g3xais6jx16wd4q35"; depends=[BiocInstaller biocViews codetools devtools graph httr knitr optparse]; }; + BiocGenerics = derive2 { name="BiocGenerics"; version="0.18.0"; sha256="1jjp48vbph09w5bmc7368gjjywsa1lmzfybpiwlypr60b51vlkp6"; depends=[]; }; + BiocInstaller = derive2 { name="BiocInstaller"; version="1.22.3"; sha256="02qkfq6f2b7v9klri6d1nv21r54bywv1zd5x47ka0jhhp946cqpr"; depends=[]; }; + BiocParallel = derive2 { name="BiocParallel"; version="1.6.6"; sha256="1l39zmvhjlvlczrk5wal4y2s4g0b2kmaczgq5biah9qn45y474mw"; depends=[futile_logger snow]; }; + BiocStyle = derive2 { name="BiocStyle"; version="2.0.3"; sha256="06aaj0snj0y3bhhfh7lr949fi6cg7gz6fwf5drdm10ckbs4zp9dk"; depends=[]; }; + Biostrings = derive2 { name="Biostrings"; version="2.40.2"; sha256="153rfws5sdha324p1nv7jp75ip6ny0f62jzhqcvs46l85h3i8zgh"; depends=[BiocGenerics IRanges S4Vectors XVector]; }; + BitSeq = derive2 { name="BitSeq"; version="1.16.0"; sha256="1w585sk92053pwhw1h1qd421rr7s42cm8l8b6mm9cdvrf9095p9r"; depends=[IRanges Rsamtools S4Vectors zlibbioc]; }; + BrainStars = derive2 { name="BrainStars"; version="1.16.0"; sha256="0y6l0c17xlm8q3nbhy21bk2mrbb0a660x6h19q14x01jm58gxwis"; depends=[Biobase RCurl RJSONIO]; }; + BridgeDbR = derive2 { name="BridgeDbR"; version="1.6.0"; sha256="0i5cqyvgyk9yjd8sc8mqrbw0dvkr24hkzlwvw3dn1zk553nwyg98"; depends=[RCurl rJava]; }; + BrowserViz = derive2 { name="BrowserViz"; version="1.4.0"; sha256="15j9cz4x9azn81myjnhckcil24ql3lbf83dfyl33qndszi9aqin4"; depends=[BiocGenerics httpuv jsonlite]; }; + BrowserVizDemo = derive2 { name="BrowserVizDemo"; version="1.4.0"; sha256="1krl88q9z7y2f25p8c9ghr9iyrldgw64xa5za6dv35d7aiihgr9s"; depends=[BiocGenerics BrowserViz httpuv jsonlite Rcpp]; }; + BubbleTree = derive2 { name="BubbleTree"; version="2.2.2"; sha256="1gg1qxvs930lq7f2awpgmfq455306snzvyp4qxx1cm25yklvc0h6"; depends=[Biobase BiocGenerics BiocStyle biovizBase dplyr e1071 GenomicRanges ggplot2 gridExtra gtable gtools IRanges limma magrittr plyr rainbow RColorBrewer WriteXLS]; }; + BufferedMatrix = derive2 { name="BufferedMatrix"; version="1.36.0"; sha256="19yxbw4g4l1gmn14yrr8lmd627f4br5gkgzxpif21gmjvq2iaal1"; depends=[]; }; + BufferedMatrixMethods = derive2 { name="BufferedMatrixMethods"; version="1.36.0"; sha256="00jwgdk1y8is5256q664ph9rhsm4n1pqzrzrbabf9ahq2cm75f96"; depends=[BufferedMatrix]; }; + CAFE = derive2 { name="CAFE"; version="1.8.0"; sha256="13lf4xm55qr8knjh644gb9a610lxxn8b97lkcprjv4n7pbc4vqxp"; depends=[affy annotate Biobase biovizBase GenomicRanges ggbio ggplot2 gridExtra IRanges]; }; + CAGEr = derive2 { name="CAGEr"; version="1.14.0"; sha256="14fkr47hq97wh6a9ig4k4gnybzwvcgf61yqqay4wma0aqi07cd3l"; depends=[beanplot BSgenome data_table GenomicRanges IRanges Rsamtools rtracklayer som VGAM]; }; + CALIB = derive2 { name="CALIB"; version="1.38.0"; sha256="1fb5w9bhwd9n818mrahbv2i6bllgzq2lslzkcybyp3llbrckbigy"; depends=[limma]; }; + CAMERA = derive2 { name="CAMERA"; version="1.28.0"; sha256="02shq9gh2zpj2vkpzyslqzqa5q68lzz6hr07pklj5qldyvgxma52"; depends=[Biobase graph Hmisc igraph RBGL xcms]; }; + CAnD = derive2 { name="CAnD"; version="1.4.0"; sha256="1hmyi76bhjihj7313f9jxcpnmpzs8r59s2prc2in4p1xmj2v26ha"; depends=[ggplot2 reshape]; }; + CFAssay = derive2 { name="CFAssay"; version="1.6.0"; sha256="1ni4hss9m2i8cxjnsslp0s2rlpikd78w3c0x1590l0pqki5kbgbq"; depends=[]; }; + CGEN = derive2 { name="CGEN"; version="3.8.0"; sha256="1zandlkv5fnm4zk6xpakpqbadrc9bgd73716rlwmlxrqqbqhqzdb"; depends=[mvtnorm survival]; }; + CGHbase = derive2 { name="CGHbase"; version="1.32.0"; sha256="1v4h2zlfrb45y80skl3f2hqnzz8gk1k387m7sz2izx33dwfxgdpd"; depends=[Biobase marray]; }; + CGHcall = derive2 { name="CGHcall"; version="2.34.1"; sha256="0vpvlddkihsvhr03m6kvn72p3dl2qd9ncr46va05hrvhgqxr976k"; depends=[Biobase CGHbase DNAcopy impute snowfall]; }; + CGHnormaliter = derive2 { name="CGHnormaliter"; version="1.26.0"; sha256="033ckmn74zhmmy3fi8sbrvb2zzxyzwzmkdyal7djm63rf8f52km1"; depends=[Biobase CGHbase CGHcall]; }; + CGHregions = derive2 { name="CGHregions"; version="1.30.0"; sha256="1lglc0wglckc6c24yzjjc9l86p7i37ag837n75d0h4lv8x1yfzik"; depends=[Biobase CGHbase]; }; + CHRONOS = derive2 { name="CHRONOS"; version="1.0.3"; sha256="1a87shlr88i0ampzayybpnhmzd9k9j05fylb2q6n4ykk1igq5mdy"; depends=[biomaRt circlize doParallel foreach graph openxlsx RBGL RCurl XML]; }; + CINdex = derive2 { name="CINdex"; version="1.0.2"; sha256="1f2gqfj88dlihqw0ba24sygcg7sr7pm91hv7s2jylys3r1013r0f"; depends=[bitops dplyr GenomeInfoDb GenomicRanges gplots gridExtra IRanges png S4Vectors som stringr]; }; + CMA = derive2 { name="CMA"; version="1.30.0"; sha256="03yirnn476as8ml97valczx2ad6a2g22mfp4czg1a3kblw4s3r3k"; depends=[Biobase]; }; + CNAnorm = derive2 { name="CNAnorm"; version="1.18.0"; sha256="0wi76k3qz5zvhqyhx2zabw7baj1pyzi0srynbdws3zdcc2qaks57"; depends=[DNAcopy]; }; + CNEr = derive2 { name="CNEr"; version="1.8.3"; sha256="169pbzm6k1kqy5214s7ka5snmbz98zi515nfjki2crnvr1fjjgxb"; depends=[BiocGenerics Biostrings DBI GenomeInfoDb GenomicAlignments GenomicRanges IRanges readr RSQLite rtracklayer S4Vectors XVector]; }; + CNORdt = derive2 { name="CNORdt"; version="1.14.0"; sha256="0gp0fb1rqjlcxf3sa1miq5abzcmqnpnp62lmb88a6ljkisi2hqnq"; depends=[abind CellNOptR]; }; + CNORfeeder = derive2 { name="CNORfeeder"; version="1.12.0"; sha256="19yggabd3m5afd1lbivhqninfif4ra88nlf3kv4qi6ixvbp685km"; depends=[CellNOptR graph]; }; + CNORfuzzy = derive2 { name="CNORfuzzy"; version="1.14.0"; sha256="052hb464pq3sr513rmn8i12mz6xczfaqd9fax6djfwwdzprva315"; depends=[CellNOptR nloptr]; }; + CNORode = derive2 { name="CNORode"; version="1.14.0"; sha256="07xyqd51pz7ygvya4pvqpapglj82w4fwmra7c7r1yny7lcq7ylh6"; depends=[CellNOptR genalg]; }; + CNPBayes = derive2 { name="CNPBayes"; version="1.2.2"; sha256="1r1spk29zy7sc9kgyh1r2s7awc3hh5rl2c1p5chhik39lpdvmnbs"; depends=[BiocGenerics coda combinat GenomeInfoDb GenomicRanges gtools IRanges matrixStats RColorBrewer Rcpp S4Vectors SummarizedExperiment]; }; + CNTools = derive2 { name="CNTools"; version="1.28.0"; sha256="1iwgcphdcd5hxb4a61s30lgdp10s0435vkjz6cvhriimwq0bia4z"; depends=[genefilter]; }; + CNVPanelizer = derive2 { name="CNVPanelizer"; version="1.2.2"; sha256="1mcdyib8gbg4w9m3r437z3a1az249pgad0db2w9cjk78hblxsi8d"; depends=[exomeCopy foreach GenomicRanges ggplot2 IRanges NOISeq openxlsx plyr Rsamtools S4Vectors]; }; + CNVrd2 = derive2 { name="CNVrd2"; version="1.10.2"; sha256="1r0fjb6br699rkkqpkpwi8s8bk9gv5lgck4xfgbydjllbbvmiq35"; depends=[DNAcopy ggplot2 gridExtra IRanges rjags Rsamtools VariantAnnotation]; }; + CNVtools = derive2 { name="CNVtools"; version="1.66.0"; sha256="1v6y0j20d306snr3r8zrvk574ybcyg00pjxjya09r6srmci2bz74"; depends=[survival]; }; + CODEX = derive2 { name="CODEX"; version="1.4.0"; sha256="0cjfnryzxxhmhcbwsf34509b7srgxzlv4barrh8h8dyq2wfzzrqp"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb IRanges Rsamtools]; }; + COHCAP = derive2 { name="COHCAP"; version="1.10.0"; sha256="0qdwd7igd2aaqbwl5lpfrzw9qilz651b1p88794qmxwih7lmd6s5"; depends=[COHCAPanno WriteXLS]; }; + COMPASS = derive2 { name="COMPASS"; version="1.10.2"; sha256="1y9r6d9gd1fbvmxi3cvxcmz2b3n9gbncw6p2s8gjdzqj7i0nar7x"; depends=[abind clue data_table knitr plyr RColorBrewer Rcpp scales]; }; + CONFESS = derive2 { name="CONFESS"; version="1.0.2"; sha256="0xc8bns00980fwxdpbx48r6h7pddv2jiplw38svmsv497zcb2mny"; depends=[changepoint cluster contrast EBImage ecp flexmix flowClust flowCore flowMeans flowMerge flowPeaks foreach ggplot2 limma MASS moments outliers plotrix raster readbitmap reshape2 SamSPECTRAL waveslim wavethresh zoo]; }; + CORREP = derive2 { name="CORREP"; version="1.38.0"; sha256="16zhb5ajkh10azb2mkjbq6hmf6vqvxz3bzm4q424ir4azfqrd3qs"; depends=[e1071]; }; + COSNet = derive2 { name="COSNet"; version="1.6.0"; sha256="16gfbz6i5kmi8msgs0n5igybxz9kd4qyqv3p2dhr6n5nxzcqlhfw"; depends=[]; }; + CRISPRseek = derive2 { name="CRISPRseek"; version="1.12.0"; sha256="0kl20amakkyl3296zbfifi669ajm6i9x4hslav20ibzykgdwkscc"; depends=[BiocGenerics BiocParallel Biostrings BSgenome data_table hash IRanges S4Vectors seqinr]; }; + CRImage = derive2 { name="CRImage"; version="1.20.0"; sha256="0061qhplzjwhdyqa1m4jzwfmpjlc24a87b5z3p7yr2vrihp66n7y"; depends=[aCGH DNAcopy e1071 EBImage foreach MASS sgeostat]; }; + CSAR = derive2 { name="CSAR"; version="1.24.0"; sha256="1m48njl4w0x7dyxqsfpflchclwy8nj07ldwckkh6522zdqmijb46"; depends=[GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; + CSSP = derive2 { name="CSSP"; version="1.10.0"; sha256="0p2zs1ny4khmdpnbma53npb1lh4d8fh7szp2g8xhnilvmj744y1q"; depends=[]; }; + CancerMutationAnalysis = derive2 { name="CancerMutationAnalysis"; version="1.14.0"; sha256="13nivw19hqaglg3v6pmqshwy2gnfjvigciw3wpl2791a22iaimn2"; depends=[AnnotationDbi limma qvalue]; }; + Cardinal = derive2 { name="Cardinal"; version="1.4.0"; sha256="0b4yb6sf27by2cjqy6cr4qrzs5ms83h210m1777vy33c7l4idlc7"; depends=[Biobase BiocGenerics irlba lattice ProtGenerics signal sp]; }; + Category = derive2 { name="Category"; version="2.38.0"; sha256="0c8px9ar589f3iqkbk9vfhwj30dpnxj81h8sfq20cl1cbmcx2a04"; depends=[annotate AnnotationDbi Biobase BiocGenerics genefilter graph GSEABase Matrix RBGL RSQLite]; }; + CausalR = derive2 { name="CausalR"; version="1.4.3"; sha256="0307k6wnhar675l25xvwi0h97x6jpi64a5y874h8gqm2a5f0ybyl"; depends=[igraph]; }; + CellNOptR = derive2 { name="CellNOptR"; version="1.18.0"; sha256="0vqjyjn2248mpc1lc4p4sivf1lhvjiwvgyi0jifm9as2yqz2np7k"; depends=[ggplot2 graph hash RBGL RCurl Rgraphviz XML]; }; + CexoR = derive2 { name="CexoR"; version="1.10.0"; sha256="0g2ln2l3vlp86zymyf2bdlc3g2piwv65vaxb7w7wd8ngp06zqais"; depends=[genomation GenomeInfoDb GenomicRanges idr IRanges RColorBrewer Rsamtools rtracklayer S4Vectors]; }; + ChAMP = derive2 { name="ChAMP"; version="1.10.0"; sha256="168z9lgfmhmymflfiml8g8kq6v695r94sfjhcng8wjkjn8dfbz6x"; depends=[bumphunter ChAMPdata DNAcopy doParallel GenomicRanges Illumina450ProbeVariants_db IlluminaHumanMethylation450kmanifest impute isva limma marray minfi plyr preprocessCore quadprog qvalue RefFreeEWAS RPMM sva wateRmelon]; }; + ChIPComp = derive2 { name="ChIPComp"; version="1.2.0"; sha256="1l120wiq8xmvxa513vy4vgz34ddbh870djr776yvlcsrapxdl2iz"; depends=[BiocGenerics BSgenome_Hsapiens_UCSC_hg19 BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicRanges IRanges limma Rsamtools rtracklayer S4Vectors]; }; + ChIPQC = derive2 { name="ChIPQC"; version="1.8.9"; sha256="1d3rm2shs2f66dahllspb4sgnqzkds6ds0b1pp6jnrzkqhw07s5h"; depends=[Biobase BiocGenerics BiocParallel chipseq DiffBind GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gtools IRanges Nozzle_R1 reshape2 Rsamtools S4Vectors TxDb_Celegans_UCSC_ce6_ensGene TxDb_Dmelanogaster_UCSC_dm3_ensGene TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene TxDb_Mmusculus_UCSC_mm9_knownGene TxDb_Rnorvegicus_UCSC_rn4_ensGene]; }; + ChIPXpress = derive2 { name="ChIPXpress"; version="1.14.0"; sha256="1ilqkx21jsvj3x0im4fgp4kacspynqn234pjj6vpsx1981lvavxy"; depends=[affy biganalytics bigmemory Biobase ChIPXpressData frma GEOquery]; }; + ChIPpeakAnno = derive2 { name="ChIPpeakAnno"; version="3.6.5"; sha256="0mncyh1ixsp4ngpc8flmkq1czi1kkgcy14ws556rymkx02v3c9pc"; depends=[AnnotationDbi Biobase BiocGenerics BiocInstaller biomaRt Biostrings BSgenome DBI ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GO_db graph idr IRanges limma matrixStats multtest RBGL regioneR S4Vectors seqinr SummarizedExperiment VennDiagram]; }; + ChIPseeker = derive2 { name="ChIPseeker"; version="1.8.9"; sha256="0c2sm9zs377iq9fhpqlmqkfxxldww97yd0p1isbvmzz4m8j81nqb"; depends=[AnnotationDbi BiocGenerics boot DOSE dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gplots gridBase gtools IRanges magrittr plotrix RColorBrewer rtracklayer S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene UpSetR]; }; + ChIPseqR = derive2 { name="ChIPseqR"; version="1.26.0"; sha256="14c4hyzj19c4r8s74zfpkslv0nswmb2pqf0pihn43hycn1z9dhfi"; depends=[BiocGenerics Biostrings fBasics GenomicRanges HilbertVis IRanges S4Vectors ShortRead timsac]; }; + ChIPsim = derive2 { name="ChIPsim"; version="1.26.0"; sha256="0b992sv8xrrafrj30bmgmy1p7zb5qdw5kyjm23bmnk7jd9fck382"; depends=[Biostrings IRanges ShortRead XVector]; }; + ChemmineOB = derive2 { name="ChemmineOB"; version="1.10.2"; sha256="0jxnlwprn8r8mwqgkij6r4xrh94rxx8l44h1x3scplkphdwslxbk"; depends=[BH BiocGenerics Rcpp zlibbioc]; }; + ChemmineR = derive2 { name="ChemmineR"; version="2.24.2"; sha256="02idsylmrpm2g20vbg81i12r6snp95lg0wbljcvrri91p09xb8xy"; depends=[BH BiocGenerics DBI digest ggplot2 Rcpp RCurl rjson]; }; + Chicago = derive2 { name="Chicago"; version="1.0.4"; sha256="10dx3ka4habmgw1ykybpb3f93qn4xghy2mivmym904i8fgli28ys"; depends=[data_table Delaporte Hmisc MASS matrixStats]; }; + ChromHeatMap = derive2 { name="ChromHeatMap"; version="1.26.0"; sha256="08zpng276f2dq56sgmzrjpf76plh9778f11liw01yx0c16ysxvj5"; depends=[annotate AnnotationDbi Biobase BiocGenerics IRanges rtracklayer]; }; + ClassifyR = derive2 { name="ClassifyR"; version="1.6.2"; sha256="1vz569b6prmndq4vw7g6xprx39ckprhi8bk0hn7gj62hv4drcalv"; depends=[Biobase BiocParallel locfit ROCR]; }; + Clomial = derive2 { name="Clomial"; version="1.8.0"; sha256="1vzzb1lxmzwihihi4241xhj3l0szllzvq70da6nsir4sqikfljdm"; depends=[matrixStats permute]; }; + Clonality = derive2 { name="Clonality"; version="1.20.0"; sha256="19fizpvnpzqcjlkyalg341c3v5w9ll7a6h3g2fqnq4ffn1n61a05"; depends=[DNAcopy]; }; + ClusterSignificance = derive2 { name="ClusterSignificance"; version="1.0.3"; sha256="15pfs74k6ggp2v1ilbgzv5ab0w2rvq9f4igxzaq17krdakgq2krs"; depends=[pracma princurve RColorBrewer scatterplot3d]; }; + CoCiteStats = derive2 { name="CoCiteStats"; version="1.44.0"; sha256="1v22ld0iprp2c3hrr0vnfga2j1wvlay43p9g4mdbkiw7a6mxi21x"; depends=[AnnotationDbi org_Hs_eg_db]; }; + CoGAPS = derive2 { name="CoGAPS"; version="2.6.0"; sha256="0wy072pdjss5jzk5s9vm70y9xj6basqwhbiawllr716c7shcgmlb"; depends=[BH gplots RColorBrewer Rcpp]; }; + CoRegNet = derive2 { name="CoRegNet"; version="1.8.2"; sha256="19i9mnbqnfaglfljgngcqw63gg1nka4qcqrn1l6siqx15sfc77zb"; depends=[arules igraph shiny]; }; + CompGO = derive2 { name="CompGO"; version="1.8.1"; sha256="18vlkgrdsd2hq2w787zqg2b0hyqnxsjnx82nnk024fsirgrb5p6a"; depends=[GenomicFeatures ggplot2 pathview pcaMethods RDAVIDWebService reshape2 Rgraphviz rtracklayer TxDb_Mmusculus_UCSC_mm9_knownGene]; }; + ComplexHeatmap = derive2 { name="ComplexHeatmap"; version="1.10.2"; sha256="0974qmzy93msn0xr1bz98bzmmq3pnc2y43116yv7vnaabqb2mml1"; depends=[circlize colorspace dendextend GetoptLong GlobalOptions RColorBrewer]; }; + ConsensusClusterPlus = derive2 { name="ConsensusClusterPlus"; version="1.36.0"; sha256="1kb2h46hp20b2mij120nz8lmn8icbjm0ixchg0p4izhsj1g3l8s2"; depends=[ALL Biobase cluster]; }; + CopyNumber450k = derive2 { name="CopyNumber450k"; version="1.8.0"; sha256="0swjl0jh25ybnayx2q7kk6f01q1vjgplp5791im5r4q6djdisfay"; depends=[Biobase BiocGenerics DNAcopy minfi preprocessCore]; }; + CopywriteR = derive2 { name="CopywriteR"; version="2.4.0"; sha256="0lr9m7b5hn3a983y6614905yhs86676x53d78i2bk0ndh7p5hah9"; depends=[BiocParallel chipseq CopyhelpeR data_table DNAcopy futile_logger GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges matrixStats Rsamtools S4Vectors]; }; + CorMut = derive2 { name="CorMut"; version="1.14.0"; sha256="0asakw2bqwb8qp0zcwjachyx4w7kiw8fzwwa7sllfpa57m5m1v64"; depends=[igraph seqinr]; }; + Cormotif = derive2 { name="Cormotif"; version="1.18.0"; sha256="17ldh2yfiapka2clz6j71jqla6a7avas3hnnxpi0p0598vawp6x0"; depends=[affy limma]; }; + CountClust = derive2 { name="CountClust"; version="1.0.2"; sha256="192i2mvzsf558lsh2zshvgrm9q0a4xbhbgjjma1403v5cyrks8j1"; depends=[cowplot flexmix ggplot2 gtools limma maptpx picante plyr reshape2 slam]; }; + CoverageView = derive2 { name="CoverageView"; version="1.8.0"; sha256="1z4prmf20r2y872yjlj5zza31rn5dlcn95348gib04hwwba6d5ak"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; }; + CrispRVariants = derive2 { name="CrispRVariants"; version="1.0.2"; sha256="0y16rlk5yi2bsq28m0gw4sbr0w1rf4msyimgh28rh0imd63rmmwc"; depends=[AnnotationDbi BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges reshape2 Rsamtools S4Vectors]; }; + DAPAR = derive2 { name="DAPAR"; version="1.4.8"; sha256="0m1jbv3l3qz972q53wylrybl872ldxm1sscyw8l8p7rcznk0q5fl"; depends=[Cairo cp4p doParallel foreach ggplot2 gplots impute imputeLCMD knitr lattice limma Matrix MSnbase norm pcaMethods png preprocessCore RColorBrewer reshape2 scales tmvtnorm XLConnect]; }; + DART = derive2 { name="DART"; version="1.20.0"; sha256="17x980mix19pb72yag6v0ingq64vn6hpynfpy4vcjrlhf9874pf6"; depends=[igraph]; }; + DASiR = derive2 { name="DASiR"; version="1.11.0"; sha256="078ligzx37pa3apd5xpjbf8pq0i1q7cz709767aalbwhbw2zf6ak"; depends=[Biostrings GenomicRanges IRanges XML]; }; + DBChIP = derive2 { name="DBChIP"; version="1.16.0"; sha256="1ilq33jpynz51ipsrjdbwcbl6h6a40l7d230mfqzq922347dd9ll"; depends=[DESeq edgeR]; }; + DChIPRep = derive2 { name="DChIPRep"; version="1.2.3"; sha256="10h2nwzd9z7c0nb1pw28zivq0fjpn7slzavhcwjfbynixhq2v84i"; depends=[assertthat ChIPpeakAnno DESeq2 fdrtool GenomicRanges ggplot2 plyr purrr reshape2 S4Vectors smoothmest soGGi SummarizedExperiment tidyr]; }; + DECIPHER = derive2 { name="DECIPHER"; version="2.0.2"; sha256="01plhsbw94pjvj9hc9css0zj7vp3xzad39sbwicx7rc0wpzk5knw"; depends=[Biostrings DBI IRanges RSQLite S4Vectors XVector]; }; + DEDS = derive2 { name="DEDS"; version="1.46.0"; sha256="1pli8wgcgcsdv2r4gw9fygiv842iyi1a2w80axla98l53wjzljyw"; depends=[]; }; + DEFormats = derive2 { name="DEFormats"; version="1.0.2"; sha256="034kbmsjgdg916cgihjmaa237dx6xn24ndz50a5fxvjmpy8y99am"; depends=[checkmate DESeq2 edgeR GenomicRanges SummarizedExperiment]; }; + DEGraph = derive2 { name="DEGraph"; version="1.24.0"; sha256="1yarc6xr0swlc6q583kmm65vpp195v86h8gsidr9as2y6cm6ggww"; depends=[graph KEGGgraph lattice mvtnorm NCIgraph R_methodsS3 R_utils RBGL Rgraphviz rrcov]; }; + DEGreport = derive2 { name="DEGreport"; version="1.8.2"; sha256="1763z307m4k8h66xd7fjzljxggcgnf74k0rhdn40j83mbvcs4ar4"; depends=[BiocGenerics edgeR ggplot2 plyr]; }; + DEGseq = derive2 { name="DEGseq"; version="1.26.0"; sha256="04fxbnhgg6l674vr0xav0fl7vg8isqsnksvhanssarvaa1wqlrys"; depends=[qvalue samr]; }; + DESeq = derive2 { name="DESeq"; version="1.24.0"; sha256="01v5ikwpzxlp6f9p17qrvxbigxdhr0y24b9pjkh7n6ak2faqz5k7"; depends=[Biobase BiocGenerics genefilter geneplotter lattice locfit MASS RColorBrewer]; }; + DESeq2 = derive2 { name="DESeq2"; version="1.12.4"; sha256="12h77f0dpi5xaj7aqf50kkyn6lq9j7bcsly1r0ffmyfcszrp1sfx"; depends=[Biobase BiocGenerics BiocParallel genefilter geneplotter GenomicRanges ggplot2 Hmisc IRanges locfit Rcpp RcppArmadillo S4Vectors SummarizedExperiment]; }; + DEXSeq = derive2 { name="DEXSeq"; version="1.18.4"; sha256="0dm9n0k26gg78v8qmnjly3mdigfjdp2lzaabyss8ilcbx81z64ic"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel biomaRt DESeq2 genefilter geneplotter GenomicRanges hwriter IRanges RColorBrewer Rsamtools S4Vectors statmod stringr SummarizedExperiment]; }; + DFP = derive2 { name="DFP"; version="1.30.0"; sha256="0r5jjzmirnb4ngcb497yqg0fg1di1lcax2nlhbq27v1grb9001q9"; depends=[Biobase]; }; + DMRcaller = derive2 { name="DMRcaller"; version="1.4.2"; sha256="1s57yfjajjw9m5i15p3wywfc1dins22fwd18bly7a14yxb6qdyrk"; depends=[GenomicRanges IRanges Rcpp RcppRoll S4Vectors]; }; + DMRcate = derive2 { name="DMRcate"; version="1.8.6"; sha256="0y1ysmavim5jc0mr1higk5sz9cg8bydav7zj2vn0p6da45ijjzqd"; depends=[DMRcatedata DSS GenomicRanges Gviz IRanges limma minfi plyr S4Vectors]; }; + DMRforPairs = derive2 { name="DMRforPairs"; version="1.8.0"; sha256="1hjw3d3pwdg10bwkxwjcrcjxrcanyk13zbrhb50p0zhys5gksp78"; depends=[GenomicRanges Gviz R2HTML]; }; + DNABarcodes = derive2 { name="DNABarcodes"; version="1.2.2"; sha256="12qw1f3h4sb89fv5i9wr65hb86x84a6j5f3khwv8r9w0y6cp9llq"; depends=[BH Matrix Rcpp]; }; + DNAcopy = derive2 { name="DNAcopy"; version="1.46.0"; sha256="0vwv2mndfjpcjp4sybg75abc7xnx8zyw8zjk717k6xh8c33ymcip"; depends=[]; }; + DNAshapeR = derive2 { name="DNAshapeR"; version="1.0.2"; sha256="10x1331rmvdywsfd9agzir4lalv97bzwsa4vwifw7gizdbb3a5b8"; depends=[Biostrings fields GenomicRanges Rcpp]; }; + DOQTL = derive2 { name="DOQTL"; version="1.8.0"; sha256="0vlvvwhqg8vw45p6kp3p3nazvy9hkpr8wz8sxrvkdy6pyj4nwws1"; depends=[annotate annotationTools Biobase BiocGenerics biomaRt BSgenome_Mmusculus_UCSC_mm10 corpcor doParallel foreach fpc GenomicRanges hwriter IRanges iterators mclust QTLRel regress rhdf5 Rsamtools RUnit VariantAnnotation XML]; }; + DOSE = derive2 { name="DOSE"; version="2.10.7"; sha256="1i3pfkvx7z1n6wzb4rnmdrnsjisfl0lnh29wl1k8kj1pgj1qbjy5"; depends=[AnnotationDbi DO_db ggplot2 GOSemSim igraph plyr qvalue reshape2 scales]; }; + DRIMSeq = derive2 { name="DRIMSeq"; version="1.0.2"; sha256="0gkv3xvsklnhsyiwzxwqvsj3nii9rqswfbvw7nxk209zrmmqkj7l"; depends=[BiocGenerics BiocParallel edgeR GenomicRanges ggplot2 IRanges reshape2 S4Vectors]; }; + DSS = derive2 { name="DSS"; version="2.12.0"; sha256="0l9sgp198pdmd36hipsk3whf29d44qqay2d1k4mchsbq0qbmwsza"; depends=[Biobase bsseq]; }; + DTA = derive2 { name="DTA"; version="2.18.0"; sha256="0y7516d5yxijnl15wmvh8n5wyp3551ph5vzdm6i0yy0riaihqki8"; depends=[LSD scatterplot3d]; }; + DeMAND = derive2 { name="DeMAND"; version="1.2.1"; sha256="1haqr8mq77jvvkrc1pfs37i89fd3zjjdi59nnl9qlll1k761qh99"; depends=[KernSmooth]; }; + DeconRNASeq = derive2 { name="DeconRNASeq"; version="1.14.0"; sha256="14bd8yd5zy4nagmcfr9r510410va9avcljaxxwjbbprp6chxm64h"; depends=[ggplot2 limSolve pcaMethods]; }; + DiffBind = derive2 { name="DiffBind"; version="2.0.9"; sha256="0sy1mb986mi1cxzy1ar5hmshzmqdw8082h725d0yiinymqbfc529"; depends=[amap BiocParallel DESeq2 dplyr edgeR GenomicAlignments GenomicRanges gplots IRanges lattice limma locfit RColorBrewer Rcpp Rsamtools S4Vectors SummarizedExperiment systemPipeR zlibbioc]; }; + DiffLogo = derive2 { name="DiffLogo"; version="1.2.1"; sha256="0dj8qkxx17sn1yh5wwcb4mmghsigicfz5kb5sldk3j988f0pnbcj"; depends=[cba]; }; + DirichletMultinomial = derive2 { name="DirichletMultinomial"; version="1.14.0"; sha256="14xr8g3bzhni780pafi2jm53fd124xw9rnvdanhqzwqk5l8mrqzn"; depends=[BiocGenerics IRanges S4Vectors]; }; + DriverNet = derive2 { name="DriverNet"; version="1.12.0"; sha256="1xwvryjf98hi4l5g4qwg8ilw3kw206r9ipn4dy5jv5kzgirp3p4f"; depends=[]; }; + DrugVsDisease = derive2 { name="DrugVsDisease"; version="2.12.0"; sha256="1bj86zlcp73km49zqv8ijlq9zq7bjnmf2bhcdhrcf0rixph52q62"; depends=[affy annotate ArrayExpress BiocGenerics biomaRt cMap2data DrugVsDiseasedata GEOquery hgu133a_db hgu133a2_db hgu133plus2_db limma qvalue RUnit xtable]; }; + DupChecker = derive2 { name="DupChecker"; version="1.10.2"; sha256="0npx294zvpypk23z0h2pmyazc7w8d5wywl6psyr2m2vhmcrax5xl"; depends=[R_utils RCurl]; }; + DynDoc = derive2 { name="DynDoc"; version="1.50.0"; sha256="0j00kjlv1h9vx5jmq7cwj2vwnif52rqcs4mb0j9dv1mndqcdf2p6"; depends=[]; }; + EBImage = derive2 { name="EBImage"; version="4.14.2"; sha256="1dvjnkzjfsshm15jxcmzs82jarxqx9dr8z5kafyxjklh2arivwgx"; depends=[abind BiocGenerics fftwtools jpeg locfit png tiff]; }; + EBSEA = derive2 { name="EBSEA"; version="1.0.0"; sha256="11wgdgrqv83bhlngl9wqrazydsjvawnwrdb9b82h50hd5h080vvh"; depends=[edgeR gtools limma]; }; + EBSeq = derive2 { name="EBSeq"; version="1.12.0"; sha256="0yqrrabx78ml8na1ppwg6b0a47pc2c488c5pfavyi75v04k708yp"; depends=[blockmodeling gplots testthat]; }; + EBSeqHMM = derive2 { name="EBSeqHMM"; version="1.6.0"; sha256="001swq9m414mk6r8j5iglfbp1cw3xp165hf68jk2dy9sz0p0l25j"; depends=[EBSeq]; }; + EBarrays = derive2 { name="EBarrays"; version="2.36.0"; sha256="1jvfk0f4rr8f502vhgh4fq5x7m9823xl3ncyl032rdsrwbildbxp"; depends=[Biobase cluster lattice]; }; + EBcoexpress = derive2 { name="EBcoexpress"; version="1.16.0"; sha256="069smdyv8bpd5v2nz2i67h6vqpfdf5r9n5s2cyk7g136a0p29zca"; depends=[EBarrays mclust minqa]; }; + EDASeq = derive2 { name="EDASeq"; version="2.6.2"; sha256="05infzrah41xh3mzbckh2g9hywbn3xqwx3jjzvyxs3q5z209av91"; depends=[AnnotationDbi aroma_light Biobase BiocGenerics biomaRt Biostrings DESeq GenomicFeatures GenomicRanges IRanges Rsamtools ShortRead]; }; + EDDA = derive2 { name="EDDA"; version="1.10.0"; sha256="10rlahznhva9b6f4isb604a7di753md6l260z987291vp70m0pyf"; depends=[baySeq DESeq edgeR Rcpp ROCR snow]; }; + EGAD = derive2 { name="EGAD"; version="1.0.4"; sha256="0ysn42wpji4nphdwdy2j25v137rlxpyvg2wqifqm0vh09m7mgwr5"; depends=[arrayQualityMetrics Biobase GEOquery gplots igraph impute limma MASS Matrix plyr RColorBrewer RCurl zoo]; }; + EGSEA = derive2 { name="EGSEA"; version="1.0.3"; sha256="1f7fsh3kzhq3l55lczxmv724hwy6pq4gb1rnhc4pkqandl7vvsig"; depends=[AnnotationDbi Biobase edgeR EGSEAdata gage ggplot2 globaltest gplots GSVA HTMLUtils hwriter limma org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db PADOG pathview safe stringi topGO]; }; + ELBOW = derive2 { name="ELBOW"; version="1.8.0"; sha256="0133j9zdmpy22l4672dhz8y1i2hi8a1izxakrvd0ldbmg502jscw"; depends=[]; }; + ELMER = derive2 { name="ELMER"; version="1.4.2"; sha256="0nbbh2rwynr28y2rmsd0nmpc5b22x5bbvhgrh447w9znl05smqx6"; depends=[BiocGenerics ELMER_data GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra Homo_sapiens IlluminaHumanMethylation450kanno_ilmn12_hg19 IRanges minfi reshape S4Vectors]; }; + EMDomics = derive2 { name="EMDomics"; version="2.2.2"; sha256="0qdachnnhvwyh9v3s9isd6yyksxi8gs56nf29v5rfw7429v2wgmf"; depends=[BiocParallel CDFt emdist ggplot2 matrixStats preprocessCore]; }; + ENCODExplorer = derive2 { name="ENCODExplorer"; version="1.4.3"; sha256="0khc5qfwjl2adqgayjz5yhg0g3jw0blkqxqih9jxkccrw83b28b6"; depends=[jsonlite RCurl RSQLite]; }; + ENVISIONQuery = derive2 { name="ENVISIONQuery"; version="1.20.0"; sha256="012f7scrmnxqjg52gjhswrrxbvagsdxmiwbxs4n6358yf214wr2h"; depends=[rJava XML]; }; + ENmix = derive2 { name="ENmix"; version="1.8.0"; sha256="01r332wngrvzg5daspaf6dqkwanyc40mv2k6qc8iz2wvh3vdpg4q"; depends=[Biobase doParallel foreach geneplotter impute MASS minfi preprocessCore sva wateRmelon]; }; + EWCE = derive2 { name="EWCE"; version="1.0.2"; sha256="1qcqadqfjmhr96mnd86wx9x5ncc6pm593kcqx8wnlgkkdzr6flq5"; depends=[biomaRt ggplot2 reshape2]; }; + EasyqpcR = derive2 { name="EasyqpcR"; version="1.14.0"; sha256="1vnh0g87x52qlrqk1nwfcaa4r7nb7mr6xdzrxqsivrx13k5d070q"; depends=[gWidgetsRGtk2 matrixStats plotrix plyr]; }; + EmpiricalBrownsMethod = derive2 { name="EmpiricalBrownsMethod"; version="1.0.2"; sha256="183zn477pjrj71d5b3dnkf4mgvjb8razply0lrpq8ickvqn3z3s6"; depends=[]; }; + EnrichedHeatmap = derive2 { name="EnrichedHeatmap"; version="1.2.2"; sha256="1fky5gb6ix2y0xfn8whwsrw793msmcrf5bjlpzk1vmvyyc5pvc9a"; depends=[ComplexHeatmap GenomicRanges GetoptLong IRanges locfit matrixStats]; }; + EnrichmentBrowser = derive2 { name="EnrichmentBrowser"; version="2.2.3"; sha256="0l1zxb5425li1jzhqd0x1dwwhl92g2d5j5jrms2bpl70klyy2af1"; depends=[AnnotationDbi Biobase biocGraph ComplexHeatmap DESeq2 EDASeq edgeR geneplotter GO_db graph GSEABase hwriter KEGGgraph KEGGREST limma MASS pathview ReportingTools Rgraphviz S4Vectors safe SPIA SummarizedExperiment topGO]; }; + ExiMiR = derive2 { name="ExiMiR"; version="2.14.0"; sha256="0krk4dgnla63dmn5r3qy5nmq0rkmff26qdhw7rilmh3yb95ri7lx"; depends=[affy affyio Biobase limma preprocessCore]; }; + ExpressionAtlas = derive2 { name="ExpressionAtlas"; version="1.0.3"; sha256="1yvvqhd2d7lz8fwfrag68xn7sndhag89dnj37w5zwg0hfippyas9"; depends=[Biobase httr limma S4Vectors SummarizedExperiment XML xml2]; }; + ExpressionView = derive2 { name="ExpressionView"; version="1.24.0"; sha256="1sirhz91xfcbsya2s9y565hffrsjbyd4bippn92x5c8y4qhyw11z"; depends=[AnnotationDbi bitops caTools eisa GO_db isa2 KEGG_db]; }; + FEM = derive2 { name="FEM"; version="2.8.0"; sha256="1jgy0k5a7h46vda32a2m077w4z1gif3vvxxch7qp7hx982y4xyjy"; depends=[AnnotationDbi BiocGenerics corrplot graph igraph impute limma marray Matrix org_Hs_eg_db]; }; + FGNet = derive2 { name="FGNet"; version="3.6.2"; sha256="1b4v0hx1xrzi7zyah8wb983akr9jl3f4xqr9b5yy8cv72bqvch0x"; depends=[hwriter igraph plotrix png R_utils RColorBrewer reshape2 XML]; }; + FISHalyseR = derive2 { name="FISHalyseR"; version="1.6.2"; sha256="1j4gsmzzkbz0mifqqrfgaxxrvprc1rp62dhv897wx0yhn893fynv"; depends=[abind EBImage]; }; + FRGEpistasis = derive2 { name="FRGEpistasis"; version="1.8.0"; sha256="02y0jx0lqsikh947cs6byjahbi6yxplwv6gqfrdv2imd47g38309"; depends=[fda MASS]; }; + FamAgg = derive2 { name="FamAgg"; version="1.0.2"; sha256="17v6jy03f3x6a09f5fdqkw0gd4h5ipl1bcsqzq39vvkmrvdr6q09"; depends=[BiocGenerics gap igraph kinship2 Matrix survey]; }; + FindMyFriends = derive2 { name="FindMyFriends"; version="1.2.2"; sha256="18wz62sr4nf3df165bik57khz7wq5xab6s6b100ml7crn912a7li"; depends=[Biobase BiocGenerics BiocParallel Biostrings digest dplyr filehash ggdendro ggplot2 gtable igraph IRanges kebabs Matrix Rcpp reshape2 S4Vectors]; }; + FlowRepositoryR = derive2 { name="FlowRepositoryR"; version="1.4.0"; sha256="1rixa090sdbv8crfccygaq3lhx5171fqaf7vn8dsbawfqczzmyam"; depends=[jsonlite RCurl XML]; }; + FlowSOM = derive2 { name="FlowSOM"; version="1.4.0"; sha256="05rsy2hdjv4fr9bv1b8phzdj0xw4ilgk8m3dgqlnlm6m8sylhnk2"; depends=[BiocGenerics ConsensusClusterPlus flowCore flowUtils igraph tsne XML]; }; + FourCSeq = derive2 { name="FourCSeq"; version="1.6.2"; sha256="13c23ndssfhzcqv8wl37zmswajyk4x08aj0v562j0zcqnqcrscg1"; depends=[Biobase Biostrings DESeq2 fda GenomicAlignments GenomicRanges ggbio ggplot2 gtools LSD Matrix reshape2 Rsamtools rtracklayer SummarizedExperiment]; }; + FunciSNP = derive2 { name="FunciSNP"; version="1.14.0"; sha256="197v7kf6xl3b4jkyjpzgy1z49dh4dbrf8nsfa9mlzi114l5kbyy8"; depends=[Biobase BiocGenerics ChIPpeakAnno FunciSNP_data GenomicRanges ggplot2 IRanges plyr reshape Rsamtools rtracklayer S4Vectors scales snpStats TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; + GENE_E = derive2 { name="GENE.E"; version="1.12.2"; sha256="0ri377knly3cwlif64c68rsk8f1fjdfx1abq55j3lr30pxyphc97"; depends=[RCurl rhdf5]; }; + GENESIS = derive2 { name="GENESIS"; version="2.2.7"; sha256="1dllw2kjrnmp61xakxavwbrgr1rfrad7hs2msbc8k6axw4n90hl4"; depends=[Biobase gdsfmt graph GWASTools SeqArray SeqVarTools]; }; + GEOmetadb = derive2 { name="GEOmetadb"; version="1.32.2"; sha256="1pr2zl4814b5zpzn0msyy2hwf39kv03ci3fi5113xlpbiy1rj9ch"; depends=[GEOquery RSQLite]; }; + GEOquery = derive2 { name="GEOquery"; version="2.38.4"; sha256="1ckgxd7h8009h0bnmvggpd6yppp461zw2bcqkda5hiwys8mfb78x"; depends=[Biobase httr RCurl XML]; }; + GEOsearch = derive2 { name="GEOsearch"; version="1.2.2"; sha256="0fdkf590kvjscvvjg2lfkz7bw7jg2vpay1z99l9yrnpgaqv146vl"; depends=[org_Hs_eg_db org_Mm_eg_db]; }; + GEOsubmission = derive2 { name="GEOsubmission"; version="1.24.0"; sha256="0fvdps5ly55j442lisg6hj96wn6821427xc1bdfyc7ri1ds4fxgy"; depends=[affy Biobase]; }; + GEWIST = derive2 { name="GEWIST"; version="1.16.0"; sha256="1qrs0apb27isv8aabv64ym1rr4zvv201v43zhmgdjdlbmwcfyjky"; depends=[car]; }; + GGBase = derive2 { name="GGBase"; version="3.34.0"; sha256="1nbqpfdpi3bh26wqmvrrfk8khpy6sgsrvkj7b193ycbdnsjv2iqk"; depends=[AnnotationDbi Biobase BiocGenerics digest genefilter GenomicRanges IRanges limma Matrix S4Vectors snpStats SummarizedExperiment]; }; + GGtools = derive2 { name="GGtools"; version="5.8.0"; sha256="1zrl22p5cfhw6w0034176js8y0rzmdhdias1acin7dwbw588rp5l"; depends=[AnnotationDbi biglm Biobase BiocGenerics Biostrings bit data_table ff GenomeInfoDb GenomicRanges GGBase ggplot2 Gviz hexbin Homo_sapiens IRanges iterators reshape2 ROCR Rsamtools rtracklayer S4Vectors snpStats VariantAnnotation]; }; + GLAD = derive2 { name="GLAD"; version="2.36.0"; sha256="09wpmh5mahvg16hfl8h5rqvrxpc81df4k7z5wv93s0p41kx6kil7"; depends=[]; }; + GMRP = derive2 { name="GMRP"; version="1.0.0"; sha256="15rh0sy29v91c0s91vjfmci64ar6x58lfm3ixgwm6z7lf0xhbrl3"; depends=[diagram GenomicRanges plotrix]; }; + GOFunction = derive2 { name="GOFunction"; version="1.20.0"; sha256="06y42nydbc19z5kzp80iy3b3xhq0wmk2mfsp9chxvgrc54a21ynj"; depends=[AnnotationDbi Biobase DBI GO_db graph Rgraphviz SparseM]; }; + GOSemSim = derive2 { name="GOSemSim"; version="1.30.3"; sha256="15g7r0cccfphm32pw9bmk28k54vl21b0jczx8nr1z2q5kgg04ca8"; depends=[AnnotationDbi GO_db Rcpp]; }; + GOSim = derive2 { name="GOSim"; version="1.10.0"; sha256="03s79r03f2nv6blf3qrvfazx89jiyyn9bm41b53rig1lpadp2fzh"; depends=[annotate AnnotationDbi cluster corpcor flexmix GO_db graph Matrix org_Hs_eg_db RBGL Rcpp topGO]; }; + GOTHiC = derive2 { name="GOTHiC"; version="1.8.1"; sha256="0s4jsk4j2yxh5mqvvni5c606hyfqjgh9p7g4rssh9gq9saglpgni"; depends=[BiocGenerics Biostrings BSgenome data_table GenomicRanges ggplot2 IRanges Rsamtools rtracklayer S4Vectors ShortRead]; }; + GOexpress = derive2 { name="GOexpress"; version="1.6.1"; sha256="09m0g03f0s9fnp1c1h1d1mv0dw73msbifpdf8ldyqcx75c3xdx6k"; depends=[Biobase biomaRt ggplot2 gplots randomForest RColorBrewer stringr VennDiagram]; }; + GOstats = derive2 { name="GOstats"; version="2.38.1"; sha256="1hhw6vqr8f3g4jzq0v8f2za0r1h117j5s6av87zxs41cv7dq1wb3"; depends=[annotate AnnotationDbi AnnotationForge Biobase Category GO_db graph RBGL]; }; + GOsummaries = derive2 { name="GOsummaries"; version="2.6.0"; sha256="0skhvpr80jgxfzk1c7jf2206jnxs44v6r2j39l4xj4llcfjf46b1"; depends=[ggplot2 gProfileR gtable limma plyr Rcpp reshape2]; }; + GRENITS = derive2 { name="GRENITS"; version="1.24.0"; sha256="1qhjqpjdasql1i8njnq431qp8zqklb1xh170lqlwjcfhhmnprzai"; depends=[ggplot2 Rcpp RcppArmadillo reshape2]; }; + GSALightning = derive2 { name="GSALightning"; version="1.0.2"; sha256="1ahcm9iikql1d73ng7irs37rwp99q1jp5g2nbxdk7436f7hglcgv"; depends=[data_table Matrix]; }; + GSAR = derive2 { name="GSAR"; version="1.6.0"; sha256="1q3pjwf66mi3kws88whw72xfh5xskvw55g7wiq3dp0kr0r45d5am"; depends=[igraph]; }; + GSCA = derive2 { name="GSCA"; version="2.2.0"; sha256="0vq94s36yq591lgva3v1317kh6dpq3wvy38ayxab0zmxzqhnighb"; depends=[ggplot2 gplots RColorBrewer reshape2 rhdf5 shiny sp]; }; + GSEABase = derive2 { name="GSEABase"; version="1.34.1"; sha256="1mvgja8malrnbzfakzjl5mmi7g080kj8zgxwc5964hcmn33i937j"; depends=[annotate AnnotationDbi Biobase BiocGenerics graph XML]; }; + GSEAlm = derive2 { name="GSEAlm"; version="1.32.0"; sha256="0axqalz4ixjsv91ga3sc9f9f5ncm8lr5fk6v40ng58nzb6xsk0sc"; depends=[Biobase]; }; + GSRI = derive2 { name="GSRI"; version="2.20.0"; sha256="0mwv7riwgg0jc06skna8cph7q7ry1a9k7alrhxxgysd9458m8v9l"; depends=[Biobase fdrtool genefilter GSEABase les]; }; + GSReg = derive2 { name="GSReg"; version="1.6.0"; sha256="1wibhyqi2kfbi5fqmx867lxb4dw8ymfk6xkg0vjws5d2a5r5yf1d"; depends=[]; }; + GSVA = derive2 { name="GSVA"; version="1.20.0"; sha256="1n3hi48p7p5alzlw4rlxk7mp5bp3ybkf76a8b2swa7ifq52jiin2"; depends=[Biobase BiocGenerics GSEABase]; }; + GUIDEseq = derive2 { name="GUIDEseq"; version="1.2.1"; sha256="07ihkg1am7mfwc6f51zwpmm41sh1a3fsdkbdwk0p396f3069lva7"; depends=[BiocGenerics BiocParallel Biostrings BSgenome ChIPpeakAnno CRISPRseek data_table GenomeInfoDb GenomicAlignments GenomicRanges IRanges matrixStats Rsamtools S4Vectors]; }; + GWASTools = derive2 { name="GWASTools"; version="1.18.0"; sha256="07rxyl5b32ydnywx6z9ic156s1q6nn8wqx096pknyawi7wi9k3ad"; depends=[Biobase DBI DNAcopy gdsfmt GWASExactHW lmtest logistf ncdf4 quantsmooth RSQLite sandwich survival]; }; + GenRank = derive2 { name="GenRank"; version="1.0.2"; sha256="0dipv90wskcymvkmdw0313w5asz6wcnpx4nph3ab7kidgii6d8gp"; depends=[matrixStats reshape2 survcomp]; }; + GenVisR = derive2 { name="GenVisR"; version="1.0.4"; sha256="1593xfyk9pz92ndxgjr0ma4b1q7kjkx03a9kln4y16y2rxvfm4zh"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings DBI FField GenomicFeatures GenomicRanges ggplot2 gridExtra gtable gtools IRanges plyr reshape2 Rsamtools scales viridis]; }; + GeneAnswers = derive2 { name="GeneAnswers"; version="2.14.0"; sha256="17zfm2zm52m6x4kc07d9n06xyfw4ym7rk6d8z4mgxrmns7v83dkw"; depends=[annotate Biobase downloader Heatplus igraph MASS RBGL RColorBrewer RCurl RSQLite XML]; }; + GeneBreak = derive2 { name="GeneBreak"; version="1.2.0"; sha256="1k9f4vdg09h2bxs5gn7fjc6vm9zdq3afdcjl0bv33m6703k50k6i"; depends=[CGHbase CGHcall GenomicRanges QDNAseq]; }; + GeneExpressionSignature = derive2 { name="GeneExpressionSignature"; version="1.18.0"; sha256="055n0m0nwblasr6rwd28zpq6iranyymm403dd5bqi4kq6zg6ld4a"; depends=[Biobase PGSEA]; }; + GeneGA = derive2 { name="GeneGA"; version="1.22.0"; sha256="1p77yncy6frzqyc22yhaqx63j8xkv4idfqysald7bc8n8cvk7x03"; depends=[hash seqinr]; }; + GeneMeta = derive2 { name="GeneMeta"; version="1.44.0"; sha256="1l1ldj01a7p0ygb055kfbl2j2cj0y9xgalbq9fdn07j21jxf6wxl"; depends=[Biobase genefilter]; }; + GeneNetworkBuilder = derive2 { name="GeneNetworkBuilder"; version="1.14.4"; sha256="0560351z8f7rv7jn1ff88y1z9lyn7hd53zghfkhy2mbkjwvbn3lw"; depends=[graph plyr Rcpp]; }; + GeneOverlap = derive2 { name="GeneOverlap"; version="1.8.0"; sha256="0dnp91knca25l5q62ga36p04kwb7a1drmzjcbyvhkxxfd6d7h6jh"; depends=[gplots RColorBrewer]; }; + GeneRegionScan = derive2 { name="GeneRegionScan"; version="1.28.0"; sha256="0z2m96i7rv9vffw5h70lgkq9b6wj8m0p8n6nl184rkpq1d14fhk3"; depends=[affxparser Biobase Biostrings RColorBrewer S4Vectors]; }; + GeneSelectMMD = derive2 { name="GeneSelectMMD"; version="2.16.0"; sha256="1kj1xdscqhi84x89ygw9sc8yr991y19bc932ynhblhjrxs1fxrjb"; depends=[Biobase limma MASS survival]; }; + GeneSelector = derive2 { name="GeneSelector"; version="2.22.0"; sha256="1ykmmzr2cal43n72547ywl5w871pfxilhxnqdl2ki0dxss9l8cap"; depends=[Biobase limma multtest samr siggenes]; }; + GeneticsDesign = derive2 { name="GeneticsDesign"; version="1.40.0"; sha256="17r1bqa0ay6d5dyihgxwv4i1mc12980dkc5j995c5qkpcg0f3zv2"; depends=[gmodels gtools mvtnorm]; }; + GeneticsPed = derive2 { name="GeneticsPed"; version="1.34.0"; sha256="04lgnrpx8zd1rz7zdsyvjbvnlg6l4r4rbf82xdr5bhrn9805hw7c"; depends=[gdata genetics MASS]; }; + GenoGAM = derive2 { name="GenoGAM"; version="1.0.3"; sha256="0ag9v97hdk7vi0052ksapvsgh61w6i5g4fp9lygyfvb5kbzh6k5n"; depends=[BiocParallel data_table DESeq2 futile_logger GenomeInfoDb GenomicAlignments GenomicRanges IRanges mgcv reshape2 Rsamtools S4Vectors SummarizedExperiment]; }; + GenomeGraphs = derive2 { name="GenomeGraphs"; version="1.32.0"; sha256="17w40q7ykmc01xgr72z2j5yk3gyvf5y62s17n0yk4vlary01g9iv"; depends=[biomaRt]; }; + GenomeInfoDb = derive2 { name="GenomeInfoDb"; version="1.8.7"; sha256="1x96468bbjx7z3ikp1dgr2krnz9pwx86vmssfbfrsikaxfs4q829"; depends=[BiocGenerics IRanges S4Vectors]; }; + GenomicAlignments = derive2 { name="GenomicAlignments"; version="1.8.4"; sha256="1cccvalmm83ilk1kpq31ll8kdy9xclsr4pm4mlcc7bmp0rwkd2p2"; depends=[BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors SummarizedExperiment]; }; + GenomicFeatures = derive2 { name="GenomicFeatures"; version="1.24.5"; sha256="17qpisdgqyjz2mnaiwc4dx7dg11pwq3mkvmkah9zn07g9rhh8f7p"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings DBI GenomeInfoDb GenomicRanges IRanges RCurl RSQLite rtracklayer S4Vectors XVector]; }; + GenomicFiles = derive2 { name="GenomicFiles"; version="1.8.0"; sha256="1blvi0817c2926msjiggmrizchqzmsa2ksvfl8yg13a45s52rkil"; depends=[Biobase BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; + GenomicInteractions = derive2 { name="GenomicInteractions"; version="1.6.2"; sha256="1cm2zp9l9jdb6bgpq1sx799j24gs077ysvg02yn4qvag0p0xf1h5"; depends=[Biobase BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gridExtra Gviz igraph InteractionSet IRanges Rsamtools rtracklayer S4Vectors stringr]; }; + GenomicRanges = derive2 { name="GenomicRanges"; version="1.24.3"; sha256="098a34hfgb5z120v6wpl5nv8v61nm65yg6xq0j7i9bigvxr7apg2"; depends=[BiocGenerics GenomeInfoDb IRanges S4Vectors XVector]; }; + GenomicTuples = derive2 { name="GenomicTuples"; version="1.6.2"; sha256="04pq3f474lbhdni2hx942qs1wbsbq4454pgnr75bfj7q94rbx0fr"; depends=[BiocGenerics data_table GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; }; + Genominator = derive2 { name="Genominator"; version="1.26.0"; sha256="1d4j1k2m19w7bh41xjpl898yxhd05b2ja2ysrrpnincigdzsrczk"; depends=[BiocGenerics DBI GenomeGraphs IRanges RSQLite]; }; + Glimma = derive2 { name="Glimma"; version="1.0.0"; sha256="147bjpll9rjz77wdhmn75pjxv8znihix5f5sm539m897inviabcm"; depends=[DESeq2 edgeR]; }; + GlobalAncova = derive2 { name="GlobalAncova"; version="3.40.0"; sha256="0ir53i68zvb9vjvsiwqhqgppkk6r6jm6ydjcff6264mhp5pbmjsf"; depends=[annotate AnnotationDbi corpcor globaltest]; }; + GoogleGenomics = derive2 { name="GoogleGenomics"; version="1.4.2"; sha256="03y56akzkz7dy6868kcy03gqsnsjl7si5cfsx972m8wrhx5wa466"; depends=[Biostrings GenomeInfoDb GenomicAlignments GenomicRanges httr IRanges rjson Rsamtools S4Vectors VariantAnnotation]; }; + GraphAT = derive2 { name="GraphAT"; version="1.44.0"; sha256="1rb4zvlbljpvb0091j0phv6fdcpvk3f9b77dg3x2jcj321kbcgd2"; depends=[graph MCMCpack]; }; + GraphAlignment = derive2 { name="GraphAlignment"; version="1.36.0"; sha256="1nayinwnpqsn66idxyliwi6md7c7w3j9bdn4b049sqk45yq25v05"; depends=[]; }; + GraphPAC = derive2 { name="GraphPAC"; version="1.14.0"; sha256="14ia19g7k05r7hljybl8ipqh6bk2yc04l7vq3j30fxq9ahjx0l5h"; depends=[igraph iPAC RMallow TSP]; }; + GreyListChIP = derive2 { name="GreyListChIP"; version="1.4.1"; sha256="18fxm3mns373ljdsc6aqm9k3m6088fhg095bg6gamyd99dyf7y9p"; depends=[BSgenome GenomeInfoDb GenomicAlignments GenomicRanges MASS Rsamtools rtracklayer SummarizedExperiment]; }; + Guitar = derive2 { name="Guitar"; version="1.10.0"; sha256="1mgswk1gr2y5ilj8v07rincibg941i4rbmk8nd73xvw2pg83gvx8"; depends=[GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges Rsamtools rtracklayer]; }; + Gviz = derive2 { name="Gviz"; version="1.16.5"; sha256="0r83ml7jfpdn2286wh1614arla3ih5nqvjjnsb3n9883j2prakr4"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings biovizBase BSgenome digest GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges lattice latticeExtra matrixStats RColorBrewer Rsamtools rtracklayer S4Vectors XVector]; }; + HCsnip = derive2 { name="HCsnip"; version="1.12.0"; sha256="11sfhf931xnk6qmxmfiybfs5izgr932r3r0xxbbm96xbm6xxk7n5"; depends=[Biobase clusterRepro coin fpc impute randomForestSRC sigaR sm survival]; }; + HDF5Array = derive2 { name="HDF5Array"; version="1.0.2"; sha256="0df0xyn8f58vycyakx1xsv0jz43mkhbr3d9bb2cc0p5082hwk65a"; depends=[BiocGenerics IRanges rhdf5 S4Vectors]; }; + HDTD = derive2 { name="HDTD"; version="1.6.0"; sha256="0838l4fnfany068fz20vrcr4m4yb6di88i0whn8hyfjm8ws21461"; depends=[]; }; + HELP = derive2 { name="HELP"; version="1.30.0"; sha256="0aql69piqrfgav9fh3ff1byamd3c9k8nil3a09k4affdxl3nhqah"; depends=[Biobase]; }; + HEM = derive2 { name="HEM"; version="1.44.0"; sha256="1fj92nzkng5cgy2wkifjmcpn2lfqw3ginyxzs36pxryz12v8yg2f"; depends=[Biobase]; }; + HIBAG = derive2 { name="HIBAG"; version="1.8.3"; sha256="0s6vcx03kzxyqddzr7h3qhf6m9ax7l9n9jx9amk2f046wfhy4z7d"; depends=[]; }; + HMMcopy = derive2 { name="HMMcopy"; version="1.14.0"; sha256="0ac2d8byinx6li1r622k960lpyihgf5xp0jdifvl5dmn1va0gmdl"; depends=[geneplotter IRanges]; }; + HTSFilter = derive2 { name="HTSFilter"; version="1.12.0"; sha256="03bd29q6irgq6nqfp1grq3dzv1x1pz5bl2sx1z4714i75i8wildw"; depends=[Biobase DESeq DESeq2 edgeR]; }; + HTSanalyzeR = derive2 { name="HTSanalyzeR"; version="2.24.0"; sha256="0cmcihsqxacvxf4nan48i1f22bzz4g0j2vcn0vc3r4jirznxcjs6"; depends=[AnnotationDbi biomaRt BioNet cellHTS2 graph GSEABase igraph RankProd]; }; + HTSeqGenie = derive2 { name="HTSeqGenie"; version="4.2.0"; sha256="0v5m8ix7j6db2fa461w4c50rn7xp415gaa3dl78hwbhns30f0il0"; depends=[BiocGenerics BiocParallel Biostrings Cairo chipseq GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gmapR hwriter IRanges Rsamtools rtracklayer S4Vectors ShortRead SummarizedExperiment VariantAnnotation VariantTools]; }; + HTqPCR = derive2 { name="HTqPCR"; version="1.26.0"; sha256="0lk6qrq6in9y8xg1656m1j9mrwfajbadhr2ry7lyp8wx5acai7nz"; depends=[affy Biobase gplots limma RColorBrewer]; }; + Harman = derive2 { name="Harman"; version="1.0.2"; sha256="0v7szj4xh8xr4zg3p0x1gf7b278a6y8blz962ygj77pnccmqikf6"; depends=[Rcpp]; }; + Harshlight = derive2 { name="Harshlight"; version="1.44.0"; sha256="10dq78la4kby2zay69l3s9plrd271w5f8kmkmwxmscfqbv0zhi59"; depends=[affy altcdfenvs Biobase]; }; + Heatplus = derive2 { name="Heatplus"; version="2.18.0"; sha256="13rzsahx3a4w2s1v99kz4lg6sgll2md9ibf2jz7dkk8gafbn1yri"; depends=[RColorBrewer]; }; + HiTC = derive2 { name="HiTC"; version="1.16.0"; sha256="1rk3q4s4kpcbkm23ccw61p1isvrim3y3dhvi1kcs6yqbb3lg1nvl"; depends=[Biostrings GenomeInfoDb GenomicRanges IRanges Matrix RColorBrewer rtracklayer]; }; + HilbertCurve = derive2 { name="HilbertCurve"; version="1.2.2"; sha256="0gjv39l5sxsllc3c620ndnarvl4x2fd3i86pwy4wqy5riq5xxaph"; depends=[circlize GenomicRanges HilbertVis IRanges png]; }; + HilbertVis = derive2 { name="HilbertVis"; version="1.30.0"; sha256="0przsvy6zqs4chwn0m625h421zi7dpapma7wib6v8i5lf85d4d2a"; depends=[lattice]; }; + HilbertVisGUI = derive2 { name="HilbertVisGUI"; version="1.30.0"; sha256="0w2n511dkazajbm80kq9paypwphryf61x2rpfprc5va5wxhs36x8"; depends=[HilbertVis]; }; + HybridMTest = derive2 { name="HybridMTest"; version="1.16.0"; sha256="0g2cknzbj043m8gm8qps0mdnamcqg08pd40hm7fmz70piw7sjw3f"; depends=[Biobase fdrtool MASS survival]; }; + IHW = derive2 { name="IHW"; version="1.0.2"; sha256="1drhgvgl6gfzi0ii5dw86mw8bm6f008v07nbzn3865vq4l99kmm1"; depends=[BiocGenerics fdrtool lpsymphony slam]; }; + IMPCdata = derive2 { name="IMPCdata"; version="1.6.0"; sha256="155633pgv06qqch0x8isczm7i5w4azg99vfzbbx31xh7y0dawb8y"; depends=[rjson]; }; + INPower = derive2 { name="INPower"; version="1.8.0"; sha256="12xixf4wzsa5fbcp7prbj7lg0aswlcqcx6f6q2y6x34g7jyh047n"; depends=[mvtnorm]; }; + INSPEcT = derive2 { name="INSPEcT"; version="1.2.2"; sha256="1bmd1f662nf6s2aw2lg7pfq2d5rqbmpj7zp7wp6abc94gm8vsxzx"; depends=[Biobase BiocGenerics BiocParallel deSolve GenomicAlignments GenomicFeatures GenomicRanges IRanges preprocessCore pROC rootSolve Rsamtools S4Vectors]; }; + IONiseR = derive2 { name="IONiseR"; version="1.2.3"; sha256="1dwdkqf493c19p5b3phbj4g364h0aj32szjq3n3h3rn8aw0cjs87"; depends=[BiocGenerics Biostrings data_table dplyr ggplot2 magrittr rhdf5 ShortRead tidyr XVector]; }; + IPPD = derive2 { name="IPPD"; version="1.20.0"; sha256="030pyqdmlqmriwcm3bikk0wf4qjhkrdjb306csr7327iqq4kbm0d"; depends=[bitops digest MASS Matrix XML]; }; + IRanges = derive2 { name="IRanges"; version="2.6.1"; sha256="06pyam3bjjfw2m3l86rda503lsz2jcg645lcnhvrz6qi0nv359yg"; depends=[BiocGenerics S4Vectors]; }; + ISoLDE = derive2 { name="ISoLDE"; version="1.0.2"; sha256="1nc3r8y49fgvgx0vj2m79cd5ywnm93a6vqy20cr1llg4fpnmdlb4"; depends=[]; }; + ITALICS = derive2 { name="ITALICS"; version="2.32.0"; sha256="18afl5gkrzh89wzmlpsfjzcm32yl1521dm2vrdhmy1kjjsy1g1f6"; depends=[affxparser DBI GLAD ITALICSData oligo oligoClasses pd_mapping50k_xba240]; }; + IVAS = derive2 { name="IVAS"; version="1.4.0"; sha256="10q5wmvwi10f81a0gss0shjv947yfghib1pk26cj04icr96v6b6f"; depends=[AnnotationDbi BiocGenerics doParallel foreach GenomeInfoDb GenomicFeatures GenomicRanges IRanges lme4 Matrix S4Vectors]; }; + Icens = derive2 { name="Icens"; version="1.44.0"; sha256="0aw92cq446dpwi6nnck72xvk67jwfr829klzbn9a6b0z53qmlb1w"; depends=[survival]; }; + IdMappingAnalysis = derive2 { name="IdMappingAnalysis"; version="1.16.0"; sha256="1q7s0zy9bx1ypca232yqj25k8g3w33078dp5ik48j1ga71bp1xwk"; depends=[Biobase boot mclust R_oo rChoiceDialogs RColorBrewer]; }; + IdMappingRetrieval = derive2 { name="IdMappingRetrieval"; version="1.20.0"; sha256="1z67dj5qil8l2acryqvax6v1qp0z4jnf1iiy1l87j09kyn2949p4"; depends=[AffyCompatible biomaRt ENVISIONQuery R_methodsS3 R_oo rChoiceDialogs RCurl XML]; }; + IdeoViz = derive2 { name="IdeoViz"; version="1.6.0"; sha256="111vqwx7cxi419jzcz3yqhzv4436flj1h839rimn5vhlk9dlq6zr"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges RColorBrewer rtracklayer]; }; + Imetagene = derive2 { name="Imetagene"; version="1.2.2"; sha256="1bfqjq3c62j5hirx95bi03q0mxnizgqsm6mf6snfd8b33752fy0r"; depends=[d3heatmap ggplot2 metagene shiny shinyBS shinyFiles shinythemes]; }; + ImmuneSpaceR = derive2 { name="ImmuneSpaceR"; version="1.0.2"; sha256="08nfnvchbimhdrywcf8bsghml5pwhb2ys2jyqh0nvmj9g19khhg5"; depends=[Biobase data_table ggplot2 gplots gtools pheatmap RCurl reshape2 Rlabkey scales]; }; + InPAS = derive2 { name="InPAS"; version="1.4.4"; sha256="0939f6ag20im9n8vq04k2nza1hl32mwm1xr9lyg4kpbq80gyscs4"; depends=[AnnotationDbi Biobase BiocParallel BSgenome cleanUpdTSeq depmixS4 GenomeInfoDb GenomicFeatures GenomicRanges Gviz IRanges limma preprocessCore S4Vectors seqinr]; }; + InteractionSet = derive2 { name="InteractionSet"; version="1.0.4"; sha256="05sa7rrgw7563af9fzy8r1ndhy9f8cd2ymxc9p9fd4xmw1yk31s9"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges Matrix S4Vectors SummarizedExperiment]; }; + IsoGeneGUI = derive2 { name="IsoGeneGUI"; version="2.8.0"; sha256="0sg1fqsblhxynm4yvh5jzkrjw7h7rqi3n5ck5996xd0r5zhyqd1q"; depends=[Biobase ff geneplotter goric Iso IsoGene jpeg multtest ORCME ORIClust orQA RColorBrewer Rcpp relimp tkrplot xlsx]; }; + JunctionSeq = derive2 { name="JunctionSeq"; version="1.2.4"; sha256="1allsshg9bbl0krx9as31g41px0fvk3hn00vis3saxshq95mcn76"; depends=[Biobase BiocGenerics BiocParallel DESeq2 genefilter geneplotter GenomicRanges Hmisc IRanges locfit plotrix S4Vectors statmod stringr SummarizedExperiment]; }; + KCsmart = derive2 { name="KCsmart"; version="2.30.0"; sha256="0fpmjdlnvrcj6s3pnrhvb09hm1ws2nqxw7is7rdx4grq1j21ppgj"; depends=[BiocGenerics KernSmooth multtest siggenes]; }; + KEGGREST = derive2 { name="KEGGREST"; version="1.12.3"; sha256="14p6506ml6l1h2j3pr1hda8475sa4rvph4vc1z3h84bj0czciibz"; depends=[Biostrings httr png]; }; + KEGGgraph = derive2 { name="KEGGgraph"; version="1.30.0"; sha256="14zwnncks3ayb4dwa2i08aqf7abyxcwpd95dag6si8fwhz1di4v9"; depends=[graph XML]; }; + KEGGprofile = derive2 { name="KEGGprofile"; version="1.14.0"; sha256="04997klqr44vi87zasvr41bgjjn2gfa3abv23zqjmj4xqr5693r8"; depends=[AnnotationDbi biomaRt KEGG_db KEGGREST png TeachingDemos XML]; }; + LBE = derive2 { name="LBE"; version="1.40.0"; sha256="174bwp93lnb1lg19yd1r1piza23zm8wi2mnk3kk0r79hj9y1vx04"; depends=[]; }; + LEA = derive2 { name="LEA"; version="1.4.0"; sha256="1srrabmvb9ghvhi3vqmr348as0vjzqfmcln2lclsc6za5prqnaja"; depends=[]; }; + LMGene = derive2 { name="LMGene"; version="2.28.0"; sha256="0d0nvkcrg8hqrjlhhmcw1194w2aw363xr5dfqv9r10r618x5s5zy"; depends=[affy Biobase multtest survival]; }; + LOLA = derive2 { name="LOLA"; version="1.2.2"; sha256="0fjs5z64s6xd62161qkpb38dblsl9dycw4ij0kggrkrjsfqnnapa"; depends=[BiocGenerics data_table GenomicRanges IRanges S4Vectors]; }; + LPE = derive2 { name="LPE"; version="1.46.0"; sha256="14j8ha907nsj382hx67ci0675n15j7anxg95kz7v4lrd5w6bbb5f"; depends=[]; }; + LPEadj = derive2 { name="LPEadj"; version="1.32.0"; sha256="1lx2p99dyjg1vamglnc2j1qan52wpz2sn9lyzhq9gxh77716rxlj"; depends=[LPE]; }; + LVSmiRNA = derive2 { name="LVSmiRNA"; version="1.22.0"; sha256="0cx9msy13cdihpdl92xz66c9hi5lblmfm113zmd6p7zzpfjzb8rg"; depends=[affy Biobase BiocGenerics limma MASS quantreg SparseM vsn zlibbioc]; }; + LedPred = derive2 { name="LedPred"; version="1.6.1"; sha256="1ryggr2n2rhsxcgxy3rkxhvvjxcmbj8rm274qyzi0i7na4m98jkq"; depends=[akima e1071 ggplot2 irr jsonlite plot3D plyr RCurl ROCR testthat]; }; + Linnorm = derive2 { name="Linnorm"; version="1.0.6"; sha256="1s66vzwyrmxwd3y52nxikcplbl5crvcamr0cfyg5hw5hmhbx4n1g"; depends=[limma MASS Rcpp RcppArmadillo statmod]; }; + LiquidAssociation = derive2 { name="LiquidAssociation"; version="1.26.0"; sha256="04g4rh6digbdymlbbblvscsdvkq6nxnbsc7g5y2zp1afn175wg45"; depends=[Biobase geepack org_Sc_sgd_db yeastCC]; }; + LowMACA = derive2 { name="LowMACA"; version="1.4.2"; sha256="1aj59sxnbxwl5lz9nk18jb6n2da0qr3b3zz2fiw5z5bd8qd06aj1"; depends=[BiocParallel Biostrings cgdsr data_table LowMACAAnnotation motifStack RColorBrewer reshape2 stringr]; }; + LymphoSeq = derive2 { name="LymphoSeq"; version="1.0.2"; sha256="0gii3d4w8219p8lc4isbkh3y6hhz2mhgr3qb5cm7hq0v10a9w85w"; depends=[circlize data_table dplyr ggplot2 ineq LymphoSeqDB plyr RColorBrewer reshape VennDiagram]; }; + M3D = derive2 { name="M3D"; version="1.6.2"; sha256="0z20kfhx8p8l6c2lh4mhnmp8ib8jcb3ld5h2sw7n5prsd22qs1mv"; depends=[BiocGenerics BiSeq GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; + MAIT = derive2 { name="MAIT"; version="1.6.0"; sha256="0qbpdilk9h6sz64p4r18iay9v8kh19y3sgik9h8mmlywfvjl2d36"; depends=[agricolae CAMERA caret class e1071 gplots MASS pls plsgenomics Rcpp xcms]; }; + MANOR = derive2 { name="MANOR"; version="1.44.0"; sha256="1h3ia41anx3bg2nzfa40vjzgrd30aayprlhj2amgiidv37xam7jd"; depends=[GLAD]; }; + MBASED = derive2 { name="MBASED"; version="1.6.0"; sha256="1a69ymyn817qn5xdm1lnc5nf1iir8sshj4awkn2vm7nc5zf0yyw6"; depends=[BiocGenerics BiocParallel GenomicRanges RUnit SummarizedExperiment]; }; + MBAmethyl = derive2 { name="MBAmethyl"; version="1.6.0"; sha256="1wjd3v2kj1g7hc39rg5g8npvppyrdp99fvcqiyv7fybpp4i106ws"; depends=[]; }; + MBCB = derive2 { name="MBCB"; version="1.26.0"; sha256="1hv14jmmh8vzispdbww3hpbkb57naxqy7wcy5ilc1kz2sg4a6h30"; depends=[preprocessCore tcltk2]; }; + MBttest = derive2 { name="MBttest"; version="1.0.0"; sha256="1df76rma5j9nc4pzz7ql9zs08hzvsclh8crhrh3pwgidny6i485h"; depends=[gplots gtools]; }; + MCRestimate = derive2 { name="MCRestimate"; version="2.28.0"; sha256="02zlkrkzia1398wxvrqgdhika3v7nnkcy4w6bd0s1c3mzri3br4i"; depends=[Biobase e1071 golubEsets pamr randomForest RColorBrewer]; }; + MEAL = derive2 { name="MEAL"; version="1.2.3"; sha256="0jji6c0g6ks13g52v0xdzk97g6ifh2jkphlbwhs1qz930wmzmyk1"; depends=[Biobase BiocGenerics DMRcate doParallel GenomicRanges ggplot2 IRanges limma minfi MultiDataSet permute S4Vectors SNPassoc snpStats sva vegan]; }; + MEDIPS = derive2 { name="MEDIPS"; version="1.22.0"; sha256="1c6p2jkx3p8fgxah1qs74ia4934m9cbw8gdmm9kig1sfipmw5rjs"; depends=[biomaRt Biostrings BSgenome DNAcopy edgeR GenomicRanges gtools IRanges preprocessCore Rsamtools rtracklayer]; }; + MEDME = derive2 { name="MEDME"; version="1.32.0"; sha256="062dqr4l6fg6azalfl93zrfzj7xnx9fn0l4gbn5gmmvxz5ldqp86"; depends=[Biostrings drc MASS]; }; + MEIGOR = derive2 { name="MEIGOR"; version="1.6.0"; sha256="1bmb27ka2d4khghzp8wja5aqh82jlkqsjiqg3vc550k02g9yyf2j"; depends=[CNORode deSolve Rsolnp snowfall]; }; + MGFM = derive2 { name="MGFM"; version="1.6.0"; sha256="1ly89riycn4x92q58jhmdpqpk3y069cpipbajwla59iczjl333qj"; depends=[annotate AnnotationDbi]; }; + MIMOSA = derive2 { name="MIMOSA"; version="1.10.2"; sha256="0c82szbvk84h8p4zws8za1lk0hchf2n9p38m9dav8g8p8p2mvm37"; depends=[Biobase coda data_table Formula ggplot2 Kmisc MASS MCMCpack modeest plyr pracma Rcpp RcppArmadillo reshape scales testthat]; }; + MLInterfaces = derive2 { name="MLInterfaces"; version="1.52.0"; sha256="17plgfwj8n4861rpg4a5qlp951v5wsdr6p7xplb2did0hz555lw2"; depends=[annotate Biobase BiocGenerics cluster fpc gbm gdata genefilter ggvis hwriter MASS mlbench pls RColorBrewer rda rgl rpart sfsmisc shiny threejs]; }; + MLP = derive2 { name="MLP"; version="1.20.0"; sha256="0s923x14xdbfqa6vnmsijfw7bifvkj4dpbvkqnnppgdm0n0y42gq"; depends=[affy AnnotationDbi gdata gmodels gplots gtools plotrix]; }; + MLSeq = derive2 { name="MLSeq"; version="1.12.2"; sha256="045nbqn369lisnn5b6y1lq4xhzd724dv3b58zcl3mgi3yja3rzq5"; depends=[Biobase caret DESeq2 edgeR limma randomForest]; }; + MMDiff = derive2 { name="MMDiff"; version="1.12.0"; sha256="11gzg1qshfrhf7m7w60pqfndpq9xbjns1kzq83fhmg3xydw8byb5"; depends=[Biobase DiffBind GenomicRanges GMD IRanges Rsamtools]; }; + MMDiff2 = derive2 { name="MMDiff2"; version="1.0.2"; sha256="05nnk927h0bywcwkqasyhb6zq8iky18bcjhiavmjbm6rs44x8r38"; depends=[Biobase Biostrings BSgenome GenomicRanges ggplot2 locfit RColorBrewer Rsamtools S4Vectors shiny]; }; + MPFE = derive2 { name="MPFE"; version="1.8.0"; sha256="0ipsvsan3z0z7ax94fg7vmmzyhzh9184nd0k1b26sr0ddqk36n8k"; depends=[]; }; + MSGFgui = derive2 { name="MSGFgui"; version="1.6.2"; sha256="1b7bv47avxhvnr0ilbsfmr2yg6q3k5m62qkmxn9fapar0c7w6my1"; depends=[MSGFplus mzID mzR shiny shinyFiles xlsx]; }; + MSGFplus = derive2 { name="MSGFplus"; version="1.6.2"; sha256="04jqff48h48s7kwhai76y1y80hwgpw8x5svl0xzb6qvqwz12lsc9"; depends=[mzID]; }; + MSnID = derive2 { name="MSnID"; version="1.6.0"; sha256="0xgqq5gx9jgk0hflbmwsbp9l3652mm2l0jkyanxqbwn5ys6k9l2n"; depends=[Biobase data_table doParallel foreach iterators MSnbase mzID ProtGenerics R_cache Rcpp reshape2]; }; + MSnbase = derive2 { name="MSnbase"; version="1.20.7"; sha256="0540ha72mkd9paylq5qzpcxw63d6b4rzjplg2rdixzzdhfg5rcgc"; depends=[affy Biobase BiocGenerics BiocParallel digest ggplot2 impute IRanges lattice MALDIquant mzID mzR pcaMethods plyr preprocessCore ProtGenerics Rcpp reshape2 S4Vectors vsn]; }; + MSstats = derive2 { name="MSstats"; version="3.4.0"; sha256="0fkdfvd0fm5p5x5a23n2hnysawl6idwni0ib1a4ckdgx9mb183dm"; depends=[data_table ggplot2 ggrepel gplots limma lme4 marray minpack_lm MSnbase preprocessCore Rcpp reshape reshape2 survival]; }; + MVCClass = derive2 { name="MVCClass"; version="1.46.0"; sha256="1aa63zn86m9nc3pr9y4rnzh5irfmkqkxbgbx5qf87x0rxnl7b8c2"; depends=[]; }; + MantelCorr = derive2 { name="MantelCorr"; version="1.42.0"; sha256="1123cvr1psl5hvin8fw3zx3rp0317pfs7jzliyl1namkyz86nmyy"; depends=[]; }; + MassArray = derive2 { name="MassArray"; version="1.24.0"; sha256="1ijrsgfzfqg4knvfdd2jlhzc0d58q90phwjkfklxq416r68za7sh"; depends=[]; }; + MassSpecWavelet = derive2 { name="MassSpecWavelet"; version="1.38.0"; sha256="0xyilbr0qcli8qkj5nj3zydgpbx6xlqf9877vyyb471isd0h764p"; depends=[waveslim]; }; + MatrixRider = derive2 { name="MatrixRider"; version="1.4.0"; sha256="1f114p00splb8rkz0s4l44m16xf4i00ig6h56jvca3i9knhv9g4p"; depends=[Biostrings IRanges S4Vectors TFBSTools XVector]; }; + MeSHDbi = derive2 { name="MeSHDbi"; version="1.8.0"; sha256="1jf4jx7cybivlasmlsn369fwcjv4jyid0i5p7aj5hqs9cb48kzfz"; depends=[AnnotationDbi Biobase BiocGenerics RSQLite]; }; + MeSHSim = derive2 { name="MeSHSim"; version="1.4.0"; sha256="1dgvpqfg41kawmdy9vag6ysm3iwkfijc48blw6rr5pbjmx75f3wg"; depends=[RCurl XML]; }; + MeasurementError_cor = derive2 { name="MeasurementError.cor"; version="1.44.0"; sha256="1snrpm5dx9rwb2i7g0y6q80cdjmmw5pcybifq3z1li86i5w1llic"; depends=[]; }; + MergeMaid = derive2 { name="MergeMaid"; version="2.44.0"; sha256="1dblfravkmvjcwmd9c9c5gzl68ygczsvpydcz6n2qjfnvv2qz3cq"; depends=[Biobase MASS survival]; }; + Mergeomics = derive2 { name="Mergeomics"; version="1.0.0"; sha256="01fz5ms2giwj18irr2rdm98hzg0hscai9zi3zwyqmkjwpifz845g"; depends=[]; }; + Metab = derive2 { name="Metab"; version="1.6.0"; sha256="0v6003ra26lm7gcadlc8ijn3lfiqrbc3i3bqwfmgsrd477kb3ppg"; depends=[pander svDialogs xcms]; }; + MethPed = derive2 { name="MethPed"; version="1.0.2"; sha256="0ijvk0pmjgr0x12hv12p7lbvarlaz5pg7nc2nly8hh7hmv8y807p"; depends=[Biobase randomForest]; }; + MethTargetedNGS = derive2 { name="MethTargetedNGS"; version="1.4.0"; sha256="19yws0346kia30p4sjmikbsvzfynl920n8ici3wpmcks2vs1a1xd"; depends=[Biostrings gplots seqinr stringr]; }; + MethylAid = derive2 { name="MethylAid"; version="1.6.2"; sha256="1ih9s9jmixfa1h060y7sqmip1rwz32a445cfjhcff20bsjblld42"; depends=[Biobase BiocGenerics BiocParallel ggplot2 gridBase hexbin matrixStats minfi RColorBrewer shiny]; }; + MethylMix = derive2 { name="MethylMix"; version="1.6.0"; sha256="0waq027d51gnz6l883dph2srklzf3d1fwlan3khzcmi8yq75ciar"; depends=[doParallel foreach optimx RColorBrewer RPMM]; }; + MethylSeekR = derive2 { name="MethylSeekR"; version="1.12.0"; sha256="1x6kc2xl2jf8f6r2yjpybh51kk75xhmpb7m9j1zs1hzi0aqd0rz4"; depends=[BSgenome geneplotter GenomicRanges IRanges mhsmm rtracklayer]; }; + Mfuzz = derive2 { name="Mfuzz"; version="2.32.0"; sha256="17afgpshz7nb0kcdks19z6izb6hrmgy9rigzw3mvk488mxhczlw8"; depends=[Biobase e1071 tkWidgets]; }; + MiChip = derive2 { name="MiChip"; version="1.26.0"; sha256="0fddfvay8zjamb6gzmf6f6xvqjh163ss3wikf1a04ihj7if8x6nf"; depends=[Biobase]; }; + MiPP = derive2 { name="MiPP"; version="1.44.0"; sha256="0ffiyrkda0hwjg4l062kxx5rrp57q2f716gk6n3f8dicx938fc4d"; depends=[Biobase e1071 MASS]; }; + MiRaGE = derive2 { name="MiRaGE"; version="1.14.0"; sha256="02x8p9l48g0b7s2pjq5j3w4dxnr6r0495di1y7sknrsbc2gdczib"; depends=[AnnotationDbi Biobase BiocGenerics S4Vectors]; }; + MineICA = derive2 { name="MineICA"; version="1.12.0"; sha256="0155kj48kxajd4sg1ajvppk1jss1wqkkyjz6xhzr3xpl9g2jnh51"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt cluster colorspace fastICA foreach fpc ggplot2 GOstats graph gtools Hmisc igraph JADE lumi lumiHumanAll_db marray mclust plyr RColorBrewer Rgraphviz scales xtable]; }; + MinimumDistance = derive2 { name="MinimumDistance"; version="1.16.0"; sha256="1yw8ym00bkvn955d8yrz068yxszy3jv7gh55z3357k9spf1r9kmi"; depends=[Biobase BiocGenerics data_table DNAcopy ff foreach GenomeInfoDb GenomicRanges IRanges lattice matrixStats oligoClasses S4Vectors SummarizedExperiment VanillaICE]; }; + Mirsynergy = derive2 { name="Mirsynergy"; version="1.8.1"; sha256="1zs09wm9n51d1bswbl6q9xmd5kb9rgbjgmqniq4nril18cqksqnp"; depends=[ggplot2 gridExtra igraph Matrix RColorBrewer reshape scales]; }; + MmPalateMiRNA = derive2 { name="MmPalateMiRNA"; version="1.22.0"; sha256="05fnam7yak4jxjwmkzmczwrfvbqw7y91layz6g7kgzz56ifqj33s"; depends=[Biobase lattice limma statmod vsn xtable]; }; + MoPS = derive2 { name="MoPS"; version="1.6.0"; sha256="19bkydam974lam2v7ljzmj6xs8hw5ggd839j5mld1in44q7p8y3h"; depends=[Biobase]; }; + MotIV = derive2 { name="MotIV"; version="1.28.0"; sha256="1yzx1m1csi9x8i0jljcqla3hgwly3yb9r710q23f5kswir3qdawn"; depends=[BiocGenerics Biostrings IRanges lattice rGADEM S4Vectors]; }; + MotifDb = derive2 { name="MotifDb"; version="1.14.0"; sha256="05pbqrq547am6l74cv3pqnlw6kiasnlfx9hgicfp290ir6ws0clx"; depends=[BiocGenerics Biostrings IRanges rtracklayer S4Vectors]; }; + Mulcom = derive2 { name="Mulcom"; version="1.22.0"; sha256="08h94yykypmm5zshmf0i547g6lw4bsyn5zw8swgpiv4c2p46drhd"; depends=[Biobase fields]; }; + MultiDataSet = derive2 { name="MultiDataSet"; version="1.0.2"; sha256="05gx3kdzrc1lyw2xx1w2vw0c562x7cj3raqi6mafs40dlxyplf0h"; depends=[Biobase BiocGenerics GenomicRanges IRanges minfi S4Vectors SummarizedExperiment]; }; + MultiMed = derive2 { name="MultiMed"; version="1.6.0"; sha256="1shl11v2m926c2ccypj561rb17h490bndw2nflcpg19bgw43smj6"; depends=[]; }; + NCIgraph = derive2 { name="NCIgraph"; version="1.20.0"; sha256="08kjg6ynynbccdi57hns1bxnr9cjh07w71rah8zkx2irsgg22485"; depends=[graph KEGGgraph R_methodsS3 RBGL RCytoscape]; }; + NGScopy = derive2 { name="NGScopy"; version="1.6.0"; sha256="07hrqv4xdsi2w3ln4lbjgfkyqv22m9nj9zwcaxdxhy8sr3dr7zzw"; depends=[changepoint rbamtools Xmisc]; }; + NOISeq = derive2 { name="NOISeq"; version="2.16.0"; sha256="0j2698rsdbm76rcdc9b1ddhrs7ka0qwi51p8cqzcymkjks4pb4jh"; depends=[Biobase Matrix]; }; + NTW = derive2 { name="NTW"; version="1.22.0"; sha256="094lwailsdl889h880igkwmg1vkbs4k44m5l9zdncy2d4cbmz9fx"; depends=[mvtnorm]; }; + NanoStringDiff = derive2 { name="NanoStringDiff"; version="1.2.0"; sha256="00bw33qa0szb0g46ni35jaxk848pbfqcy5z7jv3sbfc3kfv2qzki"; depends=[Biobase matrixStats]; }; + NanoStringQCPro = derive2 { name="NanoStringQCPro"; version="1.4.0"; sha256="1y68zx0psvnyfxbslw59spdv054shrfj3m8l30f13x734ff2bcd2"; depends=[AnnotationDbi Biobase knitr NMF org_Hs_eg_db png RColorBrewer]; }; + NarrowPeaks = derive2 { name="NarrowPeaks"; version="1.16.0"; sha256="08x5hv0qpkg241pxzgfs5pbs5vmf7bj36hdhr1iakmqic3p88xaf"; depends=[BiocGenerics CSAR fda GenomeInfoDb GenomicRanges ICSNP IRanges S4Vectors]; }; + NetPathMiner = derive2 { name="NetPathMiner"; version="1.8.0"; sha256="1brr77b0gj4mbfcxiwk0ip11shj1829i12ivwjhls2f2iwn72s4b"; depends=[igraph]; }; + NetSAM = derive2 { name="NetSAM"; version="1.12.0"; sha256="16hcg60fnqznjj218ms3i9yz8sw9r5fgbcbg7m6fbqdf9wvblbdn"; depends=[graph igraph seriation]; }; + NormqPCR = derive2 { name="NormqPCR"; version="1.18.0"; sha256="1h2x08ns8q4fr26mk3sqn65rqb3j6i7a0ni3fasbjsbc6yhbi2lf"; depends=[Biobase qpcR RColorBrewer ReadqPCR]; }; + NuPoP = derive2 { name="NuPoP"; version="1.22.0"; sha256="0q0qh9xwlz6flhqzvmc438h0ywj66y794mzlqyjm648qc33csd2x"; depends=[]; }; + OCplus = derive2 { name="OCplus"; version="1.46.0"; sha256="1qib8knxymmdy0a7afmjg1zvrpb4nx1mkdc53zpdicjrv1k64v6h"; depends=[akima multtest]; }; + OGSA = derive2 { name="OGSA"; version="1.2.0"; sha256="17cc03pv4lgs7306mhwd62hnkl74gvqpaw71rk8sas2iy0rd2xnf"; depends=[Biobase gplots limma]; }; + OLIN = derive2 { name="OLIN"; version="1.50.0"; sha256="0a4ahksrng4bvcslx7mw6q3gf6wlgkskqigk1axaxa6jy6jyg70c"; depends=[limma locfit marray]; }; + OLINgui = derive2 { name="OLINgui"; version="1.46.0"; sha256="1vdkxkbwxf42fp9y24xqd598ksif4najbp77s689qr2hbi3mw0rp"; depends=[marray OLIN tkWidgets widgetTools]; }; + OSAT = derive2 { name="OSAT"; version="1.20.0"; sha256="0hccp457gqb2c1qs9jlwglvhm8dqazxgk3qj6cidh9wmdd97ppcw"; depends=[]; }; + OTUbase = derive2 { name="OTUbase"; version="1.22.0"; sha256="0i14424m00ivvssb9qax48dxk2pm68hkwykd1xqpl38p0p4d1fh5"; depends=[Biobase Biostrings IRanges S4Vectors ShortRead vegan]; }; + OmicCircos = derive2 { name="OmicCircos"; version="1.10.0"; sha256="0s55hrr712z15v0svrijgr0gvn5r8c39jyff0ihl7wyddvyky982"; depends=[GenomicRanges]; }; + OmicsMarkeR = derive2 { name="OmicsMarkeR"; version="1.4.2"; sha256="05vjkr2gaa1w8lnrxpmqnf1a89clwlzjq4vb9nxmjk21gp6dgqf8"; depends=[assertive assertive_base caret caTools data_table DiscriMiner e1071 foreach gbm glmnet pamr permute plyr randomForest]; }; + OncoScore = derive2 { name="OncoScore"; version="1.0.2"; sha256="1wynyfc76vz1qinfvbyzgawcwwyic1khdsmjqkr2b8mcs3sb97xs"; depends=[biomaRt]; }; + OncoSimulR = derive2 { name="OncoSimulR"; version="2.2.2"; sha256="06i2scrv2dh5yhpaf2dnhjmmdknm0x06597baxk85k95q1m4zpg2"; depends=[data_table graph gtools igraph RColorBrewer Rcpp Rgraphviz]; }; + OperaMate = derive2 { name="OperaMate"; version="1.4.0"; sha256="0qn2r3347khd671yf200p2wfbqysi2k4wk0y52vr1kji39shjqy4"; depends=[fBasics ggplot2 gProfileR gridExtra pheatmap reshape2 stabledist]; }; + OrderedList = derive2 { name="OrderedList"; version="1.44.0"; sha256="0z32bp9gjy0sf7qw626p2dignrcq22h6l5zwza2ap5c0hr0m7l2r"; depends=[Biobase twilight]; }; + OrganismDbi = derive2 { name="OrganismDbi"; version="1.14.1"; sha256="0h48qkliiyl4fk1dnk2310gy76bj7nhgnw92cxllvbcq4caakv52"; depends=[AnnotationDbi Biobase BiocGenerics BiocInstaller GenomicFeatures GenomicRanges graph IRanges RBGL RSQLite S4Vectors]; }; + Oscope = derive2 { name="Oscope"; version="1.2.0"; sha256="0p9ri0djqf87jbb6pcjz5m8l0vgjc04mspdahqaj258yg2zgkvdp"; depends=[BiocParallel cluster EBSeq testthat]; }; + OutlierD = derive2 { name="OutlierD"; version="1.36.0"; sha256="1carw9ylv7gwcawfdpx3aahbw1hnglila3miry5vhg978lk662f2"; depends=[Biobase quantreg]; }; + PAA = derive2 { name="PAA"; version="1.7.1"; sha256="1kgqb4q6jmr34w7pkgksbzbhvvlyr57xgv7k17hibggy0b1ykp1j"; depends=[e1071 gplots gtools limma MASS mRMRe randomForest Rcpp ROCR sva]; }; + PADOG = derive2 { name="PADOG"; version="1.14.0"; sha256="1s1adlswz3na5k072nbsp419ix75jg4h94jgg1w54730dymphasm"; depends=[AnnotationDbi Biobase doRNG foreach GSA hgu133a_db hgu133plus2_db KEGG_db KEGGdzPathwaysGEO limma nlme]; }; + PANR = derive2 { name="PANR"; version="1.18.0"; sha256="1b4r8bz22rfykysbp2cfxa98gq2hsig8nx2kfizx5z7z28gnsfba"; depends=[igraph MASS pvclust RedeR]; }; + PAPi = derive2 { name="PAPi"; version="1.12.0"; sha256="1dvhghn0g7ka2qvfyj785ma6pm25p7j8j76cqwjhg9n8kja9999i"; depends=[KEGGREST svDialogs]; }; + PAnnBuilder = derive2 { name="PAnnBuilder"; version="1.36.0"; sha256="1s2b0s5pb2yhji756y21sy22sypvp3zkmdg7jv7xnsrrnvkqjnqd"; depends=[AnnotationDbi Biobase DBI RSQLite]; }; + PCAN = derive2 { name="PCAN"; version="1.0.2"; sha256="1rkgkash3y07srq2y5r0hrhs8gzzwn739g5jhjdmky73m7xbdc3p"; depends=[BiocParallel]; }; + PCpheno = derive2 { name="PCpheno"; version="1.34.0"; sha256="0y93qv6gghr461rqbq11vl0khf25n6pvrqzszybwbrw9q6hynzhw"; depends=[annotate AnnotationDbi Biobase Category GO_db graph GSEABase KEGG_db ppiData ppiStats ScISI SLGI]; }; + PECA = derive2 { name="PECA"; version="1.8.0"; sha256="0qm40zwmbzj06z18k8wyqvlk6rvv70h7m8g4zrrslsjdx8anhzll"; depends=[affy aroma_affymetrix aroma_core genefilter limma preprocessCore ROTS]; }; + PGA = derive2 { name="PGA"; version="1.2.2"; sha256="13a4q8dldyp2djc2f33w8kj6vpaa7xzymf3p1l47mmv6gz9n17yv"; depends=[AnnotationDbi biomaRt Biostrings customProDB data_table GenomicFeatures GenomicRanges ggplot2 IRanges Nozzle_R1 pheatmap RCurl Rsamtools RSQLite rTANDEM rtracklayer S4Vectors stringr VariantAnnotation]; }; + PGSEA = derive2 { name="PGSEA"; version="1.46.0"; sha256="1sx7ffg0sjzs9hxh1fhp0149h6j4fhaqqrq56aanmacqpcd8lhna"; depends=[annaffy AnnotationDbi Biobase GO_db KEGG_db]; }; + PICS = derive2 { name="PICS"; version="2.16.0"; sha256="0gn1dqmhii2ys95gs85sm812kgw2pnph7mv6yml0xg0929rph3pa"; depends=[BiocGenerics GenomicAlignments GenomicRanges IRanges Rsamtools S4Vectors]; }; + PING = derive2 { name="PING"; version="2.16.0"; sha256="13yhwmcvhcvn99x6czq09zhrqaw0p644iw3jhw2gv3r93q39blci"; depends=[BiocGenerics BSgenome chipseq fda GenomicRanges Gviz IRanges PICS S4Vectors]; }; + PLPE = derive2 { name="PLPE"; version="1.32.0"; sha256="0i114wl9w4ka7w8w1jllfcq436mgpjkxaaymbxn81kfjw3jp4pql"; depends=[Biobase LPE MASS]; }; + PREDA = derive2 { name="PREDA"; version="1.18.0"; sha256="10bnsf62vlxzymwlh683g0asmkwldgr66fwfxhdlk807lh4phi8k"; depends=[annotate Biobase lokern multtest]; }; + PROMISE = derive2 { name="PROMISE"; version="1.24.0"; sha256="04wd1s0ki10scspd48h2m0y5wzxab2q6jd8farnca62sr7nzz46x"; depends=[Biobase GSEABase]; }; + PROPER = derive2 { name="PROPER"; version="1.4.2"; sha256="1pqa3k4id6j1j8nwrp4ax3fbpxc9vhkyddy9vylg0s6l5c3jnqkh"; depends=[edgeR]; }; + PROcess = derive2 { name="PROcess"; version="1.48.0"; sha256="0dna1smq8phmm2xd4928wbr2y9a4l3yv98ss8ida1fxmbxhy3sxy"; depends=[Icens]; }; + PSEA = derive2 { name="PSEA"; version="1.6.0"; sha256="07bsdx8vclk2mjpq65zqgzx8l9pb31vj00j1qi3krk2gjb64pj1j"; depends=[Biobase MASS]; }; + PSICQUIC = derive2 { name="PSICQUIC"; version="1.10.0"; sha256="1psivm4zlg0nidg0kzy61m0my0y8pdjwprlyzcidbjqal1s8mpzc"; depends=[BiocGenerics biomaRt httr IRanges plyr RCurl]; }; + PWMEnrich = derive2 { name="PWMEnrich"; version="4.8.2"; sha256="1afyrrqdxacnnx1r0pzqp1nhbjrb0wqaamycvxmap9x0nq96a6ww"; depends=[BiocGenerics Biostrings evd gdata seqLogo]; }; + PanVizGenerator = derive2 { name="PanVizGenerator"; version="1.0.3"; sha256="0n3i9385zq09jqwp81q869h5qk4xjnrnx7mlcsyng087h2sgnmvh"; depends=[FindMyFriends igraph jsonlite pcaMethods shiny]; }; + Path2PPI = derive2 { name="Path2PPI"; version="1.2.2"; sha256="00cbchrvqwxdv777f3rbgdqj127wi5383gk7j0amxvdx9xrkjyp1"; depends=[igraph]; }; + PathNet = derive2 { name="PathNet"; version="1.12.0"; sha256="12wv9izq6hk27v2x8dv7mfvp9s51jyjydwdd2vb44a6d1pz8fn94"; depends=[]; }; + Pbase = derive2 { name="Pbase"; version="0.12.2"; sha256="1cl9j8s5hxib5wzj42rbp747ckbidni5dii6qxylp89msvp1wlia"; depends=[Biobase BiocGenerics biomaRt Biostrings cleaver GenomicRanges Gviz IRanges MSnbase mzID mzR Pviz Rcpp rtracklayer S4Vectors]; }; + PhenStat = derive2 { name="PhenStat"; version="2.6.0"; sha256="0f69r7qg6cbpmlrbcz8ddmcfkzx5bixry0nksmkfbf6hbw08pgn1"; depends=[car logistf MASS nlme nortest]; }; + Polyfit = derive2 { name="Polyfit"; version="1.6.0"; sha256="1szx61apdn014496qzr5aqzy9nfyvnbhc7w949kxmw1vrgjkrdmc"; depends=[DESeq]; }; + Prize = derive2 { name="Prize"; version="1.2.0"; sha256="0birhqvk5myb1j41hffy71dmshc43vfx5qd9rnpwylq66dp9f9f9"; depends=[diagram ggplot2 gplots matrixcalc reshape2 stringr]; }; + ProCoNA = derive2 { name="ProCoNA"; version="1.10.0"; sha256="0hh21hdhgaf63mbbfi5pnpds2bgkybnr1xrc0w2siqnyfvva1613"; depends=[BiocGenerics flashClust GOstats MSnbase WGCNA]; }; + Prostar = derive2 { name="Prostar"; version="1.4.12"; sha256="0720rlql0wq9spxrr438gsjn3xd7hci6vssdxa1mqq1p8xcv12ik"; depends=[DAPAR DAPARdata data_table DT rhandsontable shiny shinyAce shinyjs]; }; + ProtGenerics = derive2 { name="ProtGenerics"; version="1.4.0"; sha256="15n8ykfwh8zng8px25qybskwcr627xwap3wzz3qs8g9mgxk69avn"; depends=[]; }; + ProteomicsAnnotationHubData = derive2 { name="ProteomicsAnnotationHubData"; version="1.2.2"; sha256="1z5708sh0ar98xyrj3xpl87pn9zwj19wa2yq30kspp84kl924dz4"; depends=[AnnotationHub AnnotationHubData Biobase BiocInstaller Biostrings GenomeInfoDb MSnbase mzR RCurl]; }; + PureCN = derive2 { name="PureCN"; version="1.0.4"; sha256="1nprrvr5mfccji6iw7cfwvi1d087nxa43l30lvi0fkqnaw5ba7x2"; depends=[data_table DNAcopy GenomeInfoDb GenomicRanges IRanges RColorBrewer S4Vectors SummarizedExperiment VariantAnnotation]; }; + Pviz = derive2 { name="Pviz"; version="1.6.2"; sha256="1kqamr8ir84jy6ija3y3v99wadrfajwycwb687x9l219a0l8h5k4"; depends=[Biostrings biovizBase data_table GenomicRanges Gviz IRanges]; }; + QDNAseq = derive2 { name="QDNAseq"; version="1.8.1"; sha256="1r9j3324qc3r597gry39jbkvzhwgmsqkn8ss5z78k84b97n7raz9"; depends=[Biobase CGHbase CGHcall DNAcopy GenomicRanges IRanges matrixStats R_utils Rsamtools]; }; + QUALIFIER = derive2 { name="QUALIFIER"; version="1.16.1"; sha256="00303dl9sypzl2zii1jyjmjvcmq4ff5qqy5i4aavzq1d82slf5g4"; depends=[Biobase data_table flowCore flowViz flowWorkspace hwriter lattice latticeExtra MASS ncdfFlow reshape XML]; }; + QUBIC = derive2 { name="QUBIC"; version="1.0.3"; sha256="12qrk97m42ifqj6mk8alrhr4pxqddb2ca23raf528hxphc6z7hml"; depends=[biclust Matrix Rcpp RcppArmadillo]; }; + QuartPAC = derive2 { name="QuartPAC"; version="1.4.0"; sha256="1gw79h59xl45k89hj2d3l964y7w61svwlyjibz17z1r2pxc9vzj1"; depends=[data_table GraphPAC iPAC SpacePAC]; }; + QuasR = derive2 { name="QuasR"; version="1.12.0"; sha256="15f9xqvhf7c57l12xapm4jfm32np0y8lgi31vp44dwz281gxh61q"; depends=[Biobase BiocGenerics BiocInstaller BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges IRanges Rbowtie Rsamtools rtracklayer S4Vectors ShortRead zlibbioc]; }; + QuaternaryProd = derive2 { name="QuaternaryProd"; version="1.0.2"; sha256="152iby14x0xx8h05c1c5wqk6ndv38hl3zzwj7iiw9m2apbfms9fs"; depends=[Rcpp]; }; + R3CPET = derive2 { name="R3CPET"; version="1.4.2"; sha256="1cv4dxlvxdbcynm49syajhlrk9vak54v6gmljsbry0g6hjiyfiv1"; depends=[BiocGenerics clues clValid data_table GenomeInfoDb GenomicRanges ggbio ggplot2 Hmisc igraph IRanges pheatmap Rcpp RCurl reshape2 S4Vectors]; }; + R453Plus1Toolbox = derive2 { name="R453Plus1Toolbox"; version="1.22.0"; sha256="11clxpbkzkvjrj6s0415285ajjziymmn5hgz61n61sjxm08al6qj"; depends=[Biobase BiocGenerics biomaRt Biostrings BSgenome GenomicRanges IRanges R2HTML Rsamtools S4Vectors ShortRead SummarizedExperiment TeachingDemos VariantAnnotation xtable XVector]; }; + R4RNA = derive2 { name="R4RNA"; version="1.0.0"; sha256="0v6sl6xxnwkkkvs2j496kv9hqk7f5lbgpgk39fz2pyvxysccwi5y"; depends=[Biostrings]; }; + RBGL = derive2 { name="RBGL"; version="1.48.1"; sha256="1k82zcbyfx3p9hc8r0hwq73krbhakjan8fgbfr6w8z2crfkv3zmz"; depends=[graph]; }; + RBM = derive2 { name="RBM"; version="1.4.0"; sha256="0a17l6wmlqimb3jlh5i4qjyyhkymv4mcdhjbkis2qrf4zx6yn428"; depends=[limma marray]; }; + RBioinf = derive2 { name="RBioinf"; version="1.32.0"; sha256="0yvbvhcydsqx2c4vmdbgcsccn71yswci82xb2qcjbps4z1q31g4x"; depends=[graph]; }; + RCASPAR = derive2 { name="RCASPAR"; version="1.18.0"; sha256="15har8sa0drdjn033fia2gny1iacb5q06h2hr36k6hqr42y33p07"; depends=[]; }; + RCy3 = derive2 { name="RCy3"; version="1.2.0"; sha256="020j4ay8r4rsbwpc9bjgw96hwp4m4q4rg078grg9scqfz9jjpksw"; depends=[graph httr RCurl RJSONIO]; }; + RCyjs = derive2 { name="RCyjs"; version="1.4.0"; sha256="10d55bjav4fshn92fiif63fb17b58wsbg39fxslcyg5hl2wa8vhl"; depends=[BiocGenerics BrowserViz graph httpuv igraph jsonlite Rcpp]; }; + RCytoscape = derive2 { name="RCytoscape"; version="1.21.1"; sha256="0jr3wlqk8aghaxdpq9a9z7gp7hmdfgmzkflv561p9g6yawv3v1q2"; depends=[BiocGenerics graph]; }; + RDAVIDWebService = derive2 { name="RDAVIDWebService"; version="1.10.0"; sha256="1ly2xfmq3vwp2zxjqlmsjfy415h3zf6hhb71blf56g0naws7j5xh"; depends=[Category ggplot2 GO_db GOstats graph RBGL rJava]; }; + RDRToolbox = derive2 { name="RDRToolbox"; version="1.22.0"; sha256="1p2c7l16q9lyiki1a6vq076r9crjqpr6pgjckhpcis9p9gh5gapy"; depends=[MASS rgl]; }; + REDseq = derive2 { name="REDseq"; version="1.18.0"; sha256="14f2vh1s16dmar21h673qx8ypq5rbajazvmw6iw0bvxzbk6fy7f6"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome BSgenome_Celegans_UCSC_ce2 ChIPpeakAnno IRanges multtest]; }; + RGSEA = derive2 { name="RGSEA"; version="1.6.2"; sha256="1y5qfcspj0l1ckfqlyy0dhl3aaach2mhk8bkqyx4qr68rh496y3s"; depends=[BiocGenerics]; }; + RGalaxy = derive2 { name="RGalaxy"; version="1.16.2"; sha256="03ippdid60iql6dlc5c7f2njfjfs7ssgfs8gl1p8kmrg4c4hd3p0"; depends=[Biobase BiocGenerics digest optparse roxygen2 XML]; }; + RGraph2js = derive2 { name="RGraph2js"; version="1.0.0"; sha256="0mhj021nczpf6ji5297zx0k7kc7503i2w5z9js5irlj5d6552700"; depends=[digest graph rjson whisker]; }; + RIPSeeker = derive2 { name="RIPSeeker"; version="1.12.0"; sha256="1dymn67l2d6165misxh4p6j8cwlydkh75j77pxx5wdnr2x2nfkcb"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; + RImmPort = derive2 { name="RImmPort"; version="1.0.2"; sha256="0278fgq6b9jl5qy2nf6r1qijcrwkzyi6wpx1hq0021k3m1q2sl0b"; depends=[data_table DBI dplyr plyr reshape2 RSQLite sqldf]; }; + RLMM = derive2 { name="RLMM"; version="1.34.0"; sha256="0inyvbr5khwf24j7wdnn6x0b8zqcqf11jm5jqn6lgyxwljl5j0lq"; depends=[MASS]; }; + RMassBank = derive2 { name="RMassBank"; version="2.0.0"; sha256="0b0aghrr1s9izk7bsxj6qr2gdavxpyjk5ks7zbnqdjwc95hprndv"; depends=[Biobase digest MSnbase mzR rcdk Rcpp RCurl rjson S4Vectors XML yaml]; }; + RNASeqPower = derive2 { name="RNASeqPower"; version="1.12.0"; sha256="0y5cgdcj4wn3j9pxyv0hsjpbsc7ahl2a19mj6agjf8l4hn3wg3ky"; depends=[]; }; + RNAinteract = derive2 { name="RNAinteract"; version="1.20.0"; sha256="0a33sr1iqsym990d76rhrxpmcf0g0zzg7waidc5i608496kx3012"; depends=[abind Biobase cellHTS2 geneplotter gplots hwriter ICS ICSNP lattice latticeExtra limma locfit RColorBrewer splots]; }; + RNAither = derive2 { name="RNAither"; version="2.20.0"; sha256="0a4h1wmr158wmm477pbn2jkn5hcfj0w5dxi071shbv26b88lvfgg"; depends=[biomaRt car geneplotter limma prada RankProd splots topGO]; }; + RNAprobR = derive2 { name="RNAprobR"; version="1.4.0"; sha256="08cp1ycx6h9h7df58v84x5l7a3b2as27hap4jd37frvhy8bwkkay"; depends=[BiocGenerics Biostrings GenomicAlignments GenomicFeatures GenomicRanges plyr Rsamtools rtracklayer]; }; + ROC = derive2 { name="ROC"; version="1.48.0"; sha256="01n66xmy2wsh2m7vxvlnvh5n40cfnqngsgzywnx5ywbq3g570328"; depends=[]; }; + ROTS = derive2 { name="ROTS"; version="1.0.0"; sha256="1s48zavs9w3swn3q0hjq6rnld28hd8jsbqq1jr38dd4rmh1mxgxr"; depends=[Biobase Rcpp]; }; + ROntoTools = derive2 { name="ROntoTools"; version="2.0.0"; sha256="0rmi1f8nr1ks5mwqmriqyh025qzs7j8a5fmfk7y3kb9wm5is7dm7"; depends=[boot graph KEGGgraph KEGGREST Rgraphviz]; }; + RPA = derive2 { name="RPA"; version="1.28.0"; sha256="08cj1li41vgxg61bgbv5gw6fnqsc1hgsm6xl3yldpy33rl3q0sg2"; depends=[affy BiocGenerics phyloseq]; }; + RRHO = derive2 { name="RRHO"; version="1.12.0"; sha256="0vv4lxavgm1jfj2lvm7j589cbnd23mp77jfwacaswgz8q3s7l936"; depends=[VennDiagram]; }; + RSVSim = derive2 { name="RSVSim"; version="1.12.0"; sha256="1pbsp2an6y4mgcwcsc25v6v68yn8fxpkn4anmx6rmhpdl2dvwpzc"; depends=[Biostrings GenomicRanges IRanges ShortRead]; }; + RTCA = derive2 { name="RTCA"; version="1.24.0"; sha256="0q7cfkhayir6a437q7glyk536jhlq61kpapsrh6kvl0m5jcknai8"; depends=[Biobase gtools RColorBrewer]; }; + RTCGA = derive2 { name="RTCGA"; version="1.2.5"; sha256="112xmvk4cx6y4ma9kmrl6yryadml3mwd1i2924gbj1xy3wk0p0f2"; depends=[assertthat data_table dplyr ggplot2 ggthemes knitr purrr rvest scales stringi survival survminer viridis XML xml2]; }; + RTCGAToolbox = derive2 { name="RTCGAToolbox"; version="2.2.2"; sha256="0gfhvzswjdlxpy6i7bhni39a5qvqdkdqiwrm411g2mx38zicgnxm"; depends=[data_table limma RCircos RCurl RJSONIO survival XML]; }; + RTN = derive2 { name="RTN"; version="1.10.0"; sha256="14dixlh8fr7kjzf6jrgcr7qhqpdbwl5r76c78mzqig5lzba3s0gy"; depends=[car data_table ff igraph IRanges limma minet RedeR snow]; }; + RTopper = derive2 { name="RTopper"; version="1.18.0"; sha256="0bmgyn74h0i2jbqw470l3ffv6lv7iwqilgb2zx6zh1f0gsy11km9"; depends=[Biobase limma multtest]; }; + RUVSeq = derive2 { name="RUVSeq"; version="1.6.2"; sha256="0kwgf512gld4vdmygwps0zqlas936fg05b573xvhag88rcdx8b5b"; depends=[Biobase EDASeq edgeR MASS]; }; + RUVcorr = derive2 { name="RUVcorr"; version="1.4.2"; sha256="0japqgx5jvava36hsc3jjx5x762ayhsklnn7m242wb77k97qwi4p"; depends=[BiocParallel bladderbatch corrplot gridExtra lattice MASS psych reshape2 snowfall]; }; + RUVnormalize = derive2 { name="RUVnormalize"; version="1.6.0"; sha256="0pnx0zxacwi5qbm4cy83da60r306phzc9j8sib2n166g9wpqiypw"; depends=[Biobase RUVnormalizeData]; }; + RWebServices = derive2 { name="RWebServices"; version="1.36.0"; sha256="03x97qwv3nryazz4d3g70lfs6la2v79favlgskbr3x3ajjc2n0cg"; depends=[RCurl SJava TypeInfo]; }; + RamiGO = derive2 { name="RamiGO"; version="1.18.0"; sha256="0rq2xvb4gpcj5daczrj2if7v3kzs00kkvsa7kb78v37vvhif4rh8"; depends=[graph gsubfn igraph png RCurl RCytoscape]; }; + RankProd = derive2 { name="RankProd"; version="2.44.0"; sha256="1vyghlm4a1wvq6mcw7ls0jnwf0q64730zvvycjb34x38v18wml3y"; depends=[]; }; + RareVariantVis = derive2 { name="RareVariantVis"; version="1.6.2"; sha256="1ia1gdaw8n3v091yp1hsgy6i2dcshcm179vnm3q40ip05mm9yshz"; depends=[BiocGenerics GenomeInfoDb GenomicRanges googleVis IRanges S4Vectors VariantAnnotation]; }; + Rariant = derive2 { name="Rariant"; version="1.8.3"; sha256="0cnqrl8n9piyzbrxpk22nqkkmrnnz7vrhpbg20i6sfyp34353gzj"; depends=[dplyr exomeCopy GenomeInfoDb GenomicRanges ggbio ggplot2 IRanges reshape2 Rsamtools S4Vectors shiny SomaticSignatures VariantAnnotation VGAM]; }; + RbcBook1 = derive2 { name="RbcBook1"; version="1.40.0"; sha256="19cwhsshw9fgq933cgrr9j31n9nf85jjix7ykdcs43rbfryzy99s"; depends=[Biobase graph rpart]; }; + Rbowtie = derive2 { name="Rbowtie"; version="1.12.0"; sha256="1gpjc4h11g4c0v2g6fpf1kjyws93i7w1slh12gwpn4hfbha1vsp2"; depends=[]; }; + Rcade = derive2 { name="Rcade"; version="1.14.0"; sha256="0z2rd8g9dbw2q48jmw0d25qrq4x47n708kryp5r7ssb78jmvk7nc"; depends=[baySeq GenomicRanges plotrix rgl Rsamtools S4Vectors]; }; + Rchemcpp = derive2 { name="Rchemcpp"; version="2.10.0"; sha256="1i4fm7ybclj5c87azqv2kjijq28wklrhs3vclyjfk5wapf6kfj5d"; depends=[ChemmineR Rcpp]; }; + RchyOptimyx = derive2 { name="RchyOptimyx"; version="2.12.0"; sha256="1vkfsjl0krp69vhg5riq0bnlmij1qg8xbip5sd2m48z13qwysv6b"; depends=[flowType graph Rgraphviz sfsmisc]; }; + Rcpi = derive2 { name="Rcpi"; version="1.8.0"; sha256="0zx2x5zzx8n4ixyqk5h9sbd48nx3y68cknjpmby8j06csdzjdcc1"; depends=[Biostrings ChemmineR doParallel fmcsR foreach GOSemSim rcdk RCurl rjson]; }; + Rdisop = derive2 { name="Rdisop"; version="1.32.0"; sha256="1x8sdgksx4wh3kdapfmlgq312ip3a8lwi4diafgjkzjyb3rpqwgd"; depends=[Rcpp RcppClassic]; }; + ReQON = derive2 { name="ReQON"; version="1.18.0"; sha256="0kx7mz8m4siygdg1saq1xk9n4qxpz6ymsm6hf3d566sn3ldb97dr"; depends=[rJava Rsamtools seqbias]; }; + ReactomePA = derive2 { name="ReactomePA"; version="1.16.2"; sha256="1rd58nfkbjkryg5z2if9g2lck3da65bbr4pkph3wnlhxdn1i5q9l"; depends=[AnnotationDbi DOSE GOSemSim graphite igraph reactome_db]; }; + ReadqPCR = derive2 { name="ReadqPCR"; version="1.18.0"; sha256="11hzn2lvgjys8jj5y6999s90jngmj8gnnq7cywql0l6dg7y4mjgq"; depends=[affy Biobase]; }; + RedeR = derive2 { name="RedeR"; version="1.20.0"; sha256="1gy2i8kkakv89d335cj0agdbdbrrcaaz5ykpgh46aphag2z2z3fw"; depends=[igraph pvclust RCurl XML]; }; + RefNet = derive2 { name="RefNet"; version="1.8.0"; sha256="0wc93cq5g9x7ah925k7jcz4cnlpccfkrzq4l3ahzxc338xyrsj5j"; depends=[AnnotationHub BiocGenerics IRanges PSICQUIC RCurl shiny]; }; + RefPlus = derive2 { name="RefPlus"; version="1.42.0"; sha256="18pnia63wxqanc8v2ljlhvxiff0l9dshfm68rq5kwlhzmihxdz9q"; depends=[affy affyPLM Biobase preprocessCore]; }; + Repitools = derive2 { name="Repitools"; version="1.18.3"; sha256="0h1sm6jq0kn1ahkj9k8xlj9smb8j63d482wvknmx8j3xn3qmjg1r"; depends=[aroma_affymetrix BiocGenerics Biostrings BSgenome cluster DNAcopy edgeR GenomeInfoDb GenomicAlignments GenomicRanges gplots gsmoothr IRanges MASS Ringo Rsamtools Rsolnp rtracklayer S4Vectors]; }; + ReportingTools = derive2 { name="ReportingTools"; version="2.12.2"; sha256="04acgb7gqf6p0dgimi5sm54kwppclamayfk8m7373bjnzd25m88w"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category DESeq2 edgeR ggbio ggplot2 GOstats GSEABase hwriter IRanges knitr lattice limma PFAM_db R_utils XML]; }; + Rgraphviz = derive2 { name="Rgraphviz"; version="2.16.0"; sha256="0zspfl87qz60hlnc6hcbd2sjjc9fgcq72zd75wnmf20h7ry1ngd7"; depends=[graph]; }; + Rhtslib = derive2 { name="Rhtslib"; version="1.4.3"; sha256="1wgpn9x8abjj7fc087pdavqc3fz0pl5xdh231mgjila18irwlhb3"; depends=[zlibbioc]; }; + RiboProfiling = derive2 { name="RiboProfiling"; version="1.2.1"; sha256="18s35h70isvy6q4psa5j04x7w0srvd3rlslzvkmb0qs2m2x786mz"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr reshape2 Rsamtools rtracklayer S4Vectors sqldf]; }; + Ringo = derive2 { name="Ringo"; version="1.36.0"; sha256="18rbl1mvhmh31wvlvh1mjcmy4r7688alzzg0hjswvs8dmb66pr86"; depends=[Biobase BiocGenerics genefilter lattice limma Matrix RColorBrewer vsn]; }; + Risa = derive2 { name="Risa"; version="1.14.0"; sha256="0lss7cx84f2sm4r6g1r3m8qpv0ml5y0mkgdbigx49676d8hir9d8"; depends=[affy Biobase biocViews Rcpp xcms]; }; + Rmagpie = derive2 { name="Rmagpie"; version="1.28.0"; sha256="19hvhrbzca631n4jz88k52zlaxj21lpcfcz6gdwqiibpa8p0hqhd"; depends=[Biobase e1071 kernlab pamr]; }; + RmiR = derive2 { name="RmiR"; version="1.28.0"; sha256="10bbwcwssidad2lvk25nm9n40dgmklj7k5m7fps61ny1my4bmbhs"; depends=[DBI RmiR_Hs_miRNA RSVGTipsDevice]; }; + RnBeads = derive2 { name="RnBeads"; version="1.4.0"; sha256="0jmlcjxiri356ykg6dm0cxbmh85kljq8m3cndrfqc1wdj3jg3my3"; depends=[BiocGenerics cluster ff fields GenomicRanges ggplot2 gplots gridExtra illuminaio IRanges limma MASS matrixStats methylumi plyr RColorBrewer S4Vectors]; }; + RnaSeqSampleSize = derive2 { name="RnaSeqSampleSize"; version="1.4.2"; sha256="1jrf22a8f5g8scpaqwyp62hlpkfa9cm9y8ifqzz6fkr319i892yy"; depends=[biomaRt edgeR heatmap3 KEGGREST matlab Rcpp RnaSeqSampleSizeData]; }; + Rnits = derive2 { name="Rnits"; version="1.6.2"; sha256="1h1g3wqrcsgmixs8bqbray6p0zknfh2gr47dxlwcmlb6gacwzkra"; depends=[affy Biobase boot ggplot2 impute limma qvalue reshape2]; }; + Roleswitch = derive2 { name="Roleswitch"; version="1.10.0"; sha256="1vfywgjnk0dgr47brpalcg8dwgway5lkc4b320mxrpjvkfa9nh60"; depends=[Biobase biomaRt Biostrings DBI microRNA plotrix pracma reshape]; }; + Rolexa = derive2 { name="Rolexa"; version="1.27.0"; sha256="002bsgk5b7zkxzf26wj53k5qjfjqn55fy3qfaql6xa78yb8kzfad"; depends=[Biostrings IRanges mclust ShortRead]; }; + RpsiXML = derive2 { name="RpsiXML"; version="2.14.0"; sha256="018l540g50nsnqwazpkla2sqf2zvsnlp4ps6j7rly2cl3qay2kzn"; depends=[annotate AnnotationDbi Biobase graph hypergraph RBGL XML]; }; + Rqc = derive2 { name="Rqc"; version="1.6.2"; sha256="0jm2ib52fjy13lh31xm8fn0z2rkx8sld7zykhjj2ci8514hqcczm"; depends=[BiocGenerics BiocParallel BiocStyle Biostrings biovizBase digest GenomicAlignments GenomicFiles ggplot2 IRanges knitr markdown plyr Rcpp reshape2 Rsamtools S4Vectors shiny ShortRead]; }; + Rsamtools = derive2 { name="Rsamtools"; version="1.24.0"; sha256="0w0drs8cpk8nlazq64ag7nm1w5jd1m8riialivm01hz5zcra7scb"; depends=[BiocGenerics BiocParallel Biostrings bitops GenomeInfoDb GenomicRanges IRanges S4Vectors XVector zlibbioc]; }; + Rsubread = derive2 { name="Rsubread"; version="1.22.3"; sha256="0p7d542gbk5d9pqlyhvqmapfqbay2cgdrs83dvyq0fbg98nzf32l"; depends=[]; }; + Rtreemix = derive2 { name="Rtreemix"; version="1.34.0"; sha256="0xxkii2fmkphxj478ykdym1z09asz28cyzg8r7h6f4adns2rby7h"; depends=[Biobase graph Hmisc]; }; + S4Vectors = derive2 { name="S4Vectors"; version="0.10.3"; sha256="09lrvy3d5q58hsgw9as4hyyx07k1vyy2zjn3xsvhyfd97yk6w6lv"; depends=[BiocGenerics]; }; + SAGx = derive2 { name="SAGx"; version="1.46.0"; sha256="1rp190n21p5cav07rkm400al354b4wwqicz3nk095jdrjw6d5pcx"; depends=[Biobase multtest]; }; + SANTA = derive2 { name="SANTA"; version="2.10.2"; sha256="19v4kvfsj6zqv18q1hhl1r0ngkxd3b18h19mbpd4p0chzrfzj36d"; depends=[igraph Matrix snow]; }; + SBMLR = derive2 { name="SBMLR"; version="1.68.0"; sha256="0xamsiq5dqmb2l52ckzbra5q072s5y1xbg6983fp9626mns350ry"; depends=[deSolve XML]; }; + SC3 = derive2 { name="SC3"; version="1.1.4"; sha256="1laxigz5141s877f22dkw4r0icq282s2s4wxlaapdnyg062m2qic"; depends=[cluster colorspace doParallel doRNG e1071 foreach ggplot2 pheatmap RColorBrewer robustbase ROCR rrcov RSelenium Rtsne shiny WriteXLS]; }; + SCAN_UPC = derive2 { name="SCAN.UPC"; version="2.14.0"; sha256="038d5rd649xyfl66h0gmfgp9ldmikl39qivmz0knl4g20b8p5ma0"; depends=[affy affyio Biobase Biostrings foreach GEOquery IRanges MASS oligo sva]; }; + SELEX = derive2 { name="SELEX"; version="1.4.0"; sha256="1gxdcql81l8anjdrpi4mc8aw36srry076yhi7vwlia3s9rg3371i"; depends=[Biostrings rJava]; }; + SEPA = derive2 { name="SEPA"; version="1.2.2"; sha256="0nmi87s9288p5mrqajpkqq80y17lh71dhr996snp9przq00g2ga4"; depends=[ggplot2 org_Hs_eg_db org_Mm_eg_db reshape2 segmented shiny topGO]; }; + SGSeq = derive2 { name="SGSeq"; version="1.6.12"; sha256="1swb3yac81s97m2bp15j02x0s364rf1szbhfmfpnmxmqmm9jdpsb"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges igraph IRanges Rsamtools rtracklayer RUnit S4Vectors SummarizedExperiment]; }; + SICtools = derive2 { name="SICtools"; version="1.2.2"; sha256="12jpr2w61pyx61rliz0snsa1ynyxl0kszvjqvk12rkihwgfrmld9"; depends=[Biostrings doParallel GenomicRanges IRanges matrixStats plyr Rsamtools stringr]; }; + SIM = derive2 { name="SIM"; version="1.42.0"; sha256="0sqm6rgfillq0fbiisy0g3cy0xyaaa7l93vw0gcjcyysyy0gls7c"; depends=[globaltest quantreg quantsmooth]; }; + SIMAT = derive2 { name="SIMAT"; version="1.4.0"; sha256="1z53q0f862irgdplszcpljkf27lsgw20055w0g80knygf6kkzyvq"; depends=[ggplot2 mzR Rcpp reshape2]; }; + SISPA = derive2 { name="SISPA"; version="1.2.1"; sha256="17qvzlmbb4mpijfglfgnmk6xvirdc3xfi2fc8wwgcv4f3vw2sqmw"; depends=[changepoint data_table ggplot2 GSVA plyr]; }; + SJava = derive2 { name="SJava"; version="0.98.0"; sha256="05y04474frdm78lpwvbqsqbg9d1nw746j0ndllh2489p6qk0w2ky"; depends=[]; }; + SLGI = derive2 { name="SLGI"; version="1.32.0"; sha256="1ki1vyaabzlcjkmmdf1rj73wadnahdgvnyz5zkasfszxfifxa5x5"; depends=[AnnotationDbi Biobase BiocGenerics GO_db lattice ScISI]; }; + SLqPCR = derive2 { name="SLqPCR"; version="1.38.0"; sha256="0jzfcbhm45sgppxm21y969l2wwvvi3i0k73pgi91djxww9iax302"; depends=[]; }; + SMAP = derive2 { name="SMAP"; version="1.36.0"; sha256="0w43xrmcy6rk0rfrd5jx3s646bk2nwjcignd8gh4wg9x2wp03f9n"; depends=[]; }; + SMITE = derive2 { name="SMITE"; version="1.0.2"; sha256="1y6i5bifxfabhpp60np60rxqj5flxwrc3dxz5nclgm4c3kr95gk1"; depends=[AnnotationDbi Biobase BioNet geneLenDataBase GenomicRanges ggplot2 goseq Hmisc igraph IRanges KEGG_db org_Hs_eg_db plyr reactome_db S4Vectors scales]; }; + SNAGEE = derive2 { name="SNAGEE"; version="1.12.0"; sha256="00vxji06x84fh3sfgpdfk67ll1mxvbh58p16dyhd5xjw2rb37s6q"; depends=[SNAGEEdata]; }; + SNPRelate = derive2 { name="SNPRelate"; version="1.6.6"; sha256="0cjgzww9pj4ivg8rdiaz1v1kv83ghsypjm57pqbx093b1xdjgkq8"; depends=[gdsfmt]; }; + SNPchip = derive2 { name="SNPchip"; version="2.18.0"; sha256="0ajzpwspbw9jn6lpf5z0rgg1gxfr8d4qw8pwxd64784lwfcvn063"; depends=[Biobase foreach GenomeInfoDb GenomicRanges IRanges lattice oligoClasses S4Vectors SummarizedExperiment]; }; + SNPhood = derive2 { name="SNPhood"; version="1.2.3"; sha256="00kr6ri7vv7m0qz5wzx7bd6hj92mp2pbprbyc79ggan5dzpfaxsc"; depends=[BiocGenerics BiocParallel Biostrings checkmate cluster data_table DESeq2 GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges lattice RColorBrewer reshape2 Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; }; + SPEM = derive2 { name="SPEM"; version="1.12.0"; sha256="0m3cd58nm3jmdzsph3yq8ndp8civmckhf553yl1q8y4v99y9dpa4"; depends=[Biobase Rsolnp]; }; + SPIA = derive2 { name="SPIA"; version="2.24.0"; sha256="1mp626ygyyyi2faad0qg5bi86rg21sq2bs0jxs95fwcwyziwj8np"; depends=[KEGGgraph]; }; + SQUADD = derive2 { name="SQUADD"; version="1.22.0"; sha256="098621vqfykkry6hf06yg4fg4ickrcb8wscv89s763kjc1nlkly8"; depends=[RColorBrewer]; }; + SRAdb = derive2 { name="SRAdb"; version="1.30.0"; sha256="0adrrs5bcpxqsji41wah2pww591wv8g1abrkim08cry5wpprznj9"; depends=[GEOquery graph RCurl RSQLite]; }; + SSPA = derive2 { name="SSPA"; version="2.12.0"; sha256="0v9xi3s7ayab6qcark77kblnyzh2jp0vschh4ylpfgjqljy0cing"; depends=[lattice limma qvalue]; }; + STAN = derive2 { name="STAN"; version="2.0.3"; sha256="0fkiskqylpdwgwr9nanf4xajdq9v09f6dqja69d4rw2bksb1xxqs"; depends=[BiocGenerics GenomeInfoDb GenomicRanges Gviz IRanges poilog Rsolnp S4Vectors]; }; + STATegRa = derive2 { name="STATegRa"; version="1.6.2"; sha256="1np76zcxqh3yqjbxqvlzfasf95bjp3sa5f7nwyzz3xffykb4fzbp"; depends=[affy Biobase calibrate edgeR foreach ggplot2 gplots gridExtra limma MASS]; }; + STRINGdb = derive2 { name="STRINGdb"; version="1.12.0"; sha256="0vww6nqv00n1230xqf48j99252dmpwa9sd9pgsjlvcgzbwgnccnk"; depends=[gplots hash igraph plotrix plyr png RColorBrewer RCurl sqldf]; }; + SVM2CRM = derive2 { name="SVM2CRM"; version="1.4.0"; sha256="10418yvdyw9n74qjhlm9zcdnw2qpyxc75j5i3ayqdnym2xq5qfvm"; depends=[AnnotationDbi GenomicRanges IRanges LiblineaR mclust pls ROCR rtracklayer squash SVM2CRMdata verification zoo]; }; + SWATH2stats = derive2 { name="SWATH2stats"; version="1.2.3"; sha256="06pajvvis9wi9pn9rfgsdwhpvdyp6zf2iv0kd3rjkvr9ypl9m0z4"; depends=[data_table ggplot2 reshape2]; }; + SamSPECTRAL = derive2 { name="SamSPECTRAL"; version="1.26.0"; sha256="1m47ysqnihm0kggqwzczvl8c2njcv7whbl1pz7q75bn02wn2nx09"; depends=[]; }; + ScISI = derive2 { name="ScISI"; version="1.44.0"; sha256="0yqq5jnyksnlwpxq9n5ajg7h0fzvm4pphsc6xks0fx7zkb7j65b2"; depends=[annotate AnnotationDbi apComplex GO_db org_Sc_sgd_db RpsiXML]; }; + SemDist = derive2 { name="SemDist"; version="1.6.0"; sha256="1na6imf2n5q3sjfrjnhyf8jwygn4h5mafsnmlqpjjsamn7jnnp2d"; depends=[annotate AnnotationDbi GO_db]; }; + SeqArray = derive2 { name="SeqArray"; version="1.12.9"; sha256="083wkjbmph9lw9psfb8gvmkpwwgrs6p8l6wldcffq1bp46kzmlpk"; depends=[Biostrings gdsfmt GenomeInfoDb GenomicRanges IRanges S4Vectors SummarizedExperiment VariantAnnotation]; }; + SeqGSEA = derive2 { name="SeqGSEA"; version="1.12.0"; sha256="06srbq183hdgvjg7dlx9iycb557j9pv9ip9ffm66kigwyyyg7ys0"; depends=[Biobase biomaRt DESeq doParallel]; }; + SeqVarTools = derive2 { name="SeqVarTools"; version="1.10.1"; sha256="1jali8s39gc9v9r69gknwsgkjxjp4sqyv45gkri289qx1cv4ck69"; depends=[Biobase gdsfmt GenomicRanges GWASExactHW IRanges logistf S4Vectors SeqArray stringr VariantAnnotation]; }; + ShortRead = derive2 { name="ShortRead"; version="1.30.0"; sha256="0qlxns4bhwfpafx3km2lnivgl2qyp7n4g1ardm6vrinpq8paxbjg"; depends=[Biobase BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges hwriter IRanges lattice latticeExtra Rsamtools S4Vectors XVector zlibbioc]; }; + SigCheck = derive2 { name="SigCheck"; version="2.4.0"; sha256="0c2wlp96dvwjxaa533lf0dqn42nbiilca0klzw8ca0b8qq81506c"; depends=[Biobase BiocParallel e1071 MLInterfaces survival]; }; + SigFuge = derive2 { name="SigFuge"; version="1.10.0"; sha256="142aas9vcsf9n69c22rfmz1aidr6r9bi6q2vzl5dcj9yyfgm44h7"; depends=[GenomicRanges ggplot2 matlab reshape sigclust]; }; + SimBindProfiles = derive2 { name="SimBindProfiles"; version="1.10.0"; sha256="11k8vwwjiz5q586cqcc4z2yr9h6kj78n3k4kwc33cb5yxvv5yf4p"; depends=[Biobase limma mclust Ringo]; }; + SomatiCA = derive2 { name="SomatiCA"; version="2.2.1"; sha256="17kmqrqjis7zg4wn2h1jmq27q57l3p8fb8sy9x3wm5wh2kh476nn"; depends=[DNAcopy doParallel foreach GenomicRanges IRanges lars rebmix sn]; }; + SomaticSignatures = derive2 { name="SomaticSignatures"; version="2.8.4"; sha256="1mkwsvn5z78sba9sx0hxrfnpkqz5xjs0zhc2a93ljx1fxzsxx8kh"; depends=[Biobase Biostrings GenomeInfoDb GenomicRanges ggbio ggplot2 IRanges NMF pcaMethods proxy reshape2 S4Vectors VariantAnnotation]; }; + SpacePAC = derive2 { name="SpacePAC"; version="1.10.0"; sha256="11vn9l50ndkxb0yi4nx1g23hzmcwlgiqjrv74vyncpkc8dw6kx76"; depends=[iPAC]; }; + SpeCond = derive2 { name="SpeCond"; version="1.26.0"; sha256="0f2m2cyqnr495hlv167hpki2syn8pq3aicsnn52qycyx7ym4rywa"; depends=[Biobase fields hwriter mclust RColorBrewer]; }; + SpidermiR = derive2 { name="SpidermiR"; version="1.2.5"; sha256="0q3l0fw9yx47d02w4ivaafrb4rclnd85fmyf46lxhjaskmsb10gl"; depends=[AnnotationDbi ggplot2 gplots gridExtra httr igraph lattice latticeExtra miRNAtap miRNAtap_db networkD3 org_Hs_eg_db TCGAbiolinks visNetwork]; }; + SplicingGraphs = derive2 { name="SplicingGraphs"; version="1.12.0"; sha256="1jqngzakzc28vclxd14cbgfihvh161qh665ps5zmc00sjiapfh14"; depends=[BiocGenerics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph igraph IRanges Rgraphviz Rsamtools S4Vectors]; }; + Starr = derive2 { name="Starr"; version="1.28.0"; sha256="15h869kg4ba6qcx0gvjfp3k4dkdxxl9pbr1cpmyjha05zvbk3zss"; depends=[affxparser affy MASS pspline Ringo zlibbioc]; }; + Streamer = derive2 { name="Streamer"; version="1.18.0"; sha256="03p4dpi5lfl3q4wfh2q26vmshawxzpj5linh1933724lip4bn20l"; depends=[BiocGenerics graph RBGL]; }; + SummarizedExperiment = derive2 { name="SummarizedExperiment"; version="1.2.3"; sha256="0c43fsrha886sd0diislnlf8r5h5x7fbhphkzcm0rw3k2jz8wlyk"; depends=[Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; + Sushi = derive2 { name="Sushi"; version="1.10.0"; sha256="0y9gz80xf5y2pilcg7c3gffsdspgr2hr51jbk4xhazijzimwf70k"; depends=[biomaRt zoo]; }; + SwathXtend = derive2 { name="SwathXtend"; version="1.0.0"; sha256="1j0dzmx8d247s206cfzf80p6gjgh44qfccvbn0xmjrpswbwsj3sy"; depends=[e1071 lattice openxlsx VennDiagram]; }; + SwimR = derive2 { name="SwimR"; version="1.10.0"; sha256="0prwypkjq3kry70akfah50bfh6rdhfwgcc5a7wp7vd7nz2sn78cs"; depends=[gplots heatmap_plus R2HTML signal]; }; + TCC = derive2 { name="TCC"; version="1.12.1"; sha256="1zk7njhdv50lryrdnlnvrbkzpjz4zizwzv0v7hdxg45jak1q7zvd"; depends=[baySeq DESeq DESeq2 edgeR ROC samr]; }; + TCGAbiolinks = derive2 { name="TCGAbiolinks"; version="2.0.13"; sha256="0hs370sjkx5x8fgz902a91q1r5p9am6s0a2sscsw1x391xz659ad"; depends=[affy Biobase BiocGenerics biomaRt circlize coin ComplexHeatmap ConsensusClusterPlus data_table dnet doParallel downloader dplyr EDASeq edgeR genefilter GenomicFeatures GenomicRanges GGally ggplot2 ggrepel ggthemes gplots httr igraph IRanges jsonlite knitr limma matlab parmigene plyr R_utils RColorBrewer readr reshape2 rvest S4Vectors scales stringr SummarizedExperiment supraHex survival TxDb_Hsapiens_UCSC_hg19_knownGene XML xml2 xtable]; }; + TDARACNE = derive2 { name="TDARACNE"; version="1.22.0"; sha256="11hy6j6yv008bfkggjyb08k9dzk2xy5sdklga62v8lczpwd161wn"; depends=[Biobase GenKern Rgraphviz]; }; + TEQC = derive2 { name="TEQC"; version="3.12.0"; sha256="0ayw4ir8rpq1lk2ml7djp8x67fhn43x852p3myjnb0d8war46whm"; depends=[Biobase BiocGenerics hwriter IRanges Rsamtools]; }; + TFBSTools = derive2 { name="TFBSTools"; version="1.10.4"; sha256="1hgaqng02y0kgmjnxv8z93698hslr7cqbmgdf8rpaxg6zbn9cb0h"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome caTools CNEr DirichletMultinomial GenomeInfoDb GenomicRanges gtools IRanges RSQLite rtracklayer S4Vectors seqLogo TFMPvalue XML XVector]; }; + TIN = derive2 { name="TIN"; version="1.4.1"; sha256="1mgbbk2jifb04c07bwhj9azhgsnza05qf28l2jpi9d10qnfn0nxq"; depends=[aroma_affymetrix data_table impute squash stringr WGCNA]; }; + TPP = derive2 { name="TPP"; version="2.2.6"; sha256="1xzvd2pf6j7d9wwjsfvxzl4xib0h2nxkp4zzb3g60p6mfydr78gd"; depends=[Biobase doParallel foreach ggplot2 gridExtra nls2 openxlsx plyr RColorBrewer RCurl reshape2 VennDiagram VGAM]; }; + TRONCO = derive2 { name="TRONCO"; version="2.4.3"; sha256="0j32db8d067nd7fiiny4whv1hm4w8fv1ivq91ri728n21f92qw52"; depends=[bnlearn cgdsr circlize doParallel foreach gRapHD gridExtra gtable gtools igraph iterators R_matlab RColorBrewer Rgraphviz scales xtable]; }; + TSCAN = derive2 { name="TSCAN"; version="1.10.2"; sha256="15mi3qg8qrwa44h52cbrmalyi13bbllzcjc4dglpp9mnybwrs126"; depends=[combinat fastICA ggplot2 gplots igraph mclust mgcv plyr shiny]; }; + TSSi = derive2 { name="TSSi"; version="1.18.0"; sha256="0y2grk912mv2jfadypfrxr5k2kkwl6s2dcnn7g3svj65038b92jw"; depends=[Biobase BiocGenerics Hmisc IRanges minqa plyr S4Vectors]; }; + TarSeqQC = derive2 { name="TarSeqQC"; version="1.2.0"; sha256="1a2gg203j9djf01w5xk04h79mn7wgd1yibgrvp1qaj3hvl0i0n54"; depends=[BiocGenerics BiocParallel Biostrings cowplot GenomeInfoDb GenomicRanges ggplot2 IRanges openxlsx plyr reshape2 Rsamtools S4Vectors]; }; + TargetScore = derive2 { name="TargetScore"; version="1.10.0"; sha256="1rj56jjhp4cz6jp5xrbmj9s3jszq5dmczf5szbzc34fg70y4fbqs"; depends=[Matrix pracma]; }; + TargetSearch = derive2 { name="TargetSearch"; version="1.28.1"; sha256="0wl9qx6q1czz2nhzz7di928ldv2x0bwj5si6kfm9rpw9q5v6wcs2"; depends=[ncdf4]; }; + TitanCNA = derive2 { name="TitanCNA"; version="1.10.0"; sha256="085z6j0a0rk86lm8c1asks2rvl7f0w1ncvsly2p8s9jfbk8yahwc"; depends=[foreach GenomeInfoDb GenomicRanges IRanges Rsamtools]; }; + ToPASeq = derive2 { name="ToPASeq"; version="1.6.0"; sha256="1q9ys84ccv79jm475vm40ncm15dchlw8ak3xarsw9vkdrr4dv5wl"; depends=[AnnotationDbi Biobase clipper DESeq DESeq2 doParallel edgeR fields graph graphite gRbase KEGGgraph limma locfit qpgraph R_utils RBGL Rcpp Rgraphviz SummarizedExperiment TeachingDemos]; }; + TransView = derive2 { name="TransView"; version="1.16.0"; sha256="1s4i694g2qlf9hsci6flm6z7vxic0n63rc1fi4dh8ag9ds2b9wzj"; depends=[BiocGenerics GenomicRanges gplots IRanges Rsamtools S4Vectors zlibbioc]; }; + TurboNorm = derive2 { name="TurboNorm"; version="1.20.0"; sha256="0rda1gw43nbs9p3axsiwr3vv2rxnpnpsip8pjk8z6jbk01hc76jx"; depends=[affy convert lattice limma marray]; }; + TypeInfo = derive2 { name="TypeInfo"; version="1.38.0"; sha256="1lg9s53a1cn8zqh4jkns7x9ivp4wc1557nphv6g5m227pi008vrx"; depends=[]; }; + UNDO = derive2 { name="UNDO"; version="1.14.0"; sha256="1i9hsyrmzlnkl37wkxkxb4y26qr3ds987kb0f18c1g75pm3pg5vd"; depends=[Biobase BiocGenerics boot MASS nnls]; }; + UniProt_ws = derive2 { name="UniProt.ws"; version="2.12.0"; sha256="09wayrpkk9mpmm8a6ckjyazlyqy9lfnz89xj665khnpblicn0f89"; depends=[AnnotationDbi BiocGenerics RCurl RSQLite]; }; + Uniquorn = derive2 { name="Uniquorn"; version="1.0.8"; sha256="04zc53lh2r4mv6sybs3rf4b7gqv66q1gic8fycyba8fhb4p49glp"; depends=[DBI R_utils RSQLite stringr WriteXLS]; }; + VanillaICE = derive2 { name="VanillaICE"; version="1.34.0"; sha256="038ziyk80ilfwyxg104sz436all2spblwfy7gk64prshzlb04hbc"; depends=[Biobase BiocGenerics BSgenome_Hsapiens_UCSC_hg18 crlmm data_table foreach GenomeInfoDb GenomicRanges IRanges lattice matrixStats oligoClasses S4Vectors SummarizedExperiment]; }; + VariantAnnotation = derive2 { name="VariantAnnotation"; version="1.18.7"; sha256="002kif2c66wbcng953m3g1jys7w1lgz7hh3zsk4jlnhc20jdv1vj"; depends=[AnnotationDbi Biobase BiocGenerics Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment XVector zlibbioc]; }; + VariantFiltering = derive2 { name="VariantFiltering"; version="1.8.6"; sha256="1na1z0hk8xyvlwb43d4knnhaggbirlq1bdsb53q3s9agqkc8lki2"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges graph Gviz IRanges RBGL Rsamtools RSQLite S4Vectors shiny SummarizedExperiment VariantAnnotation XVector]; }; + VariantTools = derive2 { name="VariantTools"; version="1.14.1"; sha256="08kasppyj8h2vrs3sk9m8f1ixk5r689j9i43j0qjdp3kl8kr8ply"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicRanges gmapR IRanges Matrix Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; + Vega = derive2 { name="Vega"; version="1.20.0"; sha256="19pd5jgc83gwgdmi1c2n5hjark0qk20svh0w5ay49xs82f939hj2"; depends=[]; }; + VegaMC = derive2 { name="VegaMC"; version="3.10.0"; sha256="05mkdqriizqddi6p9mnb52zamvgm8w967g1jjbinakhb6fbxqv76"; depends=[Biobase biomaRt genoset]; }; + XBSeq = derive2 { name="XBSeq"; version="1.2.2"; sha256="1ilvzhl373lpxsq9ff5i1hx09s0jj3ahkhg6i4x2dnqciq2kkax4"; depends=[Biobase Delaporte DESeq2 dplyr ggplot2 locfit magrittr matrixStats pracma]; }; + XDE = derive2 { name="XDE"; version="2.18.0"; sha256="032bvdc2740cni5lkvkiybmyf01y6hg8xmz216p73aj75ggbp6i1"; depends=[Biobase BiocGenerics genefilter gtools MergeMaid mvtnorm]; }; + XVector = derive2 { name="XVector"; version="0.12.1"; sha256="1kydy9f5y0ihn2mbkamr1kh0g1d3g1k9d7s4i09qgw9ysr6j414v"; depends=[BiocGenerics IRanges S4Vectors zlibbioc]; }; + a4 = derive2 { name="a4"; version="1.20.0"; sha256="0da0wivzg69f115yc77vajmzkqvb6y98lg35q2gsrb44wyhsvv2f"; depends=[a4Base a4Classif a4Core a4Preproc a4Reporting]; }; + a4Base = derive2 { name="a4Base"; version="1.20.0"; sha256="0pjanqc2z19ya3p87sqfb6avb3xmmhmr96c2bg0psjrh986d67q9"; depends=[a4Core a4Preproc annaffy AnnotationDbi Biobase genefilter glmnet gplots limma mpm multtest]; }; + a4Classif = derive2 { name="a4Classif"; version="1.20.0"; sha256="13a97mbfrzs4wfrm2qswrzw0rxiqc8405imz5lii7qygrmw3l8mr"; depends=[a4Core a4Preproc glmnet MLInterfaces pamr ROCR varSelRF]; }; + a4Core = derive2 { name="a4Core"; version="1.20.0"; sha256="0aqrb7d54mbdpkk1q86y5ixfnp569kzrw9azl7v4fwcb9y54k344"; depends=[Biobase glmnet]; }; + a4Preproc = derive2 { name="a4Preproc"; version="1.20.0"; sha256="06y6v1lj3wbhvr6y6q36qvkpxbbj2wcbhzzwkh4dsfvblwr90sw6"; depends=[AnnotationDbi]; }; + a4Reporting = derive2 { name="a4Reporting"; version="1.20.0"; sha256="0rfaqy40m7mhf3zjgcmsz99sm9f4nvbk8sqxn7lswwr42656ga8g"; depends=[annaffy xtable]; }; + aCGH = derive2 { name="aCGH"; version="1.50.0"; sha256="0g5gxc7204171lb1mf00vdi5yj4cfvvaspzd12xxp6z62ndw8ws7"; depends=[Biobase cluster multtest survival]; }; + acde = derive2 { name="acde"; version="1.2.0"; sha256="04r23mxk2srspzl2sghkjvr98apyq2kz213wmks4kpa6lpzvsipx"; depends=[boot]; }; + adSplit = derive2 { name="adSplit"; version="1.42.0"; sha256="1qrni9jsn9q1y9kskxynyi7pihzf79kbgchpfnbqr8q3xfjbfcm1"; depends=[AnnotationDbi Biobase cluster GO_db KEGG_db multtest]; }; + affxparser = derive2 { name="affxparser"; version="1.44.0"; sha256="125ckbcc1bg041a9khiv9m3hdvzhm7mmi3hk2zp4hzza11a9mww6"; depends=[]; }; + affy = derive2 { name="affy"; version="1.50.0"; sha256="15620q8x0d42izn5hdbbmj7207id5ld1waws2d9ykplbv88ld8a5"; depends=[affyio Biobase BiocGenerics BiocInstaller preprocessCore zlibbioc]; }; + affyContam = derive2 { name="affyContam"; version="1.30.0"; sha256="0bzifl3dvccy2x2al3p9fqwhznxp8j0hisa2sr9hs896s0frc5a6"; depends=[affy affydata Biobase]; }; + affyILM = derive2 { name="affyILM"; version="1.24.0"; sha256="0w2x43xziy1d5nq6vmgnr753z36841y5n552h1liwbf6wzrwm4mi"; depends=[affxparser affy Biobase gcrma]; }; + affyPLM = derive2 { name="affyPLM"; version="1.48.0"; sha256="1g4ci0k5b8i05wpa4kyxm9f83qyb0ym4v8v5vzqq35yhsh78lhw7"; depends=[affy Biobase BiocGenerics gcrma preprocessCore zlibbioc]; }; + affyPara = derive2 { name="affyPara"; version="1.32.0"; sha256="183npqbc6zr8rwkfrsk78s8vha8fcmahwzn4fh39chf010kkxjvy"; depends=[affy affyio aplpack snow vsn]; }; + affyQCReport = derive2 { name="affyQCReport"; version="1.50.0"; sha256="12yk6qdwj1840kys8j8iipsbyrgqkv826arqsvvb0kk9h0bqw3b8"; depends=[affy affyPLM Biobase genefilter lattice RColorBrewer simpleaffy xtable]; }; + affycomp = derive2 { name="affycomp"; version="1.48.0"; sha256="0w1095afp97c2qi2rrlp64yhxh0qrlnrgd6d3q1v608lv9nwknxs"; depends=[Biobase]; }; + affycoretools = derive2 { name="affycoretools"; version="1.44.3"; sha256="11cvxkir715kj3z9qsshss6zpxshynzw19nk9dpvvw7g76wvljfn"; depends=[affy AnnotationDbi Biobase edgeR gcrma ggplot2 GOstats gplots hwriter lattice limma oligoClasses ReportingTools S4Vectors xtable]; }; + affyio = derive2 { name="affyio"; version="1.42.0"; sha256="0rx7vf9fpl4jpnvdcvwh250nnpzxarrrl87dp0pwasmghzdyl9vw"; depends=[zlibbioc]; }; + affylmGUI = derive2 { name="affylmGUI"; version="1.46.0"; sha256="1xspid2m74cyivhmhx4jlpli9pixvx0jfs5r05w4k9mj7jjxaivv"; depends=[affy affyio affyPLM AnnotationDbi BiocInstaller gcrma limma R2HTML tkrplot xtable]; }; + affypdnn = derive2 { name="affypdnn"; version="1.46.0"; sha256="1yvr21w5s7kxl8rcp052f440l2czbwchmyi3hcpiqjvxc6fjmb9q"; depends=[affy]; }; + agilp = derive2 { name="agilp"; version="3.4.0"; sha256="18gd0wj3gz0fbasrfi8jx1r6m0nl7q83p9dcp2jqbkgrqk6r3ki5"; depends=[]; }; + alsace = derive2 { name="alsace"; version="1.8.0"; sha256="054pbjii52325xf3ar1ma8afnmxzwirgygj2xl5y2ngq09lyd9m6"; depends=[ALS ptw]; }; + altcdfenvs = derive2 { name="altcdfenvs"; version="2.34.0"; sha256="009cqk05bld0h0p8wmz8103irs1gbgyrpsnq5nsglywk1i5hqq4a"; depends=[affy Biobase BiocGenerics Biostrings hypergraph makecdfenv S4Vectors]; }; + ampliQueso = derive2 { name="ampliQueso"; version="1.10.0"; sha256="1kliy097yycls88cd3qxdg8vjwbb8v8iv9kp12kdq2ws5rc1gcvn"; depends=[DESeq doParallel edgeR foreach genefilter ggplot2 gplots knitr rgl rnaSeqMap samr statmod VariantAnnotation xtable]; }; + annaffy = derive2 { name="annaffy"; version="1.44.0"; sha256="11dfl5mfzghyc8rc3dnclmwnn4kbrgmzizbqgj5dvy5x70s79hi8"; depends=[AnnotationDbi Biobase DBI GO_db KEGG_db]; }; + annmap = derive2 { name="annmap"; version="1.14.0"; sha256="01s00vg5p0kcpdsh4mib9xiv6y2fygqxi6n7bm6q94vrwaipjwmd"; depends=[Biobase BiocGenerics DBI digest genefilter GenomicRanges IRanges lattice RMySQL Rsamtools]; }; + annotate = derive2 { name="annotate"; version="1.50.1"; sha256="0anjh1b3vckgcfdxdd7jdhzsdivjlgx381i97iz59691kmvf8pqk"; depends=[AnnotationDbi Biobase BiocGenerics DBI RCurl XML xtable]; }; + annotationTools = derive2 { name="annotationTools"; version="1.46.0"; sha256="1ywpxlb3faikjqvaksr4xx1b48daa6yf6vmhs20llp9rrpwnl51p"; depends=[Biobase]; }; + anota = derive2 { name="anota"; version="1.20.0"; sha256="0kzf4lkgb54w8dy5xkadgnf9j4s47xnc53s3xn824k6sdg0l6grh"; depends=[multtest qvalue]; }; + antiProfiles = derive2 { name="antiProfiles"; version="1.12.0"; sha256="1y2sw41rv92wyq4dsqy45r0yqbmvp0dyh2jq8prqaniiiwhxh1b4"; depends=[locfit matrixStats]; }; + apComplex = derive2 { name="apComplex"; version="2.38.0"; sha256="0virfxj7x7nzs1xhh9cia3c951mlcgj918sfzy9w75p6cpciaww8"; depends=[graph org_Sc_sgd_db RBGL Rgraphviz]; }; + aroma_light = derive2 { name="aroma.light"; version="3.2.0"; sha256="0yjmmxh8gl5nr5w3913xvk9nxmxd8qidjmzkdxwf756g01a6gr4m"; depends=[matrixStats R_methodsS3 R_oo R_utils]; }; + arrayMvout = derive2 { name="arrayMvout"; version="1.30.0"; sha256="12ws1bc7jwnys7dj43bd2iib7gdak9i3sirsnkldcyk6ndd18wi1"; depends=[affy affyContam Biobase lumi mdqc parody simpleaffy]; }; + arrayQuality = derive2 { name="arrayQuality"; version="1.50.0"; sha256="0jv03ywh3hngykll9zbywlsdq0wl7629qlm285z3as6kjzv04dkk"; depends=[gridBase hexbin limma marray RColorBrewer]; }; + arrayQualityMetrics = derive2 { name="arrayQualityMetrics"; version="3.28.2"; sha256="08jm8wxrnxik6s9lnchq5crglzxscrnh1a06nbfdaj3h9nxwcb01"; depends=[affy affyPLM beadarray Biobase Cairo genefilter gridSVG Hmisc hwriter lattice latticeExtra limma RColorBrewer setRNG vsn XML]; }; + attract = derive2 { name="attract"; version="1.24.0"; sha256="0d7bcdmk9dgx2yqsvvmq39l63lajx4nvx4km1b3nnqiwqph3cmlr"; depends=[AnnotationDbi Biobase cluster GOstats KEGGREST limma org_Hs_eg_db reactome_db]; }; + bacon = derive2 { name="bacon"; version="1.0.5"; sha256="1cnjlgjivxgswfqvk9yk8b4pi89sr8mxaci486mybpbjvzrjzsc8"; depends=[BiocParallel ellipse ggplot2]; }; + ballgown = derive2 { name="ballgown"; version="2.4.3"; sha256="09nd5792cfi5zbqi58a8ggl4nff6n87jyix0fwn3xgf91qzcrgmr"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges limma RColorBrewer rtracklayer S4Vectors sva]; }; + bamsignals = derive2 { name="bamsignals"; version="1.4.3"; sha256="1xqiqvg52p6fcvhr4146djbz79r3j1kmh75mq7rndwglmiybpwmy"; depends=[BiocGenerics GenomicRanges IRanges Rcpp Rhtslib zlibbioc]; }; + baySeq = derive2 { name="baySeq"; version="2.6.0"; sha256="1c2la9fw65mz4ns07h9n97di1rvzw8q8ga84x4x14y4hcm1zcr5a"; depends=[abind GenomicRanges perm]; }; + beadarray = derive2 { name="beadarray"; version="2.22.2"; sha256="03dzp6fpwwc3znf6by1c1s279ry41c8rlszclixzkmhm1q7vxf43"; depends=[AnnotationDbi BeadDataPackR Biobase BiocGenerics GenomicRanges ggplot2 illuminaio IRanges limma reshape2]; }; + beadarraySNP = derive2 { name="beadarraySNP"; version="1.38.0"; sha256="0wy6zva0z93i4hgcms8fvsbrhk9kzrapsiha72rsirgsd94zxsrw"; depends=[Biobase quantsmooth]; }; + betr = derive2 { name="betr"; version="1.28.0"; sha256="147i92ki54l0m26i6da1mp4cx7d3g3dd3sp9dk2lz0j46wd3476n"; depends=[Biobase limma mvtnorm]; }; + bgafun = derive2 { name="bgafun"; version="1.34.0"; sha256="0z8p6zl2080kkr48q86kqh2bhs3fiq6zzzjj8vgv7mqjwgwf8w06"; depends=[ade4 made4 seqinr]; }; + bgx = derive2 { name="bgx"; version="1.38.0"; sha256="17dmjh35hr4jbxqwvw5r5w99m27ck8zyfdysd86cc679fc1d6ird"; depends=[affy Biobase gcrma]; }; + bigmemoryExtras = derive2 { name="bigmemoryExtras"; version="1.18.1"; sha256="0qv3l5yvg530a3mqdgnp01z3idkxr8qlnd30qplr8wr33gxvqa9f"; depends=[bigmemory]; }; + bioDist = derive2 { name="bioDist"; version="1.44.0"; sha256="1z1pgyrz1fswvsjravamx1w756w7y1ld4v8ijbhms8n39397jzza"; depends=[Biobase KernSmooth]; }; + bioassayR = derive2 { name="bioassayR"; version="1.10.15"; sha256="01gr7k0irkblhivnz4vj2y6pxwkhz2ccw9y4wcw4cf6j0yp6aq9x"; depends=[BiocGenerics ChemmineR DBI Matrix rjson RSQLite XML]; }; + biobroom = derive2 { name="biobroom"; version="1.4.2"; sha256="1i5y32sb8zm23nkxx05b05wcqr1zgg2mh2rfdif3a27ax6r6vkiy"; depends=[Biobase broom dplyr tidyr]; }; + biocGraph = derive2 { name="biocGraph"; version="1.34.0"; sha256="0x1ka2b6gwzncb3s8k4dz8wnwfwiwzcmfzp0xrh94mrmwhda618p"; depends=[BiocGenerics geneplotter graph Rgraphviz]; }; + biocViews = derive2 { name="biocViews"; version="1.40.1"; sha256="1d1g06zwx3xhc07mdhs5x31730xw08fg3x73xyfj0qdy2ykww3f9"; depends=[Biobase graph knitr RBGL RCurl RUnit XML]; }; + biomaRt = derive2 { name="biomaRt"; version="2.28.0"; sha256="1g0w6an9hkflgyhvq6pmrs92s93qarv23v636b9a4bz771wjvm5v"; depends=[AnnotationDbi RCurl XML]; }; + biomformat = derive2 { name="biomformat"; version="1.0.2"; sha256="1shbf6gscvj6n52azvx6phcql3p462bk68cr9gr44lshq3y3g49d"; depends=[jsonlite Matrix plyr rhdf5]; }; + biomvRCNS = derive2 { name="biomvRCNS"; version="1.12.0"; sha256="1yr8bhqmkmvmw26fv53xkam05z17b0chwziv8b793f8zlkq34hw7"; depends=[GenomicRanges Gviz IRanges mvtnorm]; }; + biosigner = derive2 { name="biosigner"; version="1.0.8"; sha256="16v3kvd4zgsws59cz67642dnyzk9a8fjdb5g2mssh6znk9v6ig4a"; depends=[e1071 randomForest ropls]; }; + biosvd = derive2 { name="biosvd"; version="2.8.0"; sha256="11wzvy6x5zvqxl1g3z7xbsmn94ygy7fiazaq97fg88xqcc910kmv"; depends=[Biobase BiocGenerics NMF]; }; + biovizBase = derive2 { name="biovizBase"; version="1.20.0"; sha256="1plrwh1rqm6830xzmws9fna6azyalfnvn6r55bxifnhxy2zi1dpv"; depends=[AnnotationDbi BiocGenerics Biostrings dichromat ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Hmisc IRanges RColorBrewer Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; }; + birta = derive2 { name="birta"; version="1.16.0"; sha256="0nrvdpfjra9ndqk2v07pl8srizg5nfigk3l25d28wzz81ngvcdfq"; depends=[Biobase limma MASS]; }; + birte = derive2 { name="birte"; version="1.8.1"; sha256="1d9hvwc7fcdbk4c93qgmgcrs5fpjjl4f469z8sk60ryrc8v58i9f"; depends=[Biobase glmnet limma MASS nem Rcpp RcppArmadillo]; }; + blima = derive2 { name="blima"; version="1.6.0"; sha256="1hirr1g1q6bn6l877m9zz9vl8vnpdv8ziacp8d2if98anh8xmp4q"; depends=[beadarray Biobase BiocGenerics]; }; + bridge = derive2 { name="bridge"; version="1.36.0"; sha256="027098brim9m6dwf5m5ksjidy4g5q4s7hq92spqvnmjpcfrc9bzx"; depends=[rama]; }; + bsseq = derive2 { name="bsseq"; version="1.8.2"; sha256="0pv4fsw0mjcyq3171d507bwv8aqwzsqdy0v2ghlkx5z94qxsk67g"; depends=[Biobase BiocGenerics data_table GenomeInfoDb GenomicRanges gtools IRanges limma locfit matrixStats permute R_utils S4Vectors scales SummarizedExperiment]; }; + bumphunter = derive2 { name="bumphunter"; version="1.12.0"; sha256="02apjhvwqizlwmcw6qzaqj9p73j5qvnnf7bxzmgqy76m0723k2qi"; depends=[AnnotationDbi BiocGenerics doRNG foreach GenomeInfoDb GenomicFeatures GenomicRanges IRanges iterators limma locfit matrixStats S4Vectors]; }; + caOmicsV = derive2 { name="caOmicsV"; version="1.2.0"; sha256="1a90karz4m13lpsys9zlif6y95xxh4b5g8l6db2v0hfcfrz5msk5"; depends=[bc3net igraph]; }; + canceR = derive2 { name="canceR"; version="1.4.0"; sha256="1fk8mv5jx22y36m7bb8avf51dgpzyhx5j1kk1vglcyym9g4d39cw"; depends=[Biobase cgdsr circlize Formula geNetClassifier GSEABase GSEAlm phenoTest plyr rpart RUnit survival tcltk2 tkrplot]; }; + cancerclass = derive2 { name="cancerclass"; version="1.16.0"; sha256="0j3apzzkh744hha3nzsg0inhgr24dp9l217vgzjyrxq2x6rq9fra"; depends=[binom Biobase]; }; + casper = derive2 { name="casper"; version="2.6.0"; sha256="071x3182mjwd56dchz6mndzc3gpibxbvh30k957qdmmfc6bpadi0"; depends=[Biobase BiocGenerics coda EBarrays gaga GenomeInfoDb GenomicFeatures GenomicRanges gtools IRanges limma mgcv Rsamtools rtracklayer S4Vectors sqldf survival VGAM]; }; + categoryCompare = derive2 { name="categoryCompare"; version="1.16.2"; sha256="0l4zaw9f3h0innxpxphv46f7blk0aa1xfy6r7rya2rqb89rnf3vk"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category colorspace GOstats graph GSEABase hwriter RCytoscape]; }; + ccrepe = derive2 { name="ccrepe"; version="1.8.2"; sha256="0qh1a5j4i1x4w6d7nvv4fb4prhyfhb54knav3849c6flkx4px2pn"; depends=[infotheo]; }; + cellGrowth = derive2 { name="cellGrowth"; version="1.16.0"; sha256="00qijblp5ycjhl6vrvdjfzx87k95p84mxglk1gpnrsqxkvaf61dx"; depends=[lattice locfit]; }; + cellHTS = derive2 { name="cellHTS"; version="1.42.0"; sha256="0ghls72gnsgqc28km5a1i37y0hg2774b09ws20l6jfgj215lsfas"; depends=[Biobase genefilter prada RColorBrewer]; }; + cellHTS2 = derive2 { name="cellHTS2"; version="2.36.0"; sha256="0f6406a1r5gqh25kq6fl9hws5bxjcmg8dz93hf24iqfkri8qzzw8"; depends=[Biobase Category genefilter GSEABase hwriter locfit prada RColorBrewer splots vsn]; }; + cellTree = derive2 { name="cellTree"; version="1.2.2"; sha256="0wzdbyg8yj602mndpmwaqfhyql424w0fgnphyv4v2qr52wwzpz12"; depends=[gplots igraph maptpx slam topGO topicmodels xtable]; }; + cellity = derive2 { name="cellity"; version="1.0.2"; sha256="0qg1g8k6wfamsazj13nlrra3zydj5r2yn42zkzniwyrc40fvlm86"; depends=[AnnotationDbi e1071 ggplot2 mvoutlier org_Hs_eg_db org_Mm_eg_db robustbase topGO]; }; + cghMCR = derive2 { name="cghMCR"; version="1.30.0"; sha256="1g66pc61nj628dip1rysc0mdq6yjhiznv6p8nfw5lmm1kbg3jzn1"; depends=[BiocGenerics CNTools DNAcopy limma]; }; + charm = derive2 { name="charm"; version="2.18.0"; sha256="1lram97r7bqbmi6qxwdjsi4m6vvqry84f2l2afzl1f6v7yjzs1fj"; depends=[Biobase Biostrings BSgenome ff fields genefilter gtools IRanges limma nor1mix oligo oligoClasses preprocessCore RColorBrewer siggenes SQN sva]; }; + chimera = derive2 { name="chimera"; version="1.14.0"; sha256="01j46sycs492j550n6z38nj23s6v0b0mrffpyc2hv95g6nf5vmx7"; depends=[AnnotationDbi Biobase BSgenome_Hsapiens_UCSC_hg19 GenomicAlignments GenomicRanges Homo_sapiens Rsamtools TxDb_Hsapiens_UCSC_hg19_knownGene]; }; + chipenrich = derive2 { name="chipenrich"; version="1.10.0"; sha256="0nx5mmdxjra1vkdssn3dwf6jafdqvjbc53vcqfva0ns4jyyzx89l"; depends=[chipenrich_data GenomicRanges IRanges lattice latticeExtra mgcv plyr rms stringr]; }; + chipseq = derive2 { name="chipseq"; version="1.22.0"; sha256="0b42aikjq4wk83v314yrq1jjmz0vszk9z00xw069h84shz4zrnng"; depends=[BiocGenerics GenomicRanges IRanges lattice S4Vectors ShortRead]; }; + chopsticks = derive2 { name="chopsticks"; version="1.36.0"; sha256="01r6w9y7gw0zja2vpr5g4mp4400njixc0mrlmy010brdfjx6zgg1"; depends=[survival]; }; + chroGPS = derive2 { name="chroGPS"; version="1.16.0"; sha256="1h0nfn74agdhwcr1w1xj0iid3y0g0mkf22b3zajxyr9yjpjws7z8"; depends=[Biobase changepoint cluster DPpackage ICSNP IRanges MASS]; }; + chromDraw = derive2 { name="chromDraw"; version="2.2.0"; sha256="16p54kd35ghdx67pnlcm6v9paic0iwl5sz4343v8rhf8yf9dxyih"; depends=[GenomicRanges Rcpp]; }; + chromPlot = derive2 { name="chromPlot"; version="1.0.0"; sha256="1qwnqmihapc0xiii8ihpw9xralwaac2jn1k62rd1a83w6b3l76f7"; depends=[biomaRt GenomicRanges]; }; + cisPath = derive2 { name="cisPath"; version="1.12.0"; sha256="1a3kjahscpdpgv07d3sjag29szyjnrn2fmgv534ljasjqdk7ay5k"; depends=[]; }; + cleanUpdTSeq = derive2 { name="cleanUpdTSeq"; version="1.10.2"; sha256="1p2c2a7snnz25msmzxa30aijpha8mivpw6rmbqcqhv78xv5a51qq"; depends=[BiocGenerics BSgenome BSgenome_Drerio_UCSC_danRer7 e1071 GenomicRanges seqinr]; }; + cleaver = derive2 { name="cleaver"; version="1.10.2"; sha256="08v4a6rc5yx3vqjdjdzxsxh6m4dnj52ybnchhhx0qq3y8ma4djd3"; depends=[Biostrings IRanges S4Vectors]; }; + clippda = derive2 { name="clippda"; version="1.22.0"; sha256="19in9vc3w35v1ixwc2i7n1nm8zc7i79hhig2n224zjrl15j0bd9a"; depends=[Biobase lattice limma rgl scatterplot3d statmod]; }; + clipper = derive2 { name="clipper"; version="1.12.0"; sha256="0f8zx4s7linhwflnz57qhgx16zkxlgd8mlsck4py5zvs9zz7ph6c"; depends=[Biobase corpcor graph gRbase igraph KEGGgraph Matrix qpgraph RBGL Rcpp]; }; + clonotypeR = derive2 { name="clonotypeR"; version="1.10.2"; sha256="1l4dmbszg4qkw4ksj1lcfrfi5j8fvk51qsc1l7bhvcvzwvbp9p6b"; depends=[]; }; + clst = derive2 { name="clst"; version="1.20.0"; sha256="04wq05qyrxbd138y7npfmnr7d8pngldcm77ksf5ckn92n6gc46nk"; depends=[lattice ROC]; }; + clstutils = derive2 { name="clstutils"; version="1.20.0"; sha256="0fz7mcf7csfmw9r18anliwkh77nv6bhkq6ah6cx1a5nvn05pq4l9"; depends=[ape clst lattice rjson RSQLite]; }; + clustComp = derive2 { name="clustComp"; version="1.0.0"; sha256="0k0l8s50hnpsfsfalfcvjfg38dv9pyi12g8m17nqrrvkldld7p9y"; depends=[sm]; }; + clusterProfiler = derive2 { name="clusterProfiler"; version="3.0.5"; sha256="1sm8dcyps81phf2jz7xc27wg3i43nr32883r2pb4s7syqsl4kvn0"; depends=[AnnotationDbi DOSE ggplot2 GO_db GOSemSim GSEABase IRanges magrittr plyr qvalue S4Vectors tidyr topGO]; }; + clusterStab = derive2 { name="clusterStab"; version="1.44.0"; sha256="039xnvsji3aqvxkj4zq02lv5nk0hkgkhhvk7x9bqhgc1jlafgbrf"; depends=[Biobase]; }; + cn_farms = derive2 { name="cn.farms"; version="1.20.0"; sha256="1f55s7x8g7jyljgcdxvcfgy65h5dm7fmgwxb1qdh557sifalvy0v"; depends=[affxparser Biobase DBI DNAcopy ff lattice oligo oligoClasses preprocessCore snow]; }; + cn_mops = derive2 { name="cn.mops"; version="1.18.0"; sha256="08mhnn6vgbcfb1y84s2f7mk96z5fhafrb72cacfc8ija4l0a86ki"; depends=[Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; }; + cnvGSA = derive2 { name="cnvGSA"; version="1.16.0"; sha256="1ggm0gk6vjx7161xc8pcy7d9z1z4mngxbhjmmnj9w7qd2225yblk"; depends=[brglm doParallel foreach GenomicRanges splitstackshape]; }; + coGPS = derive2 { name="coGPS"; version="1.16.0"; sha256="1y5c43s6ivmin43rahvywm0jqyflw3klzj56b5f5yvbcn13m463w"; depends=[]; }; + coMET = derive2 { name="coMET"; version="1.4.4"; sha256="0cawkc12cj2039p7d416jalz0n6p311lir2f5cdly79n2phi1wyx"; depends=[biomaRt colortools corrplot GenomicRanges ggbio ggplot2 gridExtra Gviz hash IRanges psych rtracklayer S4Vectors trackViewer]; }; + coRNAi = derive2 { name="coRNAi"; version="1.22.0"; sha256="1ib66fljgiqykjs0i9yrqsa979ibz7nllh3f3gybzrs86k8i5p6h"; depends=[cellHTS2 gplots lattice limma locfit MASS]; }; + cobindR = derive2 { name="cobindR"; version="1.10.0"; sha256="16b085jxfc2ph69m8rd7523mkvribbykzv05g54jakqcgz613g6f"; depends=[BiocGenerics biomaRt Biostrings BSgenome gmp gplots IRanges mclust rtfbs seqinr yaml]; }; + codelink = derive2 { name="codelink"; version="1.40.2"; sha256="16a2qshsc7515a35cah6snifv30rbb3gzb034amz1g3a2h24z2bq"; depends=[annotate Biobase BiocGenerics limma]; }; + cogena = derive2 { name="cogena"; version="1.6.2"; sha256="0xy31pr6ginsxzf2lwyd9mnraw690zj37xylm7xfi1w1kchg3nfh"; depends=[amap apcluster Biobase biwt class cluster corrplot devtools doParallel dplyr fastcluster foreach ggplot2 gplots kohonen mclust reshape2]; }; + compEpiTools = derive2 { name="compEpiTools"; version="1.6.4"; sha256="1v22hzp89409vfdi6v56cg4galfb8yr3sqpv9igjjvbbyvyil7p2"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 GO_db gplots IRanges methylPipe Rsamtools S4Vectors topGO XVector]; }; + compcodeR = derive2 { name="compcodeR"; version="1.8.2"; sha256="0w39pnyygvgicdivmcb6p0691fbrmg628d54i1wan070ndxkqn2x"; depends=[caTools edgeR gdata ggplot2 gplots gtools KernSmooth knitr lattice limma markdown MASS modeest ROCR sm stringr vioplot]; }; + consensusSeekeR = derive2 { name="consensusSeekeR"; version="1.0.2"; sha256="1lwzp5l463xg2q97mhf1cz1fgqyf0gwkzipnw1ars6832vpd579s"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges IRanges rtracklayer S4Vectors stringr]; }; + contiBAIT = derive2 { name="contiBAIT"; version="1.0.0"; sha256="1apjm3i4vlkwfgrrby58aimixqlmc56l24dc2vff8s8b568582w6"; depends=[BH BiocParallel clue cluster colorspace diagram DNAcopy exomeCopy GenomicFiles GenomicRanges ggplot2 gplots gtools IRanges Rcpp reshape2 Rsamtools rtracklayer S4Vectors TSP]; }; + conumee = derive2 { name="conumee"; version="1.4.2"; sha256="0hk6chlakd2alghnzsfgzw9bw2js4byqd7lsk5kz3iwb3dds8k9b"; depends=[DNAcopy GenomeInfoDb GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IRanges minfi rtracklayer]; }; + convert = derive2 { name="convert"; version="1.48.0"; sha256="1pr5nn3k8a85r1ssp6hvgayrq6hars82m9v6h5arbz93ksjj4ax3"; depends=[Biobase limma marray]; }; + copa = derive2 { name="copa"; version="1.40.0"; sha256="0ly8af559z74v2lkhiviamb54b7jfpmmnqp9fxvv2c2vg56nnigx"; depends=[Biobase]; }; + copynumber = derive2 { name="copynumber"; version="1.12.0"; sha256="1rrc8mbkh73fizp2jdqqiarxbwryf25lwcf05dwvyqbnaz8c94zl"; depends=[BiocGenerics GenomicRanges IRanges S4Vectors]; }; + cosmiq = derive2 { name="cosmiq"; version="1.6.0"; sha256="0057j6a4lsmjfvjk48x2axmg13f6qbf4pjzc2ijz98laljlakc18"; depends=[faahKO MassSpecWavelet pracma Rcpp xcms]; }; + cpvSNP = derive2 { name="cpvSNP"; version="1.4.0"; sha256="0hcamhbxrs5vpgw2rrm399s17ywnqqi4lx78aga2x8v9l9acga1z"; depends=[BiocParallel corpcor GenomicFeatures ggplot2 GSEABase plyr]; }; + cqn = derive2 { name="cqn"; version="1.18.0"; sha256="01rqvs400ldfcyayjbqd2jpp550v8xh4a4kvic4b82dn3cxb301y"; depends=[mclust nor1mix preprocessCore quantreg]; }; + crlmm = derive2 { name="crlmm"; version="1.30.0"; sha256="0z8b97v04gmcv2zs7pnk3bwccx28whzgkgl4d1gah1b9rjpdifaj"; depends=[affyio Biobase BiocGenerics ellipse ff foreach illuminaio lattice matrixStats mvtnorm oligoClasses preprocessCore RcppEigen SNPchip VGAM]; }; + csaw = derive2 { name="csaw"; version="1.6.1"; sha256="18qj9axgs94vkhxwx91lmpm8rssvwiidgbijzrzabss69y1m9g8y"; depends=[AnnotationDbi BiocGenerics edgeR GenomeInfoDb GenomicFeatures GenomicRanges IRanges limma Rhtslib Rsamtools S4Vectors SummarizedExperiment zlibbioc]; }; + ctc = derive2 { name="ctc"; version="1.46.0"; sha256="0568b5b2f97jdsmhf6biixpjxd1wgh2imalcr94szynpsr5j2knz"; depends=[amap]; }; + cummeRbund = derive2 { name="cummeRbund"; version="2.14.0"; sha256="1ni7ldzbj5sjk2124i7s2p840z4igcaak4kjb28yhv7c0c2nx362"; depends=[Biobase BiocGenerics fastcluster ggplot2 Gviz plyr reshape2 RSQLite rtracklayer S4Vectors]; }; + customProDB = derive2 { name="customProDB"; version="1.12.0"; sha256="1nlyb71mrr7dd73n7gq5dvxp9yisqb8skfdabpn67wvx2kl0qq68"; depends=[AnnotationDbi biomaRt Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges plyr RCurl Rsamtools RSQLite rtracklayer S4Vectors stringr VariantAnnotation]; }; + cycle = derive2 { name="cycle"; version="1.26.0"; sha256="0clsi3dm3dbmfd7g03gvfhc4zczfv6lfivrxgjbhs3wm79zgbl7l"; depends=[Biobase Mfuzz]; }; + cytofkit = derive2 { name="cytofkit"; version="1.4.10"; sha256="1gdbc8k0rqrk83h90rshax6bilbb8wip9xa9bf42301a87lysnk3"; depends=[Biobase destiny doParallel e1071 flowCore FlowSOM ggplot2 ggrepel gplots igraph pdist plyr RANN Rcpp reshape2 Rtsne shiny vegan VGAM]; }; + daMA = derive2 { name="daMA"; version="1.44.0"; sha256="1xx0ba5wjh1ma0fpshy50ajshfpv1w1zdmzrf21jdbq1zz8ciw87"; depends=[MASS]; }; + dada2 = derive2 { name="dada2"; version="1.0.3"; sha256="12bb9vp2yxayzxicnxjs0cb5bria6h9w06qcfn4yhnp4641ql914"; depends=[Biostrings data_table ggplot2 Rcpp reshape2 ShortRead]; }; + dagLogo = derive2 { name="dagLogo"; version="1.10.2"; sha256="018vdgbyfmsrxhkv9kf80yfsgdl3mqmvzfwcw5lanfyipwpl4jgm"; depends=[biomaRt Biostrings grImport motifStack pheatmap]; }; + dcGSA = derive2 { name="dcGSA"; version="1.0.1"; sha256="1nnh3xa7gg1ap24wf79clkm4vrlr9jbvq5f5crl7f5mmfmxpzp43"; depends=[BiocParallel Matrix]; }; + ddCt = derive2 { name="ddCt"; version="1.28.0"; sha256="1k7r0w22as0226sq11kwfb5ihbim5i5bny2qvn7gx86fzyy0br43"; depends=[Biobase BiocGenerics lattice RColorBrewer xtable]; }; + ddgraph = derive2 { name="ddgraph"; version="1.16.0"; sha256="1yqkrzbkjn86mwjf5x5cq1gf8k20hnbhwppzkpspsdcyi68ldbf5"; depends=[bnlearn graph gtools MASS pcalg plotrix RColorBrewer Rcpp]; }; + debrowser = derive2 { name="debrowser"; version="1.0.10"; sha256="1l3pc6xqsvhmjddv27pkndgf9dz529svyj4dkm166yq4vm6pcska"; depends=[annotate AnnotationDbi clusterProfiler DESeq2 DOSE DT edgeR GenomicRanges ggplot2 ggvis gplots igraph IRanges jsonlite org_Hs_eg_db org_Mm_eg_db RColorBrewer ReactomePA reshape2 S4Vectors shiny shinyjs stringi SummarizedExperiment]; }; + deepSNV = derive2 { name="deepSNV"; version="1.18.1"; sha256="150aqdhzzydn2f3nr8zq6r7iwsr8l2jpaig5c8h7li9rhlzjma45"; depends=[Biostrings GenomicRanges IRanges Rhtslib SummarizedExperiment VariantAnnotation VGAM]; }; + deltaGseg = derive2 { name="deltaGseg"; version="1.12.2"; sha256="0m071s1qs9xv0dxb8applj0dldv4aji9vlrflbszw82gp60wzpvf"; depends=[changepoint fBasics ggplot2 pvclust reshape scales tseries wavethresh]; }; + derfinder = derive2 { name="derfinder"; version="1.6.4"; sha256="1iyabwad32g0p69651zph79zi0rvv7bpdrx66qkp7xqllddhxi8i"; depends=[AnnotationDbi BiocParallel bumphunter derfinderHelper GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges Hmisc IRanges qvalue Rsamtools rtracklayer S4Vectors]; }; + derfinderHelper = derive2 { name="derfinderHelper"; version="1.6.3"; sha256="1d58n1xm1rpr65hg5p3y3abylhcp6ih5vnld8ny89492n0ssvf4n"; depends=[IRanges Matrix S4Vectors]; }; + derfinderPlot = derive2 { name="derfinderPlot"; version="1.6.3"; sha256="1mdcd0cxarbjwq4qznlks9mpfz9x4w2cd04jfhfkywpf45fkc797"; depends=[derfinder GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 IRanges limma plyr RColorBrewer reshape2 S4Vectors scales]; }; + destiny = derive2 { name="destiny"; version="1.2.1"; sha256="0cwgdqx07bflrpan49ra2qcxc5dhv5xq733gb3blcam7pvjj7mfw"; depends=[Biobase BiocGenerics FNN Hmisc igraph Matrix proxy Rcpp RcppEigen scatterplot3d VIM]; }; + dexus = derive2 { name="dexus"; version="1.12.1"; sha256="1ra6wxp3wvb9g5qpvh8bm0xb13yqjmnda60mq63hks6jdg2ippmp"; depends=[BiocGenerics]; }; + diffGeneAnalysis = derive2 { name="diffGeneAnalysis"; version="1.54.0"; sha256="0fbk3idxd9hzh9v8gk6dma7l4512k0682kcsfr72h8v0l587ayfr"; depends=[minpack_lm]; }; + diffHic = derive2 { name="diffHic"; version="1.4.3"; sha256="1gvw6kslpadlyhslwngjfh81pgdgzn1h8dpxq32l29fpyrhiig9d"; depends=[BiocGenerics Biostrings BSgenome csaw edgeR GenomeInfoDb GenomicRanges InteractionSet IRanges limma locfit rhdf5 Rhtslib Rsamtools S4Vectors SummarizedExperiment zlibbioc]; }; + diffloop = derive2 { name="diffloop"; version="1.0.2"; sha256="0kgzvidpm6zxgh7rjrh4fvzvvkg4p3nm6pa9l57qnb1223r8ygwv"; depends=[Biobase biomaRt dplyr edgeR foreach GenomeInfoDb GenomicRanges ggplot2 IRanges locfit matrixStats plyr readr reshape2 S4Vectors statmod Sushi]; }; + diggit = derive2 { name="diggit"; version="1.5.2"; sha256="1rpp472cx3pvhi2f1xr52hdxkd9s79w4wp1iy89plam86wrp0xh9"; depends=[Biobase ks viper]; }; + dks = derive2 { name="dks"; version="1.18.0"; sha256="1nzpjph8n9s4kzyyffj6k1pbrvgzryagmr10l97dh2j2qsydz5kh"; depends=[cubature]; }; + domainsignatures = derive2 { name="domainsignatures"; version="1.32.0"; sha256="1jv72qiq5hyajryf91f6mnvbqd4klwsb0viiw4ykid02cj14vwz1"; depends=[AnnotationDbi biomaRt KEGG_db prada]; }; + doppelgangR = derive2 { name="doppelgangR"; version="1.0.2"; sha256="11g57fwhq7yzrzb5wdd07xxb75plrqdmdlar2qvn6kmbi2knn7dg"; depends=[Biobase BiocParallel digest impute mnormt sva]; }; + dualKS = derive2 { name="dualKS"; version="1.32.0"; sha256="1f31qwds9xb0lymb1cdkspk4r65rm6y7v90zrxdd6j1vij42g6m9"; depends=[affy Biobase]; }; + dupRadar = derive2 { name="dupRadar"; version="1.2.2"; sha256="1n07sr5g2hr7rgpcybcaksrihyxlgyghy5l6ldmxqdchzrz90shc"; depends=[Rsubread]; }; + dyebias = derive2 { name="dyebias"; version="1.32.0"; sha256="0g3lslnbbqxfbbyg16is33gd4v55cvqx00bcj0ig8w3xk31lpfph"; depends=[Biobase marray]; }; + easyRNASeq = derive2 { name="easyRNASeq"; version="2.8.2"; sha256="0bmwcx8gpr3a1fl4vz41s9k5rsi4l0jivsfxwvsw1kw87py00qvl"; depends=[Biobase BiocGenerics BiocParallel biomaRt Biostrings DESeq edgeR GenomeInfoDb genomeIntervals GenomicAlignments GenomicRanges IRanges locfit LSD Rsamtools S4Vectors ShortRead SummarizedExperiment]; }; + ecolitk = derive2 { name="ecolitk"; version="1.44.0"; sha256="16zsqrvbwl8ayh4x87ycnzv3iyqjixwd2rkc5xhk3ywd8khvdp0i"; depends=[Biobase]; }; + edge = derive2 { name="edge"; version="2.4.2"; sha256="168qgzszvmv9rjk999a1csvv9k27bgpjl67m9qi46y14y0mnlgmk"; depends=[Biobase jackstraw MASS qvalue snm sva]; }; + edgeR = derive2 { name="edgeR"; version="3.14.0"; sha256="14vrygy7rz5ngaap4kgkvr3j18y5l6m742n79h68plk6iqgmsskn"; depends=[limma]; }; + eiR = derive2 { name="eiR"; version="1.12.2"; sha256="00vzydf6nf6cql7qds5nxbw46cr5w4h02xiayi7ayg7nl54xdfa2"; depends=[BH BiocGenerics ChemmineR DBI digest RCurl RUnit snow snowfall]; }; + eisa = derive2 { name="eisa"; version="1.24.0"; sha256="0pn6ilkvnji974j9qjhvqgfh7427nxaqwjvd22mplsnr81mfrr6d"; depends=[AnnotationDbi Biobase BiocGenerics Category DBI genefilter isa2]; }; + ensemblVEP = derive2 { name="ensemblVEP"; version="1.12.0"; sha256="1akhzdk9kczy34fczff1j420682rkbniwcjx1bqrml75jd87xz36"; depends=[BiocGenerics Biostrings GenomicRanges S4Vectors SummarizedExperiment VariantAnnotation]; }; + ensembldb = derive2 { name="ensembldb"; version="1.4.7"; sha256="1310n4ws68xw0ymac59w172jd61s547wl6zagzkk2zhk00bfwfma"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges Rsamtools RSQLite rtracklayer S4Vectors]; }; + epigenomix = derive2 { name="epigenomix"; version="1.12.0"; sha256="0rhhnh835ah5d9hsv64i6y9hqb9yqmd15f7g4xkc7hws84jw3alb"; depends=[beadarray Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges MCMCpack Rsamtools S4Vectors SummarizedExperiment]; }; + epivizr = derive2 { name="epivizr"; version="2.2.4"; sha256="0jvp08mfk05v2gmmxnbxbr825w2n75dc7jwvw88aymn0cc4bv5mf"; depends=[epivizrData epivizrServer GenomicRanges IRanges S4Vectors]; }; + epivizrData = derive2 { name="epivizrData"; version="1.0.3"; sha256="101jn7fabzk3jkn25vn5r3g4iyjjm9qq8gdqq8wk45m0b5gglf7p"; depends=[Biobase epivizrServer GenomeInfoDb GenomicFeatures GenomicRanges IRanges OrganismDbi S4Vectors SummarizedExperiment]; }; + epivizrServer = derive2 { name="epivizrServer"; version="1.0.3"; sha256="1zzixb6gz43l9wlj4g6givax9rykb26xjx0i1xfnlwbxfl62z3wm"; depends=[httpuv mime R6 rjson]; }; + epivizrStandalone = derive2 { name="epivizrStandalone"; version="1.0.4"; sha256="0sd9vddihba3xwi2yjmzilklavggrwpavffbs9mhrjnh6hl62h73"; depends=[BiocGenerics epivizr epivizrServer GenomeInfoDb GenomicFeatures git2r S4Vectors]; }; + erccdashboard = derive2 { name="erccdashboard"; version="1.6.0"; sha256="0f4q701yd8zghzxj6mj8ljd0h09q7f694mlm566p4867gc4iqs3c"; depends=[edgeR ggplot2 gplots gridExtra gtools limma locfit MASS plyr QuasiSeq qvalue reshape2 ROCR scales stringr]; }; + erma = derive2 { name="erma"; version="0.4.2"; sha256="09fmys40b2vz8py69bblq7chxqwn34mcq460zqlxpj51f7d1zn1d"; depends=[AnnotationDbi Biobase BiocGenerics foreach GenomicFiles GenomicRanges ggplot2 Homo_sapiens rtracklayer S4Vectors shiny SummarizedExperiment]; }; + eudysbiome = derive2 { name="eudysbiome"; version="1.2.0"; sha256="1pcfbx120vyxvdw7hfaqmy1snc2ksvra59kz0qi0mjimvva69hd9"; depends=[Biostrings plyr R_utils Rsamtools]; }; + exomeCopy = derive2 { name="exomeCopy"; version="1.18.0"; sha256="008dvhcha5jjawzvxknqzxgv3cp0v1nxv60ngjkqczzihac66pby"; depends=[GenomeInfoDb GenomicRanges IRanges Rsamtools]; }; + exomePeak = derive2 { name="exomePeak"; version="2.6.0"; sha256="1lwk5y3ma373mcr3l9cq9biq6qj7yc1lljmpa8qndwckgkg2dzl7"; depends=[GenomicAlignments GenomicFeatures Rsamtools rtracklayer]; }; + explorase = derive2 { name="explorase"; version="1.36.0"; sha256="1aa21qgx59g8iipys9rm57ll3smjwz49wi7l2s833svd5z53amkf"; depends=[limma rggobi RGtk2]; }; + fCI = derive2 { name="fCI"; version="1.2.2"; sha256="1fhxhy6jkkly439l2sfz8mg4nknqgh167j6b413iikl2b7w9sg83"; depends=[FNN gtools psych rgl VennDiagram zoo]; }; + fabia = derive2 { name="fabia"; version="2.18.1"; sha256="1hm6zlcky156zb3wppmxhkrm8xjkl12kcn8hh2kc95k6hsajc6zb"; depends=[Biobase]; }; + facopy = derive2 { name="facopy"; version="1.6.0"; sha256="0wgd05sg3h9h8v7y9kva0v6296928bbzbifdkfp2910fsjw8pvdl"; depends=[annotate cgdsr coin data_table DOSE facopy_annot FactoMineR ggplot2 GO_db GOstats graphite gridExtra igraph IRanges MASS nnet reshape2 Rgraphviz S4Vectors scales]; }; + factDesign = derive2 { name="factDesign"; version="1.48.0"; sha256="1cxyzxxz0cli21bqcsg2arcdqnimczql8d47skdwv449mxgcan9c"; depends=[Biobase]; }; + farms = derive2 { name="farms"; version="1.24.0"; sha256="06swwfjbaq2xqbkrabv4jk4xxnxkmvjpx3a0rx0mi0j7fv8i5xs8"; depends=[affy Biobase MASS]; }; + fastLiquidAssociation = derive2 { name="fastLiquidAssociation"; version="1.8.0"; sha256="1d7y120sxh3dqfyhpc4bayplrfwvarfj31imrad3h8mpk6j7a3jg"; depends=[Hmisc LiquidAssociation WGCNA]; }; + fastseg = derive2 { name="fastseg"; version="1.18.0"; sha256="1dnlws7wv9dl5adimzmzcmhg7zlc7xrfxvbzdf86hnh6ci0wvxji"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors]; }; + fdrame = derive2 { name="fdrame"; version="1.44.0"; sha256="16dlcmn8ldh4irxbczr0pyljj98rgjz6xb084nz7gqg7w5mfdakl"; depends=[]; }; + ffpe = derive2 { name="ffpe"; version="1.16.0"; sha256="1nhi0xbicw7iglizq3kxhywmlmyxaj30c588ccaf039v9p0rx165"; depends=[affy Biobase BiocGenerics lumi methylumi sfsmisc TTR]; }; + flagme = derive2 { name="flagme"; version="1.28.0"; sha256="01andc84ls5r3pa0m63mxl3f203kf5i6z00hj4fs1c0999jyv14x"; depends=[CAMERA gcspikelite gplots MASS SparseM xcms]; }; + flipflop = derive2 { name="flipflop"; version="1.10.0"; sha256="1pm64f58m3i4vq95s6y4kan2cw5zc70xjh1z3h6343jqn9vfpnxv"; depends=[GenomicRanges IRanges Matrix]; }; + flowAI = derive2 { name="flowAI"; version="1.2.9"; sha256="1gb3a8f4xsjwspyacdbi2h5kicsawh20dd22xnpg8nlviypqz912"; depends=[changepoint flowCore ggplot2 knitr plyr RColorBrewer reshape2 scales]; }; + flowBeads = derive2 { name="flowBeads"; version="1.10.0"; sha256="1vvggb937iabdn9y6z81sc5vshdyi9017ivz0mf5npi09gm02xb5"; depends=[Biobase flowCore knitr rrcov xtable]; }; + flowBin = derive2 { name="flowBin"; version="1.8.0"; sha256="138h229ny5k9abclby79phlywyckgkqdkd02sdg16028amckmgq7"; depends=[BiocGenerics class flowCore flowFP limma snow]; }; + flowCHIC = derive2 { name="flowCHIC"; version="1.6.0"; sha256="1gy7cgyy1ifn989vgkik3b633li6ir3kznhb4wh21wqvrfy9d39n"; depends=[EBImage flowCore ggplot2 hexbin vegan]; }; + flowCL = derive2 { name="flowCL"; version="1.10.0"; sha256="14z6pyjc5v5zi3l9qiz85yrbhaykyfw77vmvb4nzrvm6mdqm1z5r"; depends=[Rgraphviz SPARQL]; }; + flowClean = derive2 { name="flowClean"; version="1.10.0"; sha256="1slf34rss2l1faj2kszgaiafaj0n0wddfgrnpylav62lfricyzih"; depends=[bit changepoint flowCore sfsmisc]; }; + flowClust = derive2 { name="flowClust"; version="3.10.1"; sha256="0y5mylb09fnyk8a8bhr8g3xpzz3l8pcs7xi91gdxjqamkqi8v700"; depends=[Biobase BiocGenerics clue corpcor ellipse flowCore flowViz graph MCMCpack mnormt RBGL]; }; + flowCore = derive2 { name="flowCore"; version="1.38.2"; sha256="1pspsjmvc3lk06i0mrccdpmp0snpb79ng7dip4lc5rbbr9764ps3"; depends=[BH Biobase BiocGenerics corpcor graph matrixStats Rcpp rrcov]; }; + flowCyBar = derive2 { name="flowCyBar"; version="1.8.0"; sha256="1vj97swrfqh3v50js0hk1agfnjzdawsc0pjrvcncs3avh9awag1r"; depends=[gplots vegan]; }; + flowDensity = derive2 { name="flowDensity"; version="1.6.0"; sha256="1x9jfkv4s5l1pa4cjm5d96l1s9nvxjv8vxlkyax33h009cci4yzs"; depends=[car flowCore GEOmap gplots RFOC]; }; + flowFP = derive2 { name="flowFP"; version="1.30.0"; sha256="1nqqm0zmv9rf46dflshmhcgwi15kg0f7szljxm4l4j4vg377hc0w"; depends=[Biobase BiocGenerics flowCore flowViz]; }; + flowFit = derive2 { name="flowFit"; version="1.10.0"; sha256="0wfsg359zi7bi8wgf5zfwj3gjk5sghynsd9la5x1idsm2hfkqh7x"; depends=[flowCore flowViz gplots kza minpack_lm]; }; + flowMap = derive2 { name="flowMap"; version="1.10.2"; sha256="11fkd89rcwmzfln375p9hgv1z79ipvvhha7krz6wvi0z63lv1131"; depends=[abind ade4 doParallel Matrix reshape2 scales]; }; + flowMatch = derive2 { name="flowMatch"; version="1.8.0"; sha256="071fkhwfwwabbrb1vmwwdvg96lizyf67wvf6g080qac9jsqq2xid"; depends=[Biobase flowCore Rcpp]; }; + flowMeans = derive2 { name="flowMeans"; version="1.32.0"; sha256="0z06479v8xihjyvb8y615yqkd5mkw2879z7qciwkyc32dy3kp6zs"; depends=[Biobase feature flowCore rrcov]; }; + flowMerge = derive2 { name="flowMerge"; version="2.20.0"; sha256="1ibclh3wdz07rqzri61y01ijvrrj8bjmv3l9ddlzgzs6wk07r842"; depends=[feature flowClust flowCore foreach graph Rgraphviz rrcov snow]; }; + flowPeaks = derive2 { name="flowPeaks"; version="1.14.0"; sha256="0ypp5qhl4wxfsbz64d7zvkk606h7wniz4s01zswv61vhygjhr8p0"; depends=[]; }; + flowPlots = derive2 { name="flowPlots"; version="1.20.0"; sha256="01gjkks9cvrjzacpynsv5i9ir4569b7q9yzfzk337xhz5r140brh"; depends=[]; }; + flowQ = derive2 { name="flowQ"; version="1.32.0"; sha256="1bf5avnjn5vg2569pyvrrsq1jv6n0sslyxm9rav2mj321smy05lm"; depends=[BiocGenerics bioDist flowCore flowViz geneplotter IRanges lattice latticeExtra mvoutlier outliers parody RColorBrewer]; }; + flowQB = derive2 { name="flowQB"; version="1.18.4"; sha256="15gk1nbn4yhjw7378d84y3lh4kr1p2bxdra1wfd8scz7nyd6q8kr"; depends=[extremevalues flowCore]; }; + flowStats = derive2 { name="flowStats"; version="3.30.1"; sha256="0sblxshpkw9sx16p1ni9wg6hmhdv9q5i8ssccq41rhrgnyiahacc"; depends=[Biobase BiocGenerics cluster fda flowCore flowViz flowWorkspace KernSmooth ks lattice MASS]; }; + flowTrans = derive2 { name="flowTrans"; version="1.24.0"; sha256="1ri3frs5z702scn88zrymhm8slwl4g1273yn14w065vay9gq2klr"; depends=[flowClust flowCore flowViz]; }; + flowType = derive2 { name="flowType"; version="2.10.0"; sha256="0w0zgddk89bavjhjnkjv7bmqpg2q3d9fxadll4da2dsqzg4nwpy2"; depends=[BH Biobase flowClust flowCore flowMeans flowMerge Rcpp rrcov sfsmisc]; }; + flowUtils = derive2 { name="flowUtils"; version="1.36.0"; sha256="1vd01iw2ki7yqq7g9islqy3z8ks6ciih7j2ja2gff31kvn95lyyc"; depends=[Biobase corpcor flowCore graph RUnit XML]; }; + flowVS = derive2 { name="flowVS"; version="1.4.2"; sha256="0d0xrsscnsxl3b2rm7rhvjm0rhca9x6hckxq5hvnmwdcnyswr2jr"; depends=[flowCore flowStats flowViz]; }; + flowViz = derive2 { name="flowViz"; version="1.36.2"; sha256="1b1sp46lbkdsyx43g3qxx3ggvj8hy17bg71n6l8r6gh0i39fagqn"; depends=[Biobase flowCore hexbin IDPmisc KernSmooth lattice latticeExtra MASS RColorBrewer]; }; + flowWorkspace = derive2 { name="flowWorkspace"; version="3.18.11"; sha256="0i16fq30lbrjq3nkd6lkkz9c9p2azprnsjw9bm0y01wkzjlhc9hz"; depends=[BH Biobase BiocGenerics data_table dplyr flowCore flowViz graph gridExtra lattice latticeExtra ncdfFlow RBGL RColorBrewer Rcpp Rgraphviz scales stringr XML]; }; + flowcatchR = derive2 { name="flowcatchR"; version="1.6.2"; sha256="0p1yb5gz2zyc6g9k3jxsbllvysj65srhnj1bsh57qmk7glkda7wl"; depends=[abind BiocParallel colorRamps EBImage rgl]; }; + fmcsR = derive2 { name="fmcsR"; version="1.14.2"; sha256="07c14iix1c31axskgxf8ffwyrryxpdmsq33nwfpv20951c3n9zc1"; depends=[BiocGenerics ChemmineR RUnit]; }; + focalCall = derive2 { name="focalCall"; version="1.6.0"; sha256="16y4ry894ricj3jyq26y5kcyb90za2f7bpc8n9qxb5b69179dsdw"; depends=[CGHcall]; }; + frma = derive2 { name="frma"; version="1.24.0"; sha256="0rglkly4b0n9hsw47hznymmzk1g6c64qk12bkhfj6hcp8hg4swss"; depends=[affy Biobase BiocGenerics DBI MASS oligo oligoClasses preprocessCore]; }; + frmaTools = derive2 { name="frmaTools"; version="1.24.0"; sha256="1wgybdhqvh1ip9qiqcgnsav0bdm9lspxgb611vh7nga4qlham2y5"; depends=[affy Biobase DBI preprocessCore]; }; + gCMAP = derive2 { name="gCMAP"; version="1.16.0"; sha256="0914vnpzy5kmff9d09x5bdisy01r0j482hm0jy3d7v1c0ij57psl"; depends=[annotate AnnotationDbi Biobase Category DESeq genefilter GSEABase GSEAlm limma Matrix]; }; + gCMAPWeb = derive2 { name="gCMAPWeb"; version="1.12.0"; sha256="1ba4ayc2ylyrijym48lyrmkn2az3x42n8q0cb7snwb9wc8c4pn5x"; depends=[annotate AnnotationDbi Biobase BiocGenerics brew gCMAP GSEABase hwriter Rook yaml]; }; + gQTLBase = derive2 { name="gQTLBase"; version="1.4.2"; sha256="1xhpxpjhnjzwwpmsm9v0jxqikl52fwaw6h8lyp6svzjwcxni863h"; depends=[BatchJobs BBmisc BiocGenerics bit doParallel ff ffbase foreach GenomicFiles GenomicRanges rtracklayer S4Vectors SummarizedExperiment]; }; + gQTLstats = derive2 { name="gQTLstats"; version="1.4.3"; sha256="0lbhmicn47zqblnanwd8j05lnmcgmxz21n7r3fr1vj3wigkl2p77"; depends=[AnnotationDbi BatchJobs BBmisc beeswarm Biobase BiocGenerics doParallel dplyr ffbase foreach GenomeInfoDb GenomicFeatures GenomicFiles GenomicRanges ggplot2 gQTLBase IRanges limma mgcv reshape2 S4Vectors snpStats SummarizedExperiment VariantAnnotation]; }; + gaga = derive2 { name="gaga"; version="2.18.0"; sha256="0pp0k2gqb5ysxxgfw4551lc87rd5b5n4fxkp0c59hdiwqr2gm9jv"; depends=[Biobase coda EBarrays mgcv]; }; + gage = derive2 { name="gage"; version="2.22.0"; sha256="1hcl0ipripvkz8i9bk6vlb0qhx7mq487vay7668h4byjdxw33axq"; depends=[AnnotationDbi graph KEGGREST]; }; + gaggle = derive2 { name="gaggle"; version="1.40.0"; sha256="0xs2rblfh4wa05jdb6fjf8mgqhfwgjzbrf8gq9nsh8lgv4a8azz0"; depends=[graph rJava RUnit]; }; + gaia = derive2 { name="gaia"; version="2.16.0"; sha256="14fnwf7rizc8vp7mjbnw16ar5l21kkgggxn1rrmwpsjd321rzyc3"; depends=[]; }; + garfield = derive2 { name="garfield"; version="1.0.2"; sha256="00xpv7aqx0bh9azmpkxlpwjn0kp0wijpac9ssz9ic9chs2p9b4ga"; depends=[]; }; + gaucho = derive2 { name="gaucho"; version="1.8.2"; sha256="0w09hd7r1y41yv3fyarzrkqw3gzzqk6qplbqrdd74hz7iq4rxcqg"; depends=[GA graph heatmap_plus png Rgraphviz]; }; + gcatest = derive2 { name="gcatest"; version="1.2.2"; sha256="04il1idfisf99d7v50gpk5dscn9vs787mxw4h3ga9f5a73ii1hn9"; depends=[lfa]; }; + gcrma = derive2 { name="gcrma"; version="2.44.0"; sha256="0zvv9wqv5cxs203cfnxgvlf7xmdkcm66jx4jjdamjvvlnlbgbvd4"; depends=[affy affyio Biobase BiocInstaller Biostrings XVector]; }; + gdsfmt = derive2 { name="gdsfmt"; version="1.8.3"; sha256="1cvg87fzgd1fzdphxkl5vh0frbjwrghf2i4hrwgh9h9pszkjpirc"; depends=[]; }; + geNetClassifier = derive2 { name="geNetClassifier"; version="1.12.0"; sha256="0i5pbcsz1y9z75yvc7fdk7820y1hmbr28jfmvm382c43namcki55"; depends=[Biobase e1071 EBarrays minet]; }; + geecc = derive2 { name="geecc"; version="1.6.0"; sha256="11a3dlgzaagb6iyx8pa38kxv50wvb1s96m36w0azcg1z3z77h6yy"; depends=[gplots hypergea MASS]; }; + genArise = derive2 { name="genArise"; version="1.48.0"; sha256="0zyxnx2xx5ywz3cgbmkh7ay0fwgmgn320knbs8mz8bniilc2mm0b"; depends=[locfit tkrplot xtable]; }; + genbankr = derive2 { name="genbankr"; version="1.0.4"; sha256="0x6m9qa61cka549gd0fvywc63rkj2afxhgyfjmyfg4x9dxdxc670"; depends=[Biobase BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges rtracklayer S4Vectors VariantAnnotation]; }; + geneRecommender = derive2 { name="geneRecommender"; version="1.44.0"; sha256="0hij3vx023z9wc905hhq845wya4ivapnpf5cp57vvcssxxks91nl"; depends=[Biobase]; }; + geneRxCluster = derive2 { name="geneRxCluster"; version="1.8.0"; sha256="1nrq2sfazs0zpnlh70lsnalvgqb3z8sqr3fryxqdb4vp26alddbk"; depends=[GenomicRanges IRanges]; }; + genefilter = derive2 { name="genefilter"; version="1.54.2"; sha256="1hmz6as0njvrsrdbgmk72jyclnnqvfdvp6kqv456h43ldq2ajfv5"; depends=[annotate AnnotationDbi Biobase S4Vectors survival]; }; + genefu = derive2 { name="genefu"; version="2.4.2"; sha256="09priw4chfy853dadylfk8h2jjwajccq4kcyjxdfycd8np02f6sq"; depends=[AIMS amap biomaRt iC10 limma mclust survcomp]; }; + geneplotter = derive2 { name="geneplotter"; version="1.50.0"; sha256="0lvrywl0251g4y0h0qlgkbg4l83ja5544c85z1wj30qxiy77iqc2"; depends=[annotate AnnotationDbi Biobase BiocGenerics lattice RColorBrewer]; }; + genoCN = derive2 { name="genoCN"; version="1.24.0"; sha256="1wd21qd153lnq8z69mia84ij8v9323is81njxivh4lqcrr2m0lgr"; depends=[]; }; + genomation = derive2 { name="genomation"; version="1.4.2"; sha256="017hxh3yhizlsswd2vw8504arkckrcgq5zraiw67lldq9wzs5qzg"; depends=[Biostrings BSgenome data_table GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridBase impute IRanges matrixStats plotrix plyr readr reshape2 Rsamtools rtracklayer S4Vectors seqPattern]; }; + genomeIntervals = derive2 { name="genomeIntervals"; version="1.28.0"; sha256="0ic0h1jd1qddqg90j7i55cyjc28jqc1s1qvbjdv0xi2zfl0yfi5g"; depends=[BiocGenerics GenomeInfoDb GenomicRanges intervals IRanges S4Vectors]; }; + genomes = derive2 { name="genomes"; version="3.2.0"; sha256="16gyr1wb822hw92cf00njkgls1i718n67zprpc9q364b9js1095g"; depends=[curl readr]; }; + genoset = derive2 { name="genoset"; version="1.28.2"; sha256="1zrng0c0yws8hlhz09gm68dlc6xk5kmjz3xxqhfg5dr56sdryg1y"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; + genotypeeval = derive2 { name="genotypeeval"; version="1.2.2"; sha256="1asmy822hb6i02jgbx005zb7p02zladhp5zvbgi3apxy9h17fwlw"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges ggplot2 IRanges rtracklayer VariantAnnotation]; }; + genphen = derive2 { name="genphen"; version="1.0.0"; sha256="1030gg9cqmzz4iwssv9y0ai42ar356w6y61aj96p3901jbq78v0v"; depends=[Biostrings e1071 effsize ggplot2 randomForest]; }; + gespeR = derive2 { name="gespeR"; version="1.4.2"; sha256="1npbfm20cbq9raq9d26biy65c1ag705k1s068yc9z6j51w4a9h8m"; depends=[Biobase biomaRt cellHTS2 doParallel dplyr foreach ggplot2 glmnet Matrix reshape2]; }; + ggbio = derive2 { name="ggbio"; version="1.20.2"; sha256="167ppjb4kkxhgxmlzfcgwa7ggm6mkfg2b0z2q1iav0kc9sdy1zz4"; depends=[AnnotationDbi Biobase BiocGenerics Biostrings biovizBase BSgenome ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GGally ggplot2 gridExtra gtable Hmisc IRanges OrganismDbi reshape2 Rsamtools rtracklayer S4Vectors scales SummarizedExperiment VariantAnnotation]; }; + ggcyto = derive2 { name="ggcyto"; version="1.0.6"; sha256="1xpavy6dcgq5zwlyi7wb0ldavqdh74bkg2plpbp7lmmn496w26n6"; depends=[data_table flowCore flowWorkspace ggplot2 gridExtra ncdfFlow plyr RColorBrewer scales]; }; + ggtree = derive2 { name="ggtree"; version="1.4.20"; sha256="15fnkbq9jcw5n54z5vm5dj9giaxm0a8w3017gkd3klyywlcpk7mp"; depends=[ape ggplot2 jsonlite magrittr tidyr]; }; + girafe = derive2 { name="girafe"; version="1.24.0"; sha256="0qr0mv1biv6xs86sc3kv97p19kc12hvxa96mhbpw4qabbmaaadh8"; depends=[Biobase BiocGenerics Biostrings genomeIntervals intervals IRanges Rsamtools S4Vectors ShortRead]; }; + globalSeq = derive2 { name="globalSeq"; version="1.0.2"; sha256="1hbi19i0jyg3axjgmvakdckk5hdbm6p3hxxnqh2xgnf7qwkj74v3"; depends=[]; }; + globaltest = derive2 { name="globaltest"; version="5.26.0"; sha256="0myg87l3aqrk03qiibzya8fx12xn7w3myizhhvbd84v86xgjl8dp"; depends=[annotate AnnotationDbi Biobase survival]; }; + gmapR = derive2 { name="gmapR"; version="1.14.0"; sha256="034z2z2gav7nny0c9npn9h71hlq15ag866fbab7ii8rqvapy6vh0"; depends=[Biobase BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; + goProfiles = derive2 { name="goProfiles"; version="1.34.0"; sha256="0m2cki0mrf874nhj390zb7i41v6a9lrr22sx2x6yq22qs6067p32"; depends=[AnnotationDbi Biobase GO_db]; }; + goTools = derive2 { name="goTools"; version="1.46.0"; sha256="15n35kp826lgp0bl91p1zxy65a7vx8ln895vqp31ss06hqlgrksf"; depends=[AnnotationDbi GO_db]; }; + goseq = derive2 { name="goseq"; version="1.24.0"; sha256="05zm23bj1i9al9bsg870pyk1r663vsv08sz9wn5dmriwv9rq2i4b"; depends=[AnnotationDbi BiasedUrn BiocGenerics geneLenDataBase GO_db mgcv]; }; + gpls = derive2 { name="gpls"; version="1.44.0"; sha256="07v0k6bsf35rkj7irsz7rwfba3fnnszy2kx6n0qzphlcgwda94hx"; depends=[]; }; + gprege = derive2 { name="gprege"; version="1.16.0"; sha256="103z7bsjqwc4d4mimaavrd46v8l0pchrahhgqkkpyjxq6ibk7krw"; depends=[gptk]; }; + graph = derive2 { name="graph"; version="1.50.0"; sha256="0ys5s19m5r30rlr0fnx2h0z2qw7n2xrad4l2yfb1bbrk8dwyf4pi"; depends=[BiocGenerics]; }; + graphite = derive2 { name="graphite"; version="1.18.1"; sha256="0s9si7jz044nv80r0zyy4kvc0sjd8mckhnhn05bb16ym5650qg2r"; depends=[AnnotationDbi BiocGenerics graph rappdirs]; }; + groHMM = derive2 { name="groHMM"; version="1.6.0"; sha256="1l9mcyzyc548114ysb9r0q7hgzw3yy7gpiahrzkzj6hblc4f1jyp"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS rtracklayer S4Vectors]; }; + gtrellis = derive2 { name="gtrellis"; version="1.4.2"; sha256="133wlm7807rz9wa37prjrwginwlljbyvf5j7zlslzihpfj3b1q2n"; depends=[circlize GenomicRanges GetoptLong IRanges]; }; + gwascat = derive2 { name="gwascat"; version="2.4.2"; sha256="1q6wfp234c2ja2k3r2m21mfgwz3dwy2ayml9vxbdhgsi496ixray"; depends=[AnnotationDbi AnnotationHub BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 gQTLstats graph Gviz Homo_sapiens IRanges Rsamtools rtracklayer S4Vectors snpStats SummarizedExperiment VariantAnnotation]; }; + h5vc = derive2 { name="h5vc"; version="2.6.3"; sha256="0x4frfkx6l30ns686ybqqhqvxn3x8gwm5m9zbcvnk8yd864jxfwh"; depends=[abind BatchJobs BiocParallel Biostrings GenomeInfoDb GenomicRanges ggplot2 gridExtra h5vcData IRanges reshape rhdf5 Rsamtools S4Vectors]; }; + hapFabia = derive2 { name="hapFabia"; version="1.14.1"; sha256="1fmlw49ab6b5ry7qsh9riismki8slh4kym4agpkfbdj4qjhicdwq"; depends=[Biobase fabia]; }; + hiAnnotator = derive2 { name="hiAnnotator"; version="1.6.2"; sha256="1p6w035pm6ikkf8nv1lah0055rblmj8313bjwxkqm8m5g51imz7b"; depends=[BSgenome dplyr foreach GenomicRanges ggplot2 iterators rtracklayer scales]; }; + hiReadsProcessor = derive2 { name="hiReadsProcessor"; version="1.8.2"; sha256="18iq1f6hvxi3n7bm25np8daa5bvmyayhq47w2qf1nbbl7j8vyi4z"; depends=[BiocGenerics BiocParallel Biostrings dplyr GenomicAlignments GenomicRanges hiAnnotator rSFFreader sonicLength xlsx]; }; + hierGWAS = derive2 { name="hierGWAS"; version="1.2.0"; sha256="0gnc9cnwy9ji8r7jiy2irsikb06v044cmhpjfgphsqchaf53h4sv"; depends=[fastcluster fmsb glmnet]; }; + hopach = derive2 { name="hopach"; version="2.32.0"; sha256="15x6mrk9f0vjbddafzr8g5p3j1a7z5ws2a361nj83djnx4z7mnh8"; depends=[Biobase BiocGenerics cluster]; }; + hpar = derive2 { name="hpar"; version="1.14.2"; sha256="0rmnwrkblljlpa1d19sxjwqw6hcqx6aajl2vv8g9qlcwklp0igl8"; depends=[]; }; + htSeqTools = derive2 { name="htSeqTools"; version="1.18.0"; sha256="0n05bsqxmji335nkfg7a38i91k8nf7mf1vkhi8mg6mags7sqysl2"; depends=[Biobase BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges MASS S4Vectors]; }; + hyperdraw = derive2 { name="hyperdraw"; version="1.24.0"; sha256="1bng0b48blj3mmga799j2103lwdnrh1shbp0jjczzyrhh8l30xby"; depends=[graph hypergraph Rgraphviz]; }; + hypergraph = derive2 { name="hypergraph"; version="1.44.0"; sha256="10vyxw05a6asyvphzxdv10fl437nqwxcy8z2maqijxhhkrq91mz9"; depends=[graph]; }; + iASeq = derive2 { name="iASeq"; version="1.16.0"; sha256="0ggcpygyf4x39ky1y0p7f67i0knnhrmpab20gcf5cs5239l1k369"; depends=[]; }; + iBBiG = derive2 { name="iBBiG"; version="1.16.0"; sha256="1776i6jsgfhwmbzflx487l7aav5a9xa5v3md6wzwkalmq4vz1h0s"; depends=[ade4 biclust xtable]; }; + iBMQ = derive2 { name="iBMQ"; version="1.12.0"; sha256="14rmnzzq5ix2in0hhz36nzixvm51jgsrhrzp28767vfrw3d59dqn"; depends=[Biobase ggplot2]; }; + iCARE = derive2 { name="iCARE"; version="1.0.0"; sha256="035i02mi92kqsrn1n81j7bqxzf1czra4fdrfya0ihjyvjl363hsx"; depends=[]; }; + iCOBRA = derive2 { name="iCOBRA"; version="1.0.2"; sha256="16f7vdlwnnlk73lwi3y5yvcb5ww9qkc6ynyyafi73a4mj4vyiw0x"; depends=[dplyr DT ggplot2 limma reshape2 ROCR scales shiny shinyBS shinydashboard UpSetR]; }; + iCheck = derive2 { name="iCheck"; version="1.2.0"; sha256="16rr1l1s0kbhk8xhbr4cac0xb7sd9p92y9dm8hyi5hd65w3yryzc"; depends=[affy Biobase GeneSelectMMD gplots limma lmtest lumi MASS preprocessCore randomForest rgl scatterplot3d vsn]; }; + iChip = derive2 { name="iChip"; version="1.26.0"; sha256="1271033d2rfj4ib50955rk3bspj78h1aslmf8pkfbmb2y1pm1jz9"; depends=[limma]; }; + iClusterPlus = derive2 { name="iClusterPlus"; version="1.8.0"; sha256="1ryalbvf24pd2lk3brxy6zb616n5sfqn484lxgsl04mb8k4qppzd"; depends=[]; }; + iGC = derive2 { name="iGC"; version="1.2.2"; sha256="0p8nhybxn82c82i6z7hy4ddlnkrw5r3zsal67wkvbxw40h0ljpmx"; depends=[data_table plyr]; }; + iPAC = derive2 { name="iPAC"; version="1.16.0"; sha256="0qh1fikcqkl2hxqfkgxy16nlzqnqkkpz93b81kbpj1bgb4y3amnm"; depends=[Biostrings gdata multtest scatterplot3d]; }; + iSeq = derive2 { name="iSeq"; version="1.24.0"; sha256="0sbnnr0mcnidvk3bb303a3i4n5f5lf3c2p3rnaj1m96msfjfhfmw"; depends=[]; }; + ibh = derive2 { name="ibh"; version="1.20.0"; sha256="1fx1bb14z0is1zbarxy3bd7ynrlxf97z2501k2ajq5c5ijm05kkr"; depends=[simpIntLists]; }; + idiogram = derive2 { name="idiogram"; version="1.48.0"; sha256="0p0ji1yqp8ygzm8bqdq5zw73rw1n5c9y104k2bnf90vp9q8428kr"; depends=[annotate Biobase plotrix]; }; + illuminaio = derive2 { name="illuminaio"; version="0.14.0"; sha256="0vywygdg57msqm1a9m5ld40rf06fir686gc0h5ygs9gcs2rm7979"; depends=[base64]; }; + imageHTS = derive2 { name="imageHTS"; version="1.22.0"; sha256="0rrjwf1yfdln7xwsizssjfavr4dwmdm1bwys09bk8ja63d5s9zb5"; depends=[Biobase cellHTS2 e1071 EBImage hwriter vsn]; }; + immunoClust = derive2 { name="immunoClust"; version="1.4.0"; sha256="144nhjg6r3jjn7ws0gqfhzsfhkx4b2azvijrjqndr958bip81qnr"; depends=[flowCore lattice]; }; + impute = derive2 { name="impute"; version="1.46.0"; sha256="0v9ibgv8kp8il52miz7b7z65mv6irqxylx6lfzkxgvxd970dgrz0"; depends=[]; }; + inSilicoDb = derive2 { name="inSilicoDb"; version="2.7.0"; sha256="14sv2rwfjv3h5l9qxd4c1wc83gfghmwbwds92g4wfvflbda9i6g8"; depends=[Biobase RCurl rjson]; }; + inSilicoMerging = derive2 { name="inSilicoMerging"; version="1.15.0"; sha256="1dvbkjn5pj6w6ixrkvljbz843dsmihcnhbs6vm6a1iyc2l6dx41k"; depends=[Biobase]; }; intansv = derive2 { name="intansv"; version="1.10.0"; sha256="0fgc45gaqm2vpvcbvwm54w93i7fmp4pv365pqqcq6sy3lilzxn92"; depends=[BiocGenerics GenomicRanges ggbio IRanges plyr]; }; - interactiveDisplay = derive2 { name="interactiveDisplay"; version="1.8.0"; sha256="0gkjjdx20438hnbs6hhshkx0k4ja2xci0mcg2qcbgg0ajsi0zx86"; depends=[AnnotationDbi BiocGenerics Category ggplot2 gridSVG interactiveDisplayBase plyr RColorBrewer reshape2 shiny XML]; }; - interactiveDisplayBase = derive2 { name="interactiveDisplayBase"; version="1.8.0"; sha256="1zibrbykz45w04xn9c0fc65jjqcg9dqzlpac248ry4hqfw21yxw8"; depends=[BiocGenerics shiny]; }; - inveRsion = derive2 { name="inveRsion"; version="1.18.0"; sha256="05jwxwjyvkilfmygf16k3d55ma7s1ya7lyxh8v4pd8gql7v3kllq"; depends=[haplo_stats]; }; - iontree = derive2 { name="iontree"; version="1.16.0"; sha256="1pamgkg85qi3iqqws7a3l8lph428alz1dzf08x309njqz8cbzw91"; depends=[rJava RSQLite XML]; }; - isobar = derive2 { name="isobar"; version="1.16.0"; sha256="1awi1z5aljmagxyrj3xfw0j24r8acrq0vrq691jrfjx625aqq81n"; depends=[Biobase distr plyr]; }; - iterativeBMA = derive2 { name="iterativeBMA"; version="1.28.0"; sha256="0y9api2dibn5n0yqvyc2xag4xlzxq0h9sdf29ri9v1kfvpgksn9y"; depends=[Biobase BMA leaps]; }; - iterativeBMAsurv = derive2 { name="iterativeBMAsurv"; version="1.28.0"; sha256="02g355bmjf1lcdkgr62a8sf2vckmdziia45w5gh4mmyf5hk4w9fi"; depends=[BMA leaps survival]; }; - jmosaics = derive2 { name="jmosaics"; version="1.10.0"; sha256="1q67ylrgc2abny2wxgsl1cni225inar1dhim0psrbrf5ik77kgmk"; depends=[mosaics]; }; - joda = derive2 { name="joda"; version="1.18.0"; sha256="0fjbxczwkn8f4p0h8dgi3vfn4qf9a650wmp01q20j7f0jsmmb06x"; depends=[bgmm RBGL]; }; - kebabs = derive2 { name="kebabs"; version="1.4.1"; sha256="1fqvp17x6z7hpgh4z71npvvskhd4j68g3p67ifc8phrmlqyaa84d"; depends=[Biostrings e1071 IRanges kernlab LiblineaR Matrix Rcpp S4Vectors XVector]; }; - keggorthology = derive2 { name="keggorthology"; version="2.22.0"; sha256="1sl0h63f3vvydbbj90hp5arswr6mzj5xlhqa6wbj3jhyq169qi5x"; depends=[AnnotationDbi DBI graph hgu95av2_db]; }; - lapmix = derive2 { name="lapmix"; version="1.36.0"; sha256="1ambwxc4j6y959ww48s09pyrf4v1fghv6grybmy41vhczqvqhkdx"; depends=[Biobase]; }; - ldblock = derive2 { name="ldblock"; version="1.0.0"; sha256="1snzfyfvji26n5j9jl9ib9wj7m8aln187zchpv182szrivqd1yqc"; depends=[Matrix snpStats]; }; - les = derive2 { name="les"; version="1.20.0"; sha256="0dgajsws35qg1x5i12hnp0p3qixq6nqsxm16qws93vhvgmnl540a"; depends=[boot fdrtool gplots RColorBrewer]; }; - lfa = derive2 { name="lfa"; version="1.0.0"; sha256="1lxirjinq6r3g749li0m8llrv195q9kjcwmd9gyvk84i570nliy9"; depends=[corpcor]; }; - limma = derive2 { name="limma"; version="3.26.8"; sha256="0pw91q8ahjzagyx7p564z812lczvbbc6m4mymwn30di8xv1vd3mv"; depends=[]; }; - limmaGUI = derive2 { name="limmaGUI"; version="1.46.0"; sha256="14avwg48kf0m203yzlz69nbn2zcw65v70d6lkf65ahkl3rapij1h"; depends=[AnnotationDbi BiocInstaller gcrma limma R2HTML tkrplot xtable]; }; - lmdme = derive2 { name="lmdme"; version="1.12.0"; sha256="102v67asih0czi8yrc9v859dwfb2c3s14qppcjdif6b04xs92pgv"; depends=[limma pls stemHypoxia]; }; - logicFS = derive2 { name="logicFS"; version="1.40.0"; sha256="10c154jy6lrycsnk8912572m5hjv2ngf2q3gr1wmavyan4bsqwvd"; depends=[LogicReg mcbiopi]; }; - logitT = derive2 { name="logitT"; version="1.28.0"; sha256="1qbimjjl5xv5h30r74bd86dg10djajb01qav6gp95l6f59fx2j1q"; depends=[affy]; }; - lol = derive2 { name="lol"; version="1.18.0"; sha256="0dc3ga7yalzfngh3y33sa4bchhbxgndkls3vdxh4yzcsdvk60i1f"; depends=[Matrix penalized]; }; - lpNet = derive2 { name="lpNet"; version="2.2.0"; sha256="0sscs69mwzsz8bifgkmaa08zms6vqqls727p8gz4zq79nlw726yj"; depends=[lpSolve nem]; }; - lumi = derive2 { name="lumi"; version="2.22.1"; sha256="0c1vzplvjk6b9p81cj76vs5rp33swdp0m142hwbw4jfw46rx0aqq"; depends=[affy annotate AnnotationDbi Biobase DBI GenomicFeatures GenomicRanges KernSmooth lattice MASS methylumi mgcv nleqslv preprocessCore RSQLite]; }; - mAPKL = derive2 { name="mAPKL"; version="1.2.0"; sha256="1k1yxxj6371sagiy63fl1dh8d71cqg6gvx8pkjy3ahp1hbh45b6l"; depends=[AnnotationDbi apcluster Biobase clusterSim e1071 igraph limma multtest parmigene reactome_db]; }; - mBPCR = derive2 { name="mBPCR"; version="1.24.0"; sha256="1n9s75jx7pkq8vsq2ycyfgnk5mrfx3lr0ykp486ns8xmas3yyn3c"; depends=[Biobase oligoClasses SNPchip]; }; - mQTL_NMR = derive2 { name="mQTL.NMR"; version="1.4.0"; sha256="0flb1lqsq7ldicidag20icnhmds2qr85yrbjsv4h06klggq2vjvg"; depends=[GenABEL MASS outliers qtl]; }; - maCorrPlot = derive2 { name="maCorrPlot"; version="1.40.0"; sha256="1chv95b3fi1jiy7nbxfj4szhjqm1ycb3xarjrd20xln5msainf7h"; depends=[lattice]; }; - maPredictDSC = derive2 { name="maPredictDSC"; version="1.8.0"; sha256="08wb622jp98xnqx8hh09n98ln8ifc21c0bc5gah5y68ldmg0x2iw"; depends=[affy AnnotationDbi caret class e1071 gcrma hgu133plus2_db limma LungCancerACvsSCCGEO MASS ROC ROCR]; }; - maSigPro = derive2 { name="maSigPro"; version="1.42.0"; sha256="06a69r685qpjyi49yq7lw444533m9hhqb56fpki2w0067wh6a54m"; depends=[Biobase limma MASS Mfuzz]; }; - maanova = derive2 { name="maanova"; version="1.40.0"; sha256="112hbyfw18dshshsmbaylwra169w6bbwwqql3d96s0in1fl20mdl"; depends=[Biobase]; }; - macat = derive2 { name="macat"; version="1.44.1"; sha256="061y6a1q7c9r9a01hy6l86wc085f530y7hjw7asx506cf91ifwdk"; depends=[annotate Biobase]; }; - made4 = derive2 { name="made4"; version="1.44.0"; sha256="161vs8jbc711n9x67i31818a3nzjp74rm3dw20aqrhfbikvi9r7g"; depends=[ade4 gplots RColorBrewer scatterplot3d]; }; - maigesPack = derive2 { name="maigesPack"; version="1.34.0"; sha256="08pszyq03f1vjgirq0zcv31m4c0acdbfh622qiw0x0w1gz6plm0g"; depends=[convert graph limma marray]; }; - makecdfenv = derive2 { name="makecdfenv"; version="1.46.0"; sha256="0ca7hc4apamg8i2b8fb56mchksw26jj139clq3vxw6nl4ny9ipvg"; depends=[affy affyio Biobase zlibbioc]; }; - manta = derive2 { name="manta"; version="1.16.0"; sha256="0j6zll7b1qqdnydg59hywargw6bivry3cx5m2wpj79wn673kib3c"; depends=[caroline edgeR Hmisc]; }; - marray = derive2 { name="marray"; version="1.48.0"; sha256="103nag8ygjyw8p9v94y2c6lgiynbz2x4s6i71l7ydv2ipfr6b2fb"; depends=[limma]; }; - maskBAD = derive2 { name="maskBAD"; version="1.14.0"; sha256="18lvg85ss29wwxb60a2nwpc1v7d7cdl5al2wki1c0d770f7b232r"; depends=[affy gcrma]; }; - massiR = derive2 { name="massiR"; version="1.6.0"; sha256="1wfvzx2ysl2hlcx4nlzfw5lb4bal6ysmyzf6gw3y4023dyrlzb64"; depends=[Biobase cluster diptest gplots]; }; - matchBox = derive2 { name="matchBox"; version="1.12.0"; sha256="1p92c8vp9c65g8qzb3jlz7lniizpkymry1mh4p7izclf5mrrwk3s"; depends=[]; }; - mcaGUI = derive2 { name="mcaGUI"; version="1.18.0"; sha256="0rxhs059z0l6lal33m78hkp73k46c2pdy0nn5lxwxr590fglvh0f"; depends=[bpca foreign gWidgets gWidgetsRGtk2 lattice MASS OTUbase proto vegan]; }; - mdgsa = derive2 { name="mdgsa"; version="1.2.0"; sha256="05lqj7d4464z976w4rvnzpv1abihq1fpxhcl2zyg5izwqpq6ga9r"; depends=[AnnotationDbi cluster DBI GO_db KEGG_db Matrix]; }; - mdqc = derive2 { name="mdqc"; version="1.32.0"; sha256="1aaria9nm9b4bl6r4lx0icjb20zrxcc0g8bj9jn2d04s8bzihmjw"; depends=[cluster MASS]; }; - meshr = derive2 { name="meshr"; version="1.6.2"; sha256="1gpdfgzxcaz0m2a6aji7zmr7bymdh7h4cd5agcwl3ip3lzsj76nb"; depends=[BiocGenerics Category cummeRbund fdrtool MeSH_Aca_eg_db MeSH_AOR_db MeSH_Bsu_168_eg_db MeSH_db MeSH_Hsa_eg_db MeSH_PCR_db MeSH_Syn_eg_db MeSHDbi org_Hs_eg_db S4Vectors]; }; - messina = derive2 { name="messina"; version="1.6.0"; sha256="039409wfdbv4hcj4zif581dy03l1wqg7nr1g8yc7ispqwpxnhwzf"; depends=[foreach ggplot2 plyr Rcpp survival]; }; - metaArray = derive2 { name="metaArray"; version="1.48.0"; sha256="1zx9ymjqh851r33jv7fpyy4319fqi2kgjgxxbgpq1xl6cfkglr4h"; depends=[Biobase MergeMaid]; }; - metaMS = derive2 { name="metaMS"; version="1.6.0"; sha256="1kkxx5hvjkljzrdq6g00dzw0k8y15h7q2fa9j8899jvq9p11yyiq"; depends=[BiocGenerics CAMERA Matrix robustbase xcms]; }; - metaSeq = derive2 { name="metaSeq"; version="1.10.0"; sha256="10nx4jr2mwk5zw6mag0j6v2rnn6h0pnp97pdmmsz8fgkx6245ygm"; depends=[NOISeq Rcpp snow]; }; - metaX = derive2 { name="metaX"; version="1.0.2"; sha256="1mqxwb4p1mw5821apyqb22vq2f091n95yar4x4h6cf1h3jxglj12"; depends=[ape BBmisc boot bootstrap CAMERA caret data_table DiffCorr DiscriMiner doParallel dplyr faahKO ggplot2 igraph impute lattice missForest mixOmics Nozzle_R1 pcaMethods pheatmap pls plyr preprocessCore pROC RColorBrewer RCurl reshape2 scatterplot3d SSPA stringr VennDiagram vsn xcms]; }; - metabomxtr = derive2 { name="metabomxtr"; version="1.4.0"; sha256="1zwqz9yl154c3h7qhrmkf2zcvzi2azm1sdkvrpyxg7zjks3bmyz8"; depends=[Biobase Formula multtest optimx plyr]; }; - metagene = derive2 { name="metagene"; version="2.2.1"; sha256="1l0zfhk4gnm3gvy24igismpb3j3m6vh4mb4q41cfrpkmxn2zlvaq"; depends=[BiocParallel DBChIP GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gplots IRanges muStat R6 Rsamtools rtracklayer]; }; - metagenomeFeatures = derive2 { name="metagenomeFeatures"; version="1.0.0"; sha256="1lbb505s976j2jxxi7snhd1yahcs0ca9qnicq12b5jmp3ki1br9k"; depends=[Biobase Biostrings dplyr lattice lazyeval magrittr RSQLite ShortRead stringr]; }; - metagenomeSeq = derive2 { name="metagenomeSeq"; version="1.12.0"; sha256="0bqxm37ds9a5dibzlxnbdvvqcyzwxxnnw7i6a04g84k885zzxr3a"; depends=[Biobase foreach glmnet gplots limma Matrix matrixStats RColorBrewer]; }; - metahdep = derive2 { name="metahdep"; version="1.28.0"; sha256="1vl87mc4yl3il9hmsybbwjga610p3lh5717n4csjyaywskqa1ixk"; depends=[]; }; - metaseqR = derive2 { name="metaseqR"; version="1.10.0"; sha256="1gy5ywrxqwd8lizbj9lk6qck6zwk670j5y2f0ayz6xvkki4vab97"; depends=[baySeq biomaRt brew corrplot DESeq EDASeq edgeR gplots limma log4r NBPSeq NOISeq qvalue rjson vsn]; }; - methVisual = derive2 { name="methVisual"; version="1.22.0"; sha256="1kcqhlv0lmr7wlkxjl9qqv2676pwna3i4w5xpm4inwgcb892zgjm"; depends=[Biostrings ca gridBase gsubfn IRanges plotrix sqldf]; }; - methyAnalysis = derive2 { name="methyAnalysis"; version="1.12.1"; sha256="1fl07k42j292cjr6vgwra84zhwpkaygjr7pqbkiq0abi29ifgw7i"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt genefilter GenomeInfoDb GenomicFeatures GenomicRanges genoset Gviz IRanges lumi methylumi org_Hs_eg_db rtracklayer VariantAnnotation]; }; - methylMnM = derive2 { name="methylMnM"; version="1.8.0"; sha256="1jj6s6pr3hih31n98jsgil3k7n19n5ab4rylfmfnzlbgsdmnw4kq"; depends=[edgeR statmod]; }; - methylPipe = derive2 { name="methylPipe"; version="1.4.5"; sha256="013rrdm7nx9m9g0ym0j1cvzrgplw149ivsrfcjfylxdjgwvw61yz"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicRanges gplots Gviz IRanges marray Rsamtools S4Vectors SummarizedExperiment]; }; - methylumi = derive2 { name="methylumi"; version="2.16.0"; sha256="1glp1p7jvnsqarpw92nha6hrrhalh5wm262imwmpbfiik7glp217"; depends=[annotate AnnotationDbi Biobase BiocGenerics FDb_InfiniumMethylation_hg19 genefilter GenomeInfoDb GenomicRanges ggplot2 illuminaio IRanges lattice matrixStats minfi reshape2 S4Vectors scales SummarizedExperiment]; }; - mgsa = derive2 { name="mgsa"; version="1.18.0"; sha256="1qdjl9cfyi2fmfm3nlzhp9wdpmvagddvb2cwy6j1pynbx03m55gl"; depends=[gplots]; }; - miRLAB = derive2 { name="miRLAB"; version="1.0.1"; sha256="0mkhrzlpf65kc3vwxlc2ckymaziqwxdc0q2rxd77ajdblbccbg59"; depends=[energy entropy glmnet gplots Hmisc httr impute limma pcalg RCurl Roleswitch stringr]; }; - miRNApath = derive2 { name="miRNApath"; version="1.30.0"; sha256="0syi2kc6m9zhqaxhzj9h9micnracjj3yfgs8r5zlhs9hdp14jspi"; depends=[]; }; - miRNAtap = derive2 { name="miRNAtap"; version="1.4.0"; sha256="04ag91k3xa6gcmlgi2fr00p5247syn856n6jp3fhwhcn5pf5zd8y"; depends=[AnnotationDbi DBI plyr RSQLite sqldf stringr]; }; - miRcomp = derive2 { name="miRcomp"; version="1.0.0"; sha256="1a0h7qx7b4ccry5xmgh6fwqandi9lhgnlf0gk1zj6dy9zbkiwhvl"; depends=[Biobase miRcompData]; }; - microRNA = derive2 { name="microRNA"; version="1.28.0"; sha256="14l7fjvapswyk8y690xll3w1yalwl5sqqh8v8xp5xy9qvb3qgiiz"; depends=[Biostrings]; }; - minet = derive2 { name="minet"; version="3.28.0"; sha256="16hddd2agqldpfjc4bxa1wm58pczni8b4d8kc09bx2dk5rr4bcg7"; depends=[infotheo]; }; - minfi = derive2 { name="minfi"; version="1.16.1"; sha256="0ddqkbgxrfiijz5xzjb566xwvzrwljjhfhylqzhmz8fnrvqydid8"; depends=[beanplot Biobase BiocGenerics Biostrings bumphunter genefilter GenomeInfoDb GenomicRanges GEOquery illuminaio IRanges lattice limma MASS matrixStats mclust mixOmics nlme nor1mix preprocessCore quadprog RColorBrewer reshape S4Vectors siggenes SummarizedExperiment]; }; - mirIntegrator = derive2 { name="mirIntegrator"; version="1.0.0"; sha256="004cy2l4li55nd8n4facfk30ndhm1vdxkdsk4zywg14hmn95ldgv"; depends=[AnnotationDbi ggplot2 graph org_Hs_eg_db Rgraphviz ROntoTools]; }; - missMethyl = derive2 { name="missMethyl"; version="1.4.0"; sha256="1hbh99ix20909f4mpc3czh8jyj970gi4bj04fcvra6fd8n40w1b4"; depends=[IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest limma methylumi minfi org_Hs_eg_db ruv statmod stringr]; }; - mitoODE = derive2 { name="mitoODE"; version="1.8.0"; sha256="1rbxppzwmlrfyzcsa5b0biqm79qyv9662dh16zzp3frz56325kzy"; depends=[KernSmooth MASS minpack_lm mitoODEdata]; }; - mmnet = derive2 { name="mmnet"; version="1.8.1"; sha256="0ppcy11xnn593xig8gwz79vsbkdi3f5aai58zdhr59w52y2dafia"; depends=[Biobase biom flexmix ggplot2 igraph KEGGREST Matrix plyr RCurl reshape2 RJSONIO stringr XML]; }; - mogsa = derive2 { name="mogsa"; version="1.2.1"; sha256="07jm5avdhan9mn0pdaq6vhxx7xaibs0sylnc3hfpns84d8rsf65b"; depends=[Biobase BiocGenerics cluster corpcor genefilter gplots graphite GSEABase svd]; }; - monocle = derive2 { name="monocle"; version="1.4.0"; sha256="1g1f5a433pq0zdjc9ymgbpdbxvixqjlkdm10vqs6gf4r511a3k76"; depends=[Biobase BiocGenerics cluster combinat fastICA ggplot2 HSMMSingleCell igraph irlba limma matrixStats plyr reshape2 VGAM]; }; - mosaics = derive2 { name="mosaics"; version="2.4.0"; sha256="13vl1grn08qy64971wimmc1j117l7fzxpcwnvaz0j5020m5m8qq7"; depends=[IRanges lattice MASS Rcpp]; }; - motifRG = derive2 { name="motifRG"; version="1.14.0"; sha256="1v9zm5629k2lcqbbgw8bwflvbircyxkfavbkvmbd212kgwcng8vn"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 IRanges seqLogo XVector]; }; - motifStack = derive2 { name="motifStack"; version="1.14.0"; sha256="13s1y5xzkaapd53i33f8vdkdl5r4b8jzdyqrydanx35sgwn7fj1c"; depends=[ade4 Biostrings grImport MotIV scales XML]; }; - motifbreakR = derive2 { name="motifbreakR"; version="1.0.4"; sha256="1mwa070iqvq6qc0igvy5aivnqbipai1grccf1vz80al44pfx1w2v"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges grImport Gviz IRanges matrixStats MotifDb motifStack rtracklayer S4Vectors stringr TFMPvalue VariantAnnotation]; }; - msa = derive2 { name="msa"; version="1.2.1"; sha256="0lj5x3zh5vp6j9s3h77iq0awy9v5n453hbqf3k8pasj6l5x0dmyj"; depends=[BiocGenerics Biostrings IRanges Rcpp S4Vectors]; }; - msmsEDA = derive2 { name="msmsEDA"; version="1.8.0"; sha256="0y9k03mpq5i6sa8dngadgcxi02ggka7n1rz54mll012gs6fzvyra"; depends=[gplots MASS MSnbase RColorBrewer]; }; - msmsTests = derive2 { name="msmsTests"; version="1.8.0"; sha256="1qkg7rhvfgpkq8v1avwffqc2v6afijwzw1myd17llmj6z8iyhy6j"; depends=[edgeR msmsEDA MSnbase qvalue]; }; - multiscan = derive2 { name="multiscan"; version="1.30.0"; sha256="0nl1pjg1x1rdfhn09c9nk96swsw3gph7bnd1lfj87024b4w1r50p"; depends=[Biobase]; }; - multtest = derive2 { name="multtest"; version="2.26.0"; sha256="1gpq2adj177fn8xf7gpiiq8khmcln90xif413j1fzpwjmjpzpb1v"; depends=[Biobase BiocGenerics MASS survival]; }; - muscle = derive2 { name="muscle"; version="3.12.0"; sha256="1bcyi2n1mpnp7b54lxj8g03rbjrawyr3isn211rb5m7r8jzpdvyw"; depends=[Biostrings]; }; - mvGST = derive2 { name="mvGST"; version="1.4.0"; sha256="1yi8558lkqfrmxgighb5v8q12gwqlbs2ds610fgf8ggrdn84bzq8"; depends=[annotate AnnotationDbi GO_db GOstats gProfileR graph Rgraphviz stringr topGO]; }; - mygene = derive2 { name="mygene"; version="1.6.0"; sha256="0przfr6y9svkj9dbih43hpi69wzs07r15q7w233pnmm2qhxylkf4"; depends=[GenomicFeatures Hmisc httr jsonlite plyr S4Vectors sqldf]; }; - myvariant = derive2 { name="myvariant"; version="1.0.1"; sha256="1xby50zw1250nvqbki1xccjcri8qz286mdzrm3fzfv63i8g4xwjq"; depends=[GenomeInfoDb Hmisc httr jsonlite magrittr plyr S4Vectors VariantAnnotation]; }; - mzID = derive2 { name="mzID"; version="1.8.0"; sha256="1250kd8lrl4hnh8mvbl5hqbcszg3nynssdvjmy12wf0y0r9gjm8x"; depends=[doParallel foreach iterators plyr ProtGenerics XML]; }; - mzR = derive2 { name="mzR"; version="2.4.1"; sha256="189dsr69p0yxqm9lwhqxd9i24f45hqywp8ncx535znv2dhs8v1rw"; depends=[Biobase BiocGenerics ProtGenerics Rcpp zlibbioc]; }; - ncdfFlow = derive2 { name="ncdfFlow"; version="2.16.1"; sha256="0r968wix53rwwqx60gl04a46c1pwfydi80gixbx147zv8lxmc5cx"; depends=[BH Biobase flowCore flowViz Rcpp RcppArmadillo zlibbioc]; }; - neaGUI = derive2 { name="neaGUI"; version="1.8.0"; sha256="1xms5k8zzbk31sj0f92rsqjv40vcqy89pmy8z3j0336iascqbx9l"; depends=[hwriter]; }; - nem = derive2 { name="nem"; version="2.44.0"; sha256="1bkq622jyrfn0v4wyw5ycxmri8kyils4wznsz26ki3awff34lq3h"; depends=[boot e1071 graph limma plotrix RBGL RColorBrewer Rgraphviz statmod]; }; - netbenchmark = derive2 { name="netbenchmark"; version="1.2.0"; sha256="10s8xsisjp9sj9dl67bgn94ipm6a6kpqli3pvjdpxkmvjkg400kg"; depends=[c3net corpcor fdrtool GeneNet grndata Matrix minet PCIT pracma randomForest Rcpp]; }; - netbiov = derive2 { name="netbiov"; version="1.4.0"; sha256="1h3986kfi516xlw675cq901ls9v7rj5rr0ls5lny21wd439n2avf"; depends=[igraph]; }; - nethet = derive2 { name="nethet"; version="1.2.0"; sha256="1p214bgjccigsvqcr0kv0ckv00zvkkpk2pfh9xvcb4kp6biqs94j"; depends=[CompQuadForm GeneNet ggm ggplot2 glasso glmnet GSA huge ICSNP limma mclust multtest mvtnorm network parcor]; }; - netresponse = derive2 { name="netresponse"; version="1.20.15"; sha256="1mh3b5gjyh6nqif9qc45yy703vi4a4hi0szl6y6aazxd6fjqy98s"; depends=[dmt ggplot2 graph igraph mclust minet plyr qvalue RColorBrewer reshape2 Rgraphviz]; }; - networkBMA = derive2 { name="networkBMA"; version="1.12.0"; sha256="0zkf10iqiabsln1jxq0sypr43mrw6k82l3pdp5bg9kcv0bqqqy5k"; depends=[BMA Rcpp RcppArmadillo RcppEigen]; }; - nnNorm = derive2 { name="nnNorm"; version="2.34.0"; sha256="1wb85z0r0rwgaf1yzzlj1pcbgclz2isz9whxsify9jx8gfqflanh"; depends=[marray nnet]; }; - nondetects = derive2 { name="nondetects"; version="2.0.0"; sha256="0cyp7f90w9vcgwkg0mxrrpv28wihsgbynhq5kjk5hng9qfqjcyxg"; depends=[Biobase HTqPCR limma mvtnorm]; }; - npGSEA = derive2 { name="npGSEA"; version="1.6.0"; sha256="1vd02qwqv5rdkixi5ncqsxxy7zvr8qi4d6cms11fzwcmhisi1s4c"; depends=[Biobase BiocGenerics GSEABase]; }; - nucleR = derive2 { name="nucleR"; version="2.2.0"; sha256="0zhflv4nkn9dc2bdl81j9mjww6nh1mj6ffffy9cywvxzgpp2lc50"; depends=[Biobase BiocGenerics GenomicRanges IRanges Rsamtools S4Vectors ShortRead]; }; - nudge = derive2 { name="nudge"; version="1.36.0"; sha256="1px6hnda7hp7yx9imkl8xq8m772csd2qic0kq5bqwshk5qdvfhw7"; depends=[]; }; - occugene = derive2 { name="occugene"; version="1.30.0"; sha256="0p6pk7v75b4pbyxs1pglbsfprk4yi854d8aw41a1lwbmaphx5yyc"; depends=[]; }; - oligo = derive2 { name="oligo"; version="1.34.2"; sha256="0cv0vl8cj9n3la6n55qqlncyaxv072n6sdx8gp65prm6myp3ycgw"; depends=[affxparser affyio Biobase BiocGenerics Biostrings DBI ff oligoClasses preprocessCore RSQLite zlibbioc]; }; - oligoClasses = derive2 { name="oligoClasses"; version="1.32.0"; sha256="0gm4z4pa1hyrd9bdzncmkfhfywp3622wnyvhayhw7h17dw4gw94j"; depends=[affyio Biobase BiocGenerics BiocInstaller Biostrings ff foreach GenomicRanges IRanges RSQLite S4Vectors SummarizedExperiment]; }; - omicade4 = derive2 { name="omicade4"; version="1.10.0"; sha256="1ay1jm0r8qyr9271l1aqnvm800pagd3j21m37qlv6xfjvv4j6w5f"; depends=[ade4 made4]; }; - oneChannelGUI = derive2 { name="oneChannelGUI"; version="1.36.0"; sha256="0r5y531y4niy9gh64n7nk8a0xcj8lyg36axhcjx116ycsqa00x5h"; depends=[affylmGUI Biobase Biostrings chimera IRanges Rsamtools siggenes tkrplot tkWidgets]; }; - ontoCAT = derive2 { name="ontoCAT"; version="1.22.0"; sha256="03vy4210m31jzhhhbhw3ixhm1lji4qil2zp0ckmyh3xb8m8s8fzl"; depends=[rJava]; }; - openCyto = derive2 { name="openCyto"; version="1.8.4"; sha256="1g23qia1ah2rjvz6clc9jfpb1sql2g1298bd8lard293ryvwpnhv"; depends=[Biobase clue data_table flowClust flowCore flowStats flowViz flowWorkspace graph gtools ks lattice MASS ncdfFlow plyr R_utils RBGL RColorBrewer Rcpp rrcov]; }; - oposSOM = derive2 { name="oposSOM"; version="1.6.0"; sha256="0wdh40477hn2875j0q4nj0l0h210jym4j642lkjlx8zvdx9jra29"; depends=[ape Biobase biomaRt fastICA fdrtool igraph KernSmooth pixmap scatterplot3d som]; }; - pRoloc = derive2 { name="pRoloc"; version="1.10.1"; sha256="1k9249g46gf6ar3q44zrg8v1lqxl81rljmn0c107rxck0rvdwaxn"; depends=[Biobase BiocGenerics BiocParallel biomaRt caret class e1071 FNN ggplot2 gtools kernlab knitr lattice MASS mclust MLInterfaces MSnbase mvtnorm nnet plyr proxy randomForest RColorBrewer Rcpp RcppArmadillo sampling scales]; }; - pRolocGUI = derive2 { name="pRolocGUI"; version="1.4.1"; sha256="14wmmhrdm5fgw8smxgdadd49ggaqnnqw7p65xn0kkj6yk87h3xrx"; depends=[DT MSnbase pRoloc pRolocdata scales shiny]; }; - paircompviz = derive2 { name="paircompviz"; version="1.8.0"; sha256="0q5saqpyfjx37d6l6vqfiws8n4axarfvb1qr010a3davhdz4kzn8"; depends=[Rgraphviz]; }; - pandaR = derive2 { name="pandaR"; version="1.2.0"; sha256="00wkzhkghzy04pg5qxgd2gmcmqgri20vgw8m08yfdymb918zgvyk"; depends=[igraph matrixStats]; }; - panp = derive2 { name="panp"; version="1.40.0"; sha256="0fmi5j7xr2720548k36njjk4ad4szma3zbqig4ghd1x2gg94wh7n"; depends=[affy Biobase]; }; - parglms = derive2 { name="parglms"; version="1.2.0"; sha256="1n1q838gv45daji04a0m0wc92a3xwhgf4asl7wbirk198ra3q7pj"; depends=[BatchJobs BiocGenerics doParallel foreach]; }; - parody = derive2 { name="parody"; version="1.28.0"; sha256="1srs2qyp7lwq9w19izszg3n9q0mlj634zlksb796v7608yp0y643"; depends=[]; }; - pathRender = derive2 { name="pathRender"; version="1.38.0"; sha256="0bc9xy1hka79bq0zw1faalsl89aibf7d77i7gv9jnmh66li9g1pa"; depends=[AnnotationDbi cMAP graph RColorBrewer Rgraphviz]; }; - pathVar = derive2 { name="pathVar"; version="1.0.1"; sha256="1ixraifr8d86m9rdg38d6kfzmgghjxasgi3abb1i8knjyfwrc05v"; depends=[data_table EMT ggplot2 gridExtra Matching mclust]; }; - pathifier = derive2 { name="pathifier"; version="1.8.0"; sha256="08ipv1xcmxdb9g8h4dh4c7icwfp4myd9gwacb3cbl48libl459wj"; depends=[princurve R_oo]; }; - pathview = derive2 { name="pathview"; version="1.10.1"; sha256="0mpr9fqfp3ar927m6rvghn6ggbxp2ll2a9jfrz9ic44mbwpa1lb1"; depends=[AnnotationDbi graph KEGGgraph KEGGREST org_Hs_eg_db png Rgraphviz XML]; }; - paxtoolsr = derive2 { name="paxtoolsr"; version="1.4.6"; sha256="170gm5qxlsz2dv249q16shpj0xm9y7rp3rpn9ij6r2c5d3xn8i21"; depends=[data_table httr igraph plyr R_utils rJava rjson XML]; }; - pcaGoPromoter = derive2 { name="pcaGoPromoter"; version="1.14.0"; sha256="1w0cpakxlm8dx6z3j844xmkz3dawiaschrjcjlkqjv9ay8vfkhz8"; depends=[AnnotationDbi Biostrings ellipse]; }; - pcaMethods = derive2 { name="pcaMethods"; version="1.60.0"; sha256="090bgl178zxj89d0kshwl5jkz8qszgdbwrfdbbawg8ka48bilw2l"; depends=[Biobase BiocGenerics MASS Rcpp]; }; - pcot2 = derive2 { name="pcot2"; version="1.38.0"; sha256="1ycsbry5srf1msq4vcvv0q34lgzkwadh7k1pgwv963i567i4lx3b"; depends=[amap Biobase]; }; - pdInfoBuilder = derive2 { name="pdInfoBuilder"; version="1.34.1"; sha256="0dp1723hfkx0pc76b5xglqkxgvsh2iqqmx3sy9kyv7qcqgida14r"; depends=[affxparser Biobase BiocGenerics Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pdmclass = derive2 { name="pdmclass"; version="1.42.0"; sha256="1f4zrxbyk49hm0cxp0g1786cwc7g1k5z6v3hn2z66m7rbapz8afy"; depends=[Biobase fibroEset mda]; }; - pepStat = derive2 { name="pepStat"; version="1.4.0"; sha256="0ys8nq2f5ajir4k8gdm02p26vzbhhk88ys8zc7zsqim3v4pxgdis"; depends=[Biobase data_table fields GenomicRanges ggplot2 IRanges limma plyr]; }; - pepXMLTab = derive2 { name="pepXMLTab"; version="1.4.0"; sha256="1fgq8x6c3lml12a92ihrkkvaph1xh90i01h15k42aadh3725a5nw"; depends=[XML]; }; - phenoDist = derive2 { name="phenoDist"; version="1.18.0"; sha256="0kjsdgvr5kmrnn7mjzphk5r6irgjv5cfgmrd4yddprbmmln39avn"; depends=[e1071 imageHTS]; }; - phenoTest = derive2 { name="phenoTest"; version="1.18.0"; sha256="1lgxacph4mv0z8c17lx4f82nvq151ggsfv5f9p35aw9z1pc10pwg"; depends=[annotate AnnotationDbi Biobase biomaRt BMA Category ellipse genefilter ggplot2 gplots GSEABase Heatplus hgu133a_db Hmisc hopach HTSanalyzeR limma mgcv SNPchip survival xtable]; }; - phyloseq = derive2 { name="phyloseq"; version="1.14.0"; sha256="0h34ac577d2lzh6rzbvwz04ngp3v4c728z0nzf646ab10nfk1i17"; depends=[ade4 ape Biobase BiocGenerics biom Biostrings cluster data_table foreach ggplot2 igraph multtest plyr reshape2 scales vegan]; }; - piano = derive2 { name="piano"; version="1.10.2"; sha256="01ql6x020ai8aj6x89bsxixvv4q4fxsnyv87kxaw4p1hxcxqvybp"; depends=[Biobase BiocGenerics gplots igraph marray relations]; }; - pickgene = derive2 { name="pickgene"; version="1.42.0"; sha256="1awm471s2mx4w7m2p2bdz67rbgyz0khsa85bbrjcb4lbvljqwdv7"; depends=[MASS]; }; - pint = derive2 { name="pint"; version="1.20.0"; sha256="19q21b3zdn4adx49zn88z69xz3mqza58xdhig3zicn9s0g21bfz4"; depends=[dmt Matrix mvtnorm]; }; - pkgDepTools = derive2 { name="pkgDepTools"; version="1.36.0"; sha256="1v2fsax49wklwdmgxp9pjyp18cbj2rsg7yd68mwr2amlihgvmsp1"; depends=[graph RBGL]; }; - plateCore = derive2 { name="plateCore"; version="1.28.0"; sha256="1v7shvjnav930grswbixj8fyabmamsgry5g5is3sf9ymp9r8gh5x"; depends=[Biobase flowCore flowStats flowViz lattice latticeExtra MASS robustbase]; }; - plethy = derive2 { name="plethy"; version="1.8.0"; sha256="1skaqws1yb8n8li4daprq4x8vrbyykm3fk6pzwx7iyr3nf2r2zz5"; depends=[Biobase BiocGenerics DBI ggplot2 IRanges plyr RColorBrewer reshape2 RSQLite S4Vectors Streamer]; }; - plgem = derive2 { name="plgem"; version="1.42.0"; sha256="0nbiv4zbfiwa9mkpa2ldhnj3bi5nyrqcrzx1b54fcxsndrj9106i"; depends=[Biobase MASS]; }; - plier = derive2 { name="plier"; version="1.40.0"; sha256="0jlrxv79yg9w8yqlqqmswcrpk0ddw811qg142vbpd1alib35wrxi"; depends=[affy Biobase]; }; - plrs = derive2 { name="plrs"; version="1.10.0"; sha256="1f2dlgcbpfrn5za2z7nf1y8jzrcb5hzb3gix18nyqmz9syg57zha"; depends=[Biobase BiocGenerics CGHbase ic_infer marray quadprog Rcsdp]; }; - plw = derive2 { name="plw"; version="1.30.0"; sha256="190bccvxhdgp3ah9vzdpjddb33ck38r5x4gw1f8vwxh0mw79vf9c"; depends=[affy MASS]; }; - pmm = derive2 { name="pmm"; version="1.2.0"; sha256="1rsyh05w32gk2sip9hx1q93hwqwb1kmns47aq8qj2dw26ii0is3c"; depends=[lme4]; }; - podkat = derive2 { name="podkat"; version="1.2.0"; sha256="168piyx6c6vif771adm4594h6dq2h14g3jfk8lj2fvvdwyms2dn8"; depends=[Biobase BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp Rsamtools]; }; - polyester = derive2 { name="polyester"; version="1.6.0"; sha256="0if2rbgbfc3ghz5mnmpmpv6rq63qjm3l16gmlr493vfrpxdzclnv"; depends=[Biostrings IRanges limma logspline S4Vectors]; }; - ppiStats = derive2 { name="ppiStats"; version="1.36.0"; sha256="1s5xv565w924g71qaxgmhfszrkqs3arzi8l0vzcz446r2pgm6d32"; depends=[Biobase Category graph lattice ppiData RColorBrewer ScISI]; }; - prada = derive2 { name="prada"; version="1.46.0"; sha256="0ak21586bbkbpwji1pcbr44dlwyhslscrqm2y172310xbxm0sqbg"; depends=[Biobase BiocGenerics MASS RColorBrewer rrcov]; }; - prebs = derive2 { name="prebs"; version="1.10.0"; sha256="06rbsza5gdv9k9hcaxx0k65p9w61kfxiw0p4ah23dqfx0mldh5nx"; depends=[affy Biobase GenomeInfoDb GenomicAlignments GenomicRanges IRanges RPA S4Vectors]; }; - predictionet = derive2 { name="predictionet"; version="1.16.0"; sha256="1q7nl11kvh2rl5rzb4qnq5ckdrdkna0arfnjmki35lr8hyh65id0"; depends=[catnet igraph MASS penalized RBGL]; }; - preprocessCore = derive2 { name="preprocessCore"; version="1.32.0"; sha256="07isghjkqm91rg37l1fzpjrbq36b7w4pbsi95wwh6a8qq7r69z1n"; depends=[]; }; - proBAMr = derive2 { name="proBAMr"; version="1.4.1"; sha256="1lk3jq113hpx315kmq0s9ll1m7x1s91gwdzm3db06509wp5ki881"; depends=[AnnotationDbi Biostrings GenomicFeatures GenomicRanges IRanges rtracklayer]; }; - procoil = derive2 { name="procoil"; version="1.20.0"; sha256="11ss88jfk1j2b29l43qlvrlmhgxlfv1dw8wd9sqy3z3figspr3wz"; depends=[]; }; - prot2D = derive2 { name="prot2D"; version="1.8.0"; sha256="0pmsl550wvxnqx5zbj8b6lhvlb2bcmvi3xxx66x8r1sz3cdy3l7h"; depends=[Biobase fdrtool impute limma MASS Mulcom qvalue samr st]; }; - proteinProfiles = derive2 { name="proteinProfiles"; version="1.10.0"; sha256="0hkimlq3v8hq3khinydm4m8v5fgld74vc6yg9yzhz71hv1yy2i2m"; depends=[]; }; - proteoQC = derive2 { name="proteoQC"; version="1.6.0"; sha256="15raykmw19k4yn4jppw4lqwgarr8b7sfsvhcif49xvw7k1dwj5ys"; depends=[ggplot2 MSnbase Nozzle_R1 plyr Rcpp reshape2 rTANDEM seqinr VennDiagram XML]; }; - puma = derive2 { name="puma"; version="3.12.0"; sha256="0in135rhfy5dx8q205rrcid63g5q6xh6w7rimz6a1brn89dviaba"; depends=[affy affyio Biobase mclust oligo oligoClasses]; }; - pvac = derive2 { name="pvac"; version="1.18.0"; sha256="1m4iqss2v7llyb2c6dsgajavxj9wf5d51k6l07qhqd25znrvml2l"; depends=[affy Biobase]; }; - pvca = derive2 { name="pvca"; version="1.10.0"; sha256="1lvd5l2lcw84hcmzzwgbii87s9xd6cvqxzbc78393jhmgi8aapk0"; depends=[Biobase lme4 Matrix vsn]; }; - pwOmics = derive2 { name="pwOmics"; version="1.2.0"; sha256="0vlr71mhch716xl2i0366pxjkawci0g2imvfhsqinv5gd92m6hpq"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics biomaRt data_table GenomicRanges gplots igraph rBiopaxParser STRINGdb]; }; - qcmetrics = derive2 { name="qcmetrics"; version="1.8.0"; sha256="0y5bi4162b93d02ksg1hpqlfx4inl6bmal84lhrrzra5k6zzv72m"; depends=[Biobase knitr Nozzle_R1 pander S4Vectors xtable]; }; - qpcrNorm = derive2 { name="qpcrNorm"; version="1.28.0"; sha256="0ywh6iq1bywcyw5v6iax1ngigii3s7d0f6gfj2xk9qwfxpavzjjf"; depends=[affy Biobase limma]; }; - qpgraph = derive2 { name="qpgraph"; version="2.4.2"; sha256="0np8d7rw182zncyxcvn0sq0linl7aqy1aw2yysb5w29g8cgd8m82"; depends=[annotate AnnotationDbi Biobase BiocParallel GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges Matrix mvtnorm qtl Rgraphviz S4Vectors]; }; - qrqc = derive2 { name="qrqc"; version="1.24.0"; sha256="0850frx6fg9py2laav0yqavl9ckbn6y475xm9r6gxvyzp63smzdg"; depends=[Biostrings biovizBase brew ggplot2 plyr reshape Rsamtools testthat xtable]; }; - quantro = derive2 { name="quantro"; version="1.4.0"; sha256="1vkm12h5b85h0db2sxv3c8hhxmgpdycllxr6d9zv2y4an1zhjkn5"; depends=[Biobase doParallel foreach ggplot2 iterators minfi RColorBrewer]; }; - quantsmooth = derive2 { name="quantsmooth"; version="1.36.0"; sha256="0gfqvx6djy0sl0dz1la19wzc6nfbazrw28wrpf1b934gfbjii25d"; depends=[quantreg]; }; - qusage = derive2 { name="qusage"; version="2.2.2"; sha256="1pc9n8nfxgdc5xw3jhpvv05yijwwk2f9i7ssjxwgnc8mczrzv8b9"; depends=[Biobase limma lsmeans nlme]; }; - qvalue = derive2 { name="qvalue"; version="2.2.2"; sha256="0zfip08aacy80cc6xx04789k46nghzdxj8dbsgixvvhwhg2vxy1n"; depends=[ggplot2 reshape2]; }; - r3Cseq = derive2 { name="r3Cseq"; version="1.16.0"; sha256="0zjxqmj1lblxcl73cisacjacdmw9aj4wvr5lxdn9b4kq6rcr7ljn"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges IRanges qvalue RColorBrewer Rsamtools rtracklayer sqldf VGAM]; }; - rBiopaxParser = derive2 { name="rBiopaxParser"; version="2.8.0"; sha256="1akmgiqgi53d1264mmhkizn0g1fvjvqdgzsrw9yx26xi9ysmq9kg"; depends=[data_table XML]; }; - rCGH = derive2 { name="rCGH"; version="1.0.2"; sha256="07mbhgyjjmlyv0237gccd04hjxf22qw7nx5g71ijxj4mb22igign"; depends=[aCGH affy AnnotationDbi DNAcopy GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges lattice limma mclust org_Hs_eg_db plyr shiny TxDb_Hsapiens_UCSC_hg19_knownGene]; }; - rGADEM = derive2 { name="rGADEM"; version="2.18.0"; sha256="1aib9qqvbq9myyngxlmv494i7pr96k4p9rmrnc4drxa9zhh0pp5a"; depends=[Biostrings BSgenome IRanges seqLogo]; }; - rGREAT = derive2 { name="rGREAT"; version="1.2.0"; sha256="00gjlsgz3mac48qdpgxk0vvn5z454m2lcxm6lha8jby73pls9hh3"; depends=[GenomicRanges GetoptLong IRanges RCurl rjson]; }; - rHVDM = derive2 { name="rHVDM"; version="1.36.0"; sha256="0k1gccnac59q54y2nypzgip2srs5yg3v2hhrz86ps50p2lx4pqd2"; depends=[affy Biobase minpack_lm R2HTML]; }; - rMAT = derive2 { name="rMAT"; version="3.20.0"; sha256="0dq4ipz1j6qai8q8z038hjb5j0w67gp7449vj8psgca2854gxa7s"; depends=[affxparser Biobase BiocGenerics IRanges]; }; - rRDP = derive2 { name="rRDP"; version="1.4.0"; sha256="101g3j8r8h0nc69k0srlwkxld4qd99ww8xf5b34sm015hvhfx55k"; depends=[Biostrings]; }; - rSFFreader = derive2 { name="rSFFreader"; version="0.18.0"; sha256="0z2lkjbs3svx1b9zr4smjwrcd9xzxhfp98428vzaqq0k79h1v666"; depends=[Biostrings IRanges S4Vectors ShortRead XVector]; }; - rTANDEM = derive2 { name="rTANDEM"; version="1.10.0"; sha256="1dmaqdjfmjkkrddf666hpp95s7s6x0ssinx9aybl6952ylfjgcd1"; depends=[data_table Rcpp XML]; }; - rTRM = derive2 { name="rTRM"; version="1.8.1"; sha256="0hy2wxlclbgw48gizm6l2c65x81s17qh4l7751h00yw0995l4dsq"; depends=[AnnotationDbi DBI igraph RSQLite]; }; - rTRMui = derive2 { name="rTRMui"; version="1.8.0"; sha256="1mbljb86k3vhiavcv4fvibj6fykg65p4nh7wrrm1nxz90k5hbznp"; depends=[MotifDb org_Hs_eg_db org_Mm_eg_db rTRM shiny]; }; - rain = derive2 { name="rain"; version="1.4.0"; sha256="0nldnsy6x91nv3i24gj81yxmrr7d4j7iicqxy279gh1k5zh5l5r1"; depends=[gmp multtest]; }; - rama = derive2 { name="rama"; version="1.44.0"; sha256="0nka6a2dk7jn4lk0i2p91hxwdgpny6y3j4dz709crrxlz3xjqflm"; depends=[]; }; - randPack = derive2 { name="randPack"; version="1.16.0"; sha256="1i7rr4pid1yw5fjjlwcd0zy46z3c351vxqsj2z8mycl8cm29n8zn"; depends=[Biobase]; }; - rbsurv = derive2 { name="rbsurv"; version="2.28.0"; sha256="0pz7rza3j7yrdjp1q35y7xxhmkq9cvfg4ippgqqkny8qyayhy7bm"; depends=[Biobase survival]; }; - rcellminer = derive2 { name="rcellminer"; version="1.2.3"; sha256="1z91vk4bks47z2mypg8lg2qqxqwyggp7jykv7xl92msarqnz4izc"; depends=[Biobase fingerprint gplots rcdk rcellminerData shiny stringr]; }; - reb = derive2 { name="reb"; version="1.48.0"; sha256="1bxijf91vdr6088459r29kvy691bjbscy170pc0739iqbg7z80zm"; depends=[Biobase idiogram]; }; - regionReport = derive2 { name="regionReport"; version="1.4.1"; sha256="1sh6m6ly2r3lxvx6q6rb05ygd4c5ab7lzh4j6hpy5va3mg7prrgr"; depends=[bumphunter derfinder derfinderPlot devtools GenomeInfoDb GenomicRanges ggbio ggplot2 gridExtra IRanges knitcitations knitr knitrBootstrap mgcv RColorBrewer rmarkdown whisker]; }; - regioneR = derive2 { name="regioneR"; version="1.2.3"; sha256="0sf2j51ibmv38v19wg4anawwnini442hd30k7yvi3byqhs598jpn"; depends=[BSgenome GenomicRanges memoise rtracklayer]; }; - rfPred = derive2 { name="rfPred"; version="1.8.0"; sha256="09sc9y6pyw96piaqh33rzf94ryclknbhqig1fp36d3zabfj8a91i"; depends=[data_table GenomicRanges IRanges Rsamtools]; }; - rgsepd = derive2 { name="rgsepd"; version="1.2.0"; sha256="0djx0fm44fj6k8dq4ysqag93icnymm2b38asgplds8y6fv9gp39b"; depends=[AnnotationDbi biomaRt DESeq2 GenomicRanges GO_db goseq gplots hash org_Hs_eg_db]; }; - rhdf5 = derive2 { name="rhdf5"; version="2.14.0"; sha256="0cxg8w3244gcifvc27dm85wip776x5lnwkl7qhc7w92if57z7wcp"; depends=[zlibbioc]; }; - riboSeqR = derive2 { name="riboSeqR"; version="1.4.0"; sha256="1i9p9hxh2sipgpa1wf59pfs3h0qprr473axlvzw7f0yx171qimfg"; depends=[abind GenomicRanges]; }; - rnaSeqMap = derive2 { name="rnaSeqMap"; version="2.28.0"; sha256="0mfcy7l31g5z5yv12sv9imaf19p9vawnk7cqcm50x2sm032r8n7f"; depends=[Biobase DBI DESeq edgeR GenomicAlignments GenomicRanges IRanges Rsamtools]; }; - rnaseqcomp = derive2 { name="rnaseqcomp"; version="1.0.2"; sha256="0m22q75fyzwyxn6s58sjyzqyzp5rb808fvvck8vljnqghcflbybc"; depends=[RColorBrewer]; }; - roar = derive2 { name="roar"; version="1.6.1"; sha256="13730bs9k37brga57yy24m2q323i1676qlk7fnlg8c6hm151bq2q"; depends=[GenomicAlignments GenomicRanges rtracklayer S4Vectors SummarizedExperiment]; }; - rols = derive2 { name="rols"; version="1.12.2"; sha256="0bfgd346kxbb4wkhnhfpgkv33fm7p63pldvjj28sxal88g14n22r"; depends=[Biobase XML]; }; - ropls = derive2 { name="ropls"; version="1.2.14"; sha256="1b6k2c9i263m83jhvhcv65daa1gjyrra5hvmm9fm26h829g16y4l"; depends=[]; }; - rpx = derive2 { name="rpx"; version="1.6.0"; sha256="04kd9kn7k8fswpy03ccbaq6glwxiilvklyygj9gmi2sam06q9d6i"; depends=[RCurl XML]; }; - rqubic = derive2 { name="rqubic"; version="1.16.0"; sha256="0gasrkxpbvhxig6n3k3n9hdid9cg4gnkffyi9xn2zl33zm8wyirf"; depends=[biclust Biobase BiocGenerics]; }; - rsbml = derive2 { name="rsbml"; version="2.28.0"; sha256="0fzn7vpfsfb3k0j6mid0prrgdaqsv8b3945d0ynls8jgp02ma6hs"; depends=[BiocGenerics graph]; }; - rtracklayer = derive2 { name="rtracklayer"; version="1.30.3"; sha256="0b1zkan1qv07bhbwrgsggg2zscqvrngi3j072pqfj1804b308xv4"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicRanges IRanges RCurl Rsamtools S4Vectors XML XVector zlibbioc]; }; - sRAP = derive2 { name="sRAP"; version="1.10.0"; sha256="080s88l3a2fbgqnc8sy41kwzkm6skjazkirqini7n6xqcsqb9lih"; depends=[gplots pls qvalue ROCR WriteXLS]; }; - sSeq = derive2 { name="sSeq"; version="1.8.0"; sha256="1l05qm3576fx9v5bxvc0xm4916bzfvh1f4nnjdm67z82qxbx4wnz"; depends=[caTools RColorBrewer]; }; - safe = derive2 { name="safe"; version="3.10.0"; sha256="17ryzq2rc8hdmj1kzv62kzh1pn2nb454d73mdd5dk6qy0pgg4fan"; depends=[AnnotationDbi Biobase SparseM]; }; - sagenhaft = derive2 { name="sagenhaft"; version="1.40.0"; sha256="1y2fa861k9b9rb6hr0slvf5pgqwggssx7ppn1ddrh0yw53vk7dwy"; depends=[SparseM]; }; - sangerseqR = derive2 { name="sangerseqR"; version="1.6.0"; sha256="0jfh1jgvazi43bvj8m3546yh5vs0nhvnw7mmd68zndihm5agxhb1"; depends=[Biostrings shiny]; }; - sapFinder = derive2 { name="sapFinder"; version="1.8.0"; sha256="12a0wcjxcz77b06bymhqcj5wxzm478mlj9vcvbbqhdfvj7214hy9"; depends=[pheatmap Rcpp rTANDEM]; }; - saps = derive2 { name="saps"; version="2.2.0"; sha256="11v7nxlcnkslxl0giv3y2naxpfsmqmrj6b4y2g6zbp48zml45jgl"; depends=[piano reshape2 survcomp survival]; }; - savR = derive2 { name="savR"; version="1.8.0"; sha256="1vxxmzr8k6fn9fqr0pbfvccqq30d8w3fwjcr5x0bh1d77mzgf9n1"; depends=[ggplot2 gridExtra reshape2 scales XML]; }; - sbgr = derive2 { name="sbgr"; version="1.0.0"; sha256="0bvvxd0c4k4mmwkcb9w02i2kb6vwlq84w8vfqiamnwjy2vgjgka9"; depends=[httr jsonlite objectProperties]; }; - scsR = derive2 { name="scsR"; version="1.6.0"; sha256="0g1vgx8wrdwbhlzmf0a11fg5jnbkvz402h8qj48vj4bq8j202bc1"; depends=[BiocGenerics Biostrings ggplot2 hash IRanges plyr RColorBrewer sqldf STRINGdb]; }; - segmentSeq = derive2 { name="segmentSeq"; version="2.4.0"; sha256="0dbw8kssi2l6mnvjh7skbxc0akyha2wpa0r6ixw73p4g5qbaqafn"; depends=[baySeq GenomicRanges IRanges S4Vectors ShortRead]; }; - seq2pathway = derive2 { name="seq2pathway"; version="1.2.0"; sha256="1xki7wsydgagsh3fx9gwdd2asrbm6q9gnh27bv2cyrmjpp0nkjg1"; depends=[biomaRt GenomicRanges GSA nnet seq2pathway_data WGCNA]; }; - seqCNA = derive2 { name="seqCNA"; version="1.16.0"; sha256="1wq92wszv0x99l52lm3k0zc2ffin1sp78xlyfabxpwi1v0yrkifl"; depends=[adehabitatLT doSNOW GLAD seqCNA_annot]; }; - seqLogo = derive2 { name="seqLogo"; version="1.36.0"; sha256="0kn1a1nf2j4v9c09vjkz9bmxlln7yhg87bnyrdsxy1m55x56rn5k"; depends=[]; }; - seqPattern = derive2 { name="seqPattern"; version="1.2.0"; sha256="0p9zj6bic7sa0hb2bjm988kkk5n9r1kvlbqkzvy702f642n0j53i"; depends=[Biostrings GenomicRanges IRanges KernSmooth plotrix]; }; - seqTools = derive2 { name="seqTools"; version="1.4.1"; sha256="19hxakskh3qa9ypp2nmly3mrlbjfrq2ya5f5gyhg4mv0vahm9yc8"; depends=[zlibbioc]; }; - seqbias = derive2 { name="seqbias"; version="1.18.0"; sha256="1wwskcbl3wd8gl63jl4wl0xwzj8kbwbc8xhp12z3xximngkk7dgd"; depends=[Biostrings GenomicRanges Rsamtools zlibbioc]; }; - seqplots = derive2 { name="seqplots"; version="1.8.0"; sha256="1kk914pc462n37gmma6l1d0kcrw2qqgkd3sb67mrx053h1n0lz35"; depends=[Biostrings BSgenome Cairo class DBI digest DT fields GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges jsonlite kohonen plotrix RColorBrewer reshape2 RSQLite rtracklayer S4Vectors shiny]; }; - shinyMethyl = derive2 { name="shinyMethyl"; version="1.4.0"; sha256="1db4g2sgfgr21hh3xcpv8lcnmrqgwfrj97dlpi8blqcs81mrhc3s"; depends=[BiocGenerics IlluminaHumanMethylation450kmanifest matrixStats minfi RColorBrewer shiny]; }; - shinyTANDEM = derive2 { name="shinyTANDEM"; version="1.8.0"; sha256="0dkgwfynznpq2q55d83w4x0nmal3dkgzxi1jpdcsasqlhsyqvmvx"; depends=[mixtools rTANDEM shiny xtable]; }; - sigPathway = derive2 { name="sigPathway"; version="1.38.0"; sha256="126cyw88d6rxp3bzdqsmm2v0kvhn650qmi4zcs9v50n0hhwyrxrf"; depends=[]; }; - sigaR = derive2 { name="sigaR"; version="1.14.0"; sha256="07ip468liyg9b6q9izd1wdp29p9f2icfs01nf0il4gc76h6d0rr5"; depends=[Biobase CGHbase corpcor igraph marray MASS mvtnorm penalized quadprog snowfall]; }; - siggenes = derive2 { name="siggenes"; version="1.44.0"; sha256="18r1yqaq2ppa00vwgwdbla3sq4rcsr3d1jrjdbq0p17dan5f9dqz"; depends=[Biobase multtest]; }; - sigsquared = derive2 { name="sigsquared"; version="1.2.0"; sha256="1mgm84fdkzjp7hp3kp98l8g64mc3dg1cih2z9svmpcryp5fyxjvc"; depends=[Biobase survival]; }; - similaRpeak = derive2 { name="similaRpeak"; version="1.2.0"; sha256="024nr8imqp4vrrhfikn00kv9cx3sg1h862dmgvylbkmjmm4f2mr8"; depends=[GenomicAlignments R6 Rsamtools rtracklayer]; }; - simpleaffy = derive2 { name="simpleaffy"; version="2.46.0"; sha256="1x3f7hm7w44yarq4irv791330zfamhsqqwnqz8xfwrpvjrkv6avn"; depends=[affy Biobase BiocGenerics gcrma genefilter]; }; - simulatorZ = derive2 { name="simulatorZ"; version="1.4.0"; sha256="1sypvrwq6ay7lzmb9cmpix1zgzafzryvf4my5jky846bcpam91qj"; depends=[Biobase BiocGenerics CoxBoost gbm GenomicRanges Hmisc IRanges S4Vectors SummarizedExperiment survival]; }; - sincell = derive2 { name="sincell"; version="1.2.0"; sha256="1qmjy9cwhnyg4s3jfzi0z0yfdza4dma0q6h73772mhh2l4q149h7"; depends=[cluster entropy fastICA fields ggplot2 igraph MASS proxy Rcpp reshape2 Rtsne scatterplot3d statmod TSP]; }; - sizepower = derive2 { name="sizepower"; version="1.40.0"; sha256="0wl1fvldarg85gg4i6xmh2ssma2hdqddd3lp7x13r2322344gmxl"; depends=[]; }; - skewr = derive2 { name="skewr"; version="1.2.0"; sha256="0kmlgv1j104dnlbvg00jsbcdhr60l83dabfrzggvx7s9aspwgp30"; depends=[IlluminaHumanMethylation450kmanifest IRanges methylumi minfi mixsmsn RColorBrewer wateRmelon]; }; - snapCGH = derive2 { name="snapCGH"; version="1.40.0"; sha256="0fjqp0qhwk041pgwqp3av5ihkf4xb9li6zy6gmvk24hlj8sm600z"; depends=[aCGH cluster DNAcopy GLAD limma tilingArray]; }; - snm = derive2 { name="snm"; version="1.18.0"; sha256="150lwwk6cyhwjypb4f3gsmhpiv4vcayip7gpl2vxfmvhg03yqbyl"; depends=[corpcor lme4]; }; - snpStats = derive2 { name="snpStats"; version="1.20.0"; sha256="16j3qq9vqswgra5xkm1ykwzcf8gxy7f7xa0l0z08n36hv7d0zd6x"; depends=[BiocGenerics Matrix survival zlibbioc]; }; - soGGi = derive2 { name="soGGi"; version="1.2.1"; sha256="11ksx2z9vkz1d39fhds7cadwr0mzicis5nizj6qyzmzlybyc8v72"; depends=[BiocGenerics BiocParallel Biostrings chipseq GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges preprocessCore reshape2 Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; - spade = derive2 { name="spade"; version="1.18.2"; sha256="0m2784x2ysp4mc7m8n8scpr1h38m3p9glcc5jd6cix55bh3yzykk"; depends=[Biobase flowCore igraph Rclusterpp]; }; - specL = derive2 { name="specL"; version="1.4.0"; sha256="0i7j5bzvlsyy72xg2gcxggrz25ln3287gcd433mwyiira4apz1il"; depends=[DBI protViz Rcpp RSQLite seqinr]; }; - spikeLI = derive2 { name="spikeLI"; version="2.30.0"; sha256="0xqqwxhb89ngfr9jz3z3wsmq8l6lky4hcjnqvf9qd1cwjkf51am9"; depends=[]; }; - spkTools = derive2 { name="spkTools"; version="1.26.0"; sha256="0aznmn9si99x32kn2x5swhpahp96bsg71i1wizml0ni6lvmbxn0j"; depends=[Biobase gtools RColorBrewer]; }; - spliceR = derive2 { name="spliceR"; version="1.12.0"; sha256="0r5j0ibl2ccsxb7rr2fxw4b07wbdiyfndxkl4pgd9h0ks4qyhyjy"; depends=[cummeRbund GenomicRanges IRanges plyr RColorBrewer rtracklayer VennDiagram]; }; - spliceSites = derive2 { name="spliceSites"; version="1.8.3"; sha256="1jifh0nbqjhrc07jfc50hfk4wn1hv3a863rbr3fnqlg9rwg044w7"; depends=[Biobase BiocGenerics Biostrings doBy IRanges rbamtools refGenome seqLogo]; }; - splicegear = derive2 { name="splicegear"; version="1.42.0"; sha256="1g2fqql1wqzwz1vx5cq03ckld0gccqk6rv9l99xsaa8mhf0rn1qa"; depends=[annotate Biobase XML]; }; - splots = derive2 { name="splots"; version="1.36.0"; sha256="1cj8bygsv1g91cypdz2zbf2slirls7sqdxrvg6qka0n8las58sxd"; depends=[RColorBrewer]; }; - spotSegmentation = derive2 { name="spotSegmentation"; version="1.44.0"; sha256="074nzh18pj6dpk9bqh8id0j2vpaxvhi2ddrz6hnza381wzdgxdr3"; depends=[mclust]; }; - sscore = derive2 { name="sscore"; version="1.42.0"; sha256="0h86crb241vmaczp76wz4zv9ni1snmlkrdi1md3hgq1hqxnn9gzs"; depends=[affy affyio]; }; - ssize = derive2 { name="ssize"; version="1.44.0"; sha256="1aaafnj114j2zwf88y2133md6b33dsl88rg1zq0ql2xs4cxvsgkz"; depends=[gdata xtable]; }; - ssviz = derive2 { name="ssviz"; version="1.4.0"; sha256="0j4c5b2ivz6l6a3by9hgy59r9z4s854pgias6sabp4qzpqgc3655"; depends=[Biostrings ggplot2 RColorBrewer reshape Rsamtools]; }; - staRank = derive2 { name="staRank"; version="1.12.0"; sha256="1vgc3mhxyhrgwkapnqx4061l9l0nyc012508hma14xbxml3f76sg"; depends=[cellHTS2]; }; - stepNorm = derive2 { name="stepNorm"; version="1.42.0"; sha256="0kvpfiq6w1vksw6dqjx0kw46rrfafpfs9ii8bwp1kk3q84zmyrmm"; depends=[marray MASS]; }; - stepwiseCM = derive2 { name="stepwiseCM"; version="1.16.0"; sha256="1ss79yr75kw7fsd8ihpivj9k5v32zxr3ymkl6prba0nyxdj5wyz9"; depends=[Biobase e1071 glmpath MAclinical pamr penalized randomForest snowfall tspair]; }; - subSeq = derive2 { name="subSeq"; version="1.0.1"; sha256="1k7d3hdiqxdv3mn61gr9rxsqywh2xgj2l8r4806j8b05vyi1ybdk"; depends=[Biobase data_table digest dplyr ggplot2 magrittr qvalue tidyr]; }; - supraHex = derive2 { name="supraHex"; version="1.8.0"; sha256="1g2zcarzi805y2933pyjdgg7l9imbhdf4pjhyr8bir0149li98cy"; depends=[ape hexbin MASS]; }; - survcomp = derive2 { name="survcomp"; version="1.20.0"; sha256="174kh5cnbw1dg109wrzbf4xhslzn56fag4d3nxwswxinrdz360i9"; depends=[bootstrap ipred KernSmooth prodlim rmeta SuppDists survival survivalROC]; }; - sva = derive2 { name="sva"; version="3.18.0"; sha256="0jx4ar4nj8fgmrbhlaz6zm04zmcaacrakyzyy5hi2dgsy025c86c"; depends=[genefilter mgcv]; }; - switchBox = derive2 { name="switchBox"; version="1.4.0"; sha256="0lmrg3ahjmz7x3ngjmhkb2w6n2zv0lw40xq1f9lhiyzqzj23rri0"; depends=[]; }; - synapter = derive2 { name="synapter"; version="1.12.0"; sha256="0mrqbfg4kwwzm7g2sp1py715w52268kzlkhylqmr1cjqi20b0gb7"; depends=[Biobase BiocParallel Biostrings cleaver hwriter knitr lattice MSnbase multtest qvalue RColorBrewer]; }; - synlet = derive2 { name="synlet"; version="1.0.0"; sha256="05vxkzafgri9ppscv5ark65s15fn3g4lfnkv25ryfddflcfkl1n2"; depends=[doBy dplyr ggplot2 magrittr RankProd RColorBrewer reshape2]; }; - systemPipeR = derive2 { name="systemPipeR"; version="1.4.8"; sha256="09f41q8bnznmrfqwfjfd6h6p6xx20qg1l06dxjajbc0did1fblfz"; depends=[annotate BatchJobs BiocGenerics Biostrings DESeq2 edgeR GenomicFeatures GenomicRanges ggplot2 GO_db GOstats limma pheatmap rjson Rsamtools ShortRead SummarizedExperiment VariantAnnotation]; }; - tRanslatome = derive2 { name="tRanslatome"; version="1.8.0"; sha256="0kblzs5x5bh2bqg5bd5c33b405r33aicba0x0ky02vvqsld64f6l"; depends=[anota Biobase DESeq edgeR GOSemSim gplots Heatplus limma org_Hs_eg_db plotrix RankProd samr sigPathway topGO]; }; - ternarynet = derive2 { name="ternarynet"; version="1.14.0"; sha256="0c25xinnlvafwf1x08zmcm1agwflvs9jpckhq58dc5fs8jb4zi6y"; depends=[igraph]; }; - tigre = derive2 { name="tigre"; version="1.24.2"; sha256="0fk73fmqf7d2pb6m5l78rslxh211zzsl9g3snn4507rfxvivcz11"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI gplots RSQLite]; }; - tilingArray = derive2 { name="tilingArray"; version="1.48.0"; sha256="0ac78mqmjr8wv7zw6rk6q7bxwfmvycsmgybqg4xayja01qvmwkji"; depends=[affy Biobase genefilter pixmap RColorBrewer strucchange vsn]; }; - timecourse = derive2 { name="timecourse"; version="1.42.0"; sha256="01awyngw9qalsvagn1f51kdhkqfvscnfhlp50xndr3s2zmmra5xg"; depends=[Biobase limma marray MASS]; }; - tkWidgets = derive2 { name="tkWidgets"; version="1.48.0"; sha256="1a4j66pyhyns4mi5dfjqym4kd7dardhvhpr6r4ip34dc1b98hcg1"; depends=[DynDoc widgetTools]; }; - topGO = derive2 { name="topGO"; version="2.22.0"; sha256="029j9nb39b8l9xlzsp83pmjr8ap247aia387yzaa1yyw8klapdaf"; depends=[AnnotationDbi Biobase BiocGenerics GO_db graph lattice SparseM]; }; - trackViewer = derive2 { name="trackViewer"; version="1.6.1"; sha256="12n4rnph5viy0n45v6fl4b473dq71gqqz34hapnav13csy5nxc4i"; depends=[GenomicAlignments GenomicFeatures GenomicRanges Gviz IRanges pbapply Rsamtools rtracklayer scales]; }; - tracktables = derive2 { name="tracktables"; version="1.4.2"; sha256="1zb51wll7p9kw1q0wnir3gggqxr9p5mc30kk59vjl14apfpbx1vp"; depends=[GenomicRanges IRanges ore RColorBrewer Rsamtools stringr XML XVector]; }; - traseR = derive2 { name="traseR"; version="1.0.0"; sha256="03lqmnb2fann1fn42kr2k126ppgkb5rw7n25h908hmq200mfl122"; depends=[BSgenome_Hsapiens_UCSC_hg19 GenomicRanges IRanges]; }; - triform = derive2 { name="triform"; version="1.12.0"; sha256="0pqfz6msalr2264iwi2hzam2sv8yl4fy1ri72pff5gh14rbxgiml"; depends=[BiocGenerics IRanges yaml]; }; - trigger = derive2 { name="trigger"; version="1.16.0"; sha256="1lswb0zdxkc37xkpyp65md4bv81njl74y6cl3dp9ym5mf47l5azg"; depends=[corpcor qtl qvalue sva]; }; - trio = derive2 { name="trio"; version="3.8.0"; sha256="066401wayzl09p9g10j8vl9nhk57351ll1rf28c8ix4kh50pszi5"; depends=[]; }; - triplex = derive2 { name="triplex"; version="1.10.0"; sha256="1k9dr5bdrbqgxjs1dwha7xxaas3cfhpfi75pykq7hhmxip6bcsp5"; depends=[Biostrings GenomicRanges IRanges S4Vectors XVector]; }; - tspair = derive2 { name="tspair"; version="1.28.0"; sha256="0m083g5z77n7dd4lnbhvbwjkykh7a4pl4v8j7ipr5w7f9dhdjk33"; depends=[Biobase]; }; - tweeDEseq = derive2 { name="tweeDEseq"; version="1.16.0"; sha256="0dyhczzfbp99nd2ia78scyzw8d02hrwaqr1pqj1c038mm6vsldvb"; depends=[cqn edgeR limma MASS]; }; - twilight = derive2 { name="twilight"; version="1.46.0"; sha256="1v3aghnmx1g8kn1z98fx8k71gh2g9q1x52x3lhx70wkzcn6phphd"; depends=[Biobase]; }; - unifiedWMWqPCR = derive2 { name="unifiedWMWqPCR"; version="1.6.0"; sha256="0iiwaihywibrfkiayp9dciv9i5n1j13ildwhaxilrha2qdmmjxqm"; depends=[BiocGenerics HTqPCR]; }; - variancePartition = derive2 { name="variancePartition"; version="1.0.7"; sha256="10hdxhl4bm1ky5cjiafgbc63aalh75d6ii16gllw0kd4agp2xxfx"; depends=[Biobase dendextend doParallel foreach ggplot2 iterators limma lme4 reshape2]; }; - vbmp = derive2 { name="vbmp"; version="1.38.0"; sha256="075hp0bb66fjda8bzhgcmxjhlrncwfwqrzsm885ci928yrl4fyjw"; depends=[]; }; - viper = derive2 { name="viper"; version="1.6.1"; sha256="1jmddpbfwnhc9spblr38qljhrzzkc8r2l26h58b996wjrh0x75gh"; depends=[Biobase e1071 KernSmooth mixtools]; }; - vsn = derive2 { name="vsn"; version="3.38.0"; sha256="17l1wywbm99g4n08m6wasx59wfavjas0f03a87a1pdv8ff4i71ac"; depends=[affy Biobase ggplot2 hexbin lattice limma]; }; - vtpnet = derive2 { name="vtpnet"; version="0.10.0"; sha256="1qvg9f8qa64rpdqv575b7zadf4j1hs5ijhpjk4qjb8h7z5xprr7s"; depends=[doParallel foreach GenomicRanges graph gwascat]; }; - wateRmelon = derive2 { name="wateRmelon"; version="1.10.0"; sha256="1hcfxiiwk0f7i59aj7v55403m755cwfldwniif8x9kkr1xm2n8jh"; depends=[IlluminaHumanMethylation450kanno_ilmn12_hg19 limma lumi matrixStats methylumi ROC]; }; - wavClusteR = derive2 { name="wavClusteR"; version="2.4.1"; sha256="0j0cy5bi8pacc6bhy0prlv446m2kgxyjnd5r3vw2lxc1ygllxn6h"; depends=[Biostrings foreach GenomicFeatures GenomicRanges ggplot2 Hmisc IRanges mclust Rsamtools rtracklayer seqinr stringr wmtsa]; }; - waveTiling = derive2 { name="waveTiling"; version="1.12.0"; sha256="0j866mgxj44mv4wp0yqnav83w8pfb47lmjhp1y0qqvxc6q9k80g8"; depends=[affy Biobase Biostrings GenomeGraphs GenomicRanges IRanges oligo oligoClasses preprocessCore waveslim]; }; - weaver = derive2 { name="weaver"; version="1.36.0"; sha256="0ixs723mh9p1pq6za8xjqknbq1jq4ylcxsv08f40izmlp40mxjdx"; depends=[codetools digest]; }; - webbioc = derive2 { name="webbioc"; version="1.42.0"; sha256="1xli6q0d9y2wikqxk3cf2am3plfk5c27w95q607brs6kl3ghlafl"; depends=[affy annaffy Biobase BiocInstaller gcrma multtest qvalue vsn]; }; - widgetTools = derive2 { name="widgetTools"; version="1.48.0"; sha256="0gwx02bqpfppmk34vh5qfax9bid7854dbapgdnzz32xzhamk64a8"; depends=[]; }; - xcms = derive2 { name="xcms"; version="1.46.0"; sha256="0hhw86xkd3z7liyivj1ssdd7z8q1m91jplni8ags1sify46fh57p"; depends=[Biobase BiocGenerics lattice mzR ProtGenerics RColorBrewer]; }; - xmapbridge = derive2 { name="xmapbridge"; version="1.28.0"; sha256="0b7l9gr1qrjj8fg9mcb3xyaw3s3zk8k2d46l9bgsl6g0xz79j615"; depends=[]; }; - xps = derive2 { name="xps"; version="1.30.0"; sha256="0wh98fsj3j368bxk4wa7rjd3acwl04r1dfiy13a89zv1fzv3wvky"; depends=[]; }; - yaqcaffy = derive2 { name="yaqcaffy"; version="1.30.0"; sha256="1pj2ksqbj7dlc76s6qagi7iq35wa83gx5cp0hm42w3bj7mxprjbi"; depends=[simpleaffy]; }; - zlibbioc = derive2 { name="zlibbioc"; version="1.16.0"; sha256="01wc26ndg4jsn1wyrl6zzq636gxaip5fci0xapym4lh9wryc4wnw"; depends=[]; }; + interactiveDisplay = derive2 { name="interactiveDisplay"; version="1.10.2"; sha256="1rvqh3krhcmqk82ykhcpqm93xci5bsh0xg8dw45jb80ldfz00nrh"; depends=[AnnotationDbi BiocGenerics Category ggplot2 gridSVG interactiveDisplayBase plyr RColorBrewer reshape2 shiny XML]; }; + interactiveDisplayBase = derive2 { name="interactiveDisplayBase"; version="1.10.3"; sha256="0gn19dd8m8jc8cjkwy12m7g7mzbxpfg2lhw0pklhbb00nq1hykqa"; depends=[BiocGenerics shiny]; }; + inveRsion = derive2 { name="inveRsion"; version="1.20.0"; sha256="1sjrpcccnnk2jfiwxm1ly0mzj8h6z3dvv9r3sa2ph5k4v13rn3gn"; depends=[haplo_stats]; }; + iontree = derive2 { name="iontree"; version="1.18.0"; sha256="07j97v062sm1dv3bz7n5s7z5vimizkmv5g8ck4irvdjwm7my572a"; depends=[rJava RSQLite XML]; }; + isobar = derive2 { name="isobar"; version="1.18.0"; sha256="1zckdyaclbnmyhmzavlr350q1pqqwrl9s0cdplfr1bj6hjififc0"; depends=[Biobase distr plyr]; }; + isomiRs = derive2 { name="isomiRs"; version="1.0.3"; sha256="1kclz9kl3pvg2djm6kkxwg8nds33pryf7l27ilx51hcarci78gkq"; depends=[BiocGenerics DESeq2 DiscriMiner dplyr GenomicRanges GGally ggplot2 gplots IRanges plyr RColorBrewer S4Vectors SummarizedExperiment]; }; + iterativeBMA = derive2 { name="iterativeBMA"; version="1.30.0"; sha256="0x6sd1zdw5lr5r5fw3xig1466cch3snradcms8dl9y1dwnv7vr2v"; depends=[Biobase BMA leaps]; }; + iterativeBMAsurv = derive2 { name="iterativeBMAsurv"; version="1.30.0"; sha256="0vbvkqlj2facp4wfww650wm9m3czh33rj99d7mmi9h2qsvmbza21"; depends=[BMA leaps survival]; }; + jmosaics = derive2 { name="jmosaics"; version="1.11.0"; sha256="1wg8mqh72dqwzqyx0wr1y0wqqmy10qv7fx0ybb78fh76jdwrq4lw"; depends=[mosaics]; }; + joda = derive2 { name="joda"; version="1.20.0"; sha256="06lli20fxdvf9836xmg1dkf7f62khnd4lpz9c3xna9wqawcdk3wa"; depends=[bgmm RBGL]; }; + kebabs = derive2 { name="kebabs"; version="1.6.2"; sha256="1bc5qg23h0f648l2xpizvyagd6jwwhwj1hw5s70jkb42qfvgpyr5"; depends=[apcluster Biostrings e1071 IRanges kernlab LiblineaR Matrix Rcpp S4Vectors XVector]; }; + keggorthology = derive2 { name="keggorthology"; version="2.24.0"; sha256="0340gpvjpnk00iyn06bp0ad1cibp6b0kq4gk143mvkcvyk8vhk01"; depends=[AnnotationDbi DBI graph hgu95av2_db]; }; + kimod = derive2 { name="kimod"; version="1.0.0"; sha256="05g1kvdfnhb77iwnad85214lf2q6lmrsz29lgc95kwyn62r60fj8"; depends=[Biobase cluster]; }; + lapmix = derive2 { name="lapmix"; version="1.38.0"; sha256="1k4057cykcm1nzzp09yb31pl2w9ii047cc4iknndklp3827riyc0"; depends=[Biobase]; }; + ldblock = derive2 { name="ldblock"; version="1.2.2"; sha256="1rr01m9dgzg3lxnql0fvak89rnjwnlqxclq70wks1j6wr5ggyxqi"; depends=[Matrix snpStats]; }; + les = derive2 { name="les"; version="1.22.0"; sha256="17cxxbf5z2v5ada43lj6blb6c0wcfp8izvgyi58dv1rf8nmp77w7"; depends=[boot fdrtool gplots RColorBrewer]; }; + lfa = derive2 { name="lfa"; version="1.2.2"; sha256="1xqjj7q70qxx952yf28s2ry03mj4csbri21gi7rl5ixi0581ji3a"; depends=[corpcor]; }; + limma = derive2 { name="limma"; version="3.28.21"; sha256="1dvisifd2rr7s1rrsqj5vrv2qcg4la4yi2ajbn0zkk5z81ffxv9f"; depends=[]; }; + limmaGUI = derive2 { name="limmaGUI"; version="1.48.0"; sha256="0rr6202jp7qx2csbvqr6qcg8584v9msmiqgcm6r1wmrwggh7nksb"; depends=[AnnotationDbi BiocInstaller gcrma limma R2HTML tkrplot xtable]; }; + lmdme = derive2 { name="lmdme"; version="1.14.0"; sha256="1ng0ng1pxdrxpmmaqzg8dxl4wics06z9g28zfgpdzq1hacckspd4"; depends=[limma pls stemHypoxia]; }; + logicFS = derive2 { name="logicFS"; version="1.42.0"; sha256="0311x3miljdg9d1fw0x24il4c2i0d799z3si44vw7r6xxws11fzb"; depends=[LogicReg mcbiopi]; }; + logitT = derive2 { name="logitT"; version="1.30.0"; sha256="16fqyk0kkidz7as21zslii97mhzclmf7pd5bimvajv9hbx7m1284"; depends=[affy]; }; + lol = derive2 { name="lol"; version="1.20.0"; sha256="1vp25q5a1q9fzagy85lb0ab3iiapj4ilas5wkjxavh6bx6198z4w"; depends=[Matrix penalized]; }; + lpNet = derive2 { name="lpNet"; version="2.4.0"; sha256="02bq0fw0hq50y591ys85lk50hy2ad72izrvf7wds1x4c3sgcbhnm"; depends=[lpSolve nem]; }; + lpsymphony = derive2 { name="lpsymphony"; version="1.0.2"; sha256="1ckijz59g5sx8phwg28xv17iwlja6mdnffnzrwqg1f17kc423vzm"; depends=[]; }; + lumi = derive2 { name="lumi"; version="2.24.0"; sha256="1p8w6lfwlzcizc6517hb85ih8p9wzqklk2s7qsacsprfwh1h7wvq"; depends=[affy annotate AnnotationDbi Biobase DBI GenomicFeatures GenomicRanges KernSmooth lattice MASS methylumi mgcv nleqslv preprocessCore RSQLite]; }; + mAPKL = derive2 { name="mAPKL"; version="1.4.2"; sha256="089hsy6x144qrwqd555py8zlb7zka4yjf1qww0lx7kv131295wkf"; depends=[AnnotationDbi apcluster Biobase clusterSim e1071 igraph limma multtest parmigene reactome_db]; }; + mBPCR = derive2 { name="mBPCR"; version="1.26.0"; sha256="1c57c3dfaxdzalqnsfg9ac5kppn8hdajnxmy58rzma0509k9kjkd"; depends=[Biobase oligoClasses SNPchip]; }; + mQTL_NMR = derive2 { name="mQTL.NMR"; version="1.6.0"; sha256="1p2wk16db2g2ns6vvk7ms5s10n3xk37nbbpdgjrim9b1jxiv7mf3"; depends=[GenABEL MASS outliers qtl]; }; + maCorrPlot = derive2 { name="maCorrPlot"; version="1.42.0"; sha256="14i8q92jhp22r6mkb2813507q270z6jhpq1qvagaardvhvaqjqzj"; depends=[lattice]; }; + maPredictDSC = derive2 { name="maPredictDSC"; version="1.10.0"; sha256="0w3csffy6285d3y9lj8b7i59x5x4zkgwf2pl07y5vx7rdpjg9rfr"; depends=[affy AnnotationDbi caret class e1071 gcrma hgu133plus2_db limma LungCancerACvsSCCGEO MASS ROC ROCR]; }; + maSigPro = derive2 { name="maSigPro"; version="1.44.0"; sha256="05piq7h2zg8pgxd29xgk346ikbbam02fsg8i4k9q55i5bnx7ifmb"; depends=[Biobase limma MASS Mfuzz]; }; + maanova = derive2 { name="maanova"; version="1.42.0"; sha256="0kypia11sal5gmiykapzaly18qsrbv4qi22ilz5c1plrk65rz0li"; depends=[Biobase]; }; + macat = derive2 { name="macat"; version="1.46.0"; sha256="137g4wmdyzfyj45gjxla0caf0pp0gbns30v521j7awlxq8rsd6qh"; depends=[annotate Biobase]; }; + made4 = derive2 { name="made4"; version="1.46.0"; sha256="1wj7pfajhwhl6gbja4hr8jlzciighgzhhvy8553pkj4mnrv204r3"; depends=[ade4 gplots RColorBrewer scatterplot3d]; }; + maigesPack = derive2 { name="maigesPack"; version="1.36.0"; sha256="061bp7mqi1n0c1vcbnbmmpxbj2lvjvbcny4vh55klqw1r7wqjbm6"; depends=[convert graph limma marray]; }; + makecdfenv = derive2 { name="makecdfenv"; version="1.48.0"; sha256="0s065hgmrinrixxc813114cqi91n0s10ngkbm8r20q5jm3xfsiqd"; depends=[affy affyio Biobase zlibbioc]; }; + manta = derive2 { name="manta"; version="1.18.0"; sha256="0kqic6985zxz9hwcmyhc0px6ggdmshbsz4x3xyw9mc1q2d6svjdp"; depends=[caroline edgeR Hmisc]; }; + marray = derive2 { name="marray"; version="1.50.0"; sha256="1rzbk40zzkr7xll5dzfy92jjmf0qkkw9l806kaz1mwfal8qka87m"; depends=[limma]; }; + maskBAD = derive2 { name="maskBAD"; version="1.16.0"; sha256="0s1l2s2niqsvjk2083i8141mrvf8ardxg5mg7w742r5ga0m469sq"; depends=[affy gcrma]; }; + massiR = derive2 { name="massiR"; version="1.8.0"; sha256="01yhz3cf9wgxszrcvxkyqj8ab8a5p52kqj1zg499147kaf8hciqn"; depends=[Biobase cluster diptest gplots]; }; + matchBox = derive2 { name="matchBox"; version="1.14.0"; sha256="1fnxyig4wmhaymbn4adh7pxxk9qqck796n34w4lrrx0ggxwlz2g1"; depends=[]; }; + mcaGUI = derive2 { name="mcaGUI"; version="1.20.0"; sha256="0akv7l6sy6nvj658q8pjp7dhkkfsx7x9iww9mv0jwyfdn811saa2"; depends=[bpca foreign gWidgets gWidgetsRGtk2 lattice MASS OTUbase proto vegan]; }; + mdgsa = derive2 { name="mdgsa"; version="1.4.2"; sha256="047syngjdzjpad3iqy0s1a6f5pyl3rmsmadasjzc4f3l7xyq6jmn"; depends=[AnnotationDbi cluster DBI GO_db KEGG_db Matrix]; }; + mdqc = derive2 { name="mdqc"; version="1.34.0"; sha256="0xm6v7irlkhbi1ny93fglhixajbp41lkv7yjzr8ysszvdakwrmmr"; depends=[cluster MASS]; }; + meshr = derive2 { name="meshr"; version="1.8.0"; sha256="171is2w5d7i26mmdncz2wx3y48dnqhbzgskwsn3l3c1acmnrpbr6"; depends=[BiocGenerics Category cummeRbund fdrtool MeSH_Aca_eg_db MeSH_AOR_db MeSH_Bsu_168_eg_db MeSH_db MeSH_Hsa_eg_db MeSH_PCR_db MeSH_Syn_eg_db MeSHDbi org_Hs_eg_db S4Vectors]; }; + messina = derive2 { name="messina"; version="1.8.2"; sha256="01p0zbmay73v2ba41fs0hmnn47q7flggc0y0jhgf22cpjmsqm0qj"; depends=[foreach ggplot2 plyr Rcpp survival]; }; + metaArray = derive2 { name="metaArray"; version="1.50.0"; sha256="1kfhiplzxvz0j99h2kigqfwpgpqzp17yl3dq2qw51s99257gwjvd"; depends=[Biobase MergeMaid]; }; + metaCCA = derive2 { name="metaCCA"; version="1.0.2"; sha256="0g345pxmlhkxdx8fm725y52vx8zd24wi5rxhqh5xs087dqyzmy6k"; depends=[]; }; + metaMS = derive2 { name="metaMS"; version="1.8.0"; sha256="1skvlqz8q9k3pqibbjyr9ajx9x1p11649lmh8f0sgi6y4xframq7"; depends=[BiocGenerics CAMERA Matrix robustbase xcms]; }; + metaSeq = derive2 { name="metaSeq"; version="1.12.0"; sha256="1x398spd55qwj4pj5bfsmh0skj4gqy7h4dv16c65lk7r9qmkg99s"; depends=[NOISeq Rcpp snow]; }; + metaX = derive2 { name="metaX"; version="1.4.2"; sha256="0d70jnljn2r26vrsyndf8pac0k731q38l8g84sb932ff7w48sqkf"; depends=[ape BBmisc boot bootstrap CAMERA caret data_table DiffCorr DiscriMiner doParallel dplyr faahKO ggplot2 igraph impute lattice missForest mixOmics Nozzle_R1 pcaMethods pheatmap pls plyr preprocessCore pROC RColorBrewer RCurl reshape2 scales scatterplot3d SSPA stringr tidyr VennDiagram vsn xcms]; }; + metabomxtr = derive2 { name="metabomxtr"; version="1.6.0"; sha256="0shgzl0k2b3ig6gycgl4xf09qwk288p61dqd2gi231p4q825sc5v"; depends=[Biobase Formula multtest optimx plyr]; }; + metagene = derive2 { name="metagene"; version="2.4.4"; sha256="0p8d6fq1zn0k8r7fb6iz80azk866abw1kqahx1lx35vgaxxm9smx"; depends=[BiocParallel DBChIP GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gplots IRanges matrixStats muStat R6 Rsamtools rtracklayer]; }; + metagenomeFeatures = derive2 { name="metagenomeFeatures"; version="1.1.0"; sha256="1z7wj7zglm05ny0caqkj8h22sxgawrh295i4jlis6y39lhwbv6bj"; depends=[Biobase Biostrings dplyr lattice lazyeval magrittr RSQLite ShortRead stringr]; }; + metagenomeSeq = derive2 { name="metagenomeSeq"; version="1.14.2"; sha256="08iwmv4ggsw98h6pf26dzbpb5qg77pcmjapxr77z4mhcram6yaxi"; depends=[Biobase foreach glmnet gplots limma Matrix matrixStats RColorBrewer]; }; + metahdep = derive2 { name="metahdep"; version="1.30.0"; sha256="0yifwp5cya5j8c1kl9a8nfqgn2l8imfjb1gzcxf32c53jwppwbf9"; depends=[]; }; + metaseqR = derive2 { name="metaseqR"; version="1.12.2"; sha256="0ycfqjxd9vyx4dky42yxg3754lx37s1yc3r1nr774r0kbzaykbc3"; depends=[baySeq biomaRt brew corrplot DESeq EDASeq edgeR gplots limma log4r NBPSeq NOISeq qvalue rjson vsn]; }; + methVisual = derive2 { name="methVisual"; version="1.24.0"; sha256="1g4ijymr6bv384vcsdpkamn5mk0gkd5mf7yiyjmbsgzwxx6mrpii"; depends=[Biostrings ca gridBase gsubfn IRanges plotrix sqldf]; }; + methyAnalysis = derive2 { name="methyAnalysis"; version="1.14.0"; sha256="1nva4c9f30x5ym3cd2f3r4dxksihdaqzzskkanb7f6n89xdl512h"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt genefilter GenomeInfoDb GenomicFeatures GenomicRanges genoset Gviz IRanges lumi methylumi org_Hs_eg_db rtracklayer SummarizedExperiment VariantAnnotation]; }; + methylMnM = derive2 { name="methylMnM"; version="1.10.0"; sha256="1944palwb2hfvsi8j4384fhjmqfk41fihq2w9y3cff0993j5i8cp"; depends=[edgeR statmod]; }; + methylPipe = derive2 { name="methylPipe"; version="1.6.2"; sha256="1mci0y9dy1lb5vv7makh4mbm4h5ybdi0ay6qqf343y56zpjdlwmm"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicRanges gplots Gviz IRanges marray Rsamtools S4Vectors SummarizedExperiment]; }; + methylumi = derive2 { name="methylumi"; version="2.18.2"; sha256="1jxmk1r44x847sny1jrkka20a1z27yh7fv9pwgaabl5z8vxhpbyy"; depends=[annotate AnnotationDbi Biobase BiocGenerics FDb_InfiniumMethylation_hg19 genefilter GenomeInfoDb GenomicRanges ggplot2 illuminaio IRanges lattice matrixStats minfi reshape2 S4Vectors scales SummarizedExperiment]; }; + mgsa = derive2 { name="mgsa"; version="1.20.0"; sha256="0zy1mmil5s2jiwknixavxhn05b58qyr87gc1yd7i86z7d0f66zjh"; depends=[gplots]; }; + miRLAB = derive2 { name="miRLAB"; version="1.2.2"; sha256="1wd591kd12dlj8dzxyv7dadi5clr0l6ar9n6lscc2yr16jwlwcv6"; depends=[energy entropy glmnet gplots Hmisc httr impute limma pcalg RCurl Roleswitch stringr]; }; + miRNAmeConverter = derive2 { name="miRNAmeConverter"; version="1.0.2"; sha256="1nc4qgk5sr1l007q5rqm2492azbbmffd7y17r0kfscr2pv67cs4x"; depends=[AnnotationDbi DBI miRBaseVersions_db]; }; + miRNApath = derive2 { name="miRNApath"; version="1.32.0"; sha256="1cijz8wbaq0wg6f0qf37b65fska619fw8vxy57anm258nasi1z8m"; depends=[]; }; + miRNAtap = derive2 { name="miRNAtap"; version="1.6.0"; sha256="0dbqh8jwzqhdjs8gd8095qzhbwn5c8ahqn7qq0dhl1yhhv3hpbw5"; depends=[AnnotationDbi DBI plyr RSQLite sqldf stringr]; }; + miRcomp = derive2 { name="miRcomp"; version="1.2.2"; sha256="19x8ldv1bdnbmjwjaicqmaf7iy391n42h5y1lckjlbcsxbss84bi"; depends=[Biobase KernSmooth miRcompData]; }; + microRNA = derive2 { name="microRNA"; version="1.30.0"; sha256="1y997xxnf6b3magg2jkg26pa6sibz9c30bcc2131minvw2a1x7i4"; depends=[Biostrings]; }; + minet = derive2 { name="minet"; version="3.30.0"; sha256="06ya26k7k8a3pphqfr93xcplrl2di895mnqmvywqg17lgn2df557"; depends=[infotheo]; }; + minfi = derive2 { name="minfi"; version="1.18.6"; sha256="1mbrjmmjib5fw8jvk9fw6gfwfcqwi87qgwjphsvdfwhczlzkii7j"; depends=[beanplot Biobase BiocGenerics Biostrings bumphunter data_table genefilter GenomeInfoDb GenomicRanges GEOquery illuminaio IRanges lattice limma MASS matrixStats mclust nlme nor1mix preprocessCore quadprog RColorBrewer reshape S4Vectors siggenes SummarizedExperiment]; }; + mirIntegrator = derive2 { name="mirIntegrator"; version="1.2.0"; sha256="0axnmf01xdbf50jzi16awx4anj44diyshzhwjy9akcq0fw3x9bs9"; depends=[AnnotationDbi ggplot2 graph org_Hs_eg_db Rgraphviz ROntoTools]; }; + missMethyl = derive2 { name="missMethyl"; version="1.6.2"; sha256="02i343siji4z48zg8p9daxl57smgc3myx2f0s67mmzp59gbabz7q"; depends=[AnnotationDbi BiasedUrn IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest limma methylumi minfi org_Hs_eg_db ruv statmod stringr]; }; + mitoODE = derive2 { name="mitoODE"; version="1.10.0"; sha256="1vgywn96b1p6yndhxcx2297p93skdpw8r7yzfz6ph828camw7g73"; depends=[KernSmooth MASS minpack_lm mitoODEdata]; }; + mmnet = derive2 { name="mmnet"; version="1.10.2"; sha256="18ypmvx4pjqv40k2jclq92gl2cw9qpkakifv2jnaa27qnp1x9ivc"; depends=[Biobase flexmix ggplot2 igraph KEGGREST Matrix plyr RCurl reshape2 RJSONIO stringr XML]; }; + mogsa = derive2 { name="mogsa"; version="1.6.4"; sha256="14mfnsylckgv01k8g2hj5vxbfiih0d0jk77rb0r8p21lcd25ls7a"; depends=[Biobase BiocGenerics cluster corpcor genefilter gplots graphite GSEABase svd]; }; + monocle = derive2 { name="monocle"; version="1.6.2"; sha256="1j65kdzrlzyfzv1in0lswqksv3rs336jddnpxyw8k27iz343dvvf"; depends=[Biobase BiocGenerics cluster combinat fastICA ggplot2 HSMMSingleCell igraph irlba limma matrixStats plyr reshape2 VGAM]; }; + mosaics = derive2 { name="mosaics"; version="2.10.0"; sha256="0kazrdn03a5969d7gy86wfvskpw3bmfib7pbd1p59pic5nnhqznp"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges lattice MASS Rcpp Rsamtools S4Vectors]; }; + motifRG = derive2 { name="motifRG"; version="1.16.0"; sha256="1ds22paqc0923y6z1fy0arw0wxvvmglfvfgarhywv1qywhq68mbq"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 IRanges seqLogo XVector]; }; + motifStack = derive2 { name="motifStack"; version="1.16.2"; sha256="1a37h7ryj9hj43mb1ynrsi5ypfaw2cr1cfmccw44bwf1fn5grzl3"; depends=[ade4 Biostrings grImport MotIV scales XML]; }; + motifbreakR = derive2 { name="motifbreakR"; version="1.2.2"; sha256="0zfvig6rf4ix5hh6mk5lada9sh7cr6nbngqr6gqgm5hy5bvkn51m"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges grImport Gviz IRanges matrixStats MotifDb motifStack rtracklayer S4Vectors stringr TFMPvalue VariantAnnotation]; }; + msa = derive2 { name="msa"; version="1.4.5"; sha256="0g3p5kfyszll09dwdfjwkkdyhnfj1ymk4bfk1j01vlzqhcd3d2hl"; depends=[BiocGenerics Biostrings IRanges Rcpp S4Vectors]; }; + msmsEDA = derive2 { name="msmsEDA"; version="1.10.0"; sha256="0spbbj1vxyyhmhbg79sby9i7hw8lxzn95qp1qpcds6pzbi98555p"; depends=[gplots MASS MSnbase RColorBrewer]; }; + msmsTests = derive2 { name="msmsTests"; version="1.10.0"; sha256="04gdsxdpmrpj8nzm5jn96dzvyxrcjj29nks4n0rx53lqada3zx8y"; depends=[edgeR msmsEDA MSnbase qvalue]; }; + multiClust = derive2 { name="multiClust"; version="1.0.2"; sha256="1a4brwg01ni96p661aqvaivdrfg6x7iwv5sh1303bm7fzr8kyhhh"; depends=[amap cluster ctc dendextend mclust survival]; }; + multiscan = derive2 { name="multiscan"; version="1.32.0"; sha256="0kxnnk55605km690ikfglbnc39kps4a26r2v9wcdfngza0jcf4xa"; depends=[Biobase]; }; + multtest = derive2 { name="multtest"; version="2.28.0"; sha256="11z0rzfzfk2fgl0l7hv9sb6g19d9ixkn634fnfb2pz141bbsrcwd"; depends=[Biobase BiocGenerics MASS survival]; }; + muscle = derive2 { name="muscle"; version="3.14.0"; sha256="0h9czpi4qvl94kgdil6c263k4r55a0baw2h11qn0i8vy6szgb4l0"; depends=[Biostrings]; }; + mvGST = derive2 { name="mvGST"; version="1.6.0"; sha256="16gdxqghch4422vnjf1phzfrdp63043bag2jmhm3yni0z92b47p1"; depends=[annotate AnnotationDbi GO_db GOstats gProfileR graph Rgraphviz stringr topGO]; }; + mygene = derive2 { name="mygene"; version="1.8.0"; sha256="17a5q7zbsm1qk7asz4ddf5vgyxvfsxkpxhn52p5gd6aikv5kjdqr"; depends=[GenomicFeatures Hmisc httr jsonlite plyr S4Vectors sqldf]; }; + myvariant = derive2 { name="myvariant"; version="1.2.0"; sha256="06d7awkmx8fg4m8j09lscs1kvk9nx1nbd0xmb6divsjhb3mx1p0j"; depends=[GenomeInfoDb Hmisc httr jsonlite magrittr plyr S4Vectors VariantAnnotation]; }; + mzID = derive2 { name="mzID"; version="1.10.2"; sha256="18fwrd3df0gbji1g48dd1zblmf7hz33h1jwfx0nana0j8y8x3xr1"; depends=[doParallel foreach iterators plyr ProtGenerics XML]; }; + mzR = derive2 { name="mzR"; version="2.6.3"; sha256="1kfz5kwbjpz3pg0ccrkx0alq14bcp4z6az4k8h3766n9zcb69774"; depends=[Biobase BiocGenerics ProtGenerics Rcpp zlibbioc]; }; + ncdfFlow = derive2 { name="ncdfFlow"; version="2.18.0"; sha256="01614r9507vwz7irdccxb3swlx5jlxrmdcnxjgd7yxzfdwsc012x"; depends=[BH Biobase BiocGenerics flowCore flowViz Rcpp RcppArmadillo zlibbioc]; }; + neaGUI = derive2 { name="neaGUI"; version="1.9.0"; sha256="12sca0i2h7k6lcr525cnc476bf1g6gqzvi6zm0zpdbciyl9cxbny"; depends=[hwriter]; }; + nem = derive2 { name="nem"; version="2.46.0"; sha256="0aa6lgivy69daaixx5zzymlfypn22gn1x0126ygrbv9g8vpzr470"; depends=[boot e1071 graph limma plotrix RBGL RColorBrewer Rgraphviz statmod]; }; + netbenchmark = derive2 { name="netbenchmark"; version="1.4.2"; sha256="0id1b0v6vkzdh030vq3ppfr808kq1blyb6s4jncr772izy4irnmb"; depends=[c3net corpcor fdrtool GeneNet grndata Matrix minet PCIT pracma randomForest Rcpp]; }; + netbiov = derive2 { name="netbiov"; version="1.6.0"; sha256="12d28igggc8mw05bzxl67647akx1yrw671s67jfdc0zyg2xvfgi9"; depends=[igraph]; }; + nethet = derive2 { name="nethet"; version="1.4.2"; sha256="0ygz7zqksp5i1fk5gqpb4dlsqyi3z609379h654arzkr1s1kvdqj"; depends=[CompQuadForm GeneNet ggm ggplot2 glasso glmnet GSA huge ICSNP limma mclust multtest mvtnorm network parcor]; }; + netresponse = derive2 { name="netresponse"; version="1.32.2"; sha256="1qx8xsxlgib73c2bgjxj01y8y47c8mi15708pdb589dm8aldkilq"; depends=[dmt ggplot2 graph igraph mclust minet plyr qvalue RColorBrewer reshape2 Rgraphviz]; }; + networkBMA = derive2 { name="networkBMA"; version="1.14.0"; sha256="1az74f0fa9z9x4d68mjxlzf1d5x1zjam494qs79r294qbf7h7jpr"; depends=[BMA Rcpp RcppArmadillo RcppEigen]; }; + nnNorm = derive2 { name="nnNorm"; version="2.36.0"; sha256="02s0rcwq5b0bar5h8x08xgz1gdvr69dlv4l3s84d4s1rb2bmjipa"; depends=[marray nnet]; }; + nondetects = derive2 { name="nondetects"; version="2.2.0"; sha256="06dkj8fd2l3a0x2zz84g3kfyqsw3pridn05admhag0nalzqiy6c3"; depends=[Biobase HTqPCR limma mvtnorm]; }; + normalize450K = derive2 { name="normalize450K"; version="1.0.0"; sha256="0rfzvg4lc8wppx5g5zhcgp8vh4qw9gynmmnwdgnf48fmdvkirpm9"; depends=[Biobase illuminaio quadprog]; }; + npGSEA = derive2 { name="npGSEA"; version="1.8.0"; sha256="130w9rw7njff90b070kkq395ariy9y409kxxmbq61fmdmnqvxnnk"; depends=[Biobase BiocGenerics GSEABase]; }; + nucleR = derive2 { name="nucleR"; version="2.4.0"; sha256="1s6k181g4q23x1pk9728vbsjia8dlcwn1gl2b9rvwagspidyvq1p"; depends=[Biobase BiocGenerics GenomicRanges IRanges Rsamtools S4Vectors ShortRead]; }; + nucleoSim = derive2 { name="nucleoSim"; version="1.0.2"; sha256="0vyjr0lbswfwdil48pafljz79s384qr7pk4jsfqnih07c8drj5pb"; depends=[IRanges S4Vectors]; }; + nudge = derive2 { name="nudge"; version="1.38.0"; sha256="01gvisf0894hz1jgmhf9d0b98rj92k1bfhy3pn1fpqp4qq9i3dp0"; depends=[]; }; + occugene = derive2 { name="occugene"; version="1.32.0"; sha256="06ywswmbmkajwa7wwj0bbmgwk50h0af9b5m1bvm26w6yqkpxyn0v"; depends=[]; }; + odseq = derive2 { name="odseq"; version="1.0.2"; sha256="1y2nvm05pf7pmrrb1kfvkspqwrlq5fsk28kbp6bh3df7f4rahwpx"; depends=[kebabs mclust msa]; }; + oligo = derive2 { name="oligo"; version="1.36.1"; sha256="1jwbj5b3n9vwgf81cr8cnxhiynmnh2yjzsd1520a67na739ddsxr"; depends=[affxparser affyio Biobase BiocGenerics Biostrings DBI ff oligoClasses preprocessCore RSQLite zlibbioc]; }; + oligoClasses = derive2 { name="oligoClasses"; version="1.34.0"; sha256="1jz5s7srrdxxfppplajq7q4c1sqwbw6lwsb0xms2chw1qnshj3r5"; depends=[affyio Biobase BiocGenerics BiocInstaller Biostrings ff foreach GenomicRanges IRanges RSQLite S4Vectors SummarizedExperiment]; }; + omicade4 = derive2 { name="omicade4"; version="1.12.0"; sha256="031vnyv15aw1kmw0cdjsmb2q0g90hc1316dh8za64z0k0cmhdkb9"; depends=[ade4 made4]; }; + oneChannelGUI = derive2 { name="oneChannelGUI"; version="1.38.0"; sha256="0x7s8f6cvl6dlrjq5g7wq9542rpjqqgal1x0jh1za667n5cw1zgv"; depends=[affylmGUI Biobase Biostrings chimera IRanges Rsamtools siggenes tkrplot tkWidgets]; }; + ontoCAT = derive2 { name="ontoCAT"; version="1.24.0"; sha256="188j6wl5y9zvki4gzfv58i50vf56q36snk025pkj973nll82m4vl"; depends=[rJava]; }; + openCyto = derive2 { name="openCyto"; version="1.10.3"; sha256="1i0qq7v5s09cm6icp7347dlcbf9n81fai8xxv6ahk90jngmlsncs"; depends=[Biobase clue data_table flowClust flowCore flowStats flowViz flowWorkspace graph gtools ks lattice MASS ncdfFlow plyr R_utils RBGL RColorBrewer Rcpp rrcov]; }; + oposSOM = derive2 { name="oposSOM"; version="1.10.0"; sha256="0ybyqxy4z0djppjj7gqw71pm4ll6b5rzwrc7zfsil9n1n33ajvdj"; depends=[ape Biobase biomaRt fastICA fdrtool igraph KernSmooth pixmap scatterplot3d som]; }; + oppar = derive2 { name="oppar"; version="1.0.2"; sha256="0nzjiy18amidc7x388lpq65i2yj0lvy0xgwzzgnlyqfjcdhlasi4"; depends=[Biobase GSEABase GSVA]; }; + pRoloc = derive2 { name="pRoloc"; version="1.12.4"; sha256="1qvg41wyn9snqr0fqygcpma4q80kr7gxsfh78yz4jmykqdvgwm53"; depends=[Biobase BiocGenerics BiocParallel biomaRt caret class e1071 FNN ggplot2 gtools kernlab knitr lattice MASS mclust MLInterfaces MSnbase mvtnorm nnet plyr proxy randomForest RColorBrewer Rcpp RcppArmadillo sampling scales]; }; + pRolocGUI = derive2 { name="pRolocGUI"; version="1.6.2"; sha256="1ka87amamlzbapb1ih0x5mlcq0lmz4prqsdf0j4il01kq5x9ml5i"; depends=[dplyr DT MSnbase pRoloc scales shiny]; }; + paircompviz = derive2 { name="paircompviz"; version="1.10.0"; sha256="0b1vfkg554pmm0nmfjlbriqvbvy4fzik8cwn7qqsvzqs1928ii0i"; depends=[Rgraphviz]; }; + pandaR = derive2 { name="pandaR"; version="1.4.2"; sha256="17gx2hfr1s79c69y8w3fmfrrvkzbr2m0917cq7wwdpxxi376b6yk"; depends=[Biobase BiocGenerics ggplot2 hexbin igraph matrixStats plyr reshape RUnit]; }; + panp = derive2 { name="panp"; version="1.42.0"; sha256="17hlbi20bxm2qidk8aa224vsqp9dfjjd79yhh0711h9aylwixn6m"; depends=[affy Biobase]; }; + parglms = derive2 { name="parglms"; version="1.4.2"; sha256="1k04zpwwk1aknlwg5xqsl1pszwbh2873606y2ycqsi7ngz1yhwnx"; depends=[BatchJobs BiocGenerics doParallel foreach]; }; + parody = derive2 { name="parody"; version="1.30.0"; sha256="03hvv8jgk56h60gfm62ia4f67fhszs8dv5whx3frriwbf7w2jxaw"; depends=[]; }; + pathRender = derive2 { name="pathRender"; version="1.40.0"; sha256="1fa9d2sp1rxwmxkd1snqa5ay5q5znx8xbmn3jsga9giw9nh7iras"; depends=[AnnotationDbi cMAP graph RColorBrewer Rgraphviz]; }; + pathVar = derive2 { name="pathVar"; version="1.2.0"; sha256="15jha74blfxdr5398gdwg59p4wmymjkmwvinrspw29dqkxn0wm64"; depends=[data_table EMT ggplot2 gridExtra Matching mclust]; }; + pathifier = derive2 { name="pathifier"; version="1.10.0"; sha256="0kj9jm0az186d89lr6p016zsnj3zjcbwcs094jqf322zz795c275"; depends=[princurve R_oo]; }; + pathview = derive2 { name="pathview"; version="1.12.0"; sha256="1vx6s2ad0yaqv2mnc6257qgmghffhyh7cwsir2pcvy7jd7xdkcl8"; depends=[AnnotationDbi graph KEGGgraph KEGGREST org_Hs_eg_db png Rgraphviz XML]; }; + paxtoolsr = derive2 { name="paxtoolsr"; version="1.6.3"; sha256="1l6d4r6c3mjsaczw4cyiglfc8dw34k56bz0vd5ddaiy01kqn5g1w"; depends=[data_table httr igraph plyr R_utils rJava rjson XML]; }; + pbcmc = derive2 { name="pbcmc"; version="1.0.0"; sha256="0xchby283wni800wlslk7rfdm7nqnasli1d81al8rsn98lachyiq"; depends=[Biobase BiocGenerics BiocParallel cowplot genefu ggplot2 gridExtra limma reshape2]; }; + pcaExplorer = derive2 { name="pcaExplorer"; version="1.0.2"; sha256="0nr84v2mwzw0bbz5y8llgkpkg10jalc0ciwnqgaskl1skxvhc4ja"; depends=[AnnotationDbi d3heatmap DESeq2 DT genefilter GenomicRanges ggplot2 ggrepel GO_db GOstats IRanges limma NMF plyr S4Vectors scales shiny shinyBS shinydashboard SummarizedExperiment topGO]; }; + pcaGoPromoter = derive2 { name="pcaGoPromoter"; version="1.16.0"; sha256="08c8ppxb6md10ar252xii7qgr6pjlbbiim9ap1giib7dyvzf4qjj"; depends=[AnnotationDbi Biostrings ellipse]; }; + pcaMethods = derive2 { name="pcaMethods"; version="1.64.0"; sha256="0dkvsh758hv16h6irhr8xy4sgsxp2ki1gpan33vyqq0fzlbibhxl"; depends=[Biobase BiocGenerics MASS Rcpp]; }; + pcot2 = derive2 { name="pcot2"; version="1.40.0"; sha256="011p0935bkvlm12f0lbcflcprlzn34m25gj64169wp15lpygpcky"; depends=[amap Biobase]; }; + pdInfoBuilder = derive2 { name="pdInfoBuilder"; version="1.36.0"; sha256="0f57fsp1aaz4sliqzamjma7shmiqfn82ggdcnzaysizn4r86gd4b"; depends=[affxparser Biobase BiocGenerics Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pdmclass = derive2 { name="pdmclass"; version="1.44.0"; sha256="0mcd1s33j0l0nqma31dwh7wyx3vfbvw68rnlxksp5a6d6fx0sxlb"; depends=[Biobase fibroEset mda]; }; + pepStat = derive2 { name="pepStat"; version="1.6.2"; sha256="1a95f5sha96ww4y92qjycimclikd19x4dc5az9nha6c7v5l67nqw"; depends=[Biobase data_table fields GenomicRanges ggplot2 IRanges limma plyr]; }; + pepXMLTab = derive2 { name="pepXMLTab"; version="1.6.0"; sha256="1amgga42b7rds5k9c2m3is1s6lgh80sc8df7y9yfw1m09gwjg8vd"; depends=[XML]; }; + phenoDist = derive2 { name="phenoDist"; version="1.20.0"; sha256="1car8mpffbbabnh7fbsrk445y0ld45lz7953sbsbrfwd9chj4dk9"; depends=[e1071 imageHTS]; }; + phenoTest = derive2 { name="phenoTest"; version="1.20.0"; sha256="0bcg6qd51i9npskjsiflz5fl6135wchlk0pqpbnv0g33fzqvgrgi"; depends=[annotate AnnotationDbi Biobase biomaRt BMA Category ellipse genefilter ggplot2 gplots GSEABase Heatplus hgu133a_db Hmisc hopach HTSanalyzeR limma mgcv SNPchip survival xtable]; }; + phyloseq = derive2 { name="phyloseq"; version="1.16.2"; sha256="12h69xckgsnl12mlmn7nard4pac42w5r8m8gj4vaml9w2hwlxcgq"; depends=[ade4 ape Biobase BiocGenerics biomformat Biostrings cluster data_table foreach ggplot2 igraph multtest plyr reshape2 scales vegan]; }; + piano = derive2 { name="piano"; version="1.12.1"; sha256="08zl41mv4wldpbnjhgqynp56csksz9x2ggy3v6axbsf4av08xl0p"; depends=[Biobase BiocGenerics gplots igraph marray relations]; }; + pickgene = derive2 { name="pickgene"; version="1.44.0"; sha256="0ilz8dcidximbrijy8a957hf6rxp54h45c36wmd90cbmxj54lv3c"; depends=[MASS]; }; + pint = derive2 { name="pint"; version="1.22.0"; sha256="01ydp1y039vq359ir7h13wl7avar8layx10r132488qdv7g65gnd"; depends=[dmt Matrix mvtnorm]; }; + pkgDepTools = derive2 { name="pkgDepTools"; version="1.38.0"; sha256="0rcrq32y3qi63ad8inc71y1gxydjc110lgz4bsvdkxykwmyxabgk"; depends=[graph RBGL]; }; + plateCore = derive2 { name="plateCore"; version="1.30.0"; sha256="00ccxrad5xfklwh2040hvp20wqqqgh0351qj00y11bmpz4ylng2p"; depends=[Biobase flowCore flowStats flowViz lattice latticeExtra MASS robustbase]; }; + plethy = derive2 { name="plethy"; version="1.10.0"; sha256="0mvvhzacz1m4k9ig898r6kn7c1f7f96lky358km28gpk463cm3bp"; depends=[Biobase BiocGenerics DBI ggplot2 IRanges plyr RColorBrewer reshape2 RSQLite S4Vectors Streamer]; }; + plgem = derive2 { name="plgem"; version="1.44.0"; sha256="07ygi6gvll2bnjwn8y4nmmgcz1daah0zzgidnwblzbyj4s2d4dam"; depends=[Biobase MASS]; }; + plier = derive2 { name="plier"; version="1.42.0"; sha256="0fqdvp75hz8c3k3779kdbl4xdjfqqvbd11vp0ad9jxan7j5giyca"; depends=[affy Biobase]; }; + plrs = derive2 { name="plrs"; version="1.12.0"; sha256="0pwpbpp05r95qcsk00icspna35lbw67d3h5apvgl4mibdw4jyvw4"; depends=[Biobase BiocGenerics CGHbase ic_infer marray quadprog Rcsdp]; }; + plw = derive2 { name="plw"; version="1.32.0"; sha256="114lpq9ksf8sbbcwvaczkmqgqqjfwpay1c82v192bmrhpjr3g6y4"; depends=[affy MASS]; }; + pmm = derive2 { name="pmm"; version="1.4.0"; sha256="1kh9h6033lq4mix4x4nw67dj6kw4y4k333i72swfki0vl6b43lip"; depends=[lme4]; }; + podkat = derive2 { name="podkat"; version="1.4.2"; sha256="0bfa2f04yr71vm1w9bqqij8gb68d5n5v1ydcnai016y7gkxxrb25"; depends=[Biobase BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp Rsamtools]; }; + polyester = derive2 { name="polyester"; version="1.8.3"; sha256="13visqfz6kpjqyqq8i6zwg7mr2f2p5rlk6pssysa8yc0j7bk1hrn"; depends=[BiocGenerics Biostrings IRanges limma logspline S4Vectors]; }; + ppiStats = derive2 { name="ppiStats"; version="1.38.0"; sha256="1z24495iy33qk7ymq08zrpl4kfv0s61slibsycn1diwhgshzglx3"; depends=[Biobase Category graph lattice ppiData RColorBrewer ScISI]; }; + pqsfinder = derive2 { name="pqsfinder"; version="1.0.2"; sha256="0zqxr39lpzhlv22fdhlbihnr7hwwql94amhdvddbp25frdizmann"; depends=[BH Biostrings flowCore GenomicRanges IRanges Rcpp S4Vectors]; }; + prada = derive2 { name="prada"; version="1.48.0"; sha256="0209h2v72kqp6993kvfbddpc1s2qh880ag6j60lqfaz3zb09cd32"; depends=[Biobase BiocGenerics MASS RColorBrewer rrcov]; }; + prebs = derive2 { name="prebs"; version="1.12.0"; sha256="0rbas8hkzlsn1ch3pgwz8sh5siwfgdfr0hpr592vjp9mmxz4jl2j"; depends=[affy Biobase GenomeInfoDb GenomicAlignments GenomicRanges IRanges RPA S4Vectors]; }; + predictionet = derive2 { name="predictionet"; version="1.18.0"; sha256="0b39arsfjxz43ybm479aisl5pc2n5z4vpva5whzr8z7qh382bfan"; depends=[catnet igraph MASS penalized RBGL]; }; + preprocessCore = derive2 { name="preprocessCore"; version="1.34.0"; sha256="0bcfi26ahs4ybagvz29vlp1wldhhbwwh73xz6v6xb07nakyzb6cf"; depends=[]; }; + proBAMr = derive2 { name="proBAMr"; version="1.6.0"; sha256="0r5sw67h8dwqbaizvaz7prch4jxzj6gfvcym1iv30nim7iadnd0m"; depends=[AnnotationDbi Biostrings GenomicFeatures GenomicRanges IRanges rtracklayer]; }; + procoil = derive2 { name="procoil"; version="2.0.2"; sha256="0j3n3nxldwzv3pjn2djnk8ql97x6xppn0lhcz6nq4glwcdrly47b"; depends=[Biostrings kebabs S4Vectors]; }; + profileScoreDist = derive2 { name="profileScoreDist"; version="1.0.2"; sha256="0fl71nlvzl7gi96py4q63qkrd33xrpqcvld2jly7sv0cj2ng36nc"; depends=[BiocGenerics Rcpp]; }; + prot2D = derive2 { name="prot2D"; version="1.10.0"; sha256="1iy2lklhd4hmmf66z2yzs5bm8zmbcmdk52b0n6f4m1hlfwb0cv8n"; depends=[Biobase fdrtool impute limma MASS Mulcom qvalue samr st]; }; + proteinProfiles = derive2 { name="proteinProfiles"; version="1.12.1"; sha256="07ymi2m0vrnf4dzd0m6hard90y80k1v1r4i3ci8pa5mgfziws70s"; depends=[]; }; + proteoQC = derive2 { name="proteoQC"; version="1.8.2"; sha256="0z8swyyvwcw8phwnnsvjrvr21fh2m453k57b69sqb87hisczg2ra"; depends=[ggplot2 MSnbase Nozzle_R1 plyr Rcpp reshape2 rTANDEM seqinr VennDiagram XML]; }; + psygenet2r = derive2 { name="psygenet2r"; version="1.4.0"; sha256="1mw1d95fbq2b88by9hmil3vycrqbmpmg2kasx4grypiz1ximyngb"; depends=[BgeeDB biomaRt ggplot2 igraph RCurl reshape2 stringr topGO]; }; + puma = derive2 { name="puma"; version="3.14.0"; sha256="0pd87cd4qn81839vvlxcvivwnfl40rbgjqz1mrmv4rbwgqz1ail5"; depends=[affy affyio Biobase mclust oligo oligoClasses]; }; + pvac = derive2 { name="pvac"; version="1.20.0"; sha256="0n62i5byxrw879q0gxd9sbg2by4cy76f8ngmbxnwpz4bnc8j6vpj"; depends=[affy Biobase]; }; + pvca = derive2 { name="pvca"; version="1.12.0"; sha256="0jcswb05gwrwc2zv3idzr0qcp7p1bn32xx8rhmq557aiirql1dib"; depends=[Biobase lme4 Matrix vsn]; }; + pwOmics = derive2 { name="pwOmics"; version="1.4.0"; sha256="121qvb2mlnq7as5bjb2xzq7y8gz4x47wg2z3s7s40zvglgpdjf03"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics biomaRt data_table GenomicRanges gplots igraph rBiopaxParser STRINGdb]; }; + qcmetrics = derive2 { name="qcmetrics"; version="1.10.2"; sha256="0mr0iabnj51wdhv9q5wifhisfl002dhddvscqpp78kycv12dvmga"; depends=[Biobase knitr Nozzle_R1 pander S4Vectors xtable]; }; + qpcrNorm = derive2 { name="qpcrNorm"; version="1.30.0"; sha256="127lqq0p80h920c5lf6k2ffng9fl3p78ivhnkk9y9drv2p2imr5f"; depends=[affy Biobase limma]; }; + qpgraph = derive2 { name="qpgraph"; version="2.6.1"; sha256="0y2dlaww0wyrmj73h50478fjzlg8cib6rsimzhrhh48gvgaw5whl"; depends=[annotate AnnotationDbi Biobase BiocParallel GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges Matrix mvtnorm qtl Rgraphviz S4Vectors]; }; + qrqc = derive2 { name="qrqc"; version="1.26.0"; sha256="0r0gds35czs1xq5gv94n3c5i5gr2bjswij7l048npb8cqsmpvdq5"; depends=[Biostrings biovizBase brew ggplot2 plyr reshape Rsamtools testthat xtable]; }; + quantro = derive2 { name="quantro"; version="1.6.2"; sha256="1rv0hihccq35cjf70vpk12y60w5kl9iwhhxx0fmjbax230v4vjmg"; depends=[Biobase doParallel foreach ggplot2 iterators minfi RColorBrewer]; }; + quantsmooth = derive2 { name="quantsmooth"; version="1.38.0"; sha256="1c69rrl8cijixlcr9kzcs3wfvgizvvrsyglqr8s10s23drrwywzb"; depends=[quantreg]; }; + qusage = derive2 { name="qusage"; version="2.4.0"; sha256="125mp6w9g335sjkf2894iycp98s5jcz3jljy0l6s46pbpy0hc77v"; depends=[Biobase limma lsmeans nlme]; }; + qvalue = derive2 { name="qvalue"; version="2.4.2"; sha256="08zcqxs6mrqxin01m998s9lglb9ylcb4p7sqd8am57z4qcqwwcra"; depends=[ggplot2 reshape2]; }; + r3Cseq = derive2 { name="r3Cseq"; version="1.18.0"; sha256="05rli70p45q10b7gk9k4fanw35ayljj6b6079phdsm1v7vnbdkw5"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges IRanges qvalue RColorBrewer Rsamtools rtracklayer sqldf VGAM]; }; + rBiopaxParser = derive2 { name="rBiopaxParser"; version="2.10.0"; sha256="1yzaj7fra1m4f89j5n1iqv9iiq9w9j5crscdhd2plm331nparhiv"; depends=[data_table XML]; }; + rCGH = derive2 { name="rCGH"; version="1.2.2"; sha256="0ysyhgnzb50222mjlyzawdw0xw10xw8isd5knj81hwn9x80ag6jp"; depends=[aCGH affy AnnotationDbi DNAcopy GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges lattice limma mclust org_Hs_eg_db plyr shiny TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + rGADEM = derive2 { name="rGADEM"; version="2.20.0"; sha256="0m1nmab4xmw4v1b6nvb3x7f7kiq24rdw4xzh591qs90rl4r0y339"; depends=[Biostrings BSgenome IRanges seqLogo]; }; + rGREAT = derive2 { name="rGREAT"; version="1.4.2"; sha256="08daai2dwsahsnc1yzrnbs8bs2yadz2vd7fkpaigp4k6i9b0mvrm"; depends=[GenomicRanges GetoptLong IRanges RCurl rjson]; }; + rHVDM = derive2 { name="rHVDM"; version="1.38.0"; sha256="0806iyx00mpi4jv9ff6x3ncfzvrk4smp60l91w5xldwysxmwn10q"; depends=[affy Biobase minpack_lm R2HTML]; }; + rMAT = derive2 { name="rMAT"; version="3.22.0"; sha256="00gg376hqxpg02vwv6qklgaivxj04bcb6d8vd6cvdnn43j2ffpdr"; depends=[affxparser Biobase BiocGenerics IRanges]; }; + rRDP = derive2 { name="rRDP"; version="1.6.0"; sha256="0rv2cj91w6xp7q066imgkw3r3yiwfvrl3qhm89nmnqbda8sgnw2i"; depends=[Biostrings]; }; + rSFFreader = derive2 { name="rSFFreader"; version="0.20.0"; sha256="067mykdwa1xzr0jhp95nmdvj4z0kp983vsimpcshqzpifv7xj32s"; depends=[Biostrings IRanges S4Vectors ShortRead XVector]; }; + rTANDEM = derive2 { name="rTANDEM"; version="1.12.0"; sha256="01ghsf4wr9pvssd6qs1jkxav53bw1mjyirik7992rdam7j9lidzr"; depends=[data_table Rcpp XML]; }; + rTRM = derive2 { name="rTRM"; version="1.10.2"; sha256="1lr3f2ysw8rwqb1l5x29vqsyp4934jl9jb3yjyqqbacgrfxf7syb"; depends=[AnnotationDbi DBI igraph RSQLite]; }; + rTRMui = derive2 { name="rTRMui"; version="1.10.0"; sha256="0j622hasfzqszsh09q9w4prv8dqbdy7hnyrrdvhbx2fkm1r6h9zp"; depends=[MotifDb org_Hs_eg_db org_Mm_eg_db rTRM shiny]; }; + rain = derive2 { name="rain"; version="1.6.0"; sha256="07xcqq6wb81220l8c6hb8i2d9s8vysr577bb53khxsrqnv4am57w"; depends=[gmp multtest]; }; + rama = derive2 { name="rama"; version="1.46.0"; sha256="01xc7ys5505a8krb785w4l36yf7n050m4cdnk00vhkd60j0g6dy9"; depends=[]; }; + randPack = derive2 { name="randPack"; version="1.18.0"; sha256="08mnwj7lb7z6pffnpvilii6bphzb5vkc4f1fzyvgbbk3zvdcrajf"; depends=[Biobase]; }; + rbsurv = derive2 { name="rbsurv"; version="2.30.0"; sha256="1q89kz0wqixl6m9vp8x54255j2qjpkb60jd0y8a24kpphln54afq"; depends=[Biobase survival]; }; + rcellminer = derive2 { name="rcellminer"; version="1.4.2"; sha256="0256asrz6ivjvhkwskfk71q6n3xdgnjqbggp9lz8dvsk2wl8snrn"; depends=[Biobase fingerprint gplots rcdk rcellminerData shiny stringr]; }; + reb = derive2 { name="reb"; version="1.50.0"; sha256="0bi8jv4r5h7hbkn6m8wc2kv2qyadc0gvx16jkwsk5p450lh5c5ba"; depends=[Biobase idiogram]; }; + recoup = derive2 { name="recoup"; version="1.0.2"; sha256="09cgbdqv9q60dhd972mcgyrfcczv52idni69yj2c4jnbmx1224ks"; depends=[BiocGenerics biomaRt circlize ComplexHeatmap GenomicAlignments GenomicRanges ggplot2 plyr rtracklayer]; }; + regionReport = derive2 { name="regionReport"; version="1.6.5"; sha256="0fa9vhx2as2agbij1scpsih5f31ksqdvvrfj7mn2d3rkz8sqi9a7"; depends=[DEFormats derfinder DESeq2 GenomeInfoDb GenomicRanges knitcitations knitr knitrBootstrap RefManageR rmarkdown S4Vectors SummarizedExperiment]; }; + regioneR = derive2 { name="regioneR"; version="1.4.2"; sha256="0qn5say4gy9l1lli0i98i4amjqz75f390689dxn9ncfdcaqxkprw"; depends=[BSgenome GenomeInfoDb GenomicRanges IRanges memoise rtracklayer]; }; + rfPred = derive2 { name="rfPred"; version="1.10.0"; sha256="1k1s7i9va0dnnii76nnhcv4g4a4b03rmhicl7hsbmy56fnx91qf9"; depends=[data_table GenomicRanges IRanges Rsamtools]; }; + rgsepd = derive2 { name="rgsepd"; version="1.4.2"; sha256="0nj8x65q0642c6gimll84r2794bw41iz1iimqfznjkndv344a8g8"; depends=[AnnotationDbi biomaRt DESeq2 GO_db goseq gplots hash org_Hs_eg_db SummarizedExperiment]; }; + rhdf5 = derive2 { name="rhdf5"; version="2.16.0"; sha256="1a1bwnwqfx40jfhf0cv6ajxdh4k9y9z5zm446cjdx8fw6garam3j"; depends=[zlibbioc]; }; + riboSeqR = derive2 { name="riboSeqR"; version="1.6.0"; sha256="0n4apcqgcyw71sypjkia45q61i4z35rq7r653i53fhsck4prwgzx"; depends=[abind GenomicRanges]; }; + rnaSeqMap = derive2 { name="rnaSeqMap"; version="2.30.0"; sha256="0y5m2prpvg10xpidvihvzmywi08vhj23mi3xx9i49kn5jx46jiix"; depends=[Biobase DBI DESeq edgeR GenomicAlignments GenomicRanges IRanges Rsamtools]; }; + rnaseqcomp = derive2 { name="rnaseqcomp"; version="1.2.2"; sha256="0hfixw4fv0s38ar1faafvvm2z9jflh7lxzcmb8m8751b0wn9mkq2"; depends=[RColorBrewer]; }; + roar = derive2 { name="roar"; version="1.8.0"; sha256="1ymc4bgbi90nyz4lalrwr51n138vxr59f9lvr8j454ikdda6vpgs"; depends=[BiocGenerics GenomeInfoDb GenomicAlignments GenomicRanges IRanges rtracklayer S4Vectors SummarizedExperiment]; }; + rols = derive2 { name="rols"; version="2.0.3"; sha256="0irk8h8vgpxgcka1ad5grsxq6dw734flshlsyicv96kg3nb7qqrq"; depends=[Biobase httr jsonlite progress]; }; + ropls = derive2 { name="ropls"; version="1.4.6"; sha256="1pls9c5l8lidj6cdvls3gk0mc1sy4374mbikn95fzj4vw46vcpaz"; depends=[]; }; + rpx = derive2 { name="rpx"; version="1.8.3"; sha256="1aq4hp38wiqv1p6lhjj8d759sr4sk6jy1jmnnb16ln4jls77hs7f"; depends=[RCurl XML]; }; + rqubic = derive2 { name="rqubic"; version="1.18.0"; sha256="0lv9xmip5prbkb4dha7lj7nii7wvk1wvcyad8chir76lks1ysdhn"; depends=[biclust Biobase BiocGenerics]; }; + rsbml = derive2 { name="rsbml"; version="2.30.0"; sha256="1q30yl7fny5rh1bai0z5gc5l7ci6qys0j59j417glc2pwsampcq4"; depends=[BiocGenerics graph]; }; + rtracklayer = derive2 { name="rtracklayer"; version="1.32.2"; sha256="190767zpwc7maqjpy0x5bpkm0jp1vfawy9991fifw0mc634cjkga"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicRanges IRanges RCurl Rsamtools S4Vectors XML XVector zlibbioc]; }; + sRAP = derive2 { name="sRAP"; version="1.12.0"; sha256="1wxg597ks3xa1srl8mwh90y09jc73758bfcw1pfwq2wpym5x6qsf"; depends=[gplots pls qvalue ROCR WriteXLS]; }; + sSeq = derive2 { name="sSeq"; version="1.10.0"; sha256="1w33zc6kaxm5ripji4n2gc0sk29fqq0nzv8nmddx3qwvhv1x91k2"; depends=[caTools RColorBrewer]; }; + safe = derive2 { name="safe"; version="3.12.0"; sha256="0f2i6zqc5x742r6501qsn0c8g0ld4lkvmvj6a2sjjacpj8g663am"; depends=[AnnotationDbi Biobase SparseM]; }; + sagenhaft = derive2 { name="sagenhaft"; version="1.42.0"; sha256="181sw6wdkv7c3sb9m9hfgd7ki3rv63p0k5mfhal7j48wphd1l8f9"; depends=[SparseM]; }; + sangerseqR = derive2 { name="sangerseqR"; version="1.8.2"; sha256="106p78f804b2ibkrkg6j2dxp6v9qsr03g4shkkcawb698qvgbr38"; depends=[Biostrings shiny]; }; + sapFinder = derive2 { name="sapFinder"; version="1.10.0"; sha256="0a5kq447l0f3mdml4ykcdvp4whqzc4pn3zsvzjhrxc06d4a91y5k"; depends=[pheatmap Rcpp rTANDEM]; }; + saps = derive2 { name="saps"; version="2.4.2"; sha256="191kmdf5czf96d7likysfxm13z240qd4z22n3dwdw94akpsfvrrp"; depends=[piano reshape2 survcomp survival]; }; + savR = derive2 { name="savR"; version="1.10.0"; sha256="14d3r64w00j99cd9wdlcxcyhlp278skyadn0dcmmjg2lfcwv9dj5"; depends=[ggplot2 gridExtra reshape2 scales XML]; }; + sbgr = derive2 { name="sbgr"; version="1.1.1"; sha256="1z6xz5apv8cg6b0ciarvj0zn8s5xa93sfirzmldwsx9wmnm95kqq"; depends=[httr jsonlite objectProperties stringr]; }; + scater = derive2 { name="scater"; version="1.0.4"; sha256="1zmaml2mbj5fkxfnah5klm2kyx09fghqddmbb4084bz7w737s2by"; depends=[Biobase BiocGenerics biomaRt data_table dplyr edgeR ggplot2 limma matrixStats plyr reshape2 rhdf5 rjson shiny shinydashboard tximport viridis]; }; + scde = derive2 { name="scde"; version="2.0.1"; sha256="1d1wfcaxj7j4zhvs35038z7zdsn3idqhv1hb1s0bhhrvxyh95j1v"; depends=[BiocParallel Cairo edgeR extRemes flexmix MASS mgcv nnet pcaMethods quantreg RColorBrewer Rcpp RcppArmadillo rjson RMTstat Rook]; }; + scran = derive2 { name="scran"; version="1.0.4"; sha256="0z748nmy5z346anbv33p7knh489d556aghrwdpp8jjv8lqqy6fha"; depends=[Biobase BiocGenerics BiocParallel dynamicTreeCut edgeR limma Matrix scater zoo]; }; + scsR = derive2 { name="scsR"; version="1.8.0"; sha256="033f6kdmw70mf2hjadsanb1wx5wgnj69ipixb4n16262bvz54ajy"; depends=[BiocGenerics Biostrings ggplot2 hash IRanges plyr RColorBrewer sqldf STRINGdb]; }; + segmentSeq = derive2 { name="segmentSeq"; version="2.6.0"; sha256="07xh6gpi1pprinza2vswjpihff7hjqzsj3j6yrqmrhyja63n0ni8"; depends=[baySeq GenomicRanges IRanges S4Vectors ShortRead]; }; + seq2pathway = derive2 { name="seq2pathway"; version="1.4.0"; sha256="19r1gpmpzrxiyjx7gila1ldn714k15whhjg25kv79s2ji5fsqcrb"; depends=[biomaRt GenomicRanges GSA nnet seq2pathway_data WGCNA]; }; + seqCNA = derive2 { name="seqCNA"; version="1.18.0"; sha256="16hbmzlc69jpirl8yix3lnx3hbw7jdj7njwxar47w3r3vbqhc7xg"; depends=[adehabitatLT doSNOW GLAD seqCNA_annot]; }; + seqLogo = derive2 { name="seqLogo"; version="1.38.0"; sha256="01jddx62nhi3r7czbh9hxy0wwpazbc9ax1fgagfxl6p4kx9xz9rb"; depends=[]; }; + seqPattern = derive2 { name="seqPattern"; version="1.4.0"; sha256="1dj9hfnbdj11yjxwd8jmxrdkj7n6gmaaj6244g2psgarhjcp4wfb"; depends=[Biostrings GenomicRanges IRanges KernSmooth plotrix]; }; + seqTools = derive2 { name="seqTools"; version="1.6.0"; sha256="1xzc2457rjnc901dq0jaqpya04cxmk9c1y41495hmx5yimls2hnj"; depends=[zlibbioc]; }; + seqbias = derive2 { name="seqbias"; version="1.20.0"; sha256="0yhzc8iyiqja93d919sh8jxnxq4wkydfbiygk8g3h45amzzx3iwb"; depends=[Biostrings GenomicRanges Rsamtools zlibbioc]; }; + seqplots = derive2 { name="seqplots"; version="1.10.2"; sha256="0dd6pmmidbkrr1gxflly1skj8qk3h882jas0a49ibmyyhgydffqx"; depends=[Biostrings BSgenome class DBI digest DT fields GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges jsonlite kohonen plotrix RColorBrewer reshape2 RSQLite rtracklayer S4Vectors shiny]; }; + sevenbridges = derive2 { name="sevenbridges"; version="1.2.8"; sha256="1b8l26anjq1bv1x71y1py3807kv4f9wzc4n2fxdgrvzdkimmnymp"; depends=[curl docopt dplyr httr jsonlite liftr objectProperties rstudioapi S4Vectors stringr uuid yaml]; }; + shinyMethyl = derive2 { name="shinyMethyl"; version="1.6.2"; sha256="0q7lkmyh2hrxfmv5vl42d35hrgisc6x0iwgw9ahdiskmp13dwjqs"; depends=[BiocGenerics IlluminaHumanMethylation450kmanifest matrixStats minfi RColorBrewer shiny]; }; + shinyTANDEM = derive2 { name="shinyTANDEM"; version="1.10.0"; sha256="0xg5mhkgdpx12x9ys9w9bfqrg2595av88g975p50k2wikv9map14"; depends=[mixtools rTANDEM shiny xtable]; }; + sigPathway = derive2 { name="sigPathway"; version="1.40.0"; sha256="0q1xwm87ia1zp5ry5pk5qb2rcxfi2s4ifiyn4yi24a7n2byanqy4"; depends=[]; }; + sigaR = derive2 { name="sigaR"; version="1.15.0"; sha256="0z1nkxafiv71virpgsb32ji6z88yb9r6w7jvp2ck5yqxvv0brsg2"; depends=[Biobase CGHbase corpcor igraph marray MASS mvtnorm penalized quadprog snowfall]; }; + siggenes = derive2 { name="siggenes"; version="1.46.0"; sha256="05adv1phvj8x9f1rnd2cz1xxyfbyk6zl0004vgfnsipklqy22z2c"; depends=[Biobase multtest]; }; + sigsquared = derive2 { name="sigsquared"; version="1.4.0"; sha256="0683my2rflshlgx9nhamqvp3fqnxp0fb8jj14wqh29drrx6v93jk"; depends=[Biobase survival]; }; + similaRpeak = derive2 { name="similaRpeak"; version="1.4.2"; sha256="1rdpf77mbqrs4ja0f9298qp8jfcwxl2hcbxk0ss5aia1cds8g475"; depends=[GenomicAlignments R6 Rsamtools rtracklayer]; }; + simpleaffy = derive2 { name="simpleaffy"; version="2.48.0"; sha256="1v16zgqz2kg943lcwdc6v2hwq4ngd0qw9611pv145ysd4bx6p92l"; depends=[affy Biobase BiocGenerics gcrma genefilter]; }; + simulatorZ = derive2 { name="simulatorZ"; version="1.6.0"; sha256="1bxpk4kigaymfgnf723s9pyfgpckhqfryjbz6b572jadf3swdjhc"; depends=[Biobase BiocGenerics CoxBoost gbm GenomicRanges Hmisc IRanges S4Vectors SummarizedExperiment survival]; }; + sincell = derive2 { name="sincell"; version="1.4.2"; sha256="0hdx2wzs6z5birxvin0xp0xvh0zrpmbwzxgralv2aghkv21ji5l6"; depends=[cluster entropy fastICA fields ggplot2 igraph MASS proxy Rcpp reshape2 Rtsne scatterplot3d statmod TSP]; }; + sizepower = derive2 { name="sizepower"; version="1.42.0"; sha256="0c17hs0yqqi92c1f27s7nh0vr1y6ak06mrv8m537w98cr659vlas"; depends=[]; }; + skewr = derive2 { name="skewr"; version="1.4.2"; sha256="0k11mvxkrgqx5gxzi2li7pdw44zdvdyb41yh0wjqxn413qj67jp2"; depends=[IlluminaHumanMethylation450kmanifest IRanges methylumi minfi mixsmsn RColorBrewer wateRmelon]; }; + snapCGH = derive2 { name="snapCGH"; version="1.42.0"; sha256="10fap32vzbjwpgvbq4i1jh8sca0bdcza9xzw7mmw8cnr20ddv388"; depends=[aCGH cluster DNAcopy GLAD limma tilingArray]; }; + snm = derive2 { name="snm"; version="1.20.0"; sha256="15nh0p79jpwdzd3l2yzc0kfg9gbl5y5cjzbvcvklpprhh11s787r"; depends=[corpcor lme4]; }; + snpStats = derive2 { name="snpStats"; version="1.22.0"; sha256="1hyznmdgjl96jf8aisa5nyjp4in74vn5nhipwxnc8g65j8qlmgdv"; depends=[BiocGenerics Matrix survival zlibbioc]; }; + soGGi = derive2 { name="soGGi"; version="1.4.4"; sha256="0wdg7p5rmfdhqy7294h99pf84l1hfpqmjkvmxkx87p1a8590a9nl"; depends=[BiocGenerics BiocParallel Biostrings chipseq GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges preprocessCore reshape2 Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; + spade = derive2 { name="spade"; version="1.20.0"; sha256="17x550ixg8f8gcjg3sc80v7bimzbvdi687m3znavkdpw03v7jcg9"; depends=[Biobase flowCore igraph Rclusterpp]; }; + specL = derive2 { name="specL"; version="1.6.2"; sha256="1kg6zhrd7fp07jl0njd54z4m4886drkks0b8k4w17vdxw2cpajc5"; depends=[DBI protViz Rcpp RSQLite seqinr]; }; + spikeLI = derive2 { name="spikeLI"; version="2.32.0"; sha256="0qk447fyrfj0ha0faf62i2h5hv8wnyfng42jkqcn8k391ga33w03"; depends=[]; }; + spkTools = derive2 { name="spkTools"; version="1.28.0"; sha256="1b76k0jp4dk2w53q8d536jfjznfdy1f2a8s44klm1rn3qw0nfp4c"; depends=[Biobase gtools RColorBrewer]; }; + spliceR = derive2 { name="spliceR"; version="1.14.0"; sha256="09c6h8xlfpfsnxvndf9zab9kiv4kfx4j3jqqm6f5ry25y1ixv49c"; depends=[cummeRbund GenomicRanges IRanges plyr RColorBrewer rtracklayer VennDiagram]; }; + spliceSites = derive2 { name="spliceSites"; version="1.20.0"; sha256="12j2mx7al7yxzhb3g6xy7v85vjipmfw0sa5nb3c3kh711r2485mj"; depends=[Biobase BiocGenerics Biostrings doBy IRanges rbamtools refGenome seqLogo]; }; + splicegear = derive2 { name="splicegear"; version="1.44.0"; sha256="02kzm95hnn1b9384qpndqxfrc9916i50rynpw52131rjzhy2qkqy"; depends=[annotate Biobase XML]; }; + splineTCDiffExpr = derive2 { name="splineTCDiffExpr"; version="0.99.4"; sha256="0b14hyrh2fa02yh2cvr2xjmrq81y46r6lrc6pzybi6mv3gpkdr6j"; depends=[Biobase FIs GeneNet GSEABase gtools igraph limma longitudinal]; }; + splineTimeR = derive2 { name="splineTimeR"; version="1.0.1"; sha256="1ham5hzfcv2ws9j8j07fzhvzij7fdnpnddd24sqb2w4l5p8sjj1z"; depends=[Biobase FIs GeneNet GSEABase gtools igraph limma longitudinal]; }; + splots = derive2 { name="splots"; version="1.38.0"; sha256="0pq9xgylc3qq3pzfizg25c3m6l64zvkc94xa5i8sm0v49161rjh9"; depends=[RColorBrewer]; }; + spotSegmentation = derive2 { name="spotSegmentation"; version="1.46.0"; sha256="1hbvxfcwpaz5gbkvnsnravd9zdghkl2kqwx6mhznjbzggjp5hf1i"; depends=[mclust]; }; + sscore = derive2 { name="sscore"; version="1.44.0"; sha256="14wl2chv9xrfn02s8dif0pa6nq41dbv5n9q2sjp1rgbknhs92l4f"; depends=[affy affyio]; }; + sscu = derive2 { name="sscu"; version="1.0.2"; sha256="0rflgvb8anzrv5y9rzm8aiaappafyjmmak39mvz6b3mm1a32zwkq"; depends=[BiocGenerics Biostrings seqinr]; }; + ssize = derive2 { name="ssize"; version="1.46.0"; sha256="161k421x32wp2qs705p7i7hqcf53sdmw5vllnwiqfidw62xagiya"; depends=[gdata xtable]; }; + ssviz = derive2 { name="ssviz"; version="1.6.2"; sha256="11w4y3fv5m9qxp998k9xm9w1vg0v34npqm9s05biv0qqxwgs9v36"; depends=[Biostrings ggplot2 RColorBrewer reshape Rsamtools]; }; + staRank = derive2 { name="staRank"; version="1.14.0"; sha256="1fn9m8q834v8540q8m2n9vfxdzqz2mbxb5k7mnjljf9ja07da9l8"; depends=[cellHTS2]; }; + stepNorm = derive2 { name="stepNorm"; version="1.44.0"; sha256="1l21pw9d2scp9jczf0d4mscvd5qjqkrn4maxx9k2l2kqz47bh1dc"; depends=[marray MASS]; }; + stepwiseCM = derive2 { name="stepwiseCM"; version="1.18.0"; sha256="1375hwx4zln7mnscfd6w7k4x6jc34m6mqs8fxmnihvkq4imhxd58"; depends=[Biobase e1071 glmpath MAclinical pamr penalized randomForest snowfall tspair]; }; + subSeq = derive2 { name="subSeq"; version="1.2.2"; sha256="04qg83x7cmjsnzg925jx8aw83gpzynkqdgxy4n44rxqspw922f11"; depends=[Biobase data_table digest dplyr ggplot2 magrittr qvalue tidyr]; }; + supraHex = derive2 { name="supraHex"; version="1.10.0"; sha256="1kzkkidlr034m0sgyb32zia0p47gi52l6ki7s88559h7gx5d7bg1"; depends=[ape hexbin MASS]; }; + survcomp = derive2 { name="survcomp"; version="1.22.0"; sha256="0l6plsjfbpx0lxkyscfnbykinjcijp1bwbrqn4i76y003g91b4yz"; depends=[bootstrap ipred KernSmooth prodlim rmeta SuppDists survival survivalROC]; }; + sva = derive2 { name="sva"; version="3.20.0"; sha256="0jqa4rdd0cd546sc1dbsq1lrm3kqcfym77xr7rsmrpc12yp85xdv"; depends=[genefilter mgcv]; }; + switchBox = derive2 { name="switchBox"; version="1.6.0"; sha256="0ys69bh12b9idni67v1phfm1nik9z8izpix3az4xhy253gsb3idz"; depends=[]; }; + synapter = derive2 { name="synapter"; version="1.14.2"; sha256="1wql8q8fbkl16g1xczrbcd68g41c35rfyqyrb6cj250axjl5x2q4"; depends=[Biobase BiocParallel Biostrings cleaver hwriter knitr lattice MSnbase multtest qvalue RColorBrewer]; }; + synlet = derive2 { name="synlet"; version="1.2.2"; sha256="1rgsfxjkfv546c285cwp740gcglfjg8sbf0hw9v1dmqa16fy3pss"; depends=[doBy dplyr ggplot2 magrittr RankProd RColorBrewer reshape2]; }; + systemPipeR = derive2 { name="systemPipeR"; version="1.6.4"; sha256="0s2g46a5d5bvx45i3cgmib48wf8hrniyladhm0f7kgcbfx57248m"; depends=[annotate BatchJobs BiocGenerics Biostrings DESeq2 edgeR GenomicFeatures GenomicRanges ggplot2 GO_db GOstats limma pheatmap rjson Rsamtools ShortRead SummarizedExperiment VariantAnnotation]; }; + tRanslatome = derive2 { name="tRanslatome"; version="1.10.0"; sha256="0dylpkmz91gvl6zsi501yqg5kf0sagb4f6bcdb9gl68r3vbmkxnm"; depends=[anota Biobase DESeq edgeR GOSemSim gplots Heatplus limma org_Hs_eg_db plotrix RankProd samr sigPathway topGO]; }; + ternarynet = derive2 { name="ternarynet"; version="1.16.0"; sha256="0xzvvhgmbka28ka6q2inkfgc3lgi6007apndw6gb33548by7l30p"; depends=[igraph]; }; + tigre = derive2 { name="tigre"; version="1.26.0"; sha256="0k9sjq3qxji7zsgjmy8zp0744zw17w86i2rf7yqapw2khgk80pdh"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI gplots RSQLite]; }; + tilingArray = derive2 { name="tilingArray"; version="1.50.0"; sha256="03m6xcrs80a9kc63wawrnynxbydr54qfc2azfjj28qjb38cij792"; depends=[affy Biobase genefilter pixmap RColorBrewer strucchange vsn]; }; + timecourse = derive2 { name="timecourse"; version="1.44.0"; sha256="09m2laz25wmlch2r657q97ii1gryhs04yva8ym9a2z7dpypr4hpp"; depends=[Biobase limma marray MASS]; }; + tkWidgets = derive2 { name="tkWidgets"; version="1.50.0"; sha256="1dazx95p1751kzdf0k8a1kbbbq6d258ga53j71gnbzskg2pmr3s9"; depends=[DynDoc widgetTools]; }; + tofsims = derive2 { name="tofsims"; version="1.0.2"; sha256="0yyxwhhj6nqfxclzp05dsm8ydpvcxld73rd2qnq2xplffx9db45v"; depends=[ALS ChemometricsWithR KernSmooth ProtGenerics Rcpp RcppArmadillo signal]; }; + topGO = derive2 { name="topGO"; version="2.24.0"; sha256="1p4vsl32qhjw15yv9ym01ni63gjg73jaghlf17wc4zfn3iaz2zar"; depends=[AnnotationDbi Biobase BiocGenerics DBI GO_db graph lattice matrixStats SparseM]; }; + trackViewer = derive2 { name="trackViewer"; version="1.8.4"; sha256="0qzqzqqpajdv8srr59i7qxwn90vf0xdshnlchmn2v6k4949n3jcj"; depends=[AnnotationDbi GenomicAlignments GenomicFeatures GenomicRanges grImport Gviz IRanges pbapply Rsamtools rtracklayer scales]; }; + tracktables = derive2 { name="tracktables"; version="1.6.2"; sha256="1mx924d22w794gx3n5xdl711ajyxpmfwfx1x496cbcy9fqbc38sm"; depends=[GenomicRanges IRanges RColorBrewer Rsamtools stringr tractor_base XML XVector]; }; + transcriptR = derive2 { name="transcriptR"; version="1.0.2"; sha256="08jbwajdbjx8jj7snfihyf4nzh72af4cj4grgvv5j0lqymvkziv6"; depends=[BiocGenerics caret chipseq e1071 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges pROC reshape2 Rsamtools rtracklayer S4Vectors]; }; + traseR = derive2 { name="traseR"; version="1.2.0"; sha256="1mpvb38zg13b28s9fp3lm1m4gv002kaq7fqgxjnhk743bs4zqwbp"; depends=[BSgenome_Hsapiens_UCSC_hg19 GenomicRanges IRanges]; }; + triform = derive2 { name="triform"; version="1.14.0"; sha256="1rfrqa5k2sfsyxpjjhs9scjgz1qzqgks13xxppz64sdlpjgrr8zw"; depends=[BiocGenerics IRanges yaml]; }; + trigger = derive2 { name="trigger"; version="1.18.0"; sha256="1vzp9xlq2i6g659i4v1bbmh396lqwac3iwzx10kxjadzsp3kmd30"; depends=[corpcor qtl qvalue sva]; }; + trio = derive2 { name="trio"; version="3.10.0"; sha256="07a20anzcg98nvbwkb1y3wna7kp4wwh2r994gnajl9lpp4ya8v4m"; depends=[]; }; + triplex = derive2 { name="triplex"; version="1.12.0"; sha256="0562c7i9y3ajb6krqxfg2l7hmv8x9qrd7jqm1pkv7mb507yw3ijr"; depends=[Biostrings GenomicRanges IRanges S4Vectors XVector]; }; + tspair = derive2 { name="tspair"; version="1.30.0"; sha256="1di6h6hm5bjl7j3hnnblfi042i0pj6rlzigprbz41spppassvg28"; depends=[Biobase]; }; + tweeDEseq = derive2 { name="tweeDEseq"; version="1.18.0"; sha256="1i15pjvyz1idzam54d93f5i0693gjwqnnr97a6i2k7mnng859ik1"; depends=[cqn edgeR limma MASS]; }; + twilight = derive2 { name="twilight"; version="1.48.0"; sha256="1mz8967fkjkyv75j6ahxrygvlwi1cmjiag4vd9gi6jrqqbpj0hdg"; depends=[Biobase]; }; + tximport = derive2 { name="tximport"; version="1.0.3"; sha256="14j85aw1hhszaajnk7pj02bsj0id2y70ja94njxcr3j3rax1ngg0"; depends=[]; }; + unifiedWMWqPCR = derive2 { name="unifiedWMWqPCR"; version="1.8.0"; sha256="1fa5nmdfg52kppvxri08x97zb03c5fq2mz78jpcjaryhcz1jcpr8"; depends=[BiocGenerics HTqPCR]; }; + variancePartition = derive2 { name="variancePartition"; version="1.2.11"; sha256="01525cbxgh9q4dnwn8ynrc1ixg9b98k7yn59svj6pdxmi2b9a58q"; depends=[Biobase colorRamps doParallel foreach ggplot2 gplots iterators limma lme4 MASS pbkrtest reshape2]; }; + vbmp = derive2 { name="vbmp"; version="1.40.0"; sha256="0b6dw8z2lvzlfafc0p38x0skwgayafznvcwc813rkb2jcfac3q5h"; depends=[]; }; + viper = derive2 { name="viper"; version="1.7.4"; sha256="12hyvy6dz67r3aybg4cbkzayb3j4vm0vi5ib2y9lq4195fp6ffxr"; depends=[Biobase e1071 KernSmooth mixtools]; }; + vsn = derive2 { name="vsn"; version="3.40.0"; sha256="0cqx7kar7ihhbqdk37zhj6w5g1nw04l10vwnw2gxwm2y4229skh4"; depends=[affy Biobase ggplot2 hexbin lattice limma]; }; + vtpnet = derive2 { name="vtpnet"; version="0.12.0"; sha256="0yq4h1pv7vkhwmk1vq0nahzyw6wnbvhlmw0rgggzbdc0irp99yj7"; depends=[doParallel foreach GenomicRanges graph gwascat]; }; + wateRmelon = derive2 { name="wateRmelon"; version="1.17.0"; sha256="1xhqv5hrxivw924snl1nb0biir39mzwc3m8d9qczhn52ds04wsn1"; depends=[Biobase IlluminaHumanMethylation450kanno_ilmn12_hg19 illuminaio limma lumi matrixStats methylumi ROC]; }; + wavClusteR = derive2 { name="wavClusteR"; version="2.6.2"; sha256="0dbjkpajs4src5kgymin7b4h4yciksa112s52fm116mfll0g1rxl"; depends=[BiocGenerics Biostrings foreach GenomicFeatures GenomicRanges ggplot2 Hmisc IRanges mclust Rsamtools rtracklayer S4Vectors seqinr stringr wmtsa]; }; + waveTiling = derive2 { name="waveTiling"; version="1.14.0"; sha256="1yfvzb0k5b495460b1k2229h3qcx7gva48lc419r2y9dlnajii3d"; depends=[affy Biobase Biostrings GenomeGraphs GenomicRanges IRanges oligo oligoClasses preprocessCore waveslim]; }; + weaver = derive2 { name="weaver"; version="1.38.0"; sha256="1g6796sw321la3rh4s28xzfv5wr91f4xva965sccl5l4vxqs5ccr"; depends=[codetools digest]; }; + webbioc = derive2 { name="webbioc"; version="1.44.0"; sha256="0wd6xdnp3qcinj7sgl1hizl674v65n9xjbw0haf1xyrlijakpn7h"; depends=[affy annaffy Biobase BiocInstaller gcrma multtest qvalue vsn]; }; + widgetTools = derive2 { name="widgetTools"; version="1.50.0"; sha256="191agm9c0g43wbncya8dnrgssx5s84i5w147na84g37r6b9cn67y"; depends=[]; }; + xcms = derive2 { name="xcms"; version="1.48.0"; sha256="0xynzbvsknyyh5zdnh8mgs7rjf53m3fkhwqqi116lscqmf89scda"; depends=[Biobase BiocGenerics lattice mzR ProtGenerics RColorBrewer]; }; + xmapbridge = derive2 { name="xmapbridge"; version="1.30.0"; sha256="17nccdcnwvi4vj2ykc0adq0018prfxpkzk78s315gx2l0ywkzmv4"; depends=[]; }; + xps = derive2 { name="xps"; version="1.32.0"; sha256="0clajv5qpv6z9hhq4ns5gjys1zb5k1r6bngpjfm0g2k8alaj82rk"; depends=[]; }; + yaqcaffy = derive2 { name="yaqcaffy"; version="1.32.0"; sha256="16sif5lsfczrl811g7237yg5pw8am2q7m9yk7zfkh3l07lr75zni"; depends=[simpleaffy]; }; + zlibbioc = derive2 { name="zlibbioc"; version="1.18.0"; sha256="0m8l7zpx1l3qsk73k3ibkxxzzff938x3qhnwki1ymf3cnsg8cb36"; depends=[]; }; } diff --git a/pkgs/development/r-modules/cran-packages.nix b/pkgs/development/r-modules/cran-packages.nix index 92f79b7a36ac..b2cb8857db77 100644 --- a/pkgs/development/r-modules/cran-packages.nix +++ b/pkgs/development/r-modules/cran-packages.nix @@ -4,527 +4,675 @@ # Rscript generate-r-packages.R cran >new && mv new cran-packages.nix { self, derive }: -let derive2 = derive { snapshot = "2016-03-23"; }; +let derive2 = derive { snapshot = "2017-02-23"; }; in with self; { A3 = derive2 { name="A3"; version="1.0.0"; sha256="017hq9pjsv1h9i7cqk5cfx27as54shlhdsdvr6jkhb8jfkpdb6cw"; depends=[pbapply xtable]; }; - ABCanalysis = derive2 { name="ABCanalysis"; version="1.1.0"; sha256="09s38xr6cig88v1nb8a192yc19rnhnqsfzazgfa257c7h84l0g9q"; depends=[Hmisc plotrix]; }; - ABCoptim = derive2 { name="ABCoptim"; version="0.13.11"; sha256="1j2pbfl5g9x71gq9f7vg6wznsds8sn8dj3q2h5fhjcv58di3gjhl"; depends=[]; }; + ABC_RAP = derive2 { name="ABC.RAP"; version="0.9.0"; sha256="1kdspln17v0krvahcd55vib4dv5azp60b3r1zf489x10qqbp1mxk"; depends=[]; }; + ABCanalysis = derive2 { name="ABCanalysis"; version="1.1.2"; sha256="1z7m8j6zqai7kg5b00wmv7hjndpb29s6819bshwrqc7z0vz71491"; depends=[plotrix]; }; + ABCoptim = derive2 { name="ABCoptim"; version="0.14.0"; sha256="0nqnflidknwxj4bzql486cs4fi51iwyw73b5sdf26s705hkknhj0"; depends=[Rcpp]; }; ABCp2 = derive2 { name="ABCp2"; version="1.2"; sha256="1s2skkxpzss7c29i8600psgrp0hl46jcrxqrmy2b4db8hc0kcnbx"; depends=[MASS]; }; ABHgenotypeR = derive2 { name="ABHgenotypeR"; version="1.0.1"; sha256="08cpmnaaxsm5c5bjifnfxdlvg5inrf13biqpcl2yq5zpqjmiki0l"; depends=[ggplot2 reshape2]; }; ACA = derive2 { name="ACA"; version="1.0"; sha256="0z4wz85iv5k5vw29m6xfh2v96shv314nbxkv3v3yhl77br4bmj4q"; depends=[]; }; ACCLMA = derive2 { name="ACCLMA"; version="1.0"; sha256="1na27sp18fq12gp6vxgqw1ffsz2yi1d8xvrxbrzx5g1kqxrayy0v"; depends=[]; }; ACD = derive2 { name="ACD"; version="1.5.3"; sha256="1a67bi3hklq8nlc50r0qnyr4k7m9kpvijy8sqqpm54by5hsysfd6"; depends=[]; }; - ACDm = derive2 { name="ACDm"; version="1.0.3"; sha256="1gqqm9lyc9pmqxj21a1mnf29jpq5aqsfny5wzlp2d8g49dc5hqri"; depends=[dplyr ggplot2 plyr Rsolnp zoo]; }; - ACEt = derive2 { name="ACEt"; version="1.4"; sha256="1837jindb5bffp7gxp66ffx4z6ardm5g9axm3d42vvbm6m67klc4"; depends=[BH MASS Rcpp RcppArmadillo]; }; + ACDm = derive2 { name="ACDm"; version="1.0.4"; sha256="0b4f02ga5ra66mbrm79g0bnlzmii82rks9kmxixxqgf18yhlyjil"; depends=[dplyr ggplot2 plyr Rsolnp zoo]; }; + ACEt = derive2 { name="ACEt"; version="1.7.1"; sha256="1h0lfzz3ydkr8idbsqhddcwsc0q7rschgypf4vb4v62f636fxw9b"; depends=[BH MASS Rcpp RcppArmadillo]; }; ACNE = derive2 { name="ACNE"; version="0.8.1"; sha256="0kzapsalzw6jsi990qicp4glijh5ddnfimsg5pidgbwxg4i05grl"; depends=[aroma_affymetrix aroma_core MASS matrixStats R_filesets R_methodsS3 R_oo R_utils]; }; - ACSNMineR = derive2 { name="ACSNMineR"; version="0.16.01.29"; sha256="1b1243wkncanm1blkqzicjgzb576vzcg4iwinsgn2xqr7f264amf"; depends=[ggplot2 gridExtra scales]; }; + ACSNMineR = derive2 { name="ACSNMineR"; version="0.16.8.25"; sha256="0gh604s8qall6zfjlwcg2ilxjvz08dplf9k5g47idhv43scm748l"; depends=[ggplot2 gridExtra scales]; }; ACSWR = derive2 { name="ACSWR"; version="1.0"; sha256="195vjrkang5cl7gwsna0aq4p0h4jym9xg9yh94bnf8vq6wf8j83n"; depends=[MASS]; }; - ACTCD = derive2 { name="ACTCD"; version="1.0-0"; sha256="0zn8f6l5vmn4w1lqjnpcxvfbr2fhwbhdjx4144h3bk71bk9raavl"; depends=[R_methodsS3]; }; - ADDT = derive2 { name="ADDT"; version="1.0"; sha256="1jx7rxi0yfn34pf3cf9zpf434rapgn5qn2mn5rkq5lysr3kwdw91"; depends=[]; }; + ACTCD = derive2 { name="ACTCD"; version="1.1-0"; sha256="15l70diy1x2pfyv8miki76frnk3f33qfxcxafh6cp8zwc6gmr0m4"; depends=[R_methodsS3]; }; + ADCT = derive2 { name="ADCT"; version="0.1.0"; sha256="1glf83ydx4v3ld8c4gb9h3jk6srd054bis5l8k57p1ba4fnqnnpp"; depends=[mvtnorm]; }; + ADDT = derive2 { name="ADDT"; version="2.0"; sha256="044bb1jw2m8vwk5q8l7rlz4kqphjvy8i9d59rjg0k5q5l9vczfrp"; depends=[coneproj Matrix nlme]; }; ADGofTest = derive2 { name="ADGofTest"; version="0.3"; sha256="0ik817qzqp6kfbckjp1z7srlma0w6z2zcwykh0jdiv7nahwk3ncw"; depends=[]; }; ADM3 = derive2 { name="ADM3"; version="1.3"; sha256="1hg9wjdhckilqd13dr4cim4j6jsh2sdwm18i3pfmfdj8cyswm3h0"; depends=[]; }; ADMMnet = derive2 { name="ADMMnet"; version="0.1"; sha256="15f1zhgv7xai954qz2ahj4kpxyvr2svxpmybz7j43bhjpkq72dmq"; depends=[Matrix Rcpp RcppEigen]; }; - ADPclust = derive2 { name="ADPclust"; version="0.6.5"; sha256="0ni8hkpn11cqrm56w2l4x7fwhw7lls3msf0g8bd62nkwzygqzzrn"; depends=[cluster dplyr fields knitr]; }; - AEDForecasting = derive2 { name="AEDForecasting"; version="0.10.0"; sha256="080qg8s616nx1pj7bdpg3ify2qm3l0gni40nx1xdh81920vj8n7y"; depends=[changepoint forecast signal]; }; - AER = derive2 { name="AER"; version="1.2-4"; sha256="0cfhnh6ijwvbywk6falfq852jgx969v35j2l1q3cghwj9yggapbh"; depends=[car Formula lmtest sandwich survival zoo]; }; - AF = derive2 { name="AF"; version="0.1.2"; sha256="18bw6c9nlcqcxib4mzhxsjqyjj29xqqvpw668jg2ssqkdphnvzkl"; depends=[data_table drgee survival]; }; + ADPclust = derive2 { name="ADPclust"; version="0.7"; sha256="0s47cpsjykn7imsssa9w9b6g9d1sz2yah78yqzxmh0i3lqd757c1"; depends=[cluster dplyr fields knitr]; }; + AEDForecasting = derive2 { name="AEDForecasting"; version="0.20.0"; sha256="16q2sn5zzvysyy3r32jnr21pbdkkn0k0sbarni6fdkx7pj27yijn"; depends=[changepoint forecast signal]; }; + AER = derive2 { name="AER"; version="1.2-5"; sha256="0qksj91h1c5kaci0w7q1n6780669di146ll5wnbjppnkz57z237g"; depends=[car Formula lmtest sandwich survival zoo]; }; + AF = derive2 { name="AF"; version="0.1.4"; sha256="1ych5b2bin65lk415l8rhql2cpma3djnxvdi8ja1hgd9absm7j04"; depends=[data_table drgee stdReg survival]; }; AFLPsim = derive2 { name="AFLPsim"; version="0.4-2"; sha256="0bbbvv81nxqp5gc4hdhk0hyhb4n8f9w83kf21cgmqhy9cqnyr4s8"; depends=[adegenet introgress]; }; - AFM = derive2 { name="AFM"; version="1.2.0"; sha256="070jd8b8l4f94zp83i7w69fbym0p2sc4vdlfxzzp5ih438i1p0wi"; depends=[data_table fftwtools fractaldim ggplot2 gridExtra gstat igraph moments plyr png pracma rgl rglwidget shiny shinyjs sp stringr]; }; + AFM = derive2 { name="AFM"; version="1.2.2"; sha256="132zbxim3cbyxhv27l9i3jyhf5c47ckzsg4qndpwbyjhd0p9x7qh"; depends=[data_table dbscan fftwtools fractaldim ggplot2 gridExtra gstat igraph moments plyr png pracma rgl scales shiny shinyjs sp stringr]; }; AGD = derive2 { name="AGD"; version="0.35"; sha256="1dk8m3zqvapwhz0677d3b2cbrin14p9adn5annzgjrxgw7ms4mg0"; depends=[gamlss gamlss_dist]; }; - AGSDest = derive2 { name="AGSDest"; version="2.3"; sha256="1g8z7ba70zs4i8cb48iwf4iy1q1l76cpiixiac8fixjf1c7a9hxz"; depends=[ldbounds]; }; - AHR = derive2 { name="AHR"; version="1.3"; sha256="0i1dqv1prb8iir1rykbhfsl99x05cl582z47wqr7mwkkqf826x9g"; depends=[etm MASS Rcpp RcppArmadillo survival]; }; - AICcmodavg = derive2 { name="AICcmodavg"; version="2.0-4"; sha256="08ry3m4a464gw2j1n528p2fim4flnfy4gbyb1yald001499wdm5v"; depends=[lattice MASS Matrix nlme survival unmarked VGAM xtable]; }; - AID = derive2 { name="AID"; version="1.5"; sha256="0fpgq2ahl0mdj0sb0p39z2ksslsiwm3hma8d09jmggi3yjbrgqq7"; depends=[MASS nortest tseries]; }; + AGSDest = derive2 { name="AGSDest"; version="2.3.1"; sha256="10jakc2qs5gnbp0g4k05isy0ii73ric50gmwkbb1khf9x0b5v6dg"; depends=[ldbounds]; }; + AHR = derive2 { name="AHR"; version="1.4.2"; sha256="15khncbbnpbvj6rcn6rklzhv5a0mmfyjljv77bsx96zfis7mk2d7"; depends=[etm MASS Rcpp RcppArmadillo survival]; }; + AICcmodavg = derive2 { name="AICcmodavg"; version="2.1-0"; sha256="0zksb2qxb1q054kwg4acp94hxqiasd0yw1bkllp2r38640bvlj3b"; depends=[lattice MASS Matrix nlme survival unmarked VGAM xtable]; }; + AID = derive2 { name="AID"; version="1.7"; sha256="0c0057rp10aav41z7ilppbv8gsqf8ik2srygr5wx95b7hl1a4cvb"; depends=[MASS nortest tseries]; }; + AIG = derive2 { name="AIG"; version="0.1.1"; sha256="0llsfx6nfkhz37vdqd1mjbv0sh3v2q9drk7dml5qzdxkqxbbcyi6"; depends=[dplyr mgcv]; }; AIM = derive2 { name="AIM"; version="1.01"; sha256="11lkfilxk265a7jkc1wq5xlgxa56xhg302f1q9xb7gmjnzdigb21"; depends=[survival]; }; - ALDqr = derive2 { name="ALDqr"; version="0.5"; sha256="0294d6cjfl5m63jhrv4rbh7npwrbmmw5101jz5bbwihhj94qcxp9"; depends=[HyperbolicDist]; }; + ALA4R = derive2 { name="ALA4R"; version="1.5.6"; sha256="0fj5y6z179glhc2jj3ksd5w29xmlqm71n23hp1vynrza70fz0gna"; depends=[assertthat digest httr jsonlite plyr RCurl sp stringr wellknown]; }; + ALDqr = derive2 { name="ALDqr"; version="1.0"; sha256="0gk8hxh4p0fi47sf1zsvvxxbzp38vzk60wh8hmc63phnjab6qkv4"; depends=[HyperbolicDist sn]; }; ALKr = derive2 { name="ALKr"; version="0.5.3.1"; sha256="09df3vx2q0sn8fwz2cc9lckzwrf2hgbglzyn376d6nkrm6gq792a"; depends=[MASS Rcpp]; }; ALS = derive2 { name="ALS"; version="0.0.6"; sha256="1swrn39vy50fazkpf97r7c542gkj6mlvy8gmcxllg7mf2mqx546a"; depends=[Iso nnls]; }; ALSCPC = derive2 { name="ALSCPC"; version="1.0"; sha256="0ippxzq5qwb9dnpvm1kxhc0fxh83rs9ny5rcvd30w2bp632q9qdx"; depends=[]; }; + ALSM = derive2 { name="ALSM"; version="0.1.9"; sha256="11lj493wpf2hkk6cim93qad9ikqq1ni5i65xbpzj1qwq8zv7bdzk"; depends=[car leaps SuppDists]; }; ALTopt = derive2 { name="ALTopt"; version="0.1.1"; sha256="0frpnycnljz6r24cg4z99ivm3rbg9j1nxfkhw18vbrb7gcl1hqj6"; depends=[cubature lattice]; }; AMAP_Seq = derive2 { name="AMAP.Seq"; version="1.0"; sha256="0z0rrzps6rm58k4m1ybg77s3w05m5zfya4x8ril78ksxsjwi3636"; depends=[]; }; - AMCP = derive2 { name="AMCP"; version="0.0.2"; sha256="1ljsb2p7f1cq6qkzcd88a43qcd61myf5xirqcjbjs8rkmj49mg4l"; depends=[]; }; + AMCP = derive2 { name="AMCP"; version="0.0.4"; sha256="051xvnr4zc25w00kh4gkffgigmhmcbqpwh9654jv37glr8ip2v3l"; depends=[]; }; AMGET = derive2 { name="AMGET"; version="1.0"; sha256="18wdzzg5wr7akbd1iasa4mvmy44fb2n5gpghwcrx80knnicy3dxq"; depends=[]; }; + AMModels = derive2 { name="AMModels"; version="0.1.2"; sha256="0503vwagrlg14f8n15p7jsz25mvmjinr1cyns24hpp4y2fgbc56s"; depends=[unmarked]; }; AMOEBA = derive2 { name="AMOEBA"; version="1.1"; sha256="1npzh3rpfnxd4r1pj1hm214sfgbw4wmq4ws093lnl7pvsl0q37xn"; depends=[rlecuyer snowfall spdep]; }; AMORE = derive2 { name="AMORE"; version="0.2-15"; sha256="00zfqcsah2353mrhqkv8bbh24l8gaxk4y78icr9kxy4pqb2988yz"; depends=[]; }; + ANLP = derive2 { name="ANLP"; version="1.3"; sha256="1m1jnfaqny6qprgyk4f3naan5i5cildawv322h6mc25nypwl12m4"; depends=[dplyr qdap RWeka tm]; }; ANOM = derive2 { name="ANOM"; version="0.4.3"; sha256="0ayz5jl7pkz07n0dv4q99n3b47dwxj2ry6x4zc5xz5mgs5pgv2nl"; depends=[ggplot2 MCPAN multcomp nparcomp SimComp]; }; - APSIM = derive2 { name="APSIM"; version="0.8.3"; sha256="0c4ywixbjc3bdckaqh3mcwb8p0jf65yyd8x0rdqwvj9j3b6d7kj3"; depends=[data_table lubridate plyr sirad stringr]; }; + APSIM = derive2 { name="APSIM"; version="0.9.1"; sha256="0ws9zl2c5m58j0rpbhkpd1rs0pasd4fazd25xw7b3s9b738clfwa"; depends=[data_table lubridate plyr RSQLite sirad stringr]; }; APSIMBatch = derive2 { name="APSIMBatch"; version="0.1.0.2374"; sha256="0j44ijq1v1k60lka9nmw8m1jfjw7pidny9bvswqy5v82gzmwl29d"; depends=[]; }; + APfun = derive2 { name="APfun"; version="0.1.0"; sha256="0iq008pq7drkl3d1m5qrhpqmmpvzxcbknax57lfzh5nxk657zx03"; depends=[]; }; + APtools = derive2 { name="APtools"; version="3.0"; sha256="0v5xgznc8hvw3gid8x5chksc62zpwbx34qsh64sv7d1kqmh5w26j"; depends=[survival]; }; AR1seg = derive2 { name="AR1seg"; version="1.0"; sha256="0v9adx5wj9r4jwl3bqqmj0byiqfp585jz013qfqrq601wj8v4zi3"; depends=[Segmentor3IsBack]; }; + ARCensReg = derive2 { name="ARCensReg"; version="2.1"; sha256="05zjk1wxqfigzg80lvx1940a059jfdr9zbzgzmz2n01glj1lvj63"; depends=[msm mvtnorm numDeriv tmvtnorm]; }; ARPobservation = derive2 { name="ARPobservation"; version="1.1"; sha256="1cdhn11jf1nf03jyvs17ygmjq9pb5rvmyyrq9fp7ifmvcgbkwsms"; depends=[]; }; ART = derive2 { name="ART"; version="1.0"; sha256="186w1ivj5v3h906crl953qxgai5wiznaih83dgvwgnmabs9p1wvk"; depends=[car]; }; ARTIVA = derive2 { name="ARTIVA"; version="1.2.3"; sha256="1jdvsslc8parz7wibcv51fx62brl2mc6i482hz43j1npsms2z1hl"; depends=[gplots igraph MASS]; }; ARTP = derive2 { name="ARTP"; version="2.0.4"; sha256="1f6ay9lyaqsc33b0larb8v6imp5adaycya84wif2sg32rv4gx3yl"; depends=[]; }; - ARTP2 = derive2 { name="ARTP2"; version="0.9.22"; sha256="0vhnhf72x1af77lq8rnqq98hpv5l57by2qm1zxpjvpgpqa5s49ak"; depends=[data_table Formula]; }; - ARTool = derive2 { name="ARTool"; version="0.10.0"; sha256="0y36lghpnhz8fb0gsq4h8mq8y79b2k22wgr7rxj0n12y55xkj028"; depends=[car dplyr lme4 magrittr plyr]; }; - ASMap = derive2 { name="ASMap"; version="0.4-5"; sha256="1hrvxkhmycqldah3j1wkja0g7mdx24lyc6gp2x1pnx9fqjanwfy2"; depends=[fields gtools lattice qtl RColorBrewer]; }; + ARTP2 = derive2 { name="ARTP2"; version="0.9.30.1"; sha256="1jn1ai19s1jrrhl6nm7miw46l27jr0rgy7gy54ajbrrbdd4j70fy"; depends=[data_table Formula]; }; + ARTool = derive2 { name="ARTool"; version="0.10.4"; sha256="1malrjv4myk9nj3dndgpzscfhky4y6lj8xbfg8h2b29g7s2k846q"; depends=[car dplyr lme4 magrittr plyr]; }; + ASMap = derive2 { name="ASMap"; version="0.4-7"; sha256="1xsgz05ck60aflnnbhwwbrnizwq92g5ickdnx39fqlj6mpxircw4"; depends=[fields gtools lattice qtl RColorBrewer]; }; ASPBay = derive2 { name="ASPBay"; version="1.2"; sha256="0b1qpyvmj7z10ixrmdxp42bj9s72c1l9rihzmv9p58f12a5aznjz"; depends=[hexbin Rcpp RcppArmadillo]; }; + ASSISTant = derive2 { name="ASSISTant"; version="1.2-3"; sha256="072lmvmdi5yfyfda42vs556ciwj2rnka02isnknk6czir3947nck"; depends=[mvtnorm R6]; }; ATE = derive2 { name="ATE"; version="0.2.0"; sha256="1i46ivb7q61kq11z9v1rlnwad914nsdjcz9bagqx17vjk160mc0a"; depends=[]; }; ATmet = derive2 { name="ATmet"; version="1.2"; sha256="047ibxxf5si45zw22zy8a1kpj36q0pd3bsmxwvn0dhf4h65ah0zz"; depends=[DiceDesign lhs metRology msm sensitivity]; }; AUC = derive2 { name="AUC"; version="0.3.0"; sha256="0ripcib2qz0m7rgr1kiz68nx8f6p408l1ww7j78ljqik7p3g41g7"; depends=[]; }; AUCRF = derive2 { name="AUCRF"; version="1.1"; sha256="00d7jcg2dyvf7sc9w7vxxd85m7nsbcmfqsavrv236vxfpfc9yn7i"; depends=[randomForest]; }; - AbsFilterGSEA = derive2 { name="AbsFilterGSEA"; version="1.0"; sha256="0b6867rfac7kglgigr0gc237sizvbbhg3cymjsjrr2pklkqfp1bn"; depends=[Rcpp RcppArmadillo]; }; - AcceptanceSampling = derive2 { name="AcceptanceSampling"; version="1.0-4"; sha256="0nvbh4cx0vcsqzs7j6vs6pc6yxb4i0fbjfajdnq6fvnv12m9sz41"; depends=[]; }; + AUtests = derive2 { name="AUtests"; version="0.98"; sha256="0m2nl55qfwfzlf92f43b9q75xqvrlx7qzcz6qlnjbjcr80s0qj9q"; depends=[logistf]; }; + AWR = derive2 { name="AWR"; version="1.11.89"; sha256="0mg48720ny2a28yfwqx5p4r7g7rbjbzzgbkd2m31hfyz4vnrsr4v"; depends=[rJava]; }; + AWR_KMS = derive2 { name="AWR.KMS"; version="0.1"; sha256="00aqhyqlncsv0vfcyhaazxaclwm63v5kscssash7529avdwd4gqg"; depends=[AWR jsonlite rJava]; }; + AbSim = derive2 { name="AbSim"; version="0.1"; sha256="0z3ghz0wmf2z4s2mnadiacir5frzlw77gca8fkvdh8rv5pwyy38c"; depends=[ape poweRlaw]; }; + AbsFilterGSEA = derive2 { name="AbsFilterGSEA"; version="1.5"; sha256="0071llj6xqsj495nlnvhzsqbrvls7fs3xscng537332xinmfhwdr"; depends=[DESeq limma Rcpp RcppArmadillo]; }; + AcceptanceSampling = derive2 { name="AcceptanceSampling"; version="1.0-5"; sha256="18krmmyn8pn11aqd81kbvka68lnd36mnpdh7p3pz9r4m4vjj007x"; depends=[]; }; + AcrossTic = derive2 { name="AcrossTic"; version="1.0-3"; sha256="03180h79jhjd66ibrnsfp3yyp2jlfysp7cymw46phzj2palghsc0"; depends=[lpSolve treeClust]; }; Actigraphy = derive2 { name="Actigraphy"; version="1.3.2"; sha256="0y0ccmxhdfhdmi4k6pbfvnqknkqbgvfsf2qf7z7rc4xpfgym6574"; depends=[fda SDMTools]; }; ActuDistns = derive2 { name="ActuDistns"; version="3.0"; sha256="04rff9czcgac80clpv32a1dl0jbyvfsa7wqxyywgk99w672x50i2"; depends=[actuar hypergeo reliaR]; }; - AdMit = derive2 { name="AdMit"; version="2.0.1"; sha256="0bqzq2pf5449qyr8ff5d3sq0lbsph29ppv6zzf1rbjz06sc5d6ff"; depends=[mvtnorm]; }; + AdMit = derive2 { name="AdMit"; version="2.1.3"; sha256="150zjxl56axhpgm25hzyhwwc5g77pkgi291d2v56zbjjqycfz2v8"; depends=[mvtnorm]; }; AdapEnetClass = derive2 { name="AdapEnetClass"; version="1.2"; sha256="01k3mj4g1ckbng7wkzzn9h0k9yf01cpnnkly0sjda574c5jhj0rc"; depends=[glmnet imputeYn lars quadprog]; }; AdaptFit = derive2 { name="AdaptFit"; version="0.2-2"; sha256="124lj1sq5cbp35z4ybkc7ci3fi6pgf8pc5k9mpqmyb6dj870q836"; depends=[cluster MASS nlme SemiPar]; }; AdaptFitOS = derive2 { name="AdaptFitOS"; version="0.62"; sha256="0cxl58by9mfd6hf4hb2d5qnm0pgb0gplgg7mm0qhvckvghjpb00q"; depends=[MASS mgcv nlme SemiPar]; }; - AdaptGauss = derive2 { name="AdaptGauss"; version="1.2.0"; sha256="18kqqhzy33ivz8g9yj465jb6ih12rzgq090w2n3pgsrckflz11zf"; depends=[caTools ggplot2 mclust shiny]; }; + AdaptGauss = derive2 { name="AdaptGauss"; version="1.2.4"; sha256="0idqh1g4aypak1hm04vz2p3yklw6gbryjgm735gl46bzhlzlyyfv"; depends=[caTools ggplot2 mclust shiny]; }; AdaptiveSparsity = derive2 { name="AdaptiveSparsity"; version="1.4"; sha256="1az7isvalf3kmdiycrfl6s9k9xqk22k1mc6rh8v0jmcz402qyq8z"; depends=[Rcpp RcppArmadillo]; }; - AdequacyModel = derive2 { name="AdequacyModel"; version="1.0.8"; sha256="1bpb6lwgkh5g82h4yaf5dh2jbl6f0vz36k22538rhb3kdld6w0i3"; depends=[]; }; + AdequacyModel = derive2 { name="AdequacyModel"; version="2.0.0"; sha256="0amp6ic1wylk24sp9wpx3ci38njj7b9qjqfp89j39hkl6kc1q7sq"; depends=[]; }; + AdjBQR = derive2 { name="AdjBQR"; version="1.0"; sha256="14437pyz9v09ighwqvy1lcw0vfp2gaqzs9nzrb1gkfbb8ndzjw7k"; depends=[coda MHadaptive quantreg survival]; }; + AdvBinomApps = derive2 { name="AdvBinomApps"; version="1.0"; sha256="1cnmn6c2dyl8qfl7g5sqwbjb52psqxzrj1mbm06zak2y1j7j8f49"; depends=[GenBinomApps rootSolve]; }; AggregateR = derive2 { name="AggregateR"; version="0.0.2"; sha256="15gxzs3baa6f1rqwv7s7k6zybx0za1mpzc7db1n47jy9rbh2yxb2"; depends=[dummy]; }; Agreement = derive2 { name="Agreement"; version="0.8-1"; sha256="1g29rxr8xsr0dh2r6c6j2bqs0q6snz9wz0hrnb92cxj27ili55yq"; depends=[R2HTML]; }; + AhoCorasickTrie = derive2 { name="AhoCorasickTrie"; version="0.1.0"; sha256="0k2lcyxfsavis9g1g5293f0mw7f6jakkr11wkkjvxdlnba9c80r8"; depends=[Rcpp]; }; Ake = derive2 { name="Ake"; version="1.0"; sha256="1dj598xfdyjqvysc39a0d5gizgk367c5lkddmwmsqa8zjmvpr15a"; depends=[]; }; AlgDesign = derive2 { name="AlgDesign"; version="1.1-7.3"; sha256="0bl7mx4dnmkgs2x1fj7cqnrp7jx18mqwxyga0rzlniq12h8mc3fz"; depends=[]; }; AlgebraicHaploPackage = derive2 { name="AlgebraicHaploPackage"; version="1.2"; sha256="1krm5cx609sv2p0g3xm5jaiqs9li06v717lw7ywjvx7myc9x4c07"; depends=[]; }; - AlignStat = derive2 { name="AlignStat"; version="1.1.3"; sha256="0zaykr7izpms59w6yhxzbjxrcvlq5028vnjqp2l7vy0767ivljci"; depends=[ggplot2 Rcpp reshape2 seqinr]; }; + AlignStat = derive2 { name="AlignStat"; version="1.3.1"; sha256="1x9nlf3z6rpfca3k3cqm673sid418mnl44df9v93nyj5dpd70ylc"; depends=[ggplot2 Rcpp reshape2 seqinr]; }; AllPossibleSpellings = derive2 { name="AllPossibleSpellings"; version="1.1"; sha256="0ksfm2pfjka3yjgcd257v7sns1niaylsfxvhhh2jwdi016cpdw10"; depends=[]; }; AlleleRetain = derive2 { name="AlleleRetain"; version="1.3.1"; sha256="1k2iwns1wk5n02cii6p9prgdb6asys3vwiq5dq2i26fk2xr6j4gq"; depends=[]; }; Amelia = derive2 { name="Amelia"; version="1.7.4"; sha256="0w6532s5xr7pw47zqhhymql7i68c4lralvw1gc26l9d4c7ib00fd"; depends=[foreign Rcpp RcppArmadillo]; }; AmericanCallOpt = derive2 { name="AmericanCallOpt"; version="0.95"; sha256="1nhy44j5bmmjsp6g79nrn741rzzxikhdnxk4wwbdj9igcc1bs573"; depends=[]; }; + AmmoniaConcentration = derive2 { name="AmmoniaConcentration"; version="0.1"; sha256="05pnwfji9l9az4jvni6jy7cayzg5pbspz82a63kmj6rgibn4ywvn"; depends=[]; }; + AmostraBrasil = derive2 { name="AmostraBrasil"; version="1.2"; sha256="06y555gl9g89gygrv1rhg8j1bhb38m09mvvw67wvwhdl56j0fqbd"; depends=[foreign RCurl rgdal RJSONIO sp stringr]; }; AmpliconDuo = derive2 { name="AmpliconDuo"; version="1.1"; sha256="1vqpahavsksphxjyhd94dghg9ddskbfbs5vl5qcwl3jkjfvl7lwy"; depends=[ggplot2 xtable]; }; + AmyloGram = derive2 { name="AmyloGram"; version="1.0"; sha256="0qifcx8i29il1lih6smd38cbxqf6rnkx1nncb1yplhyjmi6vdng3"; depends=[biogram ranger seqinr shiny]; }; AnDE = derive2 { name="AnDE"; version="1.0"; sha256="1yil8ab50wvlqmdla9kmfba8vfgy5r694r6igb58s6vnmld78yf2"; depends=[discretization foreign functional stringr]; }; AnalyzeFMRI = derive2 { name="AnalyzeFMRI"; version="1.1-16"; sha256="1mbjb682ns5230jd3vcvd6x4gnn9hpbmjd7r8120y4sp2g733b0f"; depends=[fastICA R_matlab]; }; - AnalyzeTS = derive2 { name="AnalyzeTS"; version="1.7"; sha256="0ssh8y854s8v833n8fl93nz8arkbj2ac6ihk65ahm7b89phcpd0z"; depends=[MASS TSA tseries TTR]; }; - AncestryMapper = derive2 { name="AncestryMapper"; version="1.2"; sha256="0d47vkf59ysa58wnlqkshsvdzhcppb9xc1agwkxv37jv1asllb67"; depends=[]; }; + AnalyzeTS = derive2 { name="AnalyzeTS"; version="2.2"; sha256="0ll4g8yzxhricz56vin8hhyplrmvjmkwfldya41vz6y6bwhywnmb"; depends=[MASS TSA tseries TTR urca]; }; + AncestryMapper = derive2 { name="AncestryMapper"; version="2.0"; sha256="1fr2y1a5rn7rq8aly94f618kywix32jwysi70nfhaqx8hf4zzprb"; depends=[svd]; }; AnglerCreelSurveySimulation = derive2 { name="AnglerCreelSurveySimulation"; version="0.2.1"; sha256="100mbmdllk6c32j75jviz2k9kmwca3jvrqb95a555alfcpkfim8c"; depends=[]; }; AnnotLists = derive2 { name="AnnotLists"; version="1.2"; sha256="1g2khb2ggniwg2zcjamsm3bxyrl2zabvk540b5vyy9am9k83m1g9"; depends=[]; }; + AntAngioCOOL = derive2 { name="AntAngioCOOL"; version="1.2"; sha256="1krwms0y3xppc2y4m0az51wcbh4jq7mlr0jwinp66w8gh4k3qnp2"; depends=[caret rJava rpart RWeka]; }; AntWeb = derive2 { name="AntWeb"; version="0.7"; sha256="1ykfg3zzjdvjppr2l4f26lx00cn5vaqhhz1j1b5yh113ggyl40qw"; depends=[assertthat httr leafletR plyr rjson]; }; - AnthropMMD = derive2 { name="AnthropMMD"; version="0.9.9"; sha256="10wn0fkcli5yz3fhngsz8sg1mfllqkvjrpjggd9qynay2zrpiw1n"; depends=[tcltk2]; }; + AnthropMMD = derive2 { name="AnthropMMD"; version="1.0.1"; sha256="1zb5qxmnbp2ha7hsnb4cvlc6n83gimwsq2g5pwkg7yqi5xgcp1ff"; depends=[tcltk2]; }; Anthropometry = derive2 { name="Anthropometry"; version="1.7"; sha256="09bmd7gvkxm2jvcjzz0dqj5frr07fzb3r4qzih404zynrg859r9s"; depends=[archetypes biclust cluster depth FNN ICGE nnls rgl shapes]; }; - ApacheLogProcessor = derive2 { name="ApacheLogProcessor"; version="0.1.5"; sha256="1xnx6syn365s4w4pks7xq6rng7hk30xln8hvszxwhwfnkzr8qqn2"; depends=[doParallel foreach]; }; + ApacheLogProcessor = derive2 { name="ApacheLogProcessor"; version="0.2.0"; sha256="04p1h2iahy6x65rdlrzcp18126dikrl2mapvrmh6jlwsg19b9sjc"; depends=[doParallel foreach stringr]; }; AppliedPredictiveModeling = derive2 { name="AppliedPredictiveModeling"; version="1.1-6"; sha256="004d2k3mhl45inb7kx1ph8xc8h9bgm7f7l3prmvqrl5792400cn4"; depends=[CORElearn MASS plyr reshape2]; }; - AquaEnv = derive2 { name="AquaEnv"; version="1.0-3"; sha256="1hkygw09w70im9f6l6q5yxk86mdl5pkczqfqrwc4wl1yhz7z1gjb"; depends=[deSolve minpack_lm]; }; + AquaEnv = derive2 { name="AquaEnv"; version="1.0-4"; sha256="07yx7mbslqgqg7ky67n3xfhskaj7s3w5mvl7xkih48xbsdlmxi4l"; depends=[minpack_lm]; }; ArArRedux = derive2 { name="ArArRedux"; version="0.2"; sha256="0ql9yx46sgqkc3jd7yaw3vwg8rnykbsvpcahrgc66753kcxih04q"; depends=[]; }; ArDec = derive2 { name="ArDec"; version="2.0"; sha256="14niggcq7xlvpdhxhy8j870gb11cpk4rwn9gwsfmcfvh49g58i80"; depends=[]; }; + ArchaeoPhases = derive2 { name="ArchaeoPhases"; version="1.0"; sha256="0q0j08ih9isd91wkm39x887fjb01481g9d7i5086zs5jyahlfdkw"; depends=[coda hdrcde shiny shinythemes]; }; ArfimaMLM = derive2 { name="ArfimaMLM"; version="1.3"; sha256="0s5igf703zzvagsbdxf5yv4gn0vdq51b7fvbc8xkgvlmv91yy372"; depends=[fracdiff fractal lme4]; }; - ArgumentCheck = derive2 { name="ArgumentCheck"; version="0.10.0"; sha256="0cq4yzayj3wc45pna59v55xfa6x98q5s62kxwmqs6q76d50z7mzp"; depends=[]; }; + ArgumentCheck = derive2 { name="ArgumentCheck"; version="0.10.2"; sha256="0mgx7mzbg2wynixcf9hvs0i9p4zka7c3chrfvjmvvvwwgsy24hkc"; depends=[]; }; ArrayBin = derive2 { name="ArrayBin"; version="0.2"; sha256="0jlhcv2d7pmqi32w71nz063ri1yj4i4isr3msnw7ckzvi9r42jwm"; depends=[SAGx]; }; AsioHeaders = derive2 { name="AsioHeaders"; version="1.11.0-1"; sha256="1g226im9aakqdv5gynsl568w0mxcbfrny9lqid7pl984pq8xr8ks"; depends=[]; }; + AssayCorrector = derive2 { name="AssayCorrector"; version="1.1.3"; sha256="172zvyjim1w69d8v2ah8l56yj05vwypi77gkcz80xfyfmgcksgdk"; depends=[lattice latticeExtra RColorBrewer]; }; AssetPricing = derive2 { name="AssetPricing"; version="1.0-0"; sha256="12v8hmmknkp472x406zgzwjp7x8sc90byc3s3dvmwd5qhryxkkix"; depends=[deSolve polynom]; }; AssocTests = derive2 { name="AssocTests"; version="0.0-3"; sha256="0vin9jkyvmgwk3kjf32qd8q9cj8ibmvdggbh8ny6f413ldyd77qc"; depends=[cluster combinat fExtremes mvtnorm]; }; AssotesteR = derive2 { name="AssotesteR"; version="0.1-10"; sha256="0aysilg79vprcyjirqz6c5s1ry1ia92xik3l38qrw1gf3vfli9cw"; depends=[mvtnorm]; }; AsynchLong = derive2 { name="AsynchLong"; version="2.0"; sha256="1wjby75rpypzyrxnv2lgl7h2fsvyni3bpiwclp0x7cl4sxic1x5c"; depends=[]; }; AtelieR = derive2 { name="AtelieR"; version="0.24"; sha256="0yialpmbsbx70gvps4r58xg9wvqcril8j8yd61lkkmz4b3195zai"; depends=[cairoDevice gWidgetsRGtk2 partitions proto]; }; AtmRay = derive2 { name="AtmRay"; version="1.31"; sha256="162078jd032i72sgaar9hqcnn1lh60ajcqpsz4l5ysxfkghcxlh8"; depends=[]; }; + AutoDeskR = derive2 { name="AutoDeskR"; version="0.1.2"; sha256="16yzlrksi0fpdj1j845wbqznv1313a6npxa6a8jl5nac4sbqck27"; depends=[httr jsonlite shiny]; }; AutoModel = derive2 { name="AutoModel"; version="0.4.9"; sha256="07wpdf5b1z6lk69nqybzx333zc57wbnga6dp0vkf1d50hxmpd9yc"; depends=[aod BaylorEdPsych broom car dplyr gtools lmtest MASS ROCR rowr]; }; AutoSEARCH = derive2 { name="AutoSEARCH"; version="1.5"; sha256="1s2ldhxijd8n9ba78faik6gn4f07pdzksy0030pqyafxlr3v1qdj"; depends=[lgarch zoo]; }; AutoregressionMDE = derive2 { name="AutoregressionMDE"; version="1.0"; sha256="1dmg0q4sp2d2anzhw2my8xjhpyjsx0kf7r202q5bkw8yr57jnhvr"; depends=[]; }; - AzureML = derive2 { name="AzureML"; version="0.2.10"; sha256="0a096pzpp1ij1lj0cj5gh6f3kskgjwhigd4bclkdhvqk07dxcqnv"; depends=[base64enc codetools curl foreign jsonlite miniCRAN uuid]; }; + AzureML = derive2 { name="AzureML"; version="0.2.13"; sha256="03b2s76dbzvpy32vj5kb030k1x64lll4bfv0ci92rii9l35653gc"; depends=[base64enc codetools curl foreign jsonlite miniCRAN uuid]; }; B2Z = derive2 { name="B2Z"; version="1.4"; sha256="0w7394vs883vb32gs6yhrc1kh5406rs851yb2gs8hqzxad1alvpn"; depends=[coda mvtnorm numDeriv]; }; BACA = derive2 { name="BACA"; version="1.3"; sha256="1vbip7wbzix1s2izbm4058wmwar7w5rv3q8bmj9pm7hcapfi19k0"; depends=[ggplot2 RDAVIDWebService rJava]; }; BACCO = derive2 { name="BACCO"; version="2.0-9"; sha256="0i1dnk0g3miyv3b60rzgjjm60180wxzv6v2q477r71q74b0v0r1y"; depends=[approximator calibrator emulator]; }; + BACCT = derive2 { name="BACCT"; version="1.0"; sha256="0bpm4l27vbblzi2hhfbjw2af3ic2jbnyghkvchpq8ww43k8068iv"; depends=[ggplot2 reshape2 rjags]; }; BACprior = derive2 { name="BACprior"; version="2.0"; sha256="1z9dvjq4lr99yp6c99bcv6n5jiiwfddfz4izcpfnnyvagfgizr8p"; depends=[boot leaps mvtnorm]; }; BAEssd = derive2 { name="BAEssd"; version="1.0.1"; sha256="04wkhcj4wm93hvmfnnzryswaylnxz5qsgnqky9lsx4jqhvg340l6"; depends=[mvtnorm]; }; - BAMMtools = derive2 { name="BAMMtools"; version="2.1.1"; sha256="1r64n6ym5wjxc4p6pq92lwj7z6nlv33c5ikbimp0c9my7n9dlyby"; depends=[ape]; }; - BANFF = derive2 { name="BANFF"; version="1.0"; sha256="0j6rv7p34i9bgl8iig4wg2qg495xskw8j1i3wwvzynz97xn2iyzf"; depends=[coda doParallel DPpackage foreach igraph mclust network pscl tmvtnorm]; }; - BANOVA = derive2 { name="BANOVA"; version="0.2"; sha256="1zgn9wxh4c89rris58hhj5fh37mmy8wjvligr02id7a1pcw177m3"; depends=[coda rjags runjags]; }; - BAS = derive2 { name="BAS"; version="1.0.9"; sha256="0jhf9ijarvib924hfy1j39mifaraazzv8lp6fqvrj27fxndmhxw7"; depends=[]; }; + BAMBI = derive2 { name="BAMBI"; version="1.1.0"; sha256="1578iifmjzlhxvgih8l5va07w6zk8d6li7j1w91033lfpzivahr0"; depends=[label_switching Rcpp RcppArmadillo]; }; + BAMMtools = derive2 { name="BAMMtools"; version="2.1.6"; sha256="01mb40w3g0xy93pl9064ky8kd46sa7qlz6by1r6kchcfhajx8plv"; depends=[ape gplots Rcpp]; }; + BANFF = derive2 { name="BANFF"; version="1.1"; sha256="1jzmrw170577xl6zliyf53862gk1gkpx4dhb6jyqxmipkn56b8la"; depends=[coda doParallel DPpackage foreach igraph mclust network pscl tmvtnorm]; }; + BANOVA = derive2 { name="BANOVA"; version="0.8"; sha256="0kjmhb1y3vkm8yw4z5fqmr1ripblk82svg2ik15ml2xnriwgdpwp"; depends=[coda rjags runjags]; }; + BAS = derive2 { name="BAS"; version="1.4.3"; sha256="1ix277flarxp5xk3w3r715i1y30bx2d49c73s1xhjrwjlpj6jj74"; depends=[]; }; BASIX = derive2 { name="BASIX"; version="1.1"; sha256="18dkvv1iwskfnlpl6xridcgqpalbbpm2616mvc3hfrc0b26v01id"; depends=[]; }; - BAT = derive2 { name="BAT"; version="1.4.0"; sha256="18152jd8k3pngnjgzjmbvsk5qhxsqsi3k1yfdrcb61n4hvqxgns1"; depends=[nls2 spatstat vegan]; }; + BASS = derive2 { name="BASS"; version="0.2.0"; sha256="1sgz4clzbrbhj845nf1bbv16ww2j72vfvmb7n8hhnpv84r5q5dm9"; depends=[]; }; + BAT = derive2 { name="BAT"; version="1.5.5"; sha256="1kgrc2crj834qlnac2kb18pp3dfpryhsrh4l84jpm561kk3wzcqb"; depends=[nls2 raster spatstat vegan]; }; BAYSTAR = derive2 { name="BAYSTAR"; version="0.2-9"; sha256="0crillww1f1jvhjw639sf09lpc3wpzd69milah143gk9zlrkhmz2"; depends=[coda mvtnorm]; }; BB = derive2 { name="BB"; version="2014.10-1"; sha256="1lig3vxhyxy8cnic5bczms8pajmdvwr2ijad1rkdndpglving7x0"; depends=[quadprog]; }; BBEST = derive2 { name="BBEST"; version="0.1-6"; sha256="1hvgi3679ixpq0c5qbxhkp1j0953k3lklglgxrq9mz2ry6z9n038"; depends=[DEoptim ggplot2 reshape2 shiny wmtsa]; }; BBMM = derive2 { name="BBMM"; version="3.0"; sha256="1cvv786wf1rr5906qg1di2krrv5jgw3dnyl8z2pvs8jyn0kb3fkj"; depends=[]; }; BBRecapture = derive2 { name="BBRecapture"; version="0.1"; sha256="05xzp5zjmkh0cyl47qfsz0l8drg8mimssybhycc4q69aif9scqxb"; depends=[HI lme4 locfit secr]; }; - BBmisc = derive2 { name="BBmisc"; version="1.9"; sha256="01ihbx6cfgqvz87kpy7yb9c7jlizdym3f0n16967x2imq73dazsb"; depends=[checkmate]; }; + BBmisc = derive2 { name="BBmisc"; version="1.10"; sha256="0cw2mhw7qhdrx91zzd5iwyh7ch9fy4wxga8j63731q6sxr1airjl"; depends=[checkmate]; }; BCA = derive2 { name="BCA"; version="0.9-3"; sha256="0ksd6b0ykydgdn33x29bwwqkrp23cvdj3imps0l6qs1p4465j5nf"; depends=[car clv flexclust Rcmdr RcmdrMisc rpart]; }; BCBCSF = derive2 { name="BCBCSF"; version="1.0-1"; sha256="0hvhnra68i0x78n57nlbxmz0qwl2flng9w47089jw6f9hzkq9r7n"; depends=[abind]; }; + BCC1997 = derive2 { name="BCC1997"; version="0.1.1"; sha256="1lqbivjkc7858jn54av1v9bzp0as43klgndbzkr59dc3l128xp12"; depends=[]; }; BCDating = derive2 { name="BCDating"; version="0.9.7"; sha256="0z3a95sc481p0n33mhg7qlsf1jynbm1vbfds0n03bsjrwvqkzpb2"; depends=[]; }; BCE = derive2 { name="BCE"; version="2.1"; sha256="0dqp08pbq7r88yhvlwgzzk9dcdln7awlliy5mfq18j5jhiy7axiz"; depends=[FME limSolve Matrix]; }; - BCEA = derive2 { name="BCEA"; version="2.2-2"; sha256="0nal906l60f6llv8dzfsa0367abdkch0gc13rb3jix3cn0iwfwlf"; depends=[MASS]; }; + BCEA = derive2 { name="BCEA"; version="2.2-5"; sha256="0jiizwnxycbz9x8fmkcw3rcjkgg5b9fawyddf8swvx23cnfm6z8z"; depends=[MASS]; }; BCEE = derive2 { name="BCEE"; version="1.1"; sha256="0pssqmjj13wjbkq8ls5r9zr08by24q0k9g4f1aysgxds2a4dawd1"; depends=[BMA]; }; BCEs0 = derive2 { name="BCEs0"; version="1.1-1"; sha256="1ipg8xliqnpfa4ga9r0gqf5sfa9gass4hvrlgxazs5hb18fpsl91"; depends=[]; }; BCRA = derive2 { name="BCRA"; version="1.0"; sha256="1bbxh1kf35h31c4k565kk6grdhp5pnn8vr3nr6vnp32dp4pc05zh"; depends=[]; }; - BDWreg = derive2 { name="BDWreg"; version="1.0.0"; sha256="0fv9w19ansrfil9lx7v32p392h9mfal1znj8p47p1n22jbk208x8"; depends=[coda doParallel foreach MASS]; }; - BDgraph = derive2 { name="BDgraph"; version="2.26"; sha256="0lbn7780pn55hm46ml7sgmcv3vvlwaa54hhks3z634hnyjk8f3b8"; depends=[igraph Matrix]; }; + BCSub = derive2 { name="BCSub"; version="0.3"; sha256="0ap3mj6dm71xrx9aygnhmhkiyga0ln7xcg863da27yw2a74fdjxk"; depends=[MASS mcclust nFactors Rcpp RcppArmadillo]; }; + BCellMA = derive2 { name="BCellMA"; version="0.3.2"; sha256="10n2z8p8m7np0d3v3w7ig2hmi9lxf59fiwib27zxz5xzdkdf61af"; depends=[ggplot2 reshape2]; }; + BDWreg = derive2 { name="BDWreg"; version="1.2.0"; sha256="07j6dy69q1as1nwgp2790wzpzmjich2256cddhl7n3h2rs1dja74"; depends=[coda doParallel DWreg foreach MASS]; }; + BDgraph = derive2 { name="BDgraph"; version="2.33"; sha256="1l59dk9ml40yhl71xxv0agxhiljabv15dr9gpzfdsxjbnjgk6mqi"; depends=[igraph Matrix]; }; + BEACH = derive2 { name="BEACH"; version="1.1.2"; sha256="10533ac575mcw9mv1lf3dgjjaf1hgzv3yn7ys9qi6b2k5fynhsg0"; depends=[devtools DT haven plyr readxl rJava rtf sas7bdat SASxport shiny WriteXLS xtable]; }; BEANSP = derive2 { name="BEANSP"; version="1.0"; sha256="0xcb81pk3iidb3dz9l4hm6cwx8hrbg5qz0sfi59yx2f7nsazr4xk"; depends=[]; }; BEDASSLE = derive2 { name="BEDASSLE"; version="1.5"; sha256="1bz3lr0waly9vj9adwhmgs3lq7zjdkcbvm3y9rnn72qlrwmv5fbn"; depends=[emdbook MASS matrixcalc]; }; - BEDMatrix = derive2 { name="BEDMatrix"; version="1.2.0"; sha256="1j80gdkir5p5wlfq7p3bnqcphm6fmxgya46ga0ifz1rxiwqhw5vf"; depends=[BH Rcpp]; }; + BEDMatrix = derive2 { name="BEDMatrix"; version="1.3.0"; sha256="0i8g9kc8vq79mbzds7s5c10kvbx3bw6c964jx33cga2z788wcv4s"; depends=[BH Rcpp]; }; BEQI2 = derive2 { name="BEQI2"; version="2.0-0"; sha256="19q29kkwww5hziffkm2yx7n4cpfcsyh0z4mljdcnjkwfp732sjig"; depends=[jsonlite knitr markdown plyr reshape2 xtable]; }; BEST = derive2 { name="BEST"; version="0.4.0"; sha256="1clch2271x9r5frgpis31b13jjgp4sdxd75s44chcislyzlinrlp"; depends=[coda jagsUI]; }; - BGLR = derive2 { name="BGLR"; version="1.0.4"; sha256="1bvk8iifvrcvnb0f1k3v9xxajljsz79ck95191p8alnda64cz0zf"; depends=[]; }; + BETS = derive2 { name="BETS"; version="0.0.98"; sha256="0snw5vw0qxllfinjzqwgkyyfavzqx5kay1xx3xqjd3w8ncj1vqs5"; depends=[colorspace dygraphs FinTS forecast foreign fpp fracdiff ggplot2 grnn gtable htmlwidgets lmtest mFilter normtest plotly quadprog Rcpp rmarkdown rootSolve rugarch scales seasonal sqldf stringi stringr testthat timeDate TSA tseries TTR urca viridis zoo]; }; + BGLR = derive2 { name="BGLR"; version="1.0.5"; sha256="14a979rnasaklkfafzpkhr6mqv0ga7fsfxq63scpnlwa2aasgn83"; depends=[]; }; BGPhazard = derive2 { name="BGPhazard"; version="1.2.3"; sha256="1yp92y5y3xh0hb1ring6jrma8g4q6210hm9572j8ji1jkafzxjw1"; depends=[survival]; }; BGSIMD = derive2 { name="BGSIMD"; version="1.0"; sha256="0xkr56z8l72wps7faqi5pna1nzalc3qj09jvd3v9zy8s7zf5r7w4"; depends=[]; }; - BH = derive2 { name="BH"; version="1.60.0-1"; sha256="08gc3b0irgvpjl59irdxs8jhlbky4yp4fvs3zi4pq0wdwj43cfsk"; depends=[]; }; - BHH2 = derive2 { name="BHH2"; version="2015.06.25"; sha256="19c8qjfvg4f3zlrqvrsdmc776f81ghv8w0l3bnbpdbyz7fivc1qw"; depends=[]; }; - BIFIEsurvey = derive2 { name="BIFIEsurvey"; version="1.8-0"; sha256="1lizj7jyh8130y8b2ls912yfr2rf2pfnsmbm6vnfqrhj2xc6b33h"; depends=[miceadds mitools Rcpp RcppArmadillo TAM]; }; - BIGDAWG = derive2 { name="BIGDAWG"; version="1.2.8"; sha256="0ahj2lwfd36lrqpaf2ywjq9i3603dydyw4c2hzx86czaanp2xcx6"; depends=[haplo_stats XML]; }; + BH = derive2 { name="BH"; version="1.62.0-1"; sha256="01vfdpfznd4ynqql33z238xr262mvy3i80lyi8l3a3p3hi0a262p"; depends=[]; }; + BHH2 = derive2 { name="BHH2"; version="2016.05.31"; sha256="1m4fcx979nbm97hi89vbjjix0sx6qhdzs486risck9bi7yzih5k4"; depends=[]; }; + BIEN = derive2 { name="BIEN"; version="1.0.0"; sha256="1yzn7inxc471pnk8b1c6q3s07r8j400dhmplnk7nbbgfbagqi987"; depends=[ape DBI maptools rgdal rgeos RPostgreSQL sp]; }; + BIFIEsurvey = derive2 { name="BIFIEsurvey"; version="1.12-0"; sha256="13bdv9wh5s5jz5hkl839hd9x13958r3p3zzkz6j0nd7z5xax47x6"; depends=[miceadds mitools Rcpp RcppArmadillo TAM]; }; + BIGDAWG = derive2 { name="BIGDAWG"; version="1.5.5"; sha256="1blqaxhx9ffa036zcz30kmkhh58l0ybmyrb2sb947f2i13h7qsk0"; depends=[haplo_stats XML]; }; BIOM_utils = derive2 { name="BIOM.utils"; version="0.9"; sha256="0xckhdvf15a62awfk9rjyqbi6rm7p4awxz7vg2m7bqiqzdll80p7"; depends=[]; }; - BIOdry = derive2 { name="BIOdry"; version="0.3"; sha256="0dn9nbh0h1wz351xba8g7i0g2jv0v5p1rrxpq842lbfibn2wn0q5"; depends=[ecodist nlme]; }; + BIOMASS = derive2 { name="BIOMASS"; version="1.1"; sha256="1qawp10hw7xhqyg9bdwvgxbksiwhga7h6vwp8m7q30ibwfv5kamg"; depends=[httr jsonlite minpack_lm msm raster]; }; + BIOdry = derive2 { name="BIOdry"; version="0.4"; sha256="00xv6qyrmfsyp2qfb8ffii0ifxx18wj7lxzb2svdmqbg8xz8pnbv"; depends=[ecodist nlme]; }; BIPOD = derive2 { name="BIPOD"; version="0.2.1"; sha256="04r58gzk3hldbn115j9ik4bclzz5xb2i3x6b90m2w9sq7ymn3zg1"; depends=[Rcpp RcppArmadillo]; }; BKPC = derive2 { name="BKPC"; version="1.0"; sha256="1c5n2vdpsk00slqyxxq2c8d7ix8jdbyigrh23ykd4b95mynp9kdv"; depends=[kernlab]; }; BLCOP = derive2 { name="BLCOP"; version="0.3.1"; sha256="1qfkljw5b1k4b5jd08hw6dsmvgr7vg3kjyib5s13q0mkxvclasym"; depends=[fBasics fMultivar fPortfolio MASS quadprog RUnit timeSeries]; }; BLR = derive2 { name="BLR"; version="1.4"; sha256="0wy3c8nnzkdhwb5s1ygdid47hpdx72ryim36mnicrydy0msjivja"; depends=[SuppDists]; }; BMA = derive2 { name="BMA"; version="3.18.6"; sha256="1yx54miy5vn8rb5aynsjsfjxkblq0n1k86h1iyr14rf4q9sd3phi"; depends=[inline leaps robustbase rrcov survival]; }; BMN = derive2 { name="BMN"; version="1.02"; sha256="12gyq01cn6a9ixqgki1ihx5jrp2gw6jdj7q210rb12xlvj3p6x7w"; depends=[]; }; - BMRV = derive2 { name="BMRV"; version="1.31"; sha256="02y589figv152mx7a9jra3vhjp7sjiljvpf24fhavnh0da3irg4z"; depends=[BH]; }; + BMRV = derive2 { name="BMRV"; version="1.32"; sha256="1j1cwjk3l7f06nqdwrqdyhzm43bb8hj5wgdd14zc1grxyfc9ya95"; depends=[BH]; }; BMS = derive2 { name="BMS"; version="0.3.4"; sha256="0z3mk1xd1fphf80kdbashkn04jwsr2bghms4d7nav3pw73q41wql"; depends=[]; }; BMhyd = derive2 { name="BMhyd"; version="1.2-8"; sha256="14pv5f621zq5x9i408zjm8k80hcsabkjpdf86gk3ylgw5yqcivrx"; depends=[ape corpcor geiger mvtnorm numDeriv phylobase phytools TreeSim]; }; BNDataGenerator = derive2 { name="BNDataGenerator"; version="1.0"; sha256="17zi83jhpn9ygavkpr9haffvd4622sca18jzzxxxmfq0ilrj201g"; depends=[]; }; + BNPMIXcluster = derive2 { name="BNPMIXcluster"; version="0.2.0"; sha256="1w8p8fkiai2xqgf0w8imv55p8s1nvsfdfmyrq2cnc5b8m1gw457k"; depends=[MASS matrixcalc mvtnorm plyr truncnorm]; }; BNPTSclust = derive2 { name="BNPTSclust"; version="1.1"; sha256="1zmxwg6zn3nqqm1sw2n4pvq47mv7ygb4lf1c6yhn3xaf1rqmf26s"; depends=[MASS mvtnorm]; }; BNPdensity = derive2 { name="BNPdensity"; version="2015.5"; sha256="0jgdc9dayc57y77bb2yjcn1pb5ahrvbrsmyjkhyl4365sn5njzl8"; depends=[]; }; - BNSP = derive2 { name="BNSP"; version="1.1.0"; sha256="1l45x3h0jqszcp7zws6y4nbq2vzyv6aa60kwqfpkjw0kdbbcpw7m"; depends=[]; }; BOG = derive2 { name="BOG"; version="2.0"; sha256="0lz5af813b67hfl4hzcydn58sjhgn5706n2h44g488bks928k940"; depends=[DIME hash]; }; - BOIN = derive2 { name="BOIN"; version="2.1"; sha256="14xfjp1ir1mlg3wayn66rnwnjccdpnk7p0l59455v1wglbajnzb3"; depends=[Iso]; }; + BOIN = derive2 { name="BOIN"; version="2.4"; sha256="0vb3bkaq9vl1yqm3dhdpd27nhv2095n3lp90fr961jpwj1xhjh5l"; depends=[Iso]; }; + BPEC = derive2 { name="BPEC"; version="1.0"; sha256="15ys0nzy6988yw1lf4lmv2h9i164cbl41x261gdyvmg0dy62qsnc"; depends=[ape coda fields igraph maps maptools mvtnorm phytools R2G2 sp]; }; BRugs = derive2 { name="BRugs"; version="0.8-6"; sha256="0nvp3lwliq72qibvz4bg6c7ixxmhgwl87hyl2qvkgiavix3nkxk7"; depends=[coda]; }; BSDA = derive2 { name="BSDA"; version="1.01"; sha256="06mgmwwh56bj27wdya8ln9mr3v5gb6fcca7v9s256k64i19z12yi"; depends=[e1071 lattice]; }; BSGS = derive2 { name="BSGS"; version="2.0"; sha256="08m8g4zbsp55msqbic4f17lcry07mdn0f5a61zdcy2msn2ihzzf9"; depends=[batchmeans MASS plyr pscl]; }; - BSGW = derive2 { name="BSGW"; version="0.9.1"; sha256="1zp8352mgqpmyn63b5xfmq67rsf3cdy7yy5k1qihdlkw9bi5r3vc"; depends=[doParallel foreach MfUSampler survival]; }; - BSSasymp = derive2 { name="BSSasymp"; version="1.1-2"; sha256="1c1s574ss7vm00hykv6ahlsw6yzsxdj96cfcj4f1khrmnakiv7z3"; depends=[fICA JADE]; }; + BSGW = derive2 { name="BSGW"; version="0.9.2"; sha256="1q6qvm9yxh35wywrzs3kr31jsa0bmbwrqh0r3qjc0dzi6q8n6pjy"; depends=[doParallel foreach MfUSampler survival]; }; + BSSasymp = derive2 { name="BSSasymp"; version="1.2-0"; sha256="1xs6gfvsla7h1sldckjfpw3qx7fhxiqzv849g3k6w1309r7pv75r"; depends=[fICA JADE]; }; BSagri = derive2 { name="BSagri"; version="0.1-8"; sha256="148pr4lkgdi4bwc9lavgj356nh240iazz28xklq14rw4gzhmz2k4"; depends=[boot gamlss MCPAN mratios multcomp mvtnorm]; }; BSquare = derive2 { name="BSquare"; version="1.1"; sha256="1s16307m5gj60nv4m652iisyqi3jw5pmnvar6f52rw1sypfp5n49"; depends=[quadprog quantreg VGAM]; }; - BTLLasso = derive2 { name="BTLLasso"; version="0.1-2"; sha256="02zd0fp7km4l2ks50z37gqcbpq6fsvkiwqnccndszrwqhi41x7y5"; depends=[Matrix Rcpp RcppArmadillo stringr]; }; + BTLLasso = derive2 { name="BTLLasso"; version="0.1-5"; sha256="1kvb6hvg3v81p9bkc8z3dqhmmfj1rxzzpx9n3lknmfrynq1a6748"; depends=[Matrix Rcpp RcppArmadillo stringr]; }; + BTR = derive2 { name="BTR"; version="1.2.4"; sha256="0vf71a36id6zgx0phb0kyry7y9xcdhnincxh3fryzhdigxkahg4h"; depends=[diptest doParallel entropy foreach igraph infotheo poweRlaw Rcpp]; }; BTSPAS = derive2 { name="BTSPAS"; version="2014.0901"; sha256="0ankkhm38rvq06g0jnbvjbja4jv8lg21dsc0rxsy174b1i6vjhwi"; depends=[actuar coda ggplot2 plyr R2OpenBUGS rjags]; }; BTYD = derive2 { name="BTYD"; version="2.4"; sha256="13szcsgsrd7mwc4f47xrfrmsm2sg5sf7pfm21ly4cbvqcz8m0147"; depends=[hypergeo Matrix]; }; + BTYDplus = derive2 { name="BTYDplus"; version="1.0.1"; sha256="0x8as4zskpbsvhh8gnvzgp833dkv01cs5fqfva9qri296343kppv"; depends=[bayesm BTYD coda data_table mvtnorm Rcpp]; }; + BUCSS = derive2 { name="BUCSS"; version="0.0.1"; sha256="1in3y2z9maqd10fma67v8skpngsifr5cm9wsnfii0iflibs4ljbq"; depends=[]; }; BVS = derive2 { name="BVS"; version="4.12.1"; sha256="111g61bpwh80v6gy44q087swcrnnnzdcibm22pzzi9jsfphy6l0c"; depends=[haplo_stats MASS msm]; }; + BWStest = derive2 { name="BWStest"; version="0.2.0"; sha256="1fv4jv2fr740a1f8p6wild6szb03j8vm59y12nl4cl4aa6wn40rz"; depends=[memoise Rcpp]; }; BaBooN = derive2 { name="BaBooN"; version="0.2-0"; sha256="145q2kabjks2ql3m48sfjis5y35l8rcqnr5s176viv9yhfafn351"; depends=[coda Hmisc MASS nnet Rcpp RcppArmadillo]; }; - BaM = derive2 { name="BaM"; version="0.99"; sha256="1q04va2s876ydlmaalx63r520pfx1qzpjg6hbnl9pvn86b5grnf4"; depends=[bayesm coda foreign MASS mice nnet survival]; }; + BaM = derive2 { name="BaM"; version="1.0.1"; sha256="0y8m6mhghlrp379swj9cfrzqcdr3a7y29mx4d6zld4is00wdw16b"; depends=[coda dlm MASS mice nnet]; }; + BaPreStoPro = derive2 { name="BaPreStoPro"; version="0.1"; sha256="0zyyyrr5h8dhjsmgaii8jmb8ignvixpc9nzbfishw9yymjswvm57"; depends=[]; }; BaSTA = derive2 { name="BaSTA"; version="1.9.4"; sha256="1j092gsdip7rpw0g74ha0kjsrqpp5swi7wd4sxlmx6zarcqnxlal"; depends=[snowfall]; }; - BacArena = derive2 { name="BacArena"; version="1.0.1"; sha256="1hr454nyrd3cn901ppj5giimn7nyakv9fbc9lz4fvb7srw915lg2"; depends=[deSolve igraph Matrix Rcpp RcppArmadillo RcppEigen ReacTran sybil]; }; + BaTFLED3D = derive2 { name="BaTFLED3D"; version="0.1.7"; sha256="06bvx2f094r4rkzpv517h81pjg211k7ajfcq0k3lxdar7ck1388a"; depends=[foreach iterators R6 RColorBrewer rTensor]; }; + BacArena = derive2 { name="BacArena"; version="1.5.1"; sha256="03rk0b1dbyzhwdfj3q4a91hwhzng76fshnbnbyfblmnnnsfk4v9g"; depends=[deSolve ggplot2 glpkAPI igraph Matrix Rcpp RcppArmadillo RcppEigen ReacTran reshape2 sybil]; }; Bagidis = derive2 { name="Bagidis"; version="1.0"; sha256="1prdbkc0qgzkkrkhp43pjyg35q9ivngk8wa4a7khlnfsj21jaraf"; depends=[abind]; }; - BalancedSampling = derive2 { name="BalancedSampling"; version="1.5.1"; sha256="10km8xcaz1vrabdgbanajza0667w5l8ly7n7lgil2ip9cgfxyw2p"; depends=[Rcpp]; }; - Barnard = derive2 { name="Barnard"; version="1.6"; sha256="1wk93yj4pl3mybyl2lvgbpq0chpm4akx3rqb29dk34fkfiwmvlhq"; depends=[]; }; + BalanceCheck = derive2 { name="BalanceCheck"; version="0.1"; sha256="09mkssic173glgcn592cb6zmz80kndggqc4hc800f91xnfql0332"; depends=[ade4 mvtnorm]; }; + BalancedSampling = derive2 { name="BalancedSampling"; version="1.5.2"; sha256="0a4mb5lwjcy5d3h0ypsqmqniqx3dm64mssj65apgl48wqbm6zvv0"; depends=[Rcpp]; }; + BarcodingR = derive2 { name="BarcodingR"; version="1.0-2"; sha256="1mn5rdax8v1s2z3apk9z0kzy4hw19m8ql6j91l6wd29g2n2bjqxx"; depends=[ape class nnet sp]; }; + Barnard = derive2 { name="Barnard"; version="1.8"; sha256="1ki58hjs5kpmp76kwj1qi6hwmdvjphqb1lvrlhnmkgqxg4hw4vqg"; depends=[]; }; + Barycenter = derive2 { name="Barycenter"; version="1.0"; sha256="0dqa3fzrwcaqgkj883v9cn5v0zl3rl32zlqzx9lbqzbrlchxgc3k"; depends=[Rcpp RcppArmadillo]; }; BatchExperiments = derive2 { name="BatchExperiments"; version="1.4.1"; sha256="0fg7p0q6avc0kcwcd3z4q3akrr2mkrx2yf9zcd6hhz22l3x4aphz"; depends=[BatchJobs BBmisc checkmate DBI plyr RSQLite]; }; + BatchGetSymbols = derive2 { name="BatchGetSymbols"; version="1.1"; sha256="1njivlrn3wyr5frwqd9d152y0xlvh6d38p9i1p87bnpjpzcc7iyv"; depends=[curl quantmod rvest stringr]; }; BatchJobs = derive2 { name="BatchJobs"; version="1.6"; sha256="1kb99024jih5bycc226bl4jyvbbl1sg72q3m2wnlshl7s8p6vva0"; depends=[BBmisc brew checkmate DBI digest fail RSQLite sendmailR stringr]; }; BayClone2 = derive2 { name="BayClone2"; version="1.1"; sha256="1wprdj22zh8fwqawcv4m2n2y7sqwh2f6m9b0cq0rp4ll774yz30i"; depends=[combinat]; }; BayHap = derive2 { name="BayHap"; version="1.0.1"; sha256="0xqnl2cbf0pyjlpywyy0j4mwknfn8msz4s719dsri3r7hvn9m6kd"; depends=[boa]; }; BayHaz = derive2 { name="BayHaz"; version="0.1-3"; sha256="08ilghlkgyma5758yw7mdgqycqcillqmx73knzzdlg2kzc77dvg6"; depends=[]; }; BaySIC = derive2 { name="BaySIC"; version="1.0"; sha256="023ji6q1nvksmhp3ny8ad39xxccc0a1rv9iaiaagwavgzzc0pjd9"; depends=[fields poibin rjags]; }; - BayesBD = derive2 { name="BayesBD"; version="0.1"; sha256="0m4y74ijbamqq2cxq7i7i5rkcbx1glbhwm01c1jxkff7m2f1892n"; depends=[plotrix]; }; + BayesBD = derive2 { name="BayesBD"; version="1.1"; sha256="0wkkk69841vfbwc10s0kvcvx87pnafgx4lr4d2nvqq3v4sw1d2v2"; depends=[Rcpp RcppArmadillo shiny]; }; + BayesBinMix = derive2 { name="BayesBinMix"; version="1.4"; sha256="09jb8g273xf72wmrgqmajypszl1dyqab9wldb08aqlqf3d3rp1lw"; depends=[coda doParallel foreach label_switching]; }; BayesBridge = derive2 { name="BayesBridge"; version="0.6"; sha256="1j03m465pwq0lhbrfvddjglrzs6px7bc89yvfzj776amm7myqd0l"; depends=[]; }; BayesCR = derive2 { name="BayesCR"; version="2.0"; sha256="0cafind5vz81ryw1c7324hyfc6922fsxmjnvddb4mrhis54id2r4"; depends=[mnormt mvtnorm Rlab rootSolve truncdist]; }; + BayesCombo = derive2 { name="BayesCombo"; version="1.0"; sha256="01rzjja0xzvqyjivl8a9da13v13ylm4dwv4f27cmgz2znakfg5y8"; depends=[]; }; BayesComm = derive2 { name="BayesComm"; version="0.1-2"; sha256="1rrbvwcfm93cw0m33g0zn6nyshfjc97kb3fby9cga0zaixc0a8rk"; depends=[abind coda mvtnorm Rcpp RcppArmadillo]; }; BayesDA = derive2 { name="BayesDA"; version="2012.04-1"; sha256="0fp27cmhw8dsxr4mc1flm6qh907476kph8ch2889g9p31xm1psjc"; depends=[]; }; + BayesFM = derive2 { name="BayesFM"; version="0.1.2"; sha256="0fiw2x29cpv3prywsbvs1m8a588s2wpi3bwzzjisi2rafbl619xd"; depends=[checkmate coda ggplot2 gridExtra plyr]; }; BayesFactor = derive2 { name="BayesFactor"; version="0.9.12-2"; sha256="17zfs8bmzp59zaxzcrzis2sxdnqxrv9h1kpb22112mp9l1alvwl4"; depends=[coda gtools Matrix MatrixModels mvtnorm pbapply Rcpp RcppEigen stringr]; }; BayesGESM = derive2 { name="BayesGESM"; version="1.4"; sha256="0qw2byb48f67461m1k8a1rqh6a0c3zq1rc4ni9xzxv8dih4wkq0f"; depends=[Formula GIGrvg normalp]; }; + BayesH = derive2 { name="BayesH"; version="1.0"; sha256="0mjd1i3rkhyq3qcalq0ing0ap0igbhyvczaihl4pcfidgs70bci3"; depends=[]; }; BayesLCA = derive2 { name="BayesLCA"; version="1.7"; sha256="0lsqgjqal9092v1wr07p8g5cqm24k2d80sp7hlr7r1xknakmm1b6"; depends=[coda e1071 fields MCMCpack nlme]; }; - BayesLogit = derive2 { name="BayesLogit"; version="0.5.1"; sha256="0nr215wzhqlfi32617mmqb6i3w5x1kh5fiy68k0xzdqjsyjr65m0"; depends=[]; }; + BayesLogit = derive2 { name="BayesLogit"; version="0.6"; sha256="0jygw6wkmb6887qglzhl525v56kb0y8ig0w56dywbd8dmsv967z7"; depends=[]; }; BayesMAMS = derive2 { name="BayesMAMS"; version="0.1"; sha256="1qq3j9nm0k58gpyfavz77v1dwghy8pmpk0v52cj7l8sb3a3aiinm"; depends=[mvtnorm]; }; BayesMed = derive2 { name="BayesMed"; version="1.0.1"; sha256="1ysc7sh0drqxbisi2dz6gj4jlw6qsd879bbhr5pra7nxgmk4h650"; depends=[MCMCpack polspline QRM R2jags]; }; - BayesMixSurv = derive2 { name="BayesMixSurv"; version="0.9"; sha256="0hqkqpzk21d2zh7pyn042w1s51wyszkmam0rwzgy0i9i51zjxwvz"; depends=[survival]; }; + BayesMixSurv = derive2 { name="BayesMixSurv"; version="0.9.1"; sha256="19kf39881q00pap9afwvvggk4s4w3qpz17b7065nig1mvk8dnp8r"; depends=[survival]; }; BayesNI = derive2 { name="BayesNI"; version="0.1"; sha256="0zvr6rkb5zxgl53xby69d0j3yrfnlcmac6kwkxz77q5616w9dwq0"; depends=[]; }; + BayesPieceHazSelect = derive2 { name="BayesPieceHazSelect"; version="1.1.0"; sha256="0znbmv7crqycdx75jh02h6z8d6cifjszbrldv2yva4mkjxsydag5"; depends=[mvtnorm]; }; + BayesPiecewiseICAR = derive2 { name="BayesPiecewiseICAR"; version="0.2.1"; sha256="1qrmw7zmygdzz84p76hyh2d8dx88b8xhbbd7radqm39g35zq5wz6"; depends=[mvtnorm]; }; + BayesS5 = derive2 { name="BayesS5"; version="1.22"; sha256="18bs9kgpk7qg1hqdk7av0ygmrkn19nmrdprxf5syy0iqj5l3y13q"; depends=[abind Matrix snowfall]; }; BayesSAE = derive2 { name="BayesSAE"; version="1.0-1"; sha256="09s7f472by689b2b0gahnkhyjriizpsx6r5qa95nf3f4bfqi2cpf"; depends=[coda Formula lattice]; }; BayesSingleSub = derive2 { name="BayesSingleSub"; version="0.6.2"; sha256="0hgmyhg4mpxx7k91hbfa9h3533mqyn9rz4kl9kb30cc9g7g0m045"; depends=[coda MCMCpack mvtnorm]; }; + BayesSpec = derive2 { name="BayesSpec"; version="0.5.3"; sha256="17gchdijcjhbr2y4glbq9szjh4qmgivzh6p4fllh589da18nzjcr"; depends=[mvtnorm pscl trust]; }; BayesSummaryStatLM = derive2 { name="BayesSummaryStatLM"; version="1.0-1"; sha256="05mlgyi4fglvjkpqyw3vcjpipqllx37svcb20c1mrsa46m6fm4s7"; depends=[ff mvnfast]; }; - BayesTree = derive2 { name="BayesTree"; version="0.3-1.3"; sha256="1wa72mzy1mxw64r1hzadimz0ngi6ng7sbgak7g55rbgj8bmj02yk"; depends=[nnet]; }; + BayesTree = derive2 { name="BayesTree"; version="0.3-1.4"; sha256="0saca1ln582szqzc2c78z24b1lszzhc9hvsin73kb7r2dlg5ciii"; depends=[nnet]; }; + BayesTreePrior = derive2 { name="BayesTreePrior"; version="1.0.1"; sha256="13igmvw1wj8kzfijzsrhdqr52kv4vqrm91i71ay6f7jnkry3spaw"; depends=[]; }; BayesValidate = derive2 { name="BayesValidate"; version="0.0"; sha256="1gli65avpkb90asx92l1yjbwaxcsyb920idyjwgd2sl2b3l657ly"; depends=[]; }; - BayesVarSel = derive2 { name="BayesVarSel"; version="1.6.2"; sha256="1sc26rwa1z1wf8qs21js8xbna51vknd4jcdhvikn8s0i5413l85y"; depends=[MASS]; }; + BayesVarSel = derive2 { name="BayesVarSel"; version="1.7.0"; sha256="10w9l8jz7j72npl0z2smngrsmb4ga88gn37ps1xn3fyql999iz7d"; depends=[MASS mvtnorm]; }; BayesX = derive2 { name="BayesX"; version="0.2-9"; sha256="0p170m8zkaspiah1fdyql9lj9yqg6sl525blzq7wwgx5wx4rvncs"; depends=[coda colorspace maptools shapefiles sp]; }; BayesXsrc = derive2 { name="BayesXsrc"; version="2.1-2"; sha256="114804f6maak5dmwzw4cbigjcdw7c6sgx48af35yrvkspi1gsz3b"; depends=[]; }; BayesianAnimalTracker = derive2 { name="BayesianAnimalTracker"; version="1.2"; sha256="1pgjijqznfdpvw296h5vksnxgspxs7qhy6s84ww7abnlhg59bz5s"; depends=[TrackReconstruction]; }; + BayesianNetwork = derive2 { name="BayesianNetwork"; version="0.1.1"; sha256="1vclgdqqldkwhiilv44ihflbadllna5hvggbjbpz0r3365alnmq6"; depends=[bnlearn d3heatmap lattice networkD3 rhandsontable shiny shinydashboard]; }; + BayesianTools = derive2 { name="BayesianTools"; version="0.1.0"; sha256="195y5jwbdmi9m4vbxmcc3yw8gx2ay2vgwxsa29yb3sy542wiy0ii"; depends=[coda ellipse emulator IDPmisc MASS Matrix msm mvtnorm numDeriv Rcpp vioplot]; }; Bayesianbetareg = derive2 { name="Bayesianbetareg"; version="1.2"; sha256="0imsz2761ngbnap0vnxks9527la51m5g8gkkn1vrgwis43i6qcgs"; depends=[betareg mvtnorm]; }; Bayesthresh = derive2 { name="Bayesthresh"; version="2.0.1"; sha256="0w26h1ragqcg1i4h7c2y6vd8fig2jb2zrnvvchgg5z2hg9qdplsf"; depends=[coda lme4 MASS matrixcalc mvtnorm VGAM]; }; BaylorEdPsych = derive2 { name="BaylorEdPsych"; version="0.5"; sha256="1kq6nvzdqwawygp7k62lw5hyccsj81jg82hq60yidgxnmmnnf7y2"; depends=[]; }; BcDiag = derive2 { name="BcDiag"; version="1.0.10"; sha256="1gyinmx5wn2kk70hiy28ghilkhfirfjbfqdrqq5h3wfb4khnq6pz"; depends=[fabia]; }; - Bchron = derive2 { name="Bchron"; version="4.1.2"; sha256="0pljizj3689mxvsj62mhcy1zvcx7s41vsr5fawz9hij91nq1b8yi"; depends=[coda ellipse hdrcde inline MASS mclust]; }; - Bclim = derive2 { name="Bclim"; version="2.3.1"; sha256="160c9v83bpik73yjj45lr8sdgl8v4ymlkqw424ncc3lficyhvfjg"; depends=[hdrcde MASS mclust statmod]; }; + Bchron = derive2 { name="Bchron"; version="4.2.6"; sha256="0i77a72cq6ddpfgs2p0f3bskb03428jxxyq8chjyirsws1amzp92"; depends=[coda ellipse inline MASS mclust]; }; + Bclim = derive2 { name="Bclim"; version="3.1.2"; sha256="0dd4fx3rlljj3zb1m8q1bam1bswg497l3y8k0h0mkvjn94b4jbag"; depends=[ggplot2 MASS mclust statmod]; }; Benchmarking = derive2 { name="Benchmarking"; version="0.26"; sha256="00w7a16lhra6rjylyj26q67mvgbc3wa27a2wmiwjz5yh7wdnh193"; depends=[lpSolveAPI ucminf]; }; BenfordTests = derive2 { name="BenfordTests"; version="1.2.0"; sha256="1nnj0w0zwcmg7maqmmpixx7alvsyxva370ssc26ahg6kxy5a621w"; depends=[]; }; Bergm = derive2 { name="Bergm"; version="3.0.1"; sha256="1ngxqpagf8snnwdm82bg8yxbf1zpzd99g32fhw9l4gjx77kpkhl2"; depends=[coda ergm mvtnorm network]; }; - BerlinData = derive2 { name="BerlinData"; version="1.0.1"; sha256="1shhx4pisi139sc0siawa7gp9psfgxm58qijg5m65nihv7spki75"; depends=[rjson stringr XML]; }; Bessel = derive2 { name="Bessel"; version="0.5-5"; sha256="1apcpwqgnbsn544x2mfjkp4136xn33pijazmbzas7lr14syl5a6b"; depends=[Rmpfr]; }; + BetaBit = derive2 { name="BetaBit"; version="1.3"; sha256="1x9mfnijgi8726p82d52g2zgmliwsc97v2g96mz9ccz2vqqnwq4w"; depends=[digest]; }; + BeviMed = derive2 { name="BeviMed"; version="3.0"; sha256="0mm1n9lmx03cmwdm3nwj7x42sa24vnahhxizykfd1npcfm9zz5ij"; depends=[Rcpp]; }; Bhat = derive2 { name="Bhat"; version="0.9-10"; sha256="1vg4pzrk3y0dk1kbf80mxsbz9ammkysh6bn26maiplmjagbj954v"; depends=[]; }; + BiBitR = derive2 { name="BiBitR"; version="0.2.2"; sha256="13v8kwf8rnagf978v26a5qn19x44lzdz61n80rw8vxi2ydxbdbr9"; depends=[biclust foreign]; }; BiDimRegression = derive2 { name="BiDimRegression"; version="1.0.6"; sha256="1kgrk4xanvxqdq619ha08wwplmsn2xqygx4dziagx48iqfpp1lxj"; depends=[nlme]; }; - BiSEp = derive2 { name="BiSEp"; version="2.0.1"; sha256="15sn9kxs0mb98kclfpif90c808a1365gdj2j332sxi07f64pb87q"; depends=[AnnotationDbi GOSemSim mclust]; }; - BiTrinA = derive2 { name="BiTrinA"; version="1.1"; sha256="1isq7dffzchllynj2pifjaw2vjkhclqjk2xh6kbnh9cxca16s0kq"; depends=[diptest]; }; + BiSEp = derive2 { name="BiSEp"; version="2.2"; sha256="1ha7rc1q54dr2xl4bpkiwl703igmmi9qphsgv2h0flq7iz0gr351"; depends=[AnnotationDbi GOSemSim mclust]; }; + BiTrinA = derive2 { name="BiTrinA"; version="1.2"; sha256="0q2wqxj2ipmppilhvq80cnvhnhcp26h422i8ghx26nrkswhx378s"; depends=[diptest]; }; BiasedUrn = derive2 { name="BiasedUrn"; version="1.07"; sha256="13i2lgfnjhlbbm2yxfc2l5hswqw6x03pwba5csjmirv8kpjw4xr3"; depends=[]; }; + BigQuic = derive2 { name="BigQuic"; version="1.1-7"; sha256="1bhi9dilrprgjvqyc2hb4a0y8rm9la0m5lgry9mf184p56z1syzb"; depends=[Matrix Rcpp scalreg]; }; + BigSEM = derive2 { name="BigSEM"; version="0.2"; sha256="091fdibcxd8a8kf9k4pvc1sah830wh179f28gag9g816h4qclnx9"; depends=[MASS parcor]; }; BigTSP = derive2 { name="BigTSP"; version="1.0"; sha256="1jdpa8rcnrhzn0hilb422pdxprdljrzpgr4f26668c1vv0kd6k4v"; depends=[gbm glmnet randomForest tree]; }; - BinNonNor = derive2 { name="BinNonNor"; version="1.2"; sha256="15bzpi2q2428661v8z9izp942ihffgq8dgh4fsnzllvdrpqcyc41"; depends=[BB corpcor Matrix mvtnorm]; }; - BinNor = derive2 { name="BinNor"; version="2.0"; sha256="0c1qy93ccgzg8g25wm1j4ninsa0ck4y3jjh25za92w070cqhkd8m"; depends=[corpcor Matrix mvtnorm psych]; }; - BinOrdNonNor = derive2 { name="BinOrdNonNor"; version="1.0"; sha256="1x231xxdiyp6nwj2dx9w1shi5w6mdyzg43g5zc4r2bpvzccgj0l0"; depends=[BB corpcor GenOrd Matrix mvtnorm OrdNor]; }; - Binarize = derive2 { name="Binarize"; version="1.1"; sha256="07r41n5123pk6nwdwajgw6m3w38kprf4ksinx4rjldd8h1yd6rik"; depends=[diptest]; }; + BigVAR = derive2 { name="BigVAR"; version="1.0.1"; sha256="1hsx6fl3zjxfhjr18h2gbhgh0zzh9mdmr3zh0jnbfk8wv3y1nhxv"; depends=[lattice MASS Rcpp RcppArmadillo RcppEigen zoo]; }; + BinNonNor = derive2 { name="BinNonNor"; version="1.3"; sha256="0lxhfys066wz8svr9mjb28rd85lhjicqw4py4j96w9zgi974ha51"; depends=[BB corpcor Matrix mvtnorm]; }; + BinNor = derive2 { name="BinNor"; version="2.1"; sha256="14b90y40wzqwaf1v1l92s17j0kggbcsg5c90l1r7wi3j4xcl20pc"; depends=[corpcor Matrix mvtnorm psych]; }; + BinOrdNonNor = derive2 { name="BinOrdNonNor"; version="1.2"; sha256="196mn1ldbj4ngrrvr3d8aqwdjcprpjh0z66655vbzqb9m3nj893l"; depends=[BB corpcor GenOrd Matrix mvtnorm OrdNor]; }; + Binarize = derive2 { name="Binarize"; version="1.2"; sha256="014iagr76y3v7ljn6zlbg1hxwbwdi889bqxa7hwmqrcybnla22ja"; depends=[diptest]; }; BinaryEMVS = derive2 { name="BinaryEMVS"; version="0.1"; sha256="1ainp6pg481yqhjc4f1pkxzxczbi3qm0kgq280vndq859ldfkpnh"; depends=[]; }; - BinaryEPPM = derive2 { name="BinaryEPPM"; version="1.0"; sha256="088yg07966g09gv9hznhwfdka4yk0c9j0viy9x4ldmhxl9w9scv5"; depends=[expm Formula numDeriv]; }; - BioFTF = derive2 { name="BioFTF"; version="1.0-0"; sha256="0k5n82g633gdnyp7rmmm0gvmkhfjgm3frw4shhy0v1jlcvlp9v6n"; depends=[]; }; + BinaryEPPM = derive2 { name="BinaryEPPM"; version="2.0"; sha256="08w5zcyrfz55x86nwpb4k0w0lpk1ncirjp30p46421w0xz8swk10"; depends=[expm Formula lmtest numDeriv]; }; + BioFTF = derive2 { name="BioFTF"; version="1.2-0"; sha256="03r6fhpc4dqrcnbl73j9kav1l7rblgfldpbkl2p367vv20xggqih"; depends=[]; }; BioGeoBEARS = derive2 { name="BioGeoBEARS"; version="0.2.1"; sha256="0wyddc5ma47ljpqipfkwsgddp12m9iy4kqwwgklyhf0rqia56b1h"; depends=[ape cladoRcpp FD gdata optimx phylobase plotrix rexpokit xtable]; }; BioMark = derive2 { name="BioMark"; version="0.4.5"; sha256="1ifc72bayy3azbilajqqzl0is6z7l1zaadchcg3n8lhmjrv5sk3m"; depends=[glmnet MASS pls st]; }; + BioPET = derive2 { name="BioPET"; version="0.2.1"; sha256="0pwkgffm8hlgvpk3dfzskl50kp9b4rnxc8aj119kwrmlfazhhl50"; depends=[ggplot2 gridExtra pROC VGAM]; }; BioPhysConnectoR = derive2 { name="BioPhysConnectoR"; version="1.6-10"; sha256="1cc22knlvbvwsrz2a7syk2ampm1ljc44ykv5wf0szhnh75pxg13l"; depends=[matrixcalc snow]; }; BioStatR = derive2 { name="BioStatR"; version="2.0.0"; sha256="1k3z337lj8r06xgrqgi5h67hhkz2s5hggj6dhcciq26i1nzafsw6"; depends=[ggplot2]; }; Biocomb = derive2 { name="Biocomb"; version="0.2"; sha256="1igav8l1s4byannhkdm5fznqrga6cv9ws1lxyam221h8cl3qz8aw"; depends=[arules class discretization e1071 FSelector gtools MASS nnet pamr pROC randomForest Rcpp rgl ROCR rpart RWeka]; }; Biodem = derive2 { name="Biodem"; version="0.4"; sha256="0k0p4s21089wg3r3pvyy9cxsdf4ijdl598gmxynbzvwpr670qnsh"; depends=[]; }; - BiodiversityR = derive2 { name="BiodiversityR"; version="2.6-1"; sha256="181pz4zjx0kvj5m688g8ffaywa60mssgmkl0w60r8195sj80c3y5"; depends=[Rcmdr vegan]; }; + BiodiversityR = derive2 { name="BiodiversityR"; version="2.8-0"; sha256="0jfnwa7abwrharlwv9v9fdb5dq3mb74wjsc3ak9lp00s8nlj7jl0"; depends=[Rcmdr vegan]; }; + Biograph = derive2 { name="Biograph"; version="2.0.6"; sha256="0vklqwbifbac3v9ws9fs22yxpqqk5b3m96qzr8j0irnimb5kgh5p"; depends=[Epi etm ggplot2 lubridate msm mstate mvna plyr reshape survival]; }; + Biolinv = derive2 { name="Biolinv"; version="0.1-1"; sha256="1fnx9fcybw8agc2zba61lk4ygq8qi3b747i5cnh1b3vh6dw5fapq"; depends=[classInt fields raster sp spatstat]; }; + BivRegBLS = derive2 { name="BivRegBLS"; version="1.0.0"; sha256="1fi399vv54dnfywxbc8yb1r58lrl7zpqkahvcx3f5svjy20dvvbw"; depends=[ellipse]; }; + BivUnifBin = derive2 { name="BivUnifBin"; version="1.1"; sha256="0dxkk3pjnbjx04r9870lcr3hl4r5j7cd3y1fn800fz0qjnv5dahd"; depends=[BinOrdNonNor rootSolve]; }; BivarP = derive2 { name="BivarP"; version="1.0"; sha256="08f7sphylaj3kximy1avaf29hxj2n800adsnssh01p9bcxnzb2i4"; depends=[copula dfoptim survival]; }; BlakerCI = derive2 { name="BlakerCI"; version="1.0-5"; sha256="16zj678qzwqih92q19dma7a602d0hif2dhii5hvxdgjymg7hg2bj"; depends=[]; }; BlandAltmanLeh = derive2 { name="BlandAltmanLeh"; version="0.3.1"; sha256="11p30zqb3f9ifk3v18dspg18sclz5zxjygy7hw8ccb4bcqhx68lm"; depends=[]; }; - Blaunet = derive2 { name="Blaunet"; version="2.0.1"; sha256="0zpx4l5ig0xjnpsgw24b01nnf8w0aw6imjsg9715rm0qswa0jq5y"; depends=[network]; }; + Blaunet = derive2 { name="Blaunet"; version="2.0.4"; sha256="195ijmn3y9rzcincvjwivaclbs0d9bglb83ss62yfjzw2jpfvc54"; depends=[network]; }; BlockMessage = derive2 { name="BlockMessage"; version="1.0"; sha256="1jrcb9j1ikbpw098gqbcj29yhffa15xav90y6vpginmhbfpwlbf4"; depends=[]; }; Blossom = derive2 { name="Blossom"; version="1.4"; sha256="0002rvz0mlwl2clglzqldg0x5l8lj07qh74ifpdaf1lrdailh328"; depends=[]; }; Bmix = derive2 { name="Bmix"; version="0.6"; sha256="17swhn2p7jv29fkspacg2v181lkc9yd3xww2fx31xs8hsndcm857"; depends=[mvtnorm]; }; - BoSSA = derive2 { name="BoSSA"; version="1.2"; sha256="191hq0np9iadks4sflg360k64xnz8j956y30pqzwciinb4hgq1nr"; depends=[ape SoDA]; }; + BoSSA = derive2 { name="BoSSA"; version="2.0"; sha256="1cj2k8ra26mnnvn3gqwl3z6qr9sy63rnszgb3a9y6dh4dkgk6hd2"; depends=[ape jsonlite RSQLite]; }; + BoardGames = derive2 { name="BoardGames"; version="1.0.0"; sha256="1w3ghs29qlnjrd46lvv055snclwwy6a22fgdqszqm377w4favnhm"; depends=[]; }; + Bolstad = derive2 { name="Bolstad"; version="0.2-33"; sha256="1i01bfcmzpy9i3f3x0pmw2c6ff4zx4vk13isdnvkhbbks6ppm394"; depends=[mvtnorm]; }; Bolstad2 = derive2 { name="Bolstad2"; version="1.0-28"; sha256="08cfadvl9jl9278ilsf8cm2i2a3i8zsa2f3vjzw2nlv85fwi2c7v"; depends=[]; }; BonEV = derive2 { name="BonEV"; version="1.0"; sha256="0lmgrg53b0abb5hidyjjmwn7lf2ani84k9fil7g6j6mdajjhh1b7"; depends=[qvalue]; }; - BoolNet = derive2 { name="BoolNet"; version="2.1.1"; sha256="0g8f2pv8s8kj84qcp2fy3h8p91ja6ap2dgxkdaf5kjv7r3hfddg0"; depends=[igraph XML]; }; - Boom = derive2 { name="Boom"; version="0.3"; sha256="0j5j4x77fqwgc6f6d91v02niq4mrdfi0x5id0mq9zdha0rnidcky"; depends=[BH MASS]; }; - BoomSpikeSlab = derive2 { name="BoomSpikeSlab"; version="0.5.3"; sha256="0932jwc7bz84lryzaxd4lncqbkc3d0v2yh22dvryz2hf59a2a5lj"; depends=[BH Boom]; }; + BoolFilter = derive2 { name="BoolFilter"; version="1.0.0"; sha256="14z4fzf8p4wgi939qs6v39a3xizccjcx7j4szsydllpkvxbwggbw"; depends=[BoolNet Rlab]; }; + BoolNet = derive2 { name="BoolNet"; version="2.1.3"; sha256="1s64a46wfp31jsyfdg2m8269qaq7x798y2bj0dyk69di1nxx2daa"; depends=[igraph XML]; }; + Boom = derive2 { name="Boom"; version="0.5"; sha256="1p1bgswzjply3afcgxdn67dq3gb46i9gxwm1l2v79wjpiizhagrb"; depends=[BH MASS]; }; + BoomSpikeSlab = derive2 { name="BoomSpikeSlab"; version="0.7.0"; sha256="08xb931q3j16r4942p7r6cl4capc19nbywzg4hr7yv0fzcmpjprb"; depends=[BH Boom]; }; + BootMRMR = derive2 { name="BootMRMR"; version="0.1"; sha256="07am80603pv1dh5ma3zb0idnslkzm5m3ym8sd1nhkh8zbc6qqmzs"; depends=[]; }; BootPR = derive2 { name="BootPR"; version="0.60"; sha256="03zw7hz4gyhp6iq3sb03pc5k2fhvrpkspzi22zks25s1l7mq51bi"; depends=[]; }; - Boruta = derive2 { name="Boruta"; version="5.0.0"; sha256="0sz9rbpxwjaz3l4kx4b616x2kfb2szv8s1qk4qv05smqf34hf8rw"; depends=[ranger]; }; + BootWPTOS = derive2 { name="BootWPTOS"; version="1.2"; sha256="1860l11xg7444l3x42rq3636csla23gg0mi5in1zibjwn1ddc202"; depends=[fractal wavethresh]; }; + Boruta = derive2 { name="Boruta"; version="5.2.0"; sha256="111rp7lbq79p7c1w4dkzhb9wh32mns5p17xxq0qbjzaiv41377dy"; depends=[ranger]; }; BradleyTerry2 = derive2 { name="BradleyTerry2"; version="1.0-6"; sha256="1080q7fw4yfl2y0jh3w2xz342i5yhhhavq40i3902bsmjj8g531d"; depends=[brglm gtools lme4]; }; - BrailleR = derive2 { name="BrailleR"; version="0.24.1"; sha256="181s8rz5n9yvnsg3nj7n43giyjiabrk3j1bl64z7aq3x15cx0xqs"; depends=[devtools extrafont gridGraphics gridSVG knitr moments nortest pander rmarkdown xtable]; }; + BrailleR = derive2 { name="BrailleR"; version="0.24.2"; sha256="07kd9x176gd3ccpskv7vn22jam1pknsywcd09qj7l4zfbv9l0rqx"; depends=[devtools extrafont gridGraphics gridSVG knitr moments nortest pander rmarkdown xtable]; }; + Branching = derive2 { name="Branching"; version="0.9.4"; sha256="1c209gdasm7qipv2gg4d1hr0jmhnzz5rddgjxb7xacazc0c2mhff"; depends=[]; }; Brobdingnag = derive2 { name="Brobdingnag"; version="1.2-4"; sha256="1saxa492f32f511vw0ys55z3kgyzhswxkylw9k9ccl87zgbszf3a"; depends=[]; }; BsMD = derive2 { name="BsMD"; version="2013.0718"; sha256="1yvazqlbmm221r7nkhrhi309gkk6vx7ji5xlvf07klya2zg20gcj"; depends=[]; }; BurStFin = derive2 { name="BurStFin"; version="1.02"; sha256="16w2s0bg73swdps9r0i8lwvf1najiqyx7w7f91xrsfhmnqkkjzka"; depends=[]; }; - BurStMisc = derive2 { name="BurStMisc"; version="1.00"; sha256="0718a1p7iiqkfhhmnzxggc6hd8sm847n1qh7rfbdl8b0k0bgvnj0"; depends=[]; }; + BurStMisc = derive2 { name="BurStMisc"; version="1.1"; sha256="0cyi42zkn2dby162x9f95b3hpqxbzx25s7nahb4p86r60xj3a5c0"; depends=[]; }; + BuyseTest = derive2 { name="BuyseTest"; version="1.0"; sha256="1nfj2ajah2dg1p47g2z0zf9s24sxj4dfn3nny1h4qmqwcb4vs55g"; depends=[data_table lava Rcpp RcppArmadillo snowfall survival]; }; C50 = derive2 { name="C50"; version="0.1.0-24"; sha256="17ay0rbm2cg2s27mh09xg0knk7idx6f761sc849m41vsc6pfhzk1"; depends=[partykit]; }; CADFtest = derive2 { name="CADFtest"; version="0.3-2"; sha256="00nsnzgjwkif7mbrw7msswjxhi9aysjdx3qg3i4mdmj1rmp7c4dc"; depends=[dynlm sandwich tseries urca]; }; - CALF = derive2 { name="CALF"; version="0.1.1"; sha256="1ikmlf6fkma2q281m012ifbxfavx4cywvf0igs4fxpkd7jm9frff"; depends=[]; }; + CADStat = derive2 { name="CADStat"; version="3.0.6"; sha256="1qzy93fzzj4b0x0m9rrlh1wmv44rd9kvjw6wkdd3m3l2qbqsbzn8"; depends=[bio_infer car gdata gmodels JavaGD JGR lattice MASS quantreg rJava rpart XML]; }; + CALF = derive2 { name="CALF"; version="0.1.3"; sha256="0407k1afyaknlvhn5gx909vp4jl5n25r9jyqkhx9zqhzllrj25f2"; depends=[ggplot2]; }; CALIBERrfimpute = derive2 { name="CALIBERrfimpute"; version="0.1-6"; sha256="036nwnday098mawc9qlgl3jjjcdjnja1immg6xkq27hvv2xfbz82"; depends=[mice mvtnorm randomForest]; }; CAM = derive2 { name="CAM"; version="1.0"; sha256="07mmrz6j8cm6zgaw2zcxgkxb7abd651kb80526r271snjgvpr5bl"; depends=[glmnet Matrix mboost mgcv]; }; - CAMAN = derive2 { name="CAMAN"; version="0.73"; sha256="0acksmgi7g0nngq5wcyrxzplxk6h8yi0s1q1pdkqna8dyriw7ih1"; depends=[mvtnorm sp]; }; + CAMAN = derive2 { name="CAMAN"; version="0.74"; sha256="0d932fbqzlxlhn7m8zfx7wr02pc7fm8398rym1jh2cdy2fk5im08"; depends=[mvtnorm sp]; }; CANSIM2R = derive2 { name="CANSIM2R"; version="0.11"; sha256="12d5558b3wldla3sgwqdqwmfixcqfa8h92bq4a8ia284946vcbbf"; depends=[Hmisc reshape2]; }; - CARBayes = derive2 { name="CARBayes"; version="4.4"; sha256="0ab259mglhli6443mgxsgzfmi7wam6m1498lc5ihha4px05cbkl0"; depends=[CARBayesdata coda MASS Rcpp sp spam spdep truncdist]; }; - CARBayesST = derive2 { name="CARBayesST"; version="2.2"; sha256="0kcx708g88hm70ss73cry4h4w2j32bj65rxn31sjfghgsnvd7fp6"; depends=[coda MASS Rcpp spam spdep truncdist]; }; - CARBayesdata = derive2 { name="CARBayesdata"; version="1.0"; sha256="19dhgkqpdcq1y866arb3qm7wbl348w66yl85kwajkmqgplx2pvaq"; depends=[shapefiles sp]; }; + CARBayes = derive2 { name="CARBayes"; version="4.7"; sha256="0frpkq0hqxmdzv5hliyvw3g8cb26llnh9wjabqqm0sdpnzx64d37"; depends=[CARBayesdata coda MASS matrixcalc MCMCpack Rcpp sp spam spdep truncnorm]; }; + CARBayesST = derive2 { name="CARBayesST"; version="2.4"; sha256="1z0w4cbs3gbll4fzcmg4vgbnx0bq15nb1c69aql4mdqm6i0zx6xr"; depends=[CARBayesdata coda dplyr MASS matrixcalc Rcpp sp spam spdep truncdist]; }; + CARBayesdata = derive2 { name="CARBayesdata"; version="2.0"; sha256="0mlqlqm50k4lqyvbjva7vji9jqa3rwi5ky5521rp5l4nqlj53sfb"; depends=[shapefiles sp]; }; CARE1 = derive2 { name="CARE1"; version="1.1.0"; sha256="1zwl4zv60mrzlzfgd7n37jjlr0j918a8ji36n94s5xw8wwipiznw"; depends=[]; }; CARLIT = derive2 { name="CARLIT"; version="1.0"; sha256="04kpjfps4ydf8fj75isqp16g1asdsyf8nszhbfkpw1zxkrmiksyp"; depends=[]; }; CARrampsOcl = derive2 { name="CARrampsOcl"; version="0.1.4"; sha256="1sdrir7h7xl1imipm9b71vca062dxqsqd8mg3w9f3s80x2aghxl8"; depends=[fields OpenCL]; }; - CAvariants = derive2 { name="CAvariants"; version="3.1"; sha256="0plxkz8slvk824ziwxc27dricid3ddm18bsl3dvqprarh9l1r0ja"; depends=[]; }; - CBPS = derive2 { name="CBPS"; version="0.10"; sha256="0k3mb97d49r870dm7ac1nwhy4kvh0936jmka7ib03154jmzsfyn7"; depends=[MASS MatchIt nnet numDeriv]; }; + CATT = derive2 { name="CATT"; version="1.0"; sha256="1hnhzla14y0cii51pi53a42bmsxcqvylj88fyvgpfavmvz301f7d"; depends=[]; }; + CATkit = derive2 { name="CATkit"; version="3.0.0.2"; sha256="1afaa1s8clynpna9hwgbgfdp5jciv0n5q9vb27cgyl9n69nla991"; depends=[magic MASS png rtf season signal]; }; + CAvariants = derive2 { name="CAvariants"; version="3.3"; sha256="14ly5pyhvsbz08p0pk1ijwivz17jrnd0qqzn4n9jqzc9b8yml4dw"; depends=[]; }; + CBPS = derive2 { name="CBPS"; version="0.13"; sha256="16g62pvxd2njawk2sfaznhicy1dfxab3v1k0bfrzj5a4l1501l2z"; depends=[MASS MatchIt nnet numDeriv]; }; CCA = derive2 { name="CCA"; version="1.2"; sha256="00zy6bln22qshhlll0y0adnvb8wa1f7famqyws71b6pcnwxki5ha"; depends=[fda fields]; }; CCAGFA = derive2 { name="CCAGFA"; version="1.0.8"; sha256="1jxb6d1h5p97wnr45s1fsspksqn771nib415ihxi4vj5w8s94j8b"; depends=[]; }; CCM = derive2 { name="CCM"; version="1.1"; sha256="0gya1109w61ia6cq3jg2z5gmvjkv9xg71l2rxhrrf6bx1c2nsrq6"; depends=[]; }; CCMnet = derive2 { name="CCMnet"; version="0.0-3"; sha256="0mbw3yhlgnmq7q4wnwiff7rlmciq83cch7kkav3wll6nqvxcdiax"; depends=[ergm network sna]; }; CCP = derive2 { name="CCP"; version="1.1"; sha256="07jxh33pb8llk1gx4rc80ppi35z8y1gwsf19zrca9w91aahcs8cx"; depends=[]; }; - CCTpack = derive2 { name="CCTpack"; version="1.4"; sha256="09s2ysqsz158lrah44rwvs3nlhyqlvwcj6aar2p79flf4xxdwsvk"; depends=[MASS mvtnorm polycor psych R2jags rjags]; }; + CCTpack = derive2 { name="CCTpack"; version="1.5.1"; sha256="0j4c7w5jfixsjhpn460iai7q0dd9znchp1iv7dxvyqdm45149p36"; depends=[MASS mvtnorm polycor psych R2jags rjags]; }; CCpop = derive2 { name="CCpop"; version="1.0"; sha256="10kgw3b98r0kn74w89znq6skgk8b3ldil6yb0hn5rlcf6lazjzca"; depends=[nloptr]; }; + CDF_PSIdekick = derive2 { name="CDF.PSIdekick"; version="1.2"; sha256="1h2d5xh7zj3d8r63qndvd5c8z52byn1852b51zmj6ypc90fil25x"; depends=[Rcpp]; }; CDFt = derive2 { name="CDFt"; version="1.0.1"; sha256="0sc8ga48l3vvqfjq3ak5j1y27hgr5dw61wp0w5jpwzjz22jzqbap"; depends=[]; }; CDLasso = derive2 { name="CDLasso"; version="1.1"; sha256="0n699y18ia2yqpk78mszgggy7jz5dybwsi2y56kdyblddcmz1yv7"; depends=[]; }; - CDM = derive2 { name="CDM"; version="4.8-0"; sha256="0k99ppspr3k7lgjxqbnp2fwvpl3zidi1c0zzwwj7i4v29nbf4fiq"; depends=[lattice MASS mvtnorm plyr polycor psych Rcpp RcppArmadillo sfsmisc]; }; + CDM = derive2 { name="CDM"; version="5.4-0"; sha256="1gbzk9iijn37njal6fq70y6hhl44zgi79yb3lwp3cxys1j2fp0kw"; depends=[lattice MASS mvtnorm plyr polycor psych Rcpp RcppArmadillo sfsmisc]; }; CDNmoney = derive2 { name="CDNmoney"; version="2012.4-2"; sha256="1isbvfq0lygs75y1hn3klqms8q7g1xbkcr8fgj75h1c99d4khvm6"; depends=[]; }; - CDROM = derive2 { name="CDROM"; version="1.0"; sha256="0dnaviaw9zfkdss2mjk7mccgrfya70491hqzx6wdlpzspchzm9ni"; depends=[]; }; + CDROM = derive2 { name="CDROM"; version="1.1"; sha256="0mvhqs4m8jp39x1rk31a1sqqmfq1avcnasgh8bizlyxx62igmi1b"; depends=[]; }; CDVine = derive2 { name="CDVine"; version="1.4"; sha256="0cp78pb6yny4n5q2j9k6xdql588536572gbphnw8zkdmrg65qyz7"; depends=[igraph MASS mvtnorm]; }; - CEC = derive2 { name="CEC"; version="0.9.3"; sha256="05cgd281p0hxkni4nqb0d4l71aah3f3s6jxdnzgw8lqxaxz4194i"; depends=[]; }; - CEGO = derive2 { name="CEGO"; version="2.0.0"; sha256="1rsia7dnbc2hwrihdxdaspwm8xfvc7ryy3sgki801xv3la4nzk8p"; depends=[DEoptim MASS]; }; - CEoptim = derive2 { name="CEoptim"; version="1.1"; sha256="130x215lwm8lsygxnkykhiv80ry7srs9n77rcyjgxag9f1hn223x"; depends=[MASS msm sna]; }; + CEC = derive2 { name="CEC"; version="0.9.4"; sha256="194n190szwzxjxfdhiah1f50vp6n7f3q567yky7pq1x2hngna5rs"; depends=[]; }; + CEGO = derive2 { name="CEGO"; version="2.1.0"; sha256="141gr1sin6sgvjasm6sczvq2za25ybw7wapdljdx2lx7qhgq77rk"; depends=[DEoptim expm MASS Matrix quadprog]; }; + CEoptim = derive2 { name="CEoptim"; version="1.2"; sha256="0bbjrhl63cbx1rsr5gclbqhjpnjid8ynk2ygaf1chf8z381n7650"; depends=[MASS msm sna]; }; CFC = derive2 { name="CFC"; version="1.0.1"; sha256="0p4ijhks2jj9a417k9mp670q59d0wi3pfhqkx005cbsficynf0y2"; depends=[abind doParallel foreach Rcpp RcppArmadillo RcppProgress survival]; }; CGP = derive2 { name="CGP"; version="2.0-2"; sha256="1mggv3c8525vbdfdc3yhpp4vm4zzdvbwyxim29zj0lzwjf9fkgqk"; depends=[]; }; CHAT = derive2 { name="CHAT"; version="1.1"; sha256="1hl4xr4lkvb7r36gcbgax6ipqc3rsvn1r03w7fk9gf9bbyg7bkhg"; depends=[DNAcopy DPpackage]; }; CHCN = derive2 { name="CHCN"; version="1.5"; sha256="18n8f002w0p0l1s5mrrsyjddn10kdbb6b7jx1v9h1m81ifdbv0xb"; depends=[bitops RCurl]; }; - CHNOSZ = derive2 { name="CHNOSZ"; version="1.0.7"; sha256="1kvw3fpimfcjf49kk9vf8bdjd76z7g54i7hn4d71swm3p9zfyb7a"; depends=[]; }; + CHFF = derive2 { name="CHFF"; version="0.1.0"; sha256="0jv75p1bnwsad2vpxf1zwq97al9xxhk2hpnpsilf0jn0w7g9b2d3"; depends=[]; }; + CHNOSZ = derive2 { name="CHNOSZ"; version="1.0.8"; sha256="03hvvkm7i2q73hkcm79136lzjn99apqmcdlfghbz0318490gxin5"; depends=[]; }; CHsharp = derive2 { name="CHsharp"; version="0.4"; sha256="19mb5zzi9x4pm2z9jbha5dz4k5f1iqjv31aisyv4qh14k5ysdz2i"; depends=[KernSmooth scatterplot3d]; }; + CIAAWconsensus = derive2 { name="CIAAWconsensus"; version="1.1"; sha256="11cicxfvjhbrfjsczsv25xdy7pckmz1bnjx7xq5jbg3b1wbv4g28"; depends=[Matrix mvtnorm numDeriv stringr]; }; CIDnetworks = derive2 { name="CIDnetworks"; version="0.8.1"; sha256="0k75mdlvm0rccag42pnhsni1kihpqsnj5bsrwlj7hdf7n8k1xb77"; depends=[igraph MASS msm mvtnorm numDeriv pbivnorm Rcpp]; }; - CIFsmry = derive2 { name="CIFsmry"; version="1.0.1"; sha256="118vyiiy4iqn86n9xf84n5hrwrhzhr1mdsmyg9sm6qq6dm7zg6la"; depends=[]; }; + CIFsmry = derive2 { name="CIFsmry"; version="1.0.1.1"; sha256="1m2m2zvg9ghy3bm2sll7jp4xm2vw58kc5xaxd2c9k82771m3a4j0"; depends=[]; }; CINID = derive2 { name="CINID"; version="1.2"; sha256="0pkgzi2j0045p10kjvnq8f4j1agzrqfw0czvvfrzj9yjfpj8xc99"; depends=[]; }; CINOEDV = derive2 { name="CINOEDV"; version="2.0"; sha256="0fjpxahc55zd972p3hlw9fk4dq8hpq715xff8p98kfh29dvw9mnz"; depends=[ggplot2 igraph R_matlab reshape2]; }; CITAN = derive2 { name="CITAN"; version="2015.12-2"; sha256="08h91q7529q04izgqw3ahm4r0zjpwnwyc0vynykvv9fz2fkbk7wb"; depends=[agop DBI hash RGtk2 RSQLite stringi]; }; - CLME = derive2 { name="CLME"; version="2.0-4"; sha256="1ymaqvmq0ji82kb4c84a6fdz15ri797k9n218kawz21xvx8ilr7w"; depends=[isotone lme4 MASS nlme openxlsx prettyR shiny stringr]; }; + CLME = derive2 { name="CLME"; version="2.0-6"; sha256="0cd3sn6amariap04lhc2kwsdcj4i4axrx95xr10spykr8py4skmc"; depends=[isotone lme4 MASS nlme openxlsx prettyR shiny stringr]; }; CLSOCP = derive2 { name="CLSOCP"; version="1.0"; sha256="0rkwq9rl2ph4h5zwb2i3yphjyzxmh6b6k23a8gcczycx6xdq4yhw"; depends=[Matrix]; }; CMC = derive2 { name="CMC"; version="1.0"; sha256="1r9a5k79fyw01yiwxq02327hpn4l1v2lp0958jj9217wxmhn3pr5"; depends=[]; }; CMF = derive2 { name="CMF"; version="1.0"; sha256="0hvqcbmg2vd0i1rjb1m1bkrbv2vkj1siank1v8w0n5b6881cyz7q"; depends=[Rcpp]; }; CMPControl = derive2 { name="CMPControl"; version="1.0"; sha256="0cp29cibiydawsl0cq433l9abdivr16b431zlrh45wzr5kzfcs0v"; depends=[compoisson]; }; - CMplot = derive2 { name="CMplot"; version="3.0.3"; sha256="0j6flj176qy132xdj3jy1xpvb4qpwr5jbyxgp59diaqs5nnz33qy"; depends=[]; }; + CMplot = derive2 { name="CMplot"; version="3.1.4"; sha256="0ph8pqmlbm2j40dq4lqyfy43hz5s958vvqaglzmcqdvkgpv1ni0a"; depends=[]; }; CNOGpro = derive2 { name="CNOGpro"; version="1.1"; sha256="1frsmhfqrlg1vsa06cabqmrzngq4p5gqwyb9qgnsgg81a9ybm6l8"; depends=[seqinr]; }; - CNVassoc = derive2 { name="CNVassoc"; version="2.1"; sha256="0gwyhipkvvnivdahr9mkj1b8j9wzg6g8mcsvk5rq28xdzrskz0i8"; depends=[CNVassocData mclust mixdist survival]; }; + CNVassoc = derive2 { name="CNVassoc"; version="2.2"; sha256="0rvb5sl7kfyb9jp07w4zk8817s9xld9b2cb0m33lrs4kbsv7rpnx"; depends=[CNVassocData mclust mixdist survival]; }; CNVassocData = derive2 { name="CNVassocData"; version="1.0"; sha256="17r3b1w9i9v6llawnjnrjns6jkd82m2cn9c90aif8j0bf4dmgdli"; depends=[]; }; CNprep = derive2 { name="CNprep"; version="2.0"; sha256="08dpjikx3ldqzw2kwb12q0kbw15qzl09srjdfs0sz9si0x6bfxs6"; depends=[mclust rlecuyer]; }; COBRA = derive2 { name="COBRA"; version="0.99.4"; sha256="1r1cw12d7c148pcgcg08bfsr1q1s736kfpyyss6b4d7ny7wgmqy4"; depends=[]; }; + COCONUT = derive2 { name="COCONUT"; version="1.0.1"; sha256="1bpn1zhlbm99w8d80lp7iasi1ivvh0ndhpzh8glmnlnanm2b06ni"; depends=[]; }; + COMBAT = derive2 { name="COMBAT"; version="0.0.2"; sha256="1sda41db8h5gi7gqq0hj433dd6lh4xj75skjgmgqa3p80rndw461"; depends=[corpcor mvtnorm]; }; COMBIA = derive2 { name="COMBIA"; version="1.0-4"; sha256="02yadw3zjkj0ljq2c5k5zfsn8qnlvr6gxgafzrqw9g95cawv8q4x"; depends=[gdata hash lattice latticeExtra oro_nifti]; }; COMMUNAL = derive2 { name="COMMUNAL"; version="1.1.0"; sha256="1fv5dlqajpsd9k99sfikj3ai4jpzz2fh4s3gfglwrajk0nzlxjg2"; depends=[cluster clValid fpc]; }; COMPoissonReg = derive2 { name="COMPoissonReg"; version="0.3.5"; sha256="15w78h0kkqbisp34g4wj2mkq4c0pb2166f1m7s65iifnnd5plvb6"; depends=[]; }; CONDOP = derive2 { name="CONDOP"; version="1.0"; sha256="0si9nm93wk9lif3r6jh2nxr4sjq1iqyfavbykja3zcy6yn05i19s"; depends=[earth GenomeInfoDb GenomicRanges IRanges mclust plyr randomForest rminer S4Vectors seqinr]; }; + CONS = derive2 { name="CONS"; version="0.1.0"; sha256="1pcr1pfchys4x566sa69als59vwpaa91jhl038pkj69scchv0max"; depends=[FactoMineR gWidgets pander raster readxl REdaS]; }; CORE = derive2 { name="CORE"; version="3.0"; sha256="0wq9i7nscnzqiqz6zh6hglm7924261bw169q3x6l9i6jgqhvn32d"; depends=[]; }; - CORElearn = derive2 { name="CORElearn"; version="1.47.1"; sha256="0apsv6lam5a6miirhq6z0acm4xnynyskqp94cxvxpgkaaap2c55l"; depends=[cluster rpart]; }; + CORElearn = derive2 { name="CORElearn"; version="1.48.0"; sha256="1pm2gqns1d7yxv4i5h110b6s6i6an7xnz379n1cm8rcfnlpndryz"; depends=[cluster rpart]; }; CORM = derive2 { name="CORM"; version="1.0.2"; sha256="0g5plafx2h1ija8jd6rxvy8qsrqprfbwbi1kq1p4jdr9miha20nv"; depends=[cluster limma]; }; COSINE = derive2 { name="COSINE"; version="2.1"; sha256="10ypj849pmvhx117ph3k1jqa62nc4sdmv8665yahds7mh0ymhpjj"; depends=[genalg MASS]; }; - COUNT = derive2 { name="COUNT"; version="1.3.2"; sha256="1lb67gwznva5p046f4gjjisip5a12icp7d2g1ipizixw99c5lll8"; depends=[MASS msme sandwich]; }; + COUNT = derive2 { name="COUNT"; version="1.3.4"; sha256="02f7779fy0d2bql88x5v9csbxljhnyvl8wb8h83xrmwl7kaxsdpy"; depends=[MASS msme sandwich]; }; COUSCOus = derive2 { name="COUSCOus"; version="1.0.0"; sha256="1ykqi72v8v1b3g9qy6h34dvk5fynzf1rl2mby65p08axmaba5798"; depends=[bio3d matrixcalc]; }; - CP = derive2 { name="CP"; version="1.5"; sha256="0hzp4h7bhhxn336kkq27phplk7idwk27jjsp6zimwl8fq3ylh0dr"; depends=[survival]; }; + CP = derive2 { name="CP"; version="1.6"; sha256="18zblf13riiz3mq3hkvg6vhiwjzpsn6mvgc2p0bqyldy98v4aisd"; depends=[survival]; }; + CPBayes = derive2 { name="CPBayes"; version="0.1.0"; sha256="004n2s09b8wfg8aj7j400hvkbwxsxd27fyk72x6nnc8lkrpwzs5b"; depends=[MASS]; }; CPE = derive2 { name="CPE"; version="1.4.4"; sha256="09sqp2a0j43jr9ya9piv8575rwd5fdvwmiz4chv75r3mw8p128mn"; depends=[rms survival]; }; CPHshape = derive2 { name="CPHshape"; version="1.0.1"; sha256="05krqcd4spgghp3ihv1zfql6ikd64vkqnrjghjvfki3hi3zi5k7h"; depends=[]; }; CPMCGLM = derive2 { name="CPMCGLM"; version="1.1"; sha256="1w8yp37vxz2cl0yqdzpyxdfq2scz2h9i4crjzjmjzpzffi45f06s"; depends=[mvtnorm plyr]; }; CR = derive2 { name="CR"; version="1.0"; sha256="0smb2i560dwbxg3mp1svfxmaiw193pd3klwqq0i27czf07k1xfvj"; depends=[]; }; CRAC = derive2 { name="CRAC"; version="1.0"; sha256="0vnqmmmwakx5jnzqp20dng35p7rvmz3ypm2m7bs41m8nhh2wq1xa"; depends=[]; }; - CRF = derive2 { name="CRF"; version="0.3-8"; sha256="0w9wfjlx6hvd07k0iszfyip0vn0ca5ax2d5g7hsg6pm2isnzap8a"; depends=[Matrix Rglpk]; }; + CRF = derive2 { name="CRF"; version="0.3-14"; sha256="0xhjj76730yjlpwbhcpdzqp7s37a9rhf4adk1s7hfb0jm8b76fgh"; depends=[Matrix Rglpk]; }; CRM = derive2 { name="CRM"; version="1.1.1"; sha256="09h6xvqc2h2gxhdhc7592z93cnw16l549pn9i26ml0f0n20hljmf"; depends=[]; }; CRTSize = derive2 { name="CRTSize"; version="1.0"; sha256="1d45zx26bf0zk0piham69gvb8djqf48g6iisbldv0ds3s2hhcsin"; depends=[]; }; - CRTgeeDR = derive2 { name="CRTgeeDR"; version="1.1"; sha256="10gm6dmn8hwg5kbfvzdjfdvsv6ii0hn00512jchfj1f6gxxq5ha2"; depends=[ggplot2 MASS Matrix]; }; + CRTgeeDR = derive2 { name="CRTgeeDR"; version="1.2"; sha256="0dq5q1gb392imfgqhzqphc7h5af0qcx2vx4fh77gwpz08ycrlkmg"; depends=[ggplot2 MASS Matrix]; }; + CSclone = derive2 { name="CSclone"; version="1.0"; sha256="0lqsqsgh2sf44fr1r7g179556v294yr1wy7x4320g7adxshrwyh5"; depends=[DNAcopy lpSolve mcclust moments]; }; + CTM = derive2 { name="CTM"; version="0.2"; sha256="0h1lpygjq46nwkn4km49bngvxmgrnh3csrfln3yjr9yyzs7d3lz1"; depends=[jiebaR plyr]; }; CTT = derive2 { name="CTT"; version="2.1"; sha256="0v8k54x9pib6hq3nz3m80g1a3p003f7bn8wnj9swwvacc90d6n44"; depends=[]; }; CTTShiny = derive2 { name="CTTShiny"; version="0.1"; sha256="1c9vsiqyig6kfjpy3dfrysc466h4v9530m49aynz65i1njplswyh"; depends=[CTT ltm psych shiny shinyAce]; }; - CUB = derive2 { name="CUB"; version="0.0"; sha256="0a3iz90i0mshfxqykbfyrhmy45iyzh81r680hasvrbakqnm94a82"; depends=[]; }; - CUMP = derive2 { name="CUMP"; version="1.0"; sha256="0dbpgm75nbd4h8rf3ca5n4mgdn3qm4yyf2d48vlihakzw6rqbpka"; depends=[]; }; - CUSUMdesign = derive2 { name="CUSUMdesign"; version="1.1.1"; sha256="0ng0k6bkvgsrsgx0qj9mhhll837j0vixa2p24fjmcpi1dyjahgi5"; depends=[]; }; + CUB = derive2 { name="CUB"; version="1.0"; sha256="1csgsfxq80kh7s52f2658gs4c6nf1vpcmq0xizcjira2wnwpdzmv"; depends=[Formula]; }; + CUFF = derive2 { name="CUFF"; version="1.2"; sha256="11sqd84sq8rmbvx4mqvmfajxzsj68n286dgmv7vm9lkmvc7765bs"; depends=[openxlsx xtable]; }; + CUMP = derive2 { name="CUMP"; version="2.0"; sha256="0rdscywmi4sylpjpr8r472iapddizb1mqyrd532cvw6frxins7w0"; depends=[]; }; + CUSUMdesign = derive2 { name="CUSUMdesign"; version="1.1.3"; sha256="149d16d5y7zxkzq8gmb5spfrvirv0vyhk2qx0v7vclkr8adz9sva"; depends=[]; }; + CVD = derive2 { name="CVD"; version="1.0.2"; sha256="0agb0liwbp4wvmxbyxgfb7471ki1agfb6ssh77kvwbkxqmrc8d96"; depends=[]; }; CVST = derive2 { name="CVST"; version="0.2-1"; sha256="17xacyi8cf37rr2xswx96qy7pwkaqq394awdlswykz3qlyzx4zx2"; depends=[kernlab Matrix]; }; CVThresh = derive2 { name="CVThresh"; version="1.1.1"; sha256="19d7pslzj8r3z5gn3cplpz2h2ayz6k1nrfx3s2b7a8w1il3vmi69"; depends=[EbayesThresh wavethresh]; }; CVTuningCov = derive2 { name="CVTuningCov"; version="1.0"; sha256="1bwzis82lqwcqp2djy4bnd3vvjr47krlv3pdc5msh12wcs0xhs7n"; depends=[]; }; CVcalibration = derive2 { name="CVcalibration"; version="1.0-1"; sha256="0ca582fnysrldlzxc3pihsph9pvdgygdh7sfzgxvr5fc3z1jbjzb"; depends=[]; }; CaDENCE = derive2 { name="CaDENCE"; version="1.2.3"; sha256="1810a785czaxwfvhjnmhzqg743mgcgrdp3j1irlfl9pbli0ppidx"; depends=[pso]; }; Cairo = derive2 { name="Cairo"; version="1.5-9"; sha256="1x1q99r3r978rlkkm5gixkv03p0mcr6k7ydcqdmisrwnmrn7p1ia"; depends=[]; }; - Canopy = derive2 { name="Canopy"; version="1.0.0"; sha256="0bl9yjm8433nfx0k9vv2pyiv5zjnwsfi55q8pp10bv3b6v35g2vm"; depends=[ape fields]; }; - CarletonStats = derive2 { name="CarletonStats"; version="1.2"; sha256="07jjdhrz0chcgx0ivd5b6ig2936fq2hdhrflqmifm2mqbc7cgqbh"; depends=[]; }; + Calculator_LR_FNs = derive2 { name="Calculator.LR.FNs"; version="1.1"; sha256="1wgksvfkpbr7sicfnv9g5w04kbrb9pwl40aqbflzy9kmqbjy5hhx"; depends=[]; }; + CalibrateSSB = derive2 { name="CalibrateSSB"; version="1.0"; sha256="1r3318rzh29cgq72gdp16z60xkan7hyh1vj4gjg3pzbxy8zawqxx"; depends=[survey]; }; + CampaR1 = derive2 { name="CampaR1"; version="0.8.4"; sha256="0qlbrmqfs38bg9hsmvzd3cfgsbd2zx99f64bjv1gfhkmysmg1ysb"; depends=[bio3d ggplot2]; }; + Canopy = derive2 { name="Canopy"; version="1.1.1"; sha256="0hv7ar4kj3d7cfpj2j5wcdbzag7w7x0zifay5hdyr0j6v776zvh6"; depends=[ape fields]; }; + CarletonStats = derive2 { name="CarletonStats"; version="1.3"; sha256="1a8ic2ny2zkqy6xsnzhlc3hybhk200d8jbdbjfy7jav7n757kr0y"; depends=[]; }; CatDyn = derive2 { name="CatDyn"; version="1.1-0"; sha256="0bdixcf1iwbmjd2axi6csrzms25ghdj4r6223qhk2b54wlmbzaiz"; depends=[BB optimx]; }; + CatEncoders = derive2 { name="CatEncoders"; version="0.1.0"; sha256="1vg8a4v0fj8c4dwpynl8jf9d9lpjl08xpzkr4aa32gqkkk016mh3"; depends=[data_table Matrix]; }; CateSelection = derive2 { name="CateSelection"; version="1.0"; sha256="194lk6anrb05gaarwdg8lj5wm6k61b4r702cja3nf3z91i8paqi7"; depends=[]; }; CausalFX = derive2 { name="CausalFX"; version="1.0.1"; sha256="0v0diqq9fa1v9n3v5m5shvwlgmj91cbbb78243rwib1h3pyacihf"; depends=[igraph rcdd rje]; }; CausalGAM = derive2 { name="CausalGAM"; version="0.1-3"; sha256="0g68m2kxixwr7rx65r57m1n0qa161igc428zh9rj91fg6h4pdq4w"; depends=[gam]; }; Causata = derive2 { name="Causata"; version="4.2-0"; sha256="04lndjy4rdf063z75zv42b000z06ffnr91pv2sql1ks6w60zmh1m"; depends=[boot data_table foreach ggplot2 glmnet R_utils RCurl rjson RMySQL stringr XML yaml]; }; CePa = derive2 { name="CePa"; version="0.5"; sha256="1y2q72j8bqx509i62a2x9j40rj5bkpgx4z6fwj05ibazc1441asd"; depends=[igraph snow]; }; CellularAutomaton = derive2 { name="CellularAutomaton"; version="1.1-1"; sha256="0kmw2ic161xwalqa63hznic4n4hdz20hsilf2awlcldg7m9si1zd"; depends=[R_methodsS3 R_oo]; }; - CensMixReg = derive2 { name="CensMixReg"; version="0.7"; sha256="0ricfbm1k7dvsj658sj9ava8xgwqzypi99ihn41llnfdgdnslifs"; depends=[mixsmsn]; }; + CensMixReg = derive2 { name="CensMixReg"; version="1.0"; sha256="0plqirl6vhk2rx9q2kgniq7km9jl1g6xdn74sdjpdcm4srmr7074"; depends=[mixsmsn mnormt mvtnorm]; }; CensRegMod = derive2 { name="CensRegMod"; version="1.0"; sha256="0qqwkxn8knhcjb6mph7mp7mma56zxslbvkfgfajq2lq4gbg901y4"; depends=[]; }; + CensSpatial = derive2 { name="CensSpatial"; version="1.2"; sha256="07zi8mxzrqfdcyrrgch9yn0dpmvj5aj2d10q26cnykifsdbaq12c"; depends=[geoR lattice moments msm mvtnorm numDeriv optimx psych raster tmvtnorm]; }; CepLDA = derive2 { name="CepLDA"; version="1.0.0"; sha256="15vhk7l5mw2kicw2x60r4z71hc415g8kaf2p06jgf7ykxmzkj7kg"; depends=[astsa class MASS multitaper]; }; - CerioliOutlierDetection = derive2 { name="CerioliOutlierDetection"; version="1.0.8"; sha256="0n67y7ah496wck9hlrphya9k753gk44v7zgfz4s2a5ii49739zqi"; depends=[robustbase]; }; + CerioliOutlierDetection = derive2 { name="CerioliOutlierDetection"; version="1.1.5"; sha256="1q6dcikmk5la5msb4gml0llvbb9262bsgmdhxi75myv4jlb3b8p9"; depends=[robustbase]; }; CfEstimateQuantiles = derive2 { name="CfEstimateQuantiles"; version="1.0"; sha256="1qf85pnl81r0ym1mmsrhbshwi4h1iv19a2wjnghbylpjaslgxp6i"; depends=[]; }; - ChainLadder = derive2 { name="ChainLadder"; version="0.2.2"; sha256="1lxcy7q02lgsi575z1l1bxhxrgc3qcf2ln09pf4rb4diw7fs6ply"; depends=[actuar cplm ggplot2 lattice Matrix reshape2 statmod systemfit tweedie]; }; - ChannelAttribution = derive2 { name="ChannelAttribution"; version="1.5"; sha256="0hgvcvqgqn22n874y268rchy88jgyp4lv5nbdyzgyay2arwsjjdy"; depends=[Rcpp RcppArmadillo]; }; + ChIPtest = derive2 { name="ChIPtest"; version="1.0"; sha256="1yn5b5s56k2dbhw6damxj18xbaiz180ym7fiq2i3p2gkcgwpddbz"; depends=[]; }; + ChainLadder = derive2 { name="ChainLadder"; version="0.2.4"; sha256="0wp8cihvyrlbixzpp7fhr5qcsq46m54j0m4az97b0v6lwr5dfp4w"; depends=[actuar cplm ggplot2 lattice MASS Matrix reshape2 statmod systemfit tweedie]; }; + ChangepointTesting = derive2 { name="ChangepointTesting"; version="1.0"; sha256="1nb78b1jpp0wpy9ah2fxkh53hlmb2f82b68msbfhancb8zp2lclv"; depends=[]; }; + ChannelAttribution = derive2 { name="ChannelAttribution"; version="1.10"; sha256="1a1fzlp5fc5l357gklya096cwry26hymxrlpqsy1xdr60fd7pfx5"; depends=[Rcpp RcppArmadillo]; }; ChannelAttributionApp = derive2 { name="ChannelAttributionApp"; version="1.1"; sha256="0qy92ij1riynz7dhri3z85pafww5w9j1gx1bcgr8phlr32a7had7"; depends=[ChannelAttribution data_table ggplot2 shiny]; }; + Chaos01 = derive2 { name="Chaos01"; version="1.0.1"; sha256="061z1cm55d0vxf9ly8hdhqb0qapqkyvhnfg44nnfh43a6a6kv339"; depends=[]; }; ChaosGame = derive2 { name="ChaosGame"; version="0.2"; sha256="1d6c2zjh7d5d1abi07d9akjjbpccvlnra96f2w58rdr87dy757zq"; depends=[colorRamps ggplot2 gridExtra plot3D RColorBrewer rgl sphereplot]; }; ChargeTransport = derive2 { name="ChargeTransport"; version="1.0.2"; sha256="0mq06ckp3yyj5g1z2sla79fiqdk2nlbclm618frhqcgmq93h0vha"; depends=[]; }; CheckDigit = derive2 { name="CheckDigit"; version="0.1-1"; sha256="0091q9f77a0n701n668zaghi6b2k3n2jlb1y91nghijkv32a7d0j"; depends=[]; }; - ChemoSpec = derive2 { name="ChemoSpec"; version="4.2.8"; sha256="1ym2fy6dg2v9z6bld99snnydmmd03sr5m6clf9m2xwnkm252wcr4"; depends=[plyr rgl]; }; + ChemoSpec = derive2 { name="ChemoSpec"; version="4.4.17"; sha256="1v4mzkhr6y90nhxnq28aklh76f3imv1cxch50vj5k23d744djx8f"; depends=[plyr]; }; ChemometricsWithR = derive2 { name="ChemometricsWithR"; version="0.1.9"; sha256="095jahs7n591fam7s6i38h2iw5jbl005n040s1i489zzmsnj2n6d"; depends=[ChemometricsWithRData kohonen MASS pls]; }; ChemometricsWithRData = derive2 { name="ChemometricsWithRData"; version="0.1.3"; sha256="14l1y4md8hxq8gvip5vgg07vcr0d9yyhm5ckhzk8zwprdabn9a10"; depends=[]; }; + ChoR = derive2 { name="ChoR"; version="0.0-1"; sha256="1zxzgmww368zfdd3fq4wmj4v9prh8fqdb2d3wplqszxjf1irmb45"; depends=[rJava]; }; ChoiceModelR = derive2 { name="ChoiceModelR"; version="1.2"; sha256="0dkp3354gvrn44010s8fjbmkpgn1hpl4xbfs5xslql8sk8rw0n2c"; depends=[]; }; CircE = derive2 { name="CircE"; version="1.1"; sha256="14bja3zv9wg389m6khmsy3q12hhnfcp49rvrmw47y6fh5m7ihrz2"; depends=[]; }; - CircNNTSR = derive2 { name="CircNNTSR"; version="2.1"; sha256="1rl17kw6bl5xf7pgsc4im12i2kqz4a3b11vzzlb6wfl5yck6iff5"; depends=[]; }; + CircNNTSR = derive2 { name="CircNNTSR"; version="2.2"; sha256="0z29dsvcwpra1ny8kj486dpnrak272wmkfnaiyashzcqpnkmkg03"; depends=[]; }; CircOutlier = derive2 { name="CircOutlier"; version="3.2.3"; sha256="1vyac4mjkn6p4p9n5finqqak6g7m3hj04a66v3w797jn1wbd1xly"; depends=[CircStats circular]; }; CircStats = derive2 { name="CircStats"; version="0.2-4"; sha256="1f2pf1ppp843raa82s2qxm3xlcv6zpi578zc4pl0d7qyxqnh603s"; depends=[boot MASS]; }; + Cite = derive2 { name="Cite"; version="0.1.0"; sha256="1gfjirhswh4dkz88z4gl8m8jznqrvcgd4z3mnszyg1k5w3avlf1q"; depends=[miniUI RefManageR rstudioapi shiny]; }; CityPlot = derive2 { name="CityPlot"; version="2.0"; sha256="0lskgxmagqjglvpq39hgbygkf4qp28i2bj6b4m2av1s3pzb4465g"; depends=[]; }; - Ckmeans_1d_dp = derive2 { name="Ckmeans.1d.dp"; version="3.3.1"; sha256="0gzwcg6f3p1vr30lyniqiq4893kjxri4y2vjzh6qrldnay42kqf9"; depends=[]; }; + Ckmeans_1d_dp = derive2 { name="Ckmeans.1d.dp"; version="4.0.1"; sha256="148yfsz8di73iy81l2b97a7jcr3d3gs4a4jzjgybs7305ld1ngrq"; depends=[]; }; ClamR = derive2 { name="ClamR"; version="2.1-1"; sha256="0raz1n79g24a9mc93zj49r20xcmdziw6vvcw5sd3qyjp1ycia13c"; depends=[]; }; - ClickClust = derive2 { name="ClickClust"; version="1.1.4"; sha256="17r8jzhzwqa5h04bxdcyv31jhk6c709sx5m1z53jh3yf9zmkilvi"; depends=[]; }; - ClimClass = derive2 { name="ClimClass"; version="2.0.1"; sha256="13h6qj7wda5n1vgfqpclp0n3ir4qqqm7f00zlnq7dfpifd7ci4vn"; depends=[geosphere ggplot2 reshape2]; }; - CluMix = derive2 { name="CluMix"; version="0.3"; sha256="1yaznpv1aiqpg5ywqypharf8vigvgw0ihik7m8wfjbj2rzmlhj33"; depends=[ClustOfVar DescTools extracat FD gplots Hmisc marray Matrix]; }; + ClickClust = derive2 { name="ClickClust"; version="1.1.5"; sha256="0b46f453mffg4ym6yvmh7g3v05mc9gphwfra75j28y1425s87yvw"; depends=[]; }; + ClimClass = derive2 { name="ClimClass"; version="2.1.0"; sha256="1r836md31z2r5d9xckkbalzbhm4kf5paljv71kxpy53q92k7yi91"; depends=[geosphere ggplot2 reshape2]; }; + ClimDown = derive2 { name="ClimDown"; version="1.0.2"; sha256="0dbv5vn985bi9nqxhq7jcj6k38s8dlbqnln3adgd0ih2fwilvalg"; depends=[abind fields foreach ncdf4 PCICt seas udunits2]; }; + CluMix = derive2 { name="CluMix"; version="1.3.1"; sha256="0kq0max4v9860dv76lprzq5wzdcbvzzjzqnzxrskic5r3yk6jf28"; depends=[Biobase ClustOfVar DescTools extracat FD gplots Hmisc marray Matrix]; }; ClueR = derive2 { name="ClueR"; version="1.1"; sha256="1pk8l1qsiaypj34kbc3ikznn16ndn1alf1kgx0cx6pkhn2fpan2l"; depends=[e1071]; }; ClustGeo = derive2 { name="ClustGeo"; version="1.0"; sha256="0n7i6lwc86cizpn5ibd6k9i41w8fcbh1cdxqm7w52z024w0z40jh"; depends=[FactoMineR plyr rCarto]; }; - ClustMMDD = derive2 { name="ClustMMDD"; version="1.0.3"; sha256="1yvz5qpmagmld757nlc641imiv715mgwkni1d04zq99rf0bvxapf"; depends=[Rcpp]; }; + ClustMMDD = derive2 { name="ClustMMDD"; version="1.0.4"; sha256="0sblf3crpai53dflhyi27yn6mg0xyy9dxhwsk8j57sq5vr50x686"; depends=[Rcpp]; }; ClustOfVar = derive2 { name="ClustOfVar"; version="0.8"; sha256="17y8q2g4yjxs2jl1s8n5svxi021nlm0phs1g5hcnfxzpadq84wbs"; depends=[]; }; - ClustVarLV = derive2 { name="ClustVarLV"; version="1.4.1"; sha256="02a3ljds8hlkmpa0hw2mm51abimw23dnvr8c08bx2671284nwzmc"; depends=[Rcpp]; }; + ClustVarLV = derive2 { name="ClustVarLV"; version="1.5.1"; sha256="11zydj3iq15sg84kny6nklpmh8wj9j9nklkknzfqnaagai8jgsmy"; depends=[Rcpp]; }; + ClusterR = derive2 { name="ClusterR"; version="1.0.5"; sha256="1x4rkj4b8n8zirzzmkxa20n50msj6mw41j2gkr276pcs37paf772"; depends=[FD ggplot2 gmp gtools OpenImageR Rcpp RcppArmadillo]; }; + ClusterRankTest = derive2 { name="ClusterRankTest"; version="1.0"; sha256="01gzalhibqcdx3a6yc2cm1v77rscva73v5m5m0qkrgqdp9c8ph2a"; depends=[]; }; ClusterStability = derive2 { name="ClusterStability"; version="1.0.3"; sha256="1laa5m3y1rc7jr8q3i9qb3izs7qmadz169w9xm8q3mm3834ngn9b"; depends=[cluster clusterCrit copula Rcpp WeightedCluster]; }; + ClusteredMutations = derive2 { name="ClusteredMutations"; version="1.0.1"; sha256="1n31nnvpjh1faw751k8m3ga3wfl0yhdpnszwckqhfzlma1jr8z04"; depends=[seriation]; }; CoClust = derive2 { name="CoClust"; version="0.3-1"; sha256="00i0dghd35s91kkkxj1ywa5i93752mfa5527ifclw4xxxshppva8"; depends=[copula gtools]; }; - CoImp = derive2 { name="CoImp"; version="0.2-3"; sha256="04n0drx98hi8hmlb5xwl87ylv03j1ld04vp9d8s5sphvm9bbx690"; depends=[copula gtools locfit nnet]; }; + CoFRA = derive2 { name="CoFRA"; version="0.1001"; sha256="1nb6054mb8md3i0108n6jgwc9ydn9vn82q01jlnynfq2r3j06drw"; depends=[gplots Rcpp]; }; + CoImp = derive2 { name="CoImp"; version="0.3-1"; sha256="0zj152w4cvnbfl144ggs3ixmyywxf9dqhh04jfydmv2a8n6px89n"; depends=[copula gtools locfit nnet]; }; + CoSeg = derive2 { name="CoSeg"; version="0.38"; sha256="1fkaq5zwy8j17jvpv0kzmq40km83qn9s556661ghknzp7w8flih8"; depends=[fGarch kinship2]; }; CoinMinD = derive2 { name="CoinMinD"; version="1.1"; sha256="0invnbj5589wbs0k2w5aq9qak7axc3s0g9nw85c48lnl0v95s91i"; depends=[MCMCpack]; }; - CollocInfer = derive2 { name="CollocInfer"; version="1.0.2"; sha256="0bs4ivnk394l7xjxyvg7fhlfi3vdscp1c27dpvilrlmfikbzpc33"; depends=[deSolve fda MASS Matrix spam]; }; + CollapsABEL = derive2 { name="CollapsABEL"; version="0.10.11"; sha256="0libm1wv34av3vm2vvbqcnxjh4y1rwfi8qzjca8qdz9490vngags"; depends=[biganalytics bigmemory collUtils dplyr ggplot2 haplo_stats R_utils rJava RSQLite stringr]; }; + CollocInfer = derive2 { name="CollocInfer"; version="1.0.4"; sha256="1iwf5g2y7i0j8dc19hdhya4m6g47jj968glnclj7a2yaq2yx37cj"; depends=[deSolve fda MASS Matrix spam]; }; ColorPalette = derive2 { name="ColorPalette"; version="1.0-1"; sha256="1dsj5njikx3qm2lnamqqg4qgwwyr11fwx9s5sdi7dkfx3nmf6dac"; depends=[]; }; ComICS = derive2 { name="ComICS"; version="1.0.3"; sha256="1jfs0ygr88532jjw2ablyn2r3sg3hfsv5yrm4gkdgzakychj3dy2"; depends=[glmnet]; }; CombMSC = derive2 { name="CombMSC"; version="1.4.2"; sha256="1wkawxisn9alpwrymja8dla8n25z2fhai3l2xhin0b914y2kai09"; depends=[]; }; - CombinS = derive2 { name="CombinS"; version="1.1"; sha256="18wanir5vqk5i65hd6gr2za1xd26yfa0c3c029dbxsrsczwmb9xi"; depends=[]; }; + CombinS = derive2 { name="CombinS"; version="1.1-1"; sha256="06g41zbjl54cbhhs8q7l4bbvszclvbxn3m2dqg800d6ghs9vgl6v"; depends=[]; }; Combine = derive2 { name="Combine"; version="1.0"; sha256="0n3jkxf4s778d6fzcanb2b09xhpv5sqzawpg17bbfngfhp0vfyrq"; depends=[]; }; CombinePValue = derive2 { name="CombinePValue"; version="1.0"; sha256="0mlngyz2nq7s39javnnjbb5db93c5sg9daw2szng83mbyfza4hv2"; depends=[]; }; + CombinePortfolio = derive2 { name="CombinePortfolio"; version="0.3"; sha256="0w4mw748ix7jyqfirr8bm93i742y7bpir7q5x1j3r9cqpi9h5zfv"; depends=[]; }; + CommEcol = derive2 { name="CommEcol"; version="1.6.4"; sha256="02fmiil8sy5dwkpcdabcz5yhn7h9vlrsyyc9ilnmzb62z5447kdz"; depends=[ape gmp picante vegan]; }; CommT = derive2 { name="CommT"; version="0.1.1"; sha256="1kimm8z3k7p5lxsjnkb203js2rqn09grywxs890fab1hhgssgv2r"; depends=[ape ggplot2 gridExtra phangorn reshape]; }; CommonJavaJars = derive2 { name="CommonJavaJars"; version="1.0-5"; sha256="0kwf504g1izyy7hxss21dgz26w0spxibdlacrjdh7q10z799hfhh"; depends=[]; }; CommonTrend = derive2 { name="CommonTrend"; version="0.7-1"; sha256="088pg2hy2g2jgs84xawrnsf7gpvrpqjsimkx7g0i5r5fmkx169f9"; depends=[MASS urca]; }; CommunityCorrelogram = derive2 { name="CommunityCorrelogram"; version="1.0"; sha256="1wkrm5lil595sc4ih3qsf4sgvfipzlav0n7339ixqw9zxm2pg4nj"; depends=[vegan]; }; - Comp2ROC = derive2 { name="Comp2ROC"; version="1.1"; sha256="0vhpw6k9barcx5fl3kw3r7152mcrlpr127i5b70bx64g8g9ffs1v"; depends=[boot ROCR]; }; + Comp2ROC = derive2 { name="Comp2ROC"; version="1.1.4"; sha256="06hpbid9z1pzg7k4gqp2zn8l7sm375z32fsn54i27qbl3inp7m2d"; depends=[boot ROCR]; }; CompGLM = derive2 { name="CompGLM"; version="1.0"; sha256="04bjal92r0m7is5ygqpd0mdz3fb3pwcr7rc3mbxg9sg57nff3kf5"; depends=[Rcpp]; }; CompLognormal = derive2 { name="CompLognormal"; version="3.0"; sha256="1dhgr9l713l2n889bpa47lbg2qab0fz0r15qa928c0b9nz688ddm"; depends=[numDeriv]; }; - CompQuadForm = derive2 { name="CompQuadForm"; version="1.4.1"; sha256="1kv4bdkwidkjw0hgn2krv42p9v1a03p47g0p03lja3flhfbmiifj"; depends=[]; }; + CompQuadForm = derive2 { name="CompQuadForm"; version="1.4.2"; sha256="0bsgbdblxpv57mbwnf51xyiydp2bqyxkg4zzwqki85cv5xqlrq1n"; depends=[]; }; CompR = derive2 { name="CompR"; version="1.0"; sha256="1k4q0yanvhdh3ksia7d42lxky19yci5vxhmi6h716g9sxzfsjk6b"; depends=[MASS]; }; CompRandFld = derive2 { name="CompRandFld"; version="1.0.3-4"; sha256="1a3j5j50fz3f8vkvdmfccv5hn00spk08xanadqxpdy8pn925gqqb"; depends=[]; }; - CompareCausalNetworks = derive2 { name="CompareCausalNetworks"; version="0.1.4"; sha256="0x5flqwx49ar18hg2790rr28glypx8xyxp0ncjg4v5v18l82qd9s"; depends=[Matrix]; }; - CompareTests = derive2 { name="CompareTests"; version="1.1"; sha256="1assdqwr5qhwfqhc8gpfa53kcmd4dy5fb449pm4ng0n674qvra6c"; depends=[]; }; - Compind = derive2 { name="Compind"; version="1.1"; sha256="1435b8g6dzim7hff6kvxgx00linx5gk9y7zidbmishsybv5r1mar"; depends=[Benchmarking boot GPArotation Hmisc lpSolve MASS nonparaeff psych]; }; - ComplexAnalysis = derive2 { name="ComplexAnalysis"; version="1.0"; sha256="1yk0r3iwxirjsksnpwpnrgq4yhni6in9kgxxrs7v51l35zn78kji"; depends=[]; }; - Compositional = derive2 { name="Compositional"; version="1.1"; sha256="167823g2a3cnnkmvhdc5wnjic0ih1xz2xfymgh5dicfzr9inasb5"; depends=[BB doParallel foreach MASS mixture quantreg sn]; }; + CompareCausalNetworks = derive2 { name="CompareCausalNetworks"; version="0.1.5"; sha256="0z9fjd344wc5bisir7hf64abli7in8b5860y1012vmah4vz9knlr"; depends=[Matrix]; }; + CompareTests = derive2 { name="CompareTests"; version="1.2"; sha256="1z96kh851bpr2szgyjszkpv6m5ma6abz7hrm50fgvfpgxkj7f4yi"; depends=[]; }; + Compind = derive2 { name="Compind"; version="1.1.2"; sha256="14y18vvj13f3wi5gzrwabmj908hh1c2mizw98a36xxzlxw79fipd"; depends=[Benchmarking boot GPArotation Hmisc lpSolve MASS nonparaeff psych]; }; + Compositional = derive2 { name="Compositional"; version="2.2"; sha256="06s101fa8iv1sdg6x5yz3fl08mjjw265ff9kj9dxds02h036b84s"; depends=[doParallel emplik fields foreach MASS mixture Rfast sn]; }; Compounding = derive2 { name="Compounding"; version="1.0.2"; sha256="1xlb3ylwjv70850agir0mx79kcvs43h0n1sm22zcny3509s2r7lf"; depends=[hypergeo]; }; ConConPiWiFun = derive2 { name="ConConPiWiFun"; version="0.4.6"; sha256="1kkc4xp5b6q54b76wk4ga28wl668psbpyivl6bnh3xm21276yx5k"; depends=[Rcpp]; }; + ConR = derive2 { name="ConR"; version="1.1"; sha256="1jl6pp0g7qrp0h5771r03gjiy4g7xbqw12liiqd8cfyl045s07yr"; depends=[fields geosphere maptools raster rgdal rgeos sp spatstat]; }; ConSpline = derive2 { name="ConSpline"; version="1.1"; sha256="0ap3qxqdby9rf665vh40m6f4wjz7q3cz8i4abw1ccryjlwjv1kzp"; depends=[coneproj]; }; Conake = derive2 { name="Conake"; version="1.0"; sha256="1rj1rv8r53516jqhwp9xqqwjxh4gx1w47c0bw59f87wiy5pbchpf"; depends=[]; }; CondReg = derive2 { name="CondReg"; version="0.20"; sha256="1ffnrjfjcb66i9nyvidkcn4k9pcj4r7xanjwzcxcrj2qm39apkqx"; depends=[]; }; + Conigrave = derive2 { name="Conigrave"; version="0.1.0"; sha256="173panb3pz09fikzx3p0yjszizzi4sjl4pzrcw73ywvzkksg55kr"; depends=[ggplot2 miceadds mitools]; }; ConjointChecks = derive2 { name="ConjointChecks"; version="0.0.9"; sha256="097mhiz8zjmmkiiapr3zfx7v35xirg57nqp1swd72dixaa23nhr1"; depends=[]; }; - ConnMatTools = derive2 { name="ConnMatTools"; version="0.1.5"; sha256="02cv2rlfp9shwqc9nwb8278akmwv7yvviwl23jglzsyh721dpqkr"; depends=[]; }; + ConnMatTools = derive2 { name="ConnMatTools"; version="0.3.3"; sha256="0zsn3al3di0fd9hkqljpqqy4zbmh97xr6cdi4fzv80ax81fjfqyk"; depends=[]; }; ConsRank = derive2 { name="ConsRank"; version="1.0.2"; sha256="11pdccndmiz4vm15kaidzwy92vi2aqi5klwxag4p2xk1xivnlm0n"; depends=[gtools MASS proxy rgl]; }; - ContaminatedMixt = derive2 { name="ContaminatedMixt"; version="1.0"; sha256="13j4d5l0if9qrdqcx0mn529bygilym9gya3ih66p8bki6bmda72v"; depends=[mclust mixture mnormt]; }; + ContaminatedMixt = derive2 { name="ContaminatedMixt"; version="1.1"; sha256="04i8n8fmf2qs08dmlfls9j2509aqzb665qaz97na0wanbldxidbr"; depends=[caret mclust mixture mnormt mvtnorm]; }; ConvCalendar = derive2 { name="ConvCalendar"; version="1.2"; sha256="0yq9a42gw3pxxwvpbj6zz5a5zl7g5vkswq3mjjv5r28zwa3v05vc"; depends=[]; }; ConvergenceConcepts = derive2 { name="ConvergenceConcepts"; version="1.1"; sha256="0878fz33jxh5cf72lv0lga48wq2hqa4wz6m59111k59pzrsli344"; depends=[lattice tkrplot]; }; - Copula_Markov = derive2 { name="Copula.Markov"; version="1.0"; sha256="028rmpihyz9xr4r305lbcbb0y22jw1szmhw5iznv5zma507grbl3"; depends=[]; }; - CopulaDTA = derive2 { name="CopulaDTA"; version="0.0.2"; sha256="1k02r0i56fwwk155b7xy9dzxnmvnslzrcc90azixxhhc9rc1xsaq"; depends=[ggplot2 plyr reshape2 rstan]; }; - CopulaREMADA = derive2 { name="CopulaREMADA"; version="0.9"; sha256="0fhd4g8157rmkda5dygvnvb50f8dz31wlg1x432g9ra8fw7bdq01"; depends=[matlab statmod tensor]; }; + Copula_Markov = derive2 { name="Copula.Markov"; version="1.1"; sha256="0pgzrgd9bzf2qh9b7h0y4mmszlxk1wxdwlid3xh7rk7pif3mw3qd"; depends=[]; }; + CopulaDTA = derive2 { name="CopulaDTA"; version="0.0.4"; sha256="087kyq6bmnv12cg1il2hb9x1wbac5a85khf8mgvcvy4f1f8hhckr"; depends=[ggplot2 plyr reshape2 rstan]; }; + CopulaREMADA = derive2 { name="CopulaREMADA"; version="1.0"; sha256="021x40l5p6ip5br3qnca6nywkx9fpmgx5jm8i2dngj6yz6rc3hag"; depends=[matlab statmod tensor]; }; CopulaRegression = derive2 { name="CopulaRegression"; version="0.1-5"; sha256="0dd1n7b23yww36718khi6a5kgy8qjpkrh0k433c265653mf1siq8"; depends=[MASS VineCopula]; }; - CopyDetect = derive2 { name="CopyDetect"; version="1.1"; sha256="0h9bf7ay5yr6dwk7q28b6xxfzy6smljkq6qwjkzfscy5hnmwxkpa"; depends=[irtoys]; }; + CopyDetect = derive2 { name="CopyDetect"; version="1.2"; sha256="1sahrlg1gk1q8ciq0a8hxrlyci5i8jxz8pjpy04alckxdrxfpqbi"; depends=[irtoys]; }; CopyNumber450kCancer = derive2 { name="CopyNumber450kCancer"; version="1.0.4"; sha256="0csmrv5n4lxd19q8q94sxs374lkqilp5x2dj8nxzs0x1v8hn0knm"; depends=[]; }; - CorReg = derive2 { name="CorReg"; version="1.1.1"; sha256="1g12yrwx5j3db1j9q0j24z3q2j8a7m7ddkj9a4yznzzvjjdz2k0n"; depends=[corrplot elasticnet glmnet lars MASS Matrix mclust mvtnorm Rcpp RcppEigen Rmixmod rpart]; }; + CorReg = derive2 { name="CorReg"; version="1.1.9"; sha256="0x5bcqyi03pxsajjbsq3hwp1d4f1b8150n1z0wsdnv1jyg1rc9d7"; depends=[corrplot elasticnet glmnet lars MASS Matrix mclust mvtnorm Rcpp RcppEigen Rmixmod rpart]; }; + Corbi = derive2 { name="Corbi"; version="0.4-1"; sha256="01xspwzgic7yfmnp6l8w33mjnyr8lvajzp6wvwpgq3ffhli5hrf0"; depends=[CRF Matrix mpmi]; }; CorrBin = derive2 { name="CorrBin"; version="1.5"; sha256="1kg8kms76z127j2vmf7v162n0sh2jqylw4i7c35x5sig4q22m9gy"; depends=[boot combinat dirmult geepack mvtnorm]; }; - CorrMixed = derive2 { name="CorrMixed"; version="0.1-12"; sha256="10wcg2rn4dcx87wv6h51rk31gdh7pc0bbgmdi1qvwd08nlqc3zsy"; depends=[nlme psych]; }; + CorrMixed = derive2 { name="CorrMixed"; version="0.1-13"; sha256="02zg5kmv5qxnasnz872r3z7x7dmdcniq1x5xyfnnb3niwkdjgxzx"; depends=[nlme psych]; }; + CorrToolBox = derive2 { name="CorrToolBox"; version="1.3"; sha256="0q6w3avlpdr35aigc2a03wzi36z5k3c7hacbarjpfv9lig3c35wc"; depends=[BinNonNor BinOrdNonNor GenOrd moments mvtnorm psych]; }; + CorrectOverloadedPeaks = derive2 { name="CorrectOverloadedPeaks"; version="1.2.14"; sha256="1if4qb1d6mg3435pk3znln8id8fj12n3j9sjv4zn104v2fr90mhr"; depends=[caTools digest xcms XML]; }; Correlplot = derive2 { name="Correlplot"; version="1.0-2"; sha256="0prxnbi7ga5d23i0i4qpynfb3zrsgjxam47km6nsj1prakdkrq7w"; depends=[calibrate xtable]; }; + CosW = derive2 { name="CosW"; version="0.1"; sha256="12l4w8b5jnr8773hxk7khrdn705x6bdbw7s8z8w95bfbbi12dj6v"; depends=[fdrtool pracma]; }; CosmoPhotoz = derive2 { name="CosmoPhotoz"; version="0.1"; sha256="04girid6wvgyrk8ha81mdqjx2mmzifz57l1hzcgrdnzmjmm3vlmp"; depends=[arm COUNT ggplot2 ggthemes gridExtra mvtnorm pcaPP shiny]; }; + Counterfactual = derive2 { name="Counterfactual"; version="1.0"; sha256="18ngh1p2lm16wb4sxpah0xfbsnpq0i03mkaxsia51lqwkfg57vdv"; depends=[doParallel doRNG foreach Hmisc quantreg survival]; }; + Countr = derive2 { name="Countr"; version="3.2.8"; sha256="0nx0xavpm3kkh6q9q4snqjs3dmp45b9dm2zqwg7lkrv0f32inkyp"; depends=[boot car flexsurv Formula MASS Matrix numDeriv optimx Rcpp RcppArmadillo VGAM]; }; CountsEPPM = derive2 { name="CountsEPPM"; version="2.1"; sha256="1w1l4kbk8c2prq7f38maz0fc44j9za6cmj0vydmcgscb9s6f3mg7"; depends=[expm Formula numDeriv]; }; CovSel = derive2 { name="CovSel"; version="1.2.1"; sha256="02fsiykbg96ynqw25vfyrams7fs39xjmfhvb23zjbqb7ql6d0xdk"; depends=[dr MASS np]; }; + CovSelHigh = derive2 { name="CovSelHigh"; version="1.0.0"; sha256="186ji8qvjvm41i85qa2324rs59wvjb4gsjllza5d7db08gqia66z"; depends=[bindata bnlearn doParallel doRNG foreach glmnet MASS Matching randomForest xtable]; }; CoxBoost = derive2 { name="CoxBoost"; version="1.4"; sha256="1bxkanc8zr4g3abn4ds5wqibv65flvm4y648fs9s0l4vc9vmyshg"; depends=[Matrix prodlim survival]; }; CoxPlus = derive2 { name="CoxPlus"; version="1.1.1"; sha256="038wsz206bgc0pnzx403b5ihcwhxpkrpxmwvrvqcxf8333pb62l5"; depends=[Rcpp RcppArmadillo]; }; CoxRidge = derive2 { name="CoxRidge"; version="0.9.2"; sha256="0p65mg4hzdgks03k1lj90yj6qbk50s94rwvcwzkb5xxxwrijd10r"; depends=[survival]; }; Coxnet = derive2 { name="Coxnet"; version="0.2"; sha256="023l1fcs0g5qqlslqfwb51nkmcqa0d5qp9bibhndd8gq7raz6ws6"; depends=[Matrix Rcpp RcppEigen]; }; CpGFilter = derive2 { name="CpGFilter"; version="1.0"; sha256="07426xlmx0ya3pi1y5c24zr58wr024m38y036h9gz26pw7bpawy2"; depends=[]; }; CpGassoc = derive2 { name="CpGassoc"; version="2.55"; sha256="0vnksx66z8rfm5s5hn49p9ps26jwn6w2216bqw2k9xv77rr68phn"; depends=[nlme]; }; - Cprob = derive2 { name="Cprob"; version="1.2.4"; sha256="0zird0l0kx2amrp4qjvlagw55pk9jrx0536gq7bvajj8avyvyykr"; depends=[geepack lattice lgtdl prodlim tpr]; }; + Cprob = derive2 { name="Cprob"; version="1.3"; sha256="1hahvkmniahhar47nha96vcj810895wgvvg9si112hnv3sjaql3r"; depends=[geepack lattice lgtdl prodlim tpr]; }; CreditMetrics = derive2 { name="CreditMetrics"; version="0.0-2"; sha256="16g3xw8r6axqwqv2f0bbqmwicgyx7nwzff59dz967iqna1wh3spi"; depends=[]; }; - Crossover = derive2 { name="Crossover"; version="0.1-15"; sha256="1g9z4ssqyb3silaprcsjsdd1bk5rsih2hvqr6rm1qb8ayqjr1sp3"; depends=[CommonJavaJars crossdes digest ggplot2 JavaGD MASS Matrix multcomp Rcpp RcppArmadillo rJava xtable]; }; + CrossClustering = derive2 { name="CrossClustering"; version="3.0"; sha256="0l9cdniqf63x4pfkf6y7c2qh056jwadqw45nz9jk78wamqq8hyqv"; depends=[cluster]; }; + CrossVA = derive2 { name="CrossVA"; version="0.9.0"; sha256="0q5fc2maxq70s6h6dmj6amn6xzrjn6rzcsnq0cqrah2c8b6y351y"; depends=[lubridate]; }; + Crossover = derive2 { name="Crossover"; version="0.1-16"; sha256="19697wy066apkxrm99s7vflc0ih6zxxmyvj7x3dzh2icnv1gg1bb"; depends=[CommonJavaJars crossdes digest ggplot2 JavaGD MASS Matrix multcomp Rcpp RcppArmadillo rJava xtable]; }; CryptRndTest = derive2 { name="CryptRndTest"; version="1.2.2"; sha256="1cg0agwqp1f7pgxdf9wilwparklyfsv900r47fpihnqw3ycvbdai"; depends=[gmp kSamples LambertW MissMech Rmpfr sfsmisc tseries]; }; CrypticIBDcheck = derive2 { name="CrypticIBDcheck"; version="0.3-1"; sha256="1lrpwgvsif1wnp19agh8fs3nhlb7prr3hhqg28fi4ikdd1l2j3r4"; depends=[car chopsticks ellipse rJPSGCS]; }; - Cubist = derive2 { name="Cubist"; version="0.0.18"; sha256="176k9l7vrxamahvw346aysj19j7il9a2v6ka6dzmk0qq7hf3w9ka"; depends=[lattice reshape2]; }; + CuCubes = derive2 { name="CuCubes"; version="0.1.0"; sha256="1cpazar85rp8xfjvy0vxivr61grzvxz7a9mirxvhynln964by6ns"; depends=[]; }; + Cubist = derive2 { name="Cubist"; version="0.0.19"; sha256="1bjajcr2qnmqy8cakgiy4q07nj9dygz15a9jry5sa4nbkabpj4qh"; depends=[lattice reshape2]; }; + Cyclops = derive2 { name="Cyclops"; version="1.2.2"; sha256="1ly8rmfssjbi04b0k200iqh0gv3zr53x9vhj6hnrg1n3dqw0smn5"; depends=[BH bit ff ffbase Matrix Rcpp RcppEigen RcppParallel]; }; + CytobankAPI = derive2 { name="CytobankAPI"; version="1.0.0"; sha256="1hkd9chpn78hwjbyv1c9pa03fh3p3bj2axilibz8pyxd2vfqdk3y"; depends=[httr jsonlite]; }; D2C = derive2 { name="D2C"; version="1.2.1"; sha256="0qhq27978id0plyz9mgdi0r1sr3ixnvqm8w6hp5c2wjd1yhhh12s"; depends=[corpcor foreach gRbase lazy MASS randomForest RBGL Rgraphviz]; }; - D3M = derive2 { name="D3M"; version="0.41"; sha256="12yny4a6rggaz5zfjpacsmxcj805nbkw19n26m9vr58a7zg1iwa1"; depends=[beanplot Rcpp]; }; + D3M = derive2 { name="D3M"; version="0.41.1"; sha256="1qr50xq5zccb16a1rgzfbb9bz8bbnxxb522nb8ga159nmb4cwjmp"; depends=[beanplot Rcpp]; }; + D3partitionR = derive2 { name="D3partitionR"; version="0.3.1"; sha256="09172g1xz9j746y22wj7vx759a3wnv6skqqzfazl753ms07zrwdc"; depends=[htmlwidgets]; }; DAAG = derive2 { name="DAAG"; version="1.22"; sha256="16xp4qk09v9jwm4cs7b4mpn0kgl1va9rw86viwcjc54vjc32953f"; depends=[lattice latticeExtra]; }; - DAAGbio = derive2 { name="DAAGbio"; version="0.62"; sha256="18m4vq8vv0yi79na62nrm0cy1nlk7bg0xbddzxv5gpkmzi1i6m9s"; depends=[limma]; }; + DAAGbio = derive2 { name="DAAGbio"; version="0.63-1"; sha256="0f904cpyq140fbsxfqrm3wg41bncf6h2rkxfd37ij5m0qp067f0w"; depends=[limma]; }; DAAGxtras = derive2 { name="DAAGxtras"; version="0.8-4"; sha256="18lg13mbyharidj5j7ncx8s7d72v2hcnqr00vilhf3djk2mjq7xn"; depends=[]; }; DAGGER = derive2 { name="DAGGER"; version="1.4"; sha256="0b2hzv001xhch7pqgb53lfpdcjwg5lj33i6pb884l1kx92svjfr7"; depends=[Matrix quadprog Rglpk]; }; - DAISIE = derive2 { name="DAISIE"; version="1.0.2"; sha256="1w5pdsfcalr86k1gj6qz9qdgx82n5lxcjdzvyf854prxaq5a5z0m"; depends=[deSolve]; }; - DAKS = derive2 { name="DAKS"; version="2.1-2"; sha256="1817s7xd4h2zzaagmnw423qaxpa5fmxi3fh4h9hm2ra9w7nh6ljj"; depends=[relations sets]; }; - DALY = derive2 { name="DALY"; version="1.4.0"; sha256="1gx4q24149q1ipsrinswrm37z1nf4swgq188zsc1xifmw9l28v11"; depends=[]; }; + DAISIE = derive2 { name="DAISIE"; version="1.2"; sha256="0570q8bs2464516ink56a1ir4p5chdwnj1vygywn9lgc7n4dricd"; depends=[DDD deSolve subplex]; }; + DAKS = derive2 { name="DAKS"; version="2.1-3"; sha256="0vmpwxvksnmyq40faimbgpj0y3zbk519986n38ipwdfzllcg0zs4"; depends=[relations sets]; }; + DALY = derive2 { name="DALY"; version="1.5.0"; sha256="1v7ld01xcn5jiygl1c3xhd5h71ip90lks87fs9gmpnivp8jz5cr5"; depends=[]; }; DAMOCLES = derive2 { name="DAMOCLES"; version="1.1"; sha256="07z8mynhqnk1zcvm84w09xzkiy2dfxwhmnpi6gaddr3p0waql4gj"; depends=[ape caper deSolve expm geiger matrixStats picante]; }; - DAMisc = derive2 { name="DAMisc"; version="1.3"; sha256="0d6fkg0c5a2jx1khv013lmahx5clyzab9w2dsi5zwxnf0jz5m8fc"; depends=[car effects gdata lattice MASS nnet pscl sm xtable]; }; + DAMisc = derive2 { name="DAMisc"; version="1.4-3"; sha256="1hic53vi7mj4fvggxjl4d3j4zw8wwczh6pldyi8idrhm45hw2nh4"; depends=[boot car effects gdata lattice MASS nnet pscl QRM sm VGAM xtable]; }; DATforDCEMRI = derive2 { name="DATforDCEMRI"; version="0.55"; sha256="0v26a1gi8l21ga5nqcnyfaa7gc8zxq6wk95b96ajgpdybb0l9s53"; depends=[akima lattice locfit matlab R_methodsS3 R_oo xtable]; }; + DBEST = derive2 { name="DBEST"; version="1.4"; sha256="1p25ddnn1r7lcqm077kxq0l5kv5104gnj0q9xf3yjyzgm4vsrfrn"; depends=[zoo]; }; DBGSA = derive2 { name="DBGSA"; version="1.2"; sha256="04zqh9y3nqcdzs5jn8aaq5idy9zl450ikvl788xs860wlg692qv2"; depends=[fdrtool]; }; - DBI = derive2 { name="DBI"; version="0.3.1"; sha256="0xj5baxwnhl23rd5nskhjvranrwrc68f3xlyrklglipi41bm69hw"; depends=[]; }; + DBI = derive2 { name="DBI"; version="0.5-1"; sha256="1idwm9lkmz6ns6h0vvgml18mg0k7vjqiv9p5svrdcmx7r1rirpdi"; depends=[]; }; + DBItest = derive2 { name="DBItest"; version="1.4"; sha256="04d1q04lmmxnaapdalj61k2k4p06vpff0fzr91fa5a2mvaxl6272"; depends=[DBI R6 testthat withr]; }; DBKGrad = derive2 { name="DBKGrad"; version="1.6"; sha256="0207zx0v1x3zhfbs0h1ssxc1b683k111f90k8ybhknb147104knr"; depends=[lattice minpack_lm SDD TSA]; }; + DCG = derive2 { name="DCG"; version="0.9.2"; sha256="1s2dz0vnhdhq23fqds1m2jspaz8k5zvd76z1zlbi6nb5ja5n3j3w"; depends=[]; }; DCGL = derive2 { name="DCGL"; version="2.1.2"; sha256="1dhkdvdglpsr0fzrfrrr6q76jhwxgrcjsiqn56s082y7v366xvs4"; depends=[igraph limma]; }; DCL = derive2 { name="DCL"; version="0.1.0"; sha256="1ls3x3v0wmddfy7ii7509cglb28l1ix1zaicdc6mhwin0rpp2rx3"; depends=[lattice latticeExtra]; }; + DCM = derive2 { name="DCM"; version="0.1.1"; sha256="191gwfv30hdr789jmdrimcc7aqisz635anydsw2v4s28a3zjbipw"; depends=[gWidgets pander readxl]; }; DCODE = derive2 { name="DCODE"; version="1.0"; sha256="19dwms88q0ylxd92l3ivig8p8jjyhk8mhgz0l36m9pcq11gyjc0n"; depends=[seqinr]; }; - DCchoice = derive2 { name="DCchoice"; version="0.0.14"; sha256="0w2s4wqla39g8dbvnq01lmxl2zfg4znl37z8if6y00clynlnphxs"; depends=[Formula interval MASS]; }; + DCchoice = derive2 { name="DCchoice"; version="0.0.15"; sha256="1qdqn45ipq0806r25ri4aygzq48k8j5k8rlhi1cafym421yq6bfg"; depends=[Formula interval MASS]; }; DCluster = derive2 { name="DCluster"; version="0.2-7"; sha256="008nyry64s5g80narcc58273v0jhqzfgwynka6mh7jgi7qsqnxjd"; depends=[boot MASS spdep]; }; - DDD = derive2 { name="DDD"; version="3.2"; sha256="1d1va8qpzii5538zg9j5kf7i3hh90a2gdndhj35qvdgldwqj4rhh"; depends=[ade4 ape deSolve expoRkit Matrix phytools SparseM subplex]; }; - DDHFm = derive2 { name="DDHFm"; version="1.1.1"; sha256="03zs2zbrhjcb321baghva7b8y61c8p9z6bfj2vg9cvadpb0260nk"; depends=[]; }; + DClusterm = derive2 { name="DClusterm"; version="0.1"; sha256="0xkl4677vqy4sdkm0fczscqszjxk1kfmlbzdgm88shcnjzjg71d8"; depends=[DCluster gridExtra latticeExtra lme4 pscl RColorBrewer sp spacetime xts]; }; + DDD = derive2 { name="DDD"; version="3.3"; sha256="1rjk35gz8zq0xprzag9nzfs569pm7nhl7bfrvcnapigd2h7gw612"; depends=[ade4 ape deSolve expoRkit Matrix phytools SparseM subplex]; }; + DDHFm = derive2 { name="DDHFm"; version="1.1.2"; sha256="0lgh6kcfas06p2yy7zy21r05k5521xbj5af3wwwssp5li1cia35g"; depends=[lokern wavethresh]; }; DDIwR = derive2 { name="DDIwR"; version="0.2-0"; sha256="0dqbldl5c6b8i5q3yk0hwd12lp8z9j4ilnmsqrkj69fv7mys9q3k"; depends=[foreign XML]; }; - DDRTree = derive2 { name="DDRTree"; version="0.1.3"; sha256="08h89pm1n8c8yvkm5qx2aqhz3c3x1ljy551gsq5waxjvmq06k8fy"; depends=[BH irlba Rcpp RcppEigen]; }; + DDRTree = derive2 { name="DDRTree"; version="0.1.4"; sha256="02z4j777yxqp09gxwzmn6x5fjz4rbsp1lh4qj20vgdjp8wcn3pn0"; depends=[BH irlba Rcpp RcppEigen]; }; DECIDE = derive2 { name="DECIDE"; version="1.2"; sha256="18kn2pm9r0ims2k1jfsfzh258wwxz0xg86rsbwgq6szh0azlq3qy"; depends=[]; }; DEEPR = derive2 { name="DEEPR"; version="0.1"; sha256="0q8970q3gpjxwxdf2bkhpnqrxpm00w27b20a9sn9vv314rn1n7s8"; depends=[dirmult]; }; DEMEtics = derive2 { name="DEMEtics"; version="0.8-7"; sha256="1s59qim60d4gp5rxjacdbmxdbpdm7cy9samn088w8fs0q232vjjx"; depends=[]; }; DEMOVA = derive2 { name="DEMOVA"; version="1.0"; sha256="09dqhhhihphhdnplmhdq4q5zwc0qvqhirdrxa9x6fr43vwa5zfp4"; depends=[leaps]; }; - DESP = derive2 { name="DESP"; version="0.1-6"; sha256="0gzhzchliwsjynsj9jrwrxdg5is3ph0inibfips7526ry1bfj93x"; depends=[graph MASS Matrix RBGL SparseM]; }; + DESP = derive2 { name="DESP"; version="0.2-2"; sha256="1s5x6x36ra83izcyrgdzc26a02cbbgy3xxn32sl30z6srys1j3j3"; depends=[graph MASS Matrix RBGL SparseM]; }; DESnowball = derive2 { name="DESnowball"; version="1.0"; sha256="012kdnxmzap6afc3ffkcvk1mazlkp286av6g9fwz2wcbf5mh9n1m"; depends=[clue cluster combinat MASS]; }; - DEoptim = derive2 { name="DEoptim"; version="2.2-3"; sha256="0pcs7kkhad139c3nhmg7bkac1av4siknfg59lpknwwrsxbz208dg"; depends=[]; }; - DEoptimR = derive2 { name="DEoptimR"; version="1.0-4"; sha256="1cmyni2a4hfgfx0jfdxrkjlmhqb8rksk0vwnxsaz13k95pc473cv"; depends=[]; }; - DFIT = derive2 { name="DFIT"; version="1.0-2"; sha256="1kn3av6pnkmf9703yp3cn0zbdzjzxrlm6nbbcg7lwv9550jw2c4n"; depends=[ggplot2 mvtnorm simex]; }; - DIFboost = derive2 { name="DIFboost"; version="0.1"; sha256="1wms7k1h09an46zi0sx2qi83zhzhqc864abnxn5iybv5g72xj89k"; depends=[mboost penalized stabs]; }; - DIFlasso = derive2 { name="DIFlasso"; version="1.0-1"; sha256="048d5x9nzksphsdk9lwfagl165bb40r0pvjq2ihvhqvxspgpar4b"; depends=[grplasso miscTools penalized]; }; - DIFtree = derive2 { name="DIFtree"; version="2.0.1"; sha256="0mm9v1sg6n0mdrplnpxflhzg5diksdns3wd8h24drzb8ww9mvfri"; depends=[penalized plotrix]; }; + DEoptim = derive2 { name="DEoptim"; version="2.2-4"; sha256="10nlsvms5pf0wmn4z1lj6vnmpwr10q8nhdy5xy9rn7hd1627fm0a"; depends=[]; }; + DEoptimR = derive2 { name="DEoptimR"; version="1.0-8"; sha256="1vz546hyjyhly70z62h5n3mn62b8llhhmim8ffp9y6jnnb0i2sc4"; depends=[]; }; + DEploid = derive2 { name="DEploid"; version="0.3.2"; sha256="12yh9w6qlg3l9w9i7isic1g825d9r7qwwwf3d0x8j7prim37w5yr"; depends=[Rcpp]; }; + DFIT = derive2 { name="DFIT"; version="1.0-3"; sha256="1h0wvcplb7j7dqz9hkaw30x92ngxzkdvkwpg0142hrqb201zfrac"; depends=[ggplot2 mvtnorm simex]; }; + DGCA = derive2 { name="DGCA"; version="1.0.1"; sha256="1lqqzrsidkli4bk4jikq5f75jzqyzhv94n882yic5ndxgv26p9ic"; depends=[matrixStats WGCNA]; }; + DHARMa = derive2 { name="DHARMa"; version="0.1.3"; sha256="0kq8q13f3jdjczsc3vq8x6i85qydqk5jmm0yl8m6x6w2nva5glvg"; depends=[ape doParallel foreach gap lme4 lmtest MASS mgcv qrnn sfsmisc]; }; + DIFboost = derive2 { name="DIFboost"; version="0.2"; sha256="0wyjk870n18lq0dwhm9ndsh5vv0d8wkrbcky68w454vzrrw1q9h8"; depends=[mboost penalized stabs]; }; + DIFlasso = derive2 { name="DIFlasso"; version="1.0-2"; sha256="1900il14l2wvy5cjvmvg8z11q7ii311s18yif35561jilp2k9zfx"; depends=[grplasso miscTools penalized]; }; + DIFtree = derive2 { name="DIFtree"; version="2.1.4"; sha256="16cyd634jflaszpfq0ymwlbv57ci1iyffwai641jczn8cny504zl"; depends=[penalized plotrix]; }; DIME = derive2 { name="DIME"; version="1.2"; sha256="11l6mk6i3kqphrnq4iwk4b0ridbbpg2pr4pyqaqbsb06ng899xw0"; depends=[]; }; - DIRECT = derive2 { name="DIRECT"; version="1.0"; sha256="129bx45zmd6h7j6ilbzj2hjg4bcdc08dvm2igggi8ajndl1l5q9j"; depends=[]; }; - DJL = derive2 { name="DJL"; version="2.0"; sha256="06m7r6qvphzjkpp83ync3666p7rac5p81c3hqk5mhr9iykfzrh0f"; depends=[car combinat lpSolveAPI]; }; - DLMtool = derive2 { name="DLMtool"; version="3.1"; sha256="1ir04s2npgdy30550gbfccjv5jzsh54qm5g4pw97y24i6qag1qcq"; depends=[boot MASS snowfall]; }; + DIRECT = derive2 { name="DIRECT"; version="1.0.1"; sha256="00z4xlc9kxn19lw2b8xq6krsf5v3wfbr1ghl5ah5shr9dnv84lc1"; depends=[]; }; + DISTRIB = derive2 { name="DISTRIB"; version="1.0"; sha256="0whwmmdx2k2vrjjkz4ww9v7z9ad3835819pby91119lyic27w727"; depends=[]; }; + DJL = derive2 { name="DJL"; version="2.6"; sha256="1vvfh9hpanac2g22k4hqy3y7j3mn34mvasw0rx3y4vjbv3h05yw6"; depends=[car lpSolveAPI]; }; + DLASSO = derive2 { name="DLASSO"; version="1.0.0"; sha256="1rnm9f31d021yk2rhk7zcp2l9zbyxhpvdx32q6jjjjsiignjzc60"; depends=[MASS]; }; + DLMtool = derive2 { name="DLMtool"; version="3.2.2"; sha256="13qpv6k3dn793kykxi9bmj2bl893lql7zsyfp6s3r7wp29k3kjj1"; depends=[abind boot MASS Rcpp readxl snowfall]; }; DMR = derive2 { name="DMR"; version="2.0"; sha256="1kal3bvhwqs00b6p6kl0ja35pcz9v9y569148qfhy94m319fcpzm"; depends=[magic]; }; + DMRMark = derive2 { name="DMRMark"; version="1.0"; sha256="09bw1iyyc4hqy6cjbci736zh0qzdfzk1s90in93f7s967d73mj8w"; depends=[ellipse MCMCpack mvtnorm]; }; DMwR = derive2 { name="DMwR"; version="0.4.1"; sha256="1qrykl9zdvgm4c801iix5rxmhk9vbwnrq9cnc58ms5jf34hnmbcf"; depends=[abind class lattice quantmod ROCR rpart xts zoo]; }; + DMwR2 = derive2 { name="DMwR2"; version="0.0.2"; sha256="1vzfbz2k05j8r2hpig3d2grb99rnnh2s1sviii3prcyqicxfh0i9"; depends=[class DBI dplyr quantmod readr rpart xts zoo]; }; DNAprofiles = derive2 { name="DNAprofiles"; version="0.3.1"; sha256="0chsndrmanb2swmhfan9iz1bzz3jsvk24n7j9fnjxibckmn2fdpv"; depends=[bit Rcpp RcppProgress]; }; - DNAtools = derive2 { name="DNAtools"; version="0.1-21"; sha256="1ncx2rmxb0ip804x6xznfv8brjpp518fhnm1653mlrsl3hpzrh88"; depends=[multicool Rcpp Rsolnp]; }; + DNAseqtest = derive2 { name="DNAseqtest"; version="1.0"; sha256="1mpmf40vrpw8m75rlqchsnyrz12pgg5bkz7wfca5yy5sbbiwk5pf"; depends=[]; }; + DNAtools = derive2 { name="DNAtools"; version="0.1-22"; sha256="1kkqbzwbivd78lpphsn9xqdxqc46ng6f86nqns18gq0s2g8gvys1"; depends=[multicool Rcpp Rsolnp]; }; + DNLC = derive2 { name="DNLC"; version="1.0.0"; sha256="05410xgpfjsydjmnzry454qcjpws9vhh252q2xq7l0scdj87ly00"; depends=[caTools fdrtool GOstats igraph locfdr mvtnorm spdep]; }; DNMF = derive2 { name="DNMF"; version="1.3"; sha256="09yp6x6vd44ahklcag96fpjgyphyn45rkqkbwr1n36a2d8vxk9nc"; depends=[doParallel foreach gplots Matrix]; }; - DOBAD = derive2 { name="DOBAD"; version="1.0.4"; sha256="1hslwgs4q05xm29my5cq6g3vvjc0arvdmlx734wardj9dy29p1v5"; depends=[lattice numDeriv]; }; + DOBAD = derive2 { name="DOBAD"; version="1.0.5"; sha256="0nvjs4vsbl1db4g0yyrqyllawhvrzv1lgs6gmn49iqvajxyrpnvi"; depends=[lattice numDeriv]; }; + DODR = derive2 { name="DODR"; version="0.99.2"; sha256="16ia9j8vab8n2i6a17wz8nfvkfgj2gsyhxvwgxvjg2cz99hsbhdj"; depends=[Matrix npsm Rfit]; }; + DOT = derive2 { name="DOT"; version="0.1"; sha256="0qh5n57cp9c2n5yn59q4wggz82943pwfanp3kx869aba2x3sj30i"; depends=[V8]; }; DOvalidation = derive2 { name="DOvalidation"; version="0.1.0"; sha256="0vm4sxbchkj2hk91xnzj6lpj05jg2zcinlbcamy0x1lrbjffn9zk"; depends=[]; }; + DPBBM = derive2 { name="DPBBM"; version="0.2.5"; sha256="1qypxrcm3sb727lqb09ssjf3hblixqayw3qsyql01imrxwm609i2"; depends=[CEoptim gplots tmvtnorm VGAM]; }; DPpackage = derive2 { name="DPpackage"; version="1.1-6"; sha256="01qdl6cp6wkddl9fwwpxwvyhb7lpjxis6wnbm2s288y2n9wi4j24"; depends=[MASS nlme survival]; }; + DREGAR = derive2 { name="DREGAR"; version="0.1.0.0"; sha256="07n5iq0yv9f09wibbkamyz2x1b6sp4v0mzasfmllzlzqsr6s50gz"; depends=[msgps]; }; DRIP = derive2 { name="DRIP"; version="1.1"; sha256="050xfq30fp9m03ig938bci2haiglj6jj4k327fpz7r2y78cgcnn4"; depends=[caTools readbitmap]; }; + DRR = derive2 { name="DRR"; version="0.0.2"; sha256="1scfwp6ry6apxzqjclsmn2frxp9qfw6zxsxn5w0j0q3sz42hz1h2"; depends=[CVST kernlab Matrix]; }; DRaWR = derive2 { name="DRaWR"; version="1.0.1"; sha256="1pfdczwzd236c64yw94bgbk0hbl4dhlgjfjwkljmqgqrzsddvgqh"; depends=[Matrix ROCR]; }; DSBayes = derive2 { name="DSBayes"; version="1.1"; sha256="0iv4l11dww45qg8x6xcf82f9rcz8bcb9w1mj7c7ha9glv5sfb25v"; depends=[BB]; }; DSL = derive2 { name="DSL"; version="0.1-6"; sha256="0fmqxladifqqcs4mpb8a1az74fyb4gb8l2y5gzqaad3dbiz82qih"; depends=[]; }; DSpat = derive2 { name="DSpat"; version="0.1.6"; sha256="1v6dahrp8q7fx0yrwgh6lk3ll2l8lzy146r28vkhz08ab8hiw431"; depends=[mgcv RandomFields rgeos sp spatstat]; }; - DSsim = derive2 { name="DSsim"; version="1.0.4"; sha256="0mdz8m0s03cj4br8w7h493vaks37lr2qg7zjmf03qpnjdppnbnmb"; depends=[mgcv mrds shapefiles splancs]; }; + DSsim = derive2 { name="DSsim"; version="1.1.1"; sha256="1av7dvzqarap1b21cq4mhv494yh1wdxa2vi5gkvb1f9mhlx0v70c"; depends=[fields mgcv mrds rgeos shapefiles sp splancs]; }; DStree = derive2 { name="DStree"; version="1.0"; sha256="14wba25ylmsyrndh007kl377dv4r34wr1555yxl6kyxrs4yg3jir"; depends=[Ecdat pec Rcpp rpart rpart_plot survival]; }; DSviaDRM = derive2 { name="DSviaDRM"; version="1.0"; sha256="1hj2pgnldrpgapwwz1kf4k6mvyzwdvb1i6czd7sbimsx5hafwps8"; depends=[igraph ppcor]; }; - DT = derive2 { name="DT"; version="0.1"; sha256="0mj7iiy1gglw7kixybmb7kr1bcl5r006zcb3klkw7p6vvvzdm6qj"; depends=[htmltools htmlwidgets magrittr]; }; + DT = derive2 { name="DT"; version="0.2"; sha256="1g86p0jcjqi2ph5rhm45jkzibsa6yfcj8n5cg3giy90sqgjzkdx1"; depends=[htmltools htmlwidgets magrittr]; }; DTComPair = derive2 { name="DTComPair"; version="1.0.3"; sha256="1af2293ckkpz0gjcibgzzvz37852cav4wa4girpc87yn3p4ajlri"; depends=[gee PropCIs]; }; DTDA = derive2 { name="DTDA"; version="2.1-1"; sha256="0hi2qjcwd6zrzx87mdn1kns5f2h6jh7sz9jpgbi0p0i80xg8jnn3"; depends=[]; }; DTK = derive2 { name="DTK"; version="3.5"; sha256="0nxcvx25by2nfi47samzpfrd65qpgvcgd5hnq9psx83gv502g55l"; depends=[]; }; DTMCPack = derive2 { name="DTMCPack"; version="0.1-2"; sha256="0bibas5cf06qq834x9q2l2fyh6q9wrg07k8cn6almcyirzax6811"; depends=[]; }; + DTR = derive2 { name="DTR"; version="1.7"; sha256="1lzvk9ar6xf3n2vvy8vb9mvrbx3nafzzhvz5g7vf79jd71yz54jd"; depends=[aod ggplot2 survival]; }; DTRlearn = derive2 { name="DTRlearn"; version="1.2"; sha256="1dakwlafs27nkjsiknnwxnb2hgc2xdpi5mb6dmzpjig7hg2f8d3f"; depends=[ggplot2 glmnet kernlab MASS]; }; - DTRreg = derive2 { name="DTRreg"; version="1.0"; sha256="0ry6n9hl5j1s4j8n9zqvh87qbm4vm8hvix61js1zfys42hnv10af"; depends=[]; }; - DVHmetrics = derive2 { name="DVHmetrics"; version="0.3.5"; sha256="0b8wv1vz1xr7czcnva9lg69gpsryx6n1g0s901vxdriycacmyhqg"; depends=[ggplot2 KernSmooth markdown reshape2 shiny]; }; - DWreg = derive2 { name="DWreg"; version="1.0"; sha256="0nws1gr5w7rwl4agkmz98y5ljmbipwryg81kc8mn1y8ppnpx02m0"; depends=[DiscreteWeibull Ecdat maxLik]; }; + DTRreg = derive2 { name="DTRreg"; version="1.1"; sha256="113m1zhhfyjxl1b0ibjamfcpfii3sp32im4mj8lk2ql2mqw7j9yd"; depends=[]; }; + DVHmetrics = derive2 { name="DVHmetrics"; version="0.3.6"; sha256="0r3wjkr6grrh4nybrg0rs9ialrppjsdjshb47m0knn48vi0iwm77"; depends=[ggplot2 KernSmooth markdown reshape2 shiny]; }; + DWreg = derive2 { name="DWreg"; version="2.0"; sha256="0bgahzgcxz86n0ady97l48zyahv3p2iyc2ivbij1xrfx3wcx3b5n"; depends=[DiscreteWeibull Ecdat maxLik survival]; }; DYM = derive2 { name="DYM"; version="0.2"; sha256="1rk0xs224xi68f0mrygny2rklggl4grk866q7y9xck38bwy7aw94"; depends=[]; }; Daim = derive2 { name="Daim"; version="1.1.0"; sha256="19s0p3a4db89i169n2jz7lf8r7pdmrksw7m3cp9n275b5h8yjimx"; depends=[rms]; }; - Dark = derive2 { name="Dark"; version="0.9.4"; sha256="0paw34zhbi8k6pjgykxxqhpjgl8qr340dv091r9931q4mm215j2n"; depends=[]; }; + DamiaNN = derive2 { name="DamiaNN"; version="1.0.0"; sha256="09viy1lilz0b29s3myky03981bfnhxjxxgfhdah33cn5x682rbp4"; depends=[caret testthat]; }; + DandEFA = derive2 { name="DandEFA"; version="1.6"; sha256="1ir1z76c8742vqdlwv35l4rhr0x7lhghz24g35zn7b30671lypf8"; depends=[gplots polycor]; }; + Dark = derive2 { name="Dark"; version="0.9.8"; sha256="1f01aq4g50f07005c8k91cfy9hvl3fmb4yl2924d7512m3884xlv"; depends=[]; }; DatABEL = derive2 { name="DatABEL"; version="0.9-6"; sha256="1w0w3gwacqrbqjdcngdp44d2gb16pq9grq2f8j2bhbxc4nkx12n1"; depends=[]; }; - DataCombine = derive2 { name="DataCombine"; version="0.2.19"; sha256="0y7rrpfv4c63cf3v68y9bnwcx450cj9v66k8a53x62d88096f5pb"; depends=[data_table dplyr]; }; - DataExplorer = derive2 { name="DataExplorer"; version="0.2.4"; sha256="0dz2lyn67cak9ada1ghy33zk72i9j4xbz9mjbf8xffwmsrmspi04"; depends=[data_table ggplot2 gridExtra reshape2 rmarkdown scales]; }; + DataClean = derive2 { name="DataClean"; version="1.0"; sha256="0wkafjyp6c2mx7g1bpz2pbxyl5nm2wba2hly8miizv0fdc762za5"; depends=[xlsx XML]; }; + DataCombine = derive2 { name="DataCombine"; version="0.2.21"; sha256="0iwb4726bk0cjhay694dp43b1553yyk9lpxbncs85kz229b26arm"; depends=[data_table dplyr]; }; + DataExplorer = derive2 { name="DataExplorer"; version="0.4.0"; sha256="0yxx20wzdnsz924q7mh9sbbbby04vv5rybvyqbk2s78a8lqv7abw"; depends=[data_table ggplot2 gridExtra networkD3 reshape2 rmarkdown scales]; }; DataLoader = derive2 { name="DataLoader"; version="1.3"; sha256="18mih6mb95v5xjvmqwby2mma74fcxwyqdm5w8j3bhi4iwgfn6d7v"; depends=[plyr rChoiceDialogs readxl xlsx]; }; - Davies = derive2 { name="Davies"; version="1.1-8"; sha256="1wp7ifbs4vqfrn4vwh09lc53yiagpww91m5mxmcr62mjbw8q7zhr"; depends=[]; }; - DecisionCurve = derive2 { name="DecisionCurve"; version="1.1"; sha256="18966kynlpagrxciks8bxy6s31qq6zxy4vw6y24fa1axg1gfbxd9"; depends=[caret MASS pander reshape]; }; + Datasmith = derive2 { name="Datasmith"; version="1.0-1"; sha256="1ba23b8a931pvml2dzw0zkm40akcl2lb6rps6bffrl7lvxiy35y1"; depends=[igraph lbfgs MASS Matrix nloptr truncnorm vegan]; }; + Davies = derive2 { name="Davies"; version="1.1-9"; sha256="19n2szki2dc8z01zh5a7bq4scgisnpd2qqbiimgrswjrykgh2fpm"; depends=[]; }; + DeLorean = derive2 { name="DeLorean"; version="1.2.4"; sha256="1ja3kgw4rynsaaybq77axzp1m7sbqnv1pc7s9qsm1c7k6v3zjhfg"; depends=[broom coda dplyr fastICA functional ggplot2 kernlab MASS memoise Rcpp reshape2 rstan seriation stringr]; }; + DecisionCurve = derive2 { name="DecisionCurve"; version="1.3"; sha256="1sigxhm9d9k2kxap43kpnlb0r8iqphslb7wxcp44k1cdnk192311"; depends=[caret MASS pander reshape]; }; + DecorateR = derive2 { name="DecorateR"; version="0.1.1"; sha256="1dvyadlksqv8ns043yh91f6kw162k6r0zwn13j1g6pvismw04br9"; depends=[rJava RWeka RWekajars]; }; Deducer = derive2 { name="Deducer"; version="0.7-9"; sha256="14kakyf28i654pndlswjzp6h3h7szpznrg6xznqg150mmn0bs3s6"; depends=[car e1071 effects foreign ggplot2 JGR MASS multcomp plyr rJava scales]; }; DeducerExtras = derive2 { name="DeducerExtras"; version="1.7"; sha256="0sngsq31469a74y7nhskl82fwy2i0ga68m9g6b1xyhxz1a8kgvlg"; depends=[Deducer irr rJava]; }; DeducerPlugInExample = derive2 { name="DeducerPlugInExample"; version="0.2-0"; sha256="03aw7wr957xzw920ybyzxnck5kx0q2xpcrpq8jh2afyzszy6hzbi"; depends=[Deducer]; }; @@ -532,97 +680,118 @@ in with self; { DeducerSpatial = derive2 { name="DeducerSpatial"; version="0.7"; sha256="0133qk3yjcifyha7c4pqr5s0hmbci72bzgil2r0sxjmrljs3q727"; depends=[Deducer Hmisc JavaGD maptools OpenStreetMap rgdal scales sp UScensus2010]; }; DeducerSurvival = derive2 { name="DeducerSurvival"; version="0.1-0"; sha256="03qk3y4pibvrxbnxbm5rlksw807dvbilip1jbpn1r7k02ibzq676"; depends=[Deducer]; }; DeducerText = derive2 { name="DeducerText"; version="0.1-2"; sha256="0if2p9j74wa5rva4iv0i8iax22grl9j7lqcqzqlywjgqwnlzxa05"; depends=[Deducer RColorBrewer SnowballC tm wordcloud]; }; - Delaporte = derive2 { name="Delaporte"; version="2.2-3"; sha256="0iw9y4582rf736jpllw3lc24cqa4q07q9432xdxp4cl5qwgkk40l"; depends=[Rcpp]; }; - Demerelate = derive2 { name="Demerelate"; version="0.8-1"; sha256="1qngwlzzpd2cmij5ldrmhcn12s9yxd0rargc5vzvkrwcqpkgylkn"; depends=[Formula fts mlogit sfsmisc vegan]; }; + Delaporte = derive2 { name="Delaporte"; version="4.0.3"; sha256="15zwfqvi4qvv7gp34nvsbx2zhp21b6f7dyyxb09hrvll0bczxbaj"; depends=[]; }; + Demerelate = derive2 { name="Demerelate"; version="0.9-2"; sha256="00x0jjfzcq819pfrzs0jr5rvzpk4828q8kdb05icc79im1yq627v"; depends=[fts mlogit sfsmisc vegan]; }; DendSer = derive2 { name="DendSer"; version="1.0.1"; sha256="0id6pqx54zjg5bcc7qbxiigx3wyic771xn9n0hbm7yhybz6p3gz9"; depends=[gclus seriation]; }; + DengueRT = derive2 { name="DengueRT"; version="1.0.1"; sha256="11qfg4l6y3j8qh4dcsz13xjjj1n0q71c9a3c180nm5lgqv0nwb81"; depends=[drc ggplot2 nlme]; }; + DensParcorr = derive2 { name="DensParcorr"; version="1.0"; sha256="15w0ifcq1js0wyjscfhlbga77sgzqpmz7zmwa77y92iwna8q66ad"; depends=[clime gplots]; }; Density_T_HoldOut = derive2 { name="Density.T.HoldOut"; version="2.00"; sha256="0kh5nns1kqyiqqfsgvxhx774i2mf4gcim8fp5jjyq577x4679r31"; depends=[histogram]; }; DepthProc = derive2 { name="DepthProc"; version="1.0.7"; sha256="1vnx9lhcrzsyygpq1rii4crxrz4c4vs60dnw0ha0y3j1mh0yxc2k"; depends=[colorspace geometry ggplot2 lattice MASS np Rcpp RcppArmadillo rrcov sm]; }; - Deriv = derive2 { name="Deriv"; version="3.6.1"; sha256="06m0c0fxsn7yaw0z8l9bgcr6smw690wbvnk23iikkkshygp6jhrd"; depends=[]; }; - DescTools = derive2 { name="DescTools"; version="0.99.16"; sha256="1k7r6vfcpgz93qpyqbczl40zb194nzhh3l4kng4fzpqr56wp3s7w"; depends=[BH boot foreign manipulate mvtnorm Rcpp]; }; + Deriv = derive2 { name="Deriv"; version="3.8.0"; sha256="0a5kf5bb46wszq76wc7jasd4g2clmrvs86mrz14hngmhpmlcy7gp"; depends=[]; }; + DescTools = derive2 { name="DescTools"; version="0.99.19"; sha256="086ivipgzpq8pwc7r9a0jpd6qswp6b034jn603fw9rxz8ygz7rvj"; depends=[BH boot expm foreign manipulate MASS mvtnorm Rcpp]; }; DescribeDisplay = derive2 { name="DescribeDisplay"; version="0.2.5"; sha256="02b6yjgklsdjh3rikc8f5wfx08ymbygr3fyq1c134xhffhykrlgp"; depends=[GGally ggplot2 plyr reshape2 scales]; }; - DetMCD = derive2 { name="DetMCD"; version="0.0.3"; sha256="1rxc6d1m5i6a73cxf66kpk687b7dwk8bhji97vbzrz19r8hwqq2b"; depends=[pcaPP Rcpp RcppEigen robustbase]; }; + DetMCD = derive2 { name="DetMCD"; version="0.0.4"; sha256="0jdwwx15k8g3f5izcswsj28nfdw3n50x710mc938031yn7hjmkhg"; depends=[pcaPP Rcpp RcppEigen robustbase]; }; DetR = derive2 { name="DetR"; version="0.0.4"; sha256="0kvmbh7cdy3hmds1znahy1lqhd68y21kmmcki9xbq1b76n4h812n"; depends=[MASS pcaPP Rcpp RcppEigen robustbase]; }; DetSel = derive2 { name="DetSel"; version="1.0.2"; sha256="0igkccclmjwzk7sl414zlhiykym0qwaz5p76wf4i7yrpjgk7mhl9"; depends=[ash]; }; Devore7 = derive2 { name="Devore7"; version="0.7.6"; sha256="1m18p8h9vv4v0aq2fkjyj39vzb8a09azbbczhfiv4y88w540i8nw"; depends=[lattice MASS]; }; DiagTest3Grp = derive2 { name="DiagTest3Grp"; version="1.6"; sha256="04dxyyqv333rkjf2vlfpal59m7klhw6y7qilym6nw78qb1kqqys7"; depends=[car gplots KernSmooth]; }; - DiagrammeR = derive2 { name="DiagrammeR"; version="0.8.2"; sha256="0zjziph3xri9w277bi9b54n00mv7pmrygk155xzfcwvrix4g8868"; depends=[htmlwidgets rstudioapi scales stringr visNetwork]; }; + DiagrammeR = derive2 { name="DiagrammeR"; version="0.9.0"; sha256="09j6h733wm0b9k8l8va2fav6h5cxz6z07kwp29hfxgsjd97rchlg"; depends=[dplyr htmlwidgets igraph influenceR magrittr RColorBrewer rgexf rstudioapi scales stringr tibble viridis visNetwork]; }; DiagrammeRsvg = derive2 { name="DiagrammeRsvg"; version="0.1"; sha256="0j2cm1mx3zrb2k3pcrb96z2z3kws61gyyjsjjv5rqcb5lzdgi65k"; depends=[V8]; }; + DiallelAnalysisR = derive2 { name="DiallelAnalysisR"; version="0.1.1"; sha256="1diwzckn0f2dv0vj2mdzy7k3md6j472xzj82ip23adwr27vlfsi3"; depends=[ggplot2]; }; DiceDesign = derive2 { name="DiceDesign"; version="1.7"; sha256="05bmscy275077kmbmg75npnmw30kd5x5wmlizcfq771zixby3f7h"; depends=[]; }; DiceEval = derive2 { name="DiceEval"; version="1.4"; sha256="06p3v161ig714k7z59iji64xhxw1a68kqhnlwhwpjpyrx7kn137b"; depends=[DiceKriging]; }; DiceKriging = derive2 { name="DiceKriging"; version="1.5.5"; sha256="035kbk633v4kfb44wiyb556sayl73c24fc1w09r3f33shqgidzjm"; depends=[]; }; - DiceOptim = derive2 { name="DiceOptim"; version="1.5"; sha256="0ajqn5p7sl9rdj35wy45vmmzxl2d97jgz5wdq6ghdzxq523vfkz3"; depends=[DiceKriging lhs MASS mnormt rgenoud]; }; + DiceOptim = derive2 { name="DiceOptim"; version="2.0"; sha256="1hx4379yb6d36c494qc237vld4jnfxq18m994p5ii9ks6s7amifn"; depends=[DiceDesign DiceKriging mnormt pbivnorm randtoolbox rgenoud]; }; DiceView = derive2 { name="DiceView"; version="1.3-1"; sha256="0c7i1jy13d5bj822q1rp0d7gmmfjd00jaah34pnj8fzwyrq404z9"; depends=[DiceEval DiceKriging rgl]; }; + DidacticBoost = derive2 { name="DidacticBoost"; version="0.1.1"; sha256="0z1h61n6nfjvb64fgkzi1sq7ag747crhh593hxkx0cpza29778rz"; depends=[rpart]; }; DiffCorr = derive2 { name="DiffCorr"; version="0.4.1"; sha256="1kxp9dbiww086rmvmjvfhbk7jl36dkj88qwii6zg57llf7l5l4hm"; depends=[fdrtool igraph multtest pcaMethods]; }; - DiffusionRgqd = derive2 { name="DiffusionRgqd"; version="0.1.2"; sha256="19mzrsra290lapznlh9pvr4pzrapfa28pa10j8dyqnsfx3dc5r4c"; depends=[colorspace Rcpp RcppArmadillo rgl]; }; - DiffusionRjgqd = derive2 { name="DiffusionRjgqd"; version="0.1.0"; sha256="0nha6hq3fa04ymxk8hplgff7fnlrc7hx0iyws1nkgih4va6mx815"; depends=[colorspace Rcpp RcppArmadillo rgl]; }; + DiffusionRgqd = derive2 { name="DiffusionRgqd"; version="0.1.3"; sha256="1gf5jpvimfrc9ccva0jk85rl4zfkbijm2305ky1rxcgm4kgw4lax"; depends=[colorspace Rcpp RcppArmadillo rgl]; }; + DiffusionRimp = derive2 { name="DiffusionRimp"; version="0.1.2"; sha256="1h7145ldlgwrrwj4l1wxdp2rbg2pm4v3pngiq0saz0xi3vpcxwl6"; depends=[colorspace Rcpp RcppArmadillo rgl]; }; + DiffusionRjgqd = derive2 { name="DiffusionRjgqd"; version="0.1.1"; sha256="1yb1jaq324qm2x8cl3bs2dflnsx8yfygpw2m3kk5hzaai9gfkqjf"; depends=[colorspace Rcpp RcppArmadillo rgl]; }; Digiroo2 = derive2 { name="Digiroo2"; version="0.6"; sha256="1b1ahhqz5largjadlk5n6nw2183c05k28mksb1wm26y0lps0vdgr"; depends=[maptools spatstat spdep]; }; - Directional = derive2 { name="Directional"; version="1.8"; sha256="1q1fpzp83980lg04mq90kcffh3jjfp2jx3x4bc5bj6mclhpymxam"; depends=[abind doParallel fields foreach MASS]; }; + DirectStandardisation = derive2 { name="DirectStandardisation"; version="1.2"; sha256="060nscnn7wamnbb45a55wr6rirlbpwwjz0kxiw3aiqkm16ilzfbs"; depends=[]; }; + Directional = derive2 { name="Directional"; version="2.4"; sha256="1yrk0x4dydsx82415kv6a2asbd1d06ac7vyqi5j6rm4sa5cp6qmb"; depends=[doParallel foreach MASS RcppZiggurat Rfast]; }; DirichletReg = derive2 { name="DirichletReg"; version="0.6-3"; sha256="0qvnsbyn3livp5jrnxskf5sf7f2svy5mqkmnhzncb9bwf3kxpyla"; depends=[Formula maxLik rgl]; }; Disake = derive2 { name="Disake"; version="1.5"; sha256="1fw45fmnir6h34jw8917mhyz6cgzbq4ywyyf51qxhm68wgzy9h17"; depends=[]; }; DiscML = derive2 { name="DiscML"; version="1.0.1"; sha256="0qkh0yak1kmzxxx0cqb47zgrj8v2s1d5danpibwwg43j138sb73l"; depends=[ape]; }; - DiscreteInverseWeibull = derive2 { name="DiscreteInverseWeibull"; version="1.0.1"; sha256="0w0s2fixpcmcwids35xx91hll9rf9qbi7155sp90dxd3vr8c939v"; depends=[Rsolnp]; }; - DiscreteLaplace = derive2 { name="DiscreteLaplace"; version="1.1"; sha256="1pcq4kggy1z88a0car53d0f69rx2qg7q104cr0bxi6yllrb3q0nr"; depends=[Rsolnp]; }; + DiscreteInverseWeibull = derive2 { name="DiscreteInverseWeibull"; version="1.0.2"; sha256="0vjsvl4m4zccfgizv7mzidbbpzqcm101x448vllcdcrn2xlnkmnq"; depends=[Rsolnp]; }; + DiscreteLaplace = derive2 { name="DiscreteLaplace"; version="1.1.1"; sha256="17w4vjvsm7jacvwckjczyah3hglq044r3m6vqdcrg8haz884rav2"; depends=[]; }; DiscreteWeibull = derive2 { name="DiscreteWeibull"; version="1.1"; sha256="1rg3ax6jryagf5d3h8m44x9wyhr2qff3srfa9zrk6i64p1ahk9lr"; depends=[Rsolnp]; }; DiscriMiner = derive2 { name="DiscriMiner"; version="0.1-29"; sha256="1ii8aa4dwfk991qdnpmkva20wvs5fqcna9030c799ybf11qpdass"; depends=[]; }; - DisimForMixed = derive2 { name="DisimForMixed"; version="0.1"; sha256="1kl6n1i7si0r2rabxcfd78971p3ykxkq3w66ra1flzjn8gs6li38"; depends=[cluster dplyr]; }; - Distance = derive2 { name="Distance"; version="0.9.4"; sha256="18iip9xny2vazpah96qziqwql4hnxg2m8hyjhh8b34w29jv0nsm5"; depends=[mrds]; }; + DisimForMixed = derive2 { name="DisimForMixed"; version="0.2"; sha256="00mknsalikangr17946877m5fy2jgkgasgl6ng4f2nr44f0q9l6q"; depends=[cluster dplyr]; }; + Distance = derive2 { name="Distance"; version="0.9.6"; sha256="165spw4hfyjpgfwg3z5wi69spfb1x3xzag4phwrqhsnp8wb4b619"; depends=[mrds]; }; DistatisR = derive2 { name="DistatisR"; version="1.0"; sha256="1il00v26q68h5dd5c9lm2jblgn8hs6n0457r13mlw6r7pcj0158j"; depends=[car prettyGraphs]; }; DistributionUtils = derive2 { name="DistributionUtils"; version="0.5-1"; sha256="0gw531wfrjx1sxh17qh48dwbxnibgr0viga07vsp8nay7l02jap9"; depends=[RUnit]; }; DivE = derive2 { name="DivE"; version="1.0"; sha256="1ixkk8kd3ri78ykq178izib0vwppnbiwbpc1139rcl8f5giiwcdh"; depends=[deSolve FME rgeos sp]; }; DivMelt = derive2 { name="DivMelt"; version="1.0.3"; sha256="03vkz8d283l3zgqg7bh5dg3bss27pxv4qih7zwspwyjk81nw3xmr"; depends=[glmnet]; }; - DiversityOccupancy = derive2 { name="DiversityOccupancy"; version="1.0.2"; sha256="0cv0cw24x00gfy7hx97fz82j6smcmc9w9vsig00bb3ip3ba1d4y8"; depends=[dplyr ggplot2 glmulti MuMIn qpcR raster unmarked vegan]; }; + DiversityOccupancy = derive2 { name="DiversityOccupancy"; version="1.0.5"; sha256="009fy4c11w0p30jpd94vj020pnrzm8z2iwlhkdij1f14ifpamzv2"; depends=[dplyr ggplot2 glmulti MuMIn qpcR raster unmarked vegan]; }; DiversitySampler = derive2 { name="DiversitySampler"; version="2.1"; sha256="1sfx7craykb82ncphvdj19mzc0kwzafhxlk9jcxkskygrlwsxfgg"; depends=[]; }; DnE = derive2 { name="DnE"; version="2.1.0"; sha256="02cbfb3m9xf24wkgqc06k3k0rx7qlqh4ma43khg6fpvif6yyahrn"; depends=[]; }; - DoE_base = derive2 { name="DoE.base"; version="0.28"; sha256="0w68gg1829dhfm4valw66ld4ccapygpcpds7j2mnmlq9g4l847ca"; depends=[combinat conf_design MASS vcd]; }; + DoE_base = derive2 { name="DoE.base"; version="0.29"; sha256="013p4y7imf6nb1mq7dx62c0nq5shf1yzdlfbri86icrdm00s63fd"; depends=[combinat conf_design lattice MASS vcd]; }; DoE_wrapper = derive2 { name="DoE.wrapper"; version="0.8-10"; sha256="12q3arfm76x9j8qnrmw07jh904qdqz59ga1zk8m3n17prr11vrgb"; depends=[AlgDesign DiceDesign DoE_base FrF2 lhs rsm]; }; + DoTC = derive2 { name="DoTC"; version="0.2"; sha256="1hjjkmxrbiysy3xl6n4q7kxcygdq68jcsgki1p937zj9a17sa62j"; depends=[ggplot2 plyr]; }; Dodge = derive2 { name="Dodge"; version="0.8"; sha256="1vnvqb2qvl6c13s48pyfn1g6yfhc60ql3vn7yh2zymxcsr1gxgcw"; depends=[]; }; - Dominance = derive2 { name="Dominance"; version="1.0.0"; sha256="0xcmslzfdcy826vcnlybhdyym5kqkrdqidq6jn10s4jic7jk8nl3"; depends=[chron gdata igraph]; }; - DoseFinding = derive2 { name="DoseFinding"; version="0.9-14"; sha256="04f0v3vcw0p10ahi2cyqndfwjqgvmp8ghxc3nmikhw7prp9yimzn"; depends=[lattice mvtnorm]; }; + Dominance = derive2 { name="Dominance"; version="1.0.17"; sha256="07xsyadmq47szvp1vnf53ijq43pwd9g7554fgl803fhkwq6b3jgh"; depends=[chron gdata igraph XLConnect]; }; + DoseFinding = derive2 { name="DoseFinding"; version="0.9-15"; sha256="0sc3z62jn2jh6kjacqpf9vnpv0wzihcln24m5ipspmz0n1b0nvz7"; depends=[lattice mvtnorm]; }; DoubleCone = derive2 { name="DoubleCone"; version="1.0"; sha256="1pba9ypp0n3i2k3ji1x8j7h548pfam9z99hxylcjcxnnvc7xs2fw"; depends=[coneproj MASS Matrix]; }; DoubleExpSeq = derive2 { name="DoubleExpSeq"; version="1.1"; sha256="00xpj5xmpgmvp6h76imkmghrnlfk6c50ydvv0jram6m6ix3z8323"; depends=[numDeriv]; }; Dowd = derive2 { name="Dowd"; version="0.12"; sha256="1fgaq22n7gm8pqxdfkiayqgjfqjn7knjjjr1x12jgv77cv08xyjk"; depends=[bootstrap forecast MASS]; }; - DrugClust = derive2 { name="DrugClust"; version="0.1"; sha256="1p3pxc1qxp26sxa52877dq1mf3nwx7vbvcr8d1i8ccmhmccayrdb"; depends=[cclust cluster e1071 MESS ROCR]; }; + DrBats = derive2 { name="DrBats"; version="0.1.4"; sha256="0jzl1jklxsbqf5hv3a71lckk51jxi1lnbk5zmvd4x3y9b9azl2cq"; depends=[ade4 coda MASS Matrix rstan sde]; }; + DrillR = derive2 { name="DrillR"; version="0.1"; sha256="0n7pim5kk0wfdjcc67v4vvdb7wyhn5bcgi2a12nbyfyydss7pk1g"; depends=[httr]; }; + DrugClust = derive2 { name="DrugClust"; version="0.2"; sha256="0acvjqwzkbjmy101m501l7fkfxzkp6zflwvn56li5307xv9ggnfg"; depends=[cclust cluster e1071 MESS ROCR]; }; + DstarM = derive2 { name="DstarM"; version="0.2.1"; sha256="166843l9v99rg59iz17qs2gb45qjkxfmg676hd0krg5mhq7xgk8b"; depends=[DEoptim ggplot2 rtdists RWiener]; }; DunnettTests = derive2 { name="DunnettTests"; version="2.0"; sha256="1sf0bdxays10n8jh2qy85fv7p593x58d4pas9dwlvvah0bddhggg"; depends=[mvtnorm]; }; + DySeq = derive2 { name="DySeq"; version="0.13"; sha256="0a1p2l4rpafpbggi3vshcd7xkkn1g5jy93hypgk9g7qskvhzyq0n"; depends=[MASS]; }; DynClust = derive2 { name="DynClust"; version="3.13"; sha256="020zl2yljp47r03rcbzrbdmwk482xx27awwzv4kdrbchbzwhxqgm"; depends=[]; }; - DynNom = derive2 { name="DynNom"; version="2.0"; sha256="1ckdx2cn5ylsks65ydlhjcqsvpdbm6hwm67snqn9zj4isqb017sf"; depends=[compare ggplot2 shiny stargazer survival]; }; + DynNom = derive2 { name="DynNom"; version="4.0"; sha256="16xsgm6nb8qdk5j0srh6w7jda807sh3m73p0sbvvb5h4rf8vdy06"; depends=[BBmisc compare ggplot2 rms shiny stargazer survival]; }; DynTxRegime = derive2 { name="DynTxRegime"; version="2.1"; sha256="0dxf16zpj6cyx7afbvr4w4d76w4vshbvvkkqla68dbav0yvy7z7i"; depends=[modelObj]; }; DynamicDistribution = derive2 { name="DynamicDistribution"; version="1.1"; sha256="1s78hpj2pxjs4vixin1i816qjbn3wk7b8rd2zdjp4d4rbxifcqf5"; depends=[]; }; + EBASS = derive2 { name="EBASS"; version="0.1"; sha256="14hxzj06wrc4ihflr7dqk28fsjwbcizr0jy54vhv0mk1y1gd4201"; depends=[]; }; EBEN = derive2 { name="EBEN"; version="4.6"; sha256="0gcf5b2viiq69vs8bd8nhk65g9sbzgg212w7zpnz4y6cv9jkk5zz"; depends=[]; }; EBMAforecast = derive2 { name="EBMAforecast"; version="0.52"; sha256="1809ia0dpkilprv7x19drp1v2qckk0wm596f1i1vl0k37wbhcziv"; depends=[abind Hmisc plyr Rcpp separationplot]; }; - EBS = derive2 { name="EBS"; version="3.0"; sha256="0nrqglbfr7wagd4xrk5jx0kficjgvk7wqwzqrbs589dkll24sn5b"; depends=[MASS]; }; + EBS = derive2 { name="EBS"; version="3.1"; sha256="0flj62lcshrcn5n4fmssgb2qdvg0l6r71rsn3h0clfjhbg96pqz5"; depends=[MASS]; }; EBglmnet = derive2 { name="EBglmnet"; version="4.1"; sha256="0wlscmimj74alcr8k5h1g3alvlpss4g2ah7zkpd42akam3zb4s5z"; depends=[]; }; + EBrank = derive2 { name="EBrank"; version="1.0.0"; sha256="1qzhrr3n2zv31mjp224b35324nr9nigzazyfv11j4zhwl1ipf632"; depends=[]; }; ECOSolveR = derive2 { name="ECOSolveR"; version="0.2"; sha256="1y9gl6gd8im7zhn5j4vhzk0ck620n4l9kwgxig2r27q6h652fqn9"; depends=[Matrix]; }; - ECctmc = derive2 { name="ECctmc"; version="0.1.0"; sha256="09m0hfiji488nkk5b6dbylk5a06a27gzrzaa81v8gfb5mp7vy890"; depends=[Rcpp RcppArmadillo]; }; + ECctmc = derive2 { name="ECctmc"; version="0.2.3"; sha256="1iplg647qs52007h4vx507s643h7knisravif3v6rfyp6fhfl7v2"; depends=[Rcpp RcppArmadillo]; }; + ECharts2Shiny = derive2 { name="ECharts2Shiny"; version="0.2.5"; sha256="0ml623q679id989gbr9k52719blgbhfcsrzi9xaqzvwcg5qq9bi5"; depends=[jsonlite shiny]; }; EDFIR = derive2 { name="EDFIR"; version="1.0"; sha256="0nv1badyg1dri6z91fvs68a72g22vdg0rpi3fkpxw527r11fvrrv"; depends=[geometry lpSolve MASS vertexenum]; }; - EDISON = derive2 { name="EDISON"; version="1.1"; sha256="09xw4p4hwj8djq143wfdcqhr2mhwynj4ixj3ma7crhqidgal169p"; depends=[corpcor MASS]; }; - EDR = derive2 { name="EDR"; version="0.6-5.1"; sha256="10ldygd1ymc4s9gqhhnpipggsiv4rwbgajvdk4mykkg3zmz7cbpm"; depends=[]; }; - EEM = derive2 { name="EEM"; version="1.0.4"; sha256="15rs8bfpfz97q133fas21ghgyppw1rl526fs1dxmhn64bvzsr37j"; depends=[colorRamps R_utils readxl reshape2 sp]; }; + EDISON = derive2 { name="EDISON"; version="1.1.1"; sha256="12cc13ng5fc4nm0nvqxqplpb2ycz4cln73xqkk85dka2fnpykjc7"; depends=[corpcor MASS]; }; + EDR = derive2 { name="EDR"; version="0.6-6"; sha256="10m92p3fy5z2kca4h9awwmvs4pqri92habkvgjvjl5ira09yvyi7"; depends=[sm]; }; + EEM = derive2 { name="EEM"; version="1.1.1"; sha256="0w20kakgcpyhfi7fcrss4w67pbaj87hi2scy7g05q3sg2ygac7gj"; depends=[colorRamps ggplot2 R_utils reshape2 sp]; }; + EFAutilities = derive2 { name="EFAutilities"; version="0.1.0"; sha256="1kbbhwvqj6c5n2nknjy7kfm4i0zhil5x8rsl1k4xh1zcvnlj22bs"; depends=[GPArotation mvtnorm]; }; EFDR = derive2 { name="EFDR"; version="0.1.1"; sha256="0jgznwrd40g9xmvhrd7b441g79x41ppfdn6vbsbzc0k5ym1wzb1p"; depends=[doParallel dplyr foreach gstat Matrix sp tidyr waveslim]; }; - EGRET = derive2 { name="EGRET"; version="2.4.3"; sha256="07b68jk2jakacdcs4siy4smq4d5afjckq5xas1aqq42nzwqlfz65"; depends=[dataRetrieval fields lubridate survival]; }; - EGRETci = derive2 { name="EGRETci"; version="1.0.0"; sha256="1pz0l59hm7yy30p6albx3b4nm1qfbphj9jkz79a5mljk1fx8dbrz"; depends=[binom EGRET lubridate]; }; + EFS = derive2 { name="EFS"; version="1.0.1"; sha256="0zjspy4myxi1z16pbs515c8zylkbykdadsqkgdd9k0pr0mb7cnck"; depends=[party pROC randomForest ROCR]; }; + EGRET = derive2 { name="EGRET"; version="2.6.0"; sha256="0alr47pmq1ml64j500vkqwmvrqa3i1ccbf3w7w44fbbjy1vfp04a"; depends=[dataRetrieval fields lubridate survival truncnorm]; }; + EGRETci = derive2 { name="EGRETci"; version="1.0.2"; sha256="15jf4bgxvqqz64y4i6ncfj0ymgwmhahxlhdnfps4zj7gwxgcbvqh"; depends=[binom EGRET lubridate]; }; EIAdata = derive2 { name="EIAdata"; version="0.0.3"; sha256="12jgw3vi2fminwa4lszczdr4j4svn2k024462sgj1sn07a4a4z2s"; depends=[plyr XML xts zoo]; }; EILA = derive2 { name="EILA"; version="0.1-2"; sha256="0wxl9k4fa0f7jadw3lvn97iwy7n2d02m8wvm9slnhr2n8r8sx3hb"; depends=[class quantreg]; }; EL = derive2 { name="EL"; version="1.0"; sha256="13r7vjy2608h8jph8kwy69rnkg98b2v69117nrl728r3ayc46a18"; depends=[]; }; ELMR = derive2 { name="ELMR"; version="1.0"; sha256="0pd3drv485xbdyfwm28kjpd0nd0zv1khfwzki1gh5p1gz9ndwr2x"; depends=[]; }; - ELT = derive2 { name="ELT"; version="1.5"; sha256="1nrq3dmlgh793ax12a1bm85h5kcrs99qjxiqa1qp9caq4zr3mzdg"; depends=[lattice latticeExtra locfit xlsx]; }; + ELT = derive2 { name="ELT"; version="1.6"; sha256="0vbrf912m6f80sqyyrp0z4jhq38fnmcy6hgwy0qh8wgk3p1aqm7c"; depends=[lattice latticeExtra locfit xlsx]; }; ELYP = derive2 { name="ELYP"; version="0.7-3"; sha256="1d91r59m85k91kcjjlvhvbsa9855fyd702bwj7drvk36ssfr8qb9"; depends=[survival]; }; - EMA = derive2 { name="EMA"; version="1.4.4"; sha256="1hqkan9k6ps4qckjrhsgxzham106fm38m5rgayz8i2ji3spvbfca"; depends=[affy AnnotationDbi biomaRt cluster FactoMineR gcrma GSA heatmap_plus MASS multtest siggenes survival xtable]; }; + EMA = derive2 { name="EMA"; version="1.4.5"; sha256="16iq5a3yrilchqmkyb4g5bmmgpw6psm88n52gmlax75xbiwk8261"; depends=[affy AnnotationDbi Biobase biomaRt cluster FactoMineR gcrma GSA heatmap_plus MASS multtest siggenes survival xtable]; }; EMC = derive2 { name="EMC"; version="1.3"; sha256="0sdpxf229z3j67mr9s7z4adzvvphgvynna09xkkpdj21mpml23p6"; depends=[MASS mvtnorm]; }; - EMCluster = derive2 { name="EMCluster"; version="0.2-5"; sha256="0nzbpx5pl414bpdqhfr4zv3gkrd77ifl1ysb4acw4h7f92hcd4lh"; depends=[MASS Matrix]; }; + EMCluster = derive2 { name="EMCluster"; version="0.2-6"; sha256="1sd6vlli7qr4859hydyshkzrrfkgb05k97y3vhx3dp2q5xz8s52b"; depends=[MASS Matrix]; }; EMD = derive2 { name="EMD"; version="1.5.7"; sha256="0m2g7akg9h964d6qr1mj20h9pcb2fcmala3skhl0qpy8qz01w5ck"; depends=[fields locfit]; }; + EML = derive2 { name="EML"; version="1.0.1"; sha256="0q5s4gwc3g49v43ffnn7lh5lyxg9bnhcigxwinc1gbry5j8crngv"; depends=[stringr XML]; }; EMMAgeo = derive2 { name="EMMAgeo"; version="0.9.4"; sha256="1i36s8mzp04alff6lqkc798xjzgn61wdpl5i0awjdvg26ka8v7lj"; depends=[GPArotation limSolve shape shiny]; }; EMMIXcontrasts = derive2 { name="EMMIXcontrasts"; version="1.0.0"; sha256="1q7bwf7kkpraj38lz5s1lhhghp7a5lzyj5b9x8024g6rh2qlwp7v"; depends=[]; }; + EMMIXcskew = derive2 { name="EMMIXcskew"; version="0.9-4"; sha256="0gzy3nrqw880p4sr08qfbyyjqgq08brfm9pk7xkibdnvlrl6mld2"; depends=[MASS mnormt rgl]; }; EMMIXskew = derive2 { name="EMMIXskew"; version="1.0.1"; sha256="16jkq0a9k1gf6gia8r65nwa2lh8zny4jmnq51g2rcqm44s5ylqbh"; depends=[KernSmooth lattice mvtnorm]; }; EMMIXuskew = derive2 { name="EMMIXuskew"; version="0.11-6"; sha256="0japf0l0sj84jna7b5kirp6pgqa4c923ldwphb16ch2xxrgk5n5k"; depends=[MASS]; }; + EMMLi = derive2 { name="EMMLi"; version="0.0.3"; sha256="1b36kyzvrdljmkysggv8jyaip78pj32ms0xhj2y568hd419lkh2p"; depends=[]; }; EMMREML = derive2 { name="EMMREML"; version="3.1"; sha256="0qwj4jlfhppjxwcjldh49b6idnagazrxybaid3k2c269wvxwvddq"; depends=[Matrix]; }; EMP = derive2 { name="EMP"; version="2.0.1"; sha256="1zdy05jfhcgj6415pnm079v8xjg90n3akp1rwq65jbqdar38zj4y"; depends=[ROCR]; }; + EMSC = derive2 { name="EMSC"; version="0.8"; sha256="1fkwmfiw3cg0wkzcwl68dxzyiz7n35jmvjhq6jxdmb59p10f5z1j"; depends=[pracma]; }; + EMSaov = derive2 { name="EMSaov"; version="2.2"; sha256="12y0mj72la4ciwzgr38w9ssik4hixjf5kjsjwrvz6z59hi0ldfly"; depends=[shiny]; }; EMT = derive2 { name="EMT"; version="1.1"; sha256="0m3av1x3jcp3hxnzrfb128kch9gy2zlr6wpy96c5c8kgbngndmph"; depends=[]; }; EMVC = derive2 { name="EMVC"; version="0.1"; sha256="1725zrvq419yj0gd79h8bm56lv2mmk296wq3wapivcy6xn0j97jh"; depends=[]; }; - EMbC = derive2 { name="EMbC"; version="1.9.4"; sha256="1an5585sfc0h5vxd964d28yz6awbx4bbfzaia0v90jmkf9k0apca"; depends=[maptools mnormt move RColorBrewer sp]; }; - ENMeval = derive2 { name="ENMeval"; version="0.2.1"; sha256="1m0h0zi3bxyabj1lq4jh3sbfiy9lbzgxafmy9j4nii7n1f7pf3rq"; depends=[dismo doParallel foreach raster rJava]; }; - ENiRG = derive2 { name="ENiRG"; version="0.1"; sha256="1cnl1mjl5y1rc6fv7c9jw2lkm898l3flfrj3idx9v1brjzyx5xlf"; depends=[ade4 fgui gdata miniGUI R_utils raster sp spgrass6]; }; + EMbC = derive2 { name="EMbC"; version="2.0.0"; sha256="11qnln7a36zcrycbs0lz0qdvili25adv0rxdybmb6kk20a6q1lwf"; depends=[maptools mnormt RColorBrewer Rcpp RcppArmadillo sp]; }; + ENMeval = derive2 { name="ENMeval"; version="0.2.2"; sha256="1w8mjcmxxkx8lxxzzbjpv1i7cm6l8hhml7ynp80s9yiprr04bq9c"; depends=[dismo doParallel foreach raster rJava]; }; + ENiRG = derive2 { name="ENiRG"; version="1.0.1"; sha256="0yjy7g0pia4g18h7mawkxn77dnnqcajnbml21rrv63qwlr347355"; depends=[ade4 fgui gdata miniGUI raster rgrass7 sp]; }; ENmisc = derive2 { name="ENmisc"; version="1.2-7"; sha256="07rix4nbwx3a4p2fif4wxbm0nh0qr7wbs7nfx2fblafxfzhh6jc7"; depends=[Hmisc RColorBrewer vcd]; }; - EPGLM = derive2 { name="EPGLM"; version="1.1.1"; sha256="1lbzp36lbk9gnbrqxyxgrdrn8rmi5vdxnqxpqdfd09dck263gy6p"; depends=[BH MASS Rcpp RcppArmadillo]; }; + EPGLM = derive2 { name="EPGLM"; version="1.1.2"; sha256="1x7n16pjr38gh5llraszjwgm650zmcm14j6v1kc5k81g4ghgdsq6"; depends=[BH MASS Rcpp RcppArmadillo]; }; EQL = derive2 { name="EQL"; version="1.0-0"; sha256="0lxfiizkvsfls1km1zr9v980191af6qjrxwcqsa2n6ygzcb17dp5"; depends=[lattice ttutils]; }; ERP = derive2 { name="ERP"; version="1.1"; sha256="00w9zz5rp1asvk13sj9gkd14n2akbclsyz26jp5a3r85fh6chdm0"; depends=[fdrtool mnormt]; }; ES = derive2 { name="ES"; version="1.0"; sha256="1rapwf6kryr6allzbjk6wmxpj9idd3xlnh87rwbh6196xb7rp8lv"; depends=[]; }; @@ -630,50 +799,58 @@ in with self; { ESG = derive2 { name="ESG"; version="0.1"; sha256="1jw6239asv6lwxrz5v0r5pzg6v500bqxg8361sh4jj67rsrc7g9m"; depends=[]; }; ESGtoolkit = derive2 { name="ESGtoolkit"; version="0.1"; sha256="0r09arhsvamdyahini5yhgc43msdxwvn45l57xbfszahsnr3b3aq"; depends=[CDVine ggplot2 gridExtra Rcpp reshape2 ycinterextra]; }; ESKNN = derive2 { name="ESKNN"; version="1.0"; sha256="1w43v3q9i7dkx1qwcl5cgh9wdgg5r4s7vfbkk0vcsq9qd8nbcvfy"; depends=[caret]; }; - ETAS = derive2 { name="ETAS"; version="0.2"; sha256="0vj2ghxs43x81p0zmz2z52mlibs6rmqizd5ydhs382w689krhr80"; depends=[maps spatstat]; }; + ETAS = derive2 { name="ETAS"; version="0.4.1"; sha256="1zaz75r4vp79szsa4la81jahci04iiv7kpqlka1zllgpg4qkg4bw"; depends=[fields maps Rcpp spatstat]; }; ETC = derive2 { name="ETC"; version="1.3"; sha256="1nvb9n0my7h1kq996mk91canxi6vxy3mzhrshrvm13ixvl48lkkh"; depends=[mvtnorm]; }; ETLUtils = derive2 { name="ETLUtils"; version="1.3"; sha256="13xq9i9fr34kx1nym7nr02gynshzm4jjn4qzx6ydg044b7xl57jp"; depends=[bit ff]; }; EW = derive2 { name="EW"; version="1.1"; sha256="0wc3v9qisiikvlp28xhlgsxb92fhkm6vslia6d0vpihyai0p1h1g"; depends=[]; }; EWGoF = derive2 { name="EWGoF"; version="2.1"; sha256="10p392n003sxn8l9sfnksi789k1w191rmkah6gxhji5f41gib5rh"; depends=[Rcpp]; }; + EXRQ = derive2 { name="EXRQ"; version="1.0"; sha256="1iqsr52sl2j5q03122a7rsp6n6a2bkysk2r908c89l36gk4sj2i5"; depends=[mnormt quantreg]; }; EasyABC = derive2 { name="EasyABC"; version="1.5"; sha256="17qv6y8sf2iwwqcv5wfg6sii259gv5jyr72dnfpir2bw78wb3mqx"; depends=[abc lhs MASS mnormt pls tensorA]; }; EasyHTMLReport = derive2 { name="EasyHTMLReport"; version="0.1.1"; sha256="1hgg8i7py7bx48cldyc7yydf0bggmbj3fx3kwiv9jh1x5wyh929z"; depends=[base64enc ggplot2 knitr markdown reshape2 scales xtable]; }; EasyMARK = derive2 { name="EasyMARK"; version="1.0"; sha256="10slkblbyxq98c3sxgs194dnkx996khfcpxj6jhz355dp35z7c9d"; depends=[coda doParallel foreach MASS random rjags stringr]; }; EasyStrata = derive2 { name="EasyStrata"; version="8.6"; sha256="0agmap9lmqbpfw8ijwxmjkcqjvc1ng0jsadkqpfz71a963nkqdcl"; depends=[Cairo plotrix]; }; EbayesThresh = derive2 { name="EbayesThresh"; version="1.3.2"; sha256="0n7cr917jrvmgwfqki7shvz9g9zpmbz9z8hm5ax7s8nnfzphrh4g"; depends=[]; }; - Ecdat = derive2 { name="Ecdat"; version="0.2-9"; sha256="076di40cvfzm7zkj5f08zlk1wizzi7syfp0ghsrr4q61n5c1r72b"; depends=[Ecfun]; }; - Ecfun = derive2 { name="Ecfun"; version="0.1-6"; sha256="1mz2smbxyjzc6vf3vhycgvjwqq6hr22vxikrl0hx185qxgwbgrxn"; depends=[fda gdata jpeg MASS RCurl stringi TeachingDemos tis XML]; }; - EcoGenetics = derive2 { name="EcoGenetics"; version="1.2.0-2"; sha256="1c2pz2a8f57fhq0sk4jgfi4v8jwznsjaqx4jnziz3lak7gmcrwql"; depends=[ggplot2 party raster reshape2 rgdal rkt SoDA sp]; }; + Ecdat = derive2 { name="Ecdat"; version="0.3-1"; sha256="1lvfp2ih8ng3kn3cia687j5fd27iwiak7gk3bhgjp8bnlgblqq02"; depends=[Ecfun]; }; + Ecfun = derive2 { name="Ecfun"; version="0.1-7"; sha256="0s4hhvwyi411xr7c1fv098nmwqjcyvh8vy65j5w9hd80l864lvkl"; depends=[fda gdata jpeg MASS RCurl stringi TeachingDemos tis XML]; }; + EcoGenetics = derive2 { name="EcoGenetics"; version="1.2.0-3"; sha256="09mrbg99id65y2wnmkpdjn39rd7gffa9rwqymqkcmrlz95pizkrm"; depends=[ggplot2 party raster reshape2 rgdal rkt SoDA sp]; }; EcoHydRology = derive2 { name="EcoHydRology"; version="0.4.12"; sha256="03dzdw79s0cnnd7mv6wfxw374yf66dlcmj10xh6sh5i352697xp1"; depends=[DEoptim operators topmodel XML]; }; EcoSimR = derive2 { name="EcoSimR"; version="0.1.0"; sha256="13ni3vdfahqjyb9xrv7fmnbj5m5n3jwfh1bl9r0bvhi5w72kb7rj"; depends=[MASS]; }; EcoTroph = derive2 { name="EcoTroph"; version="1.6"; sha256="0zi6g0ra107s47r32mm9h6r1wll3avi0mpjmhcr0nj9y48nv14w3"; depends=[XML]; }; - EcoVirtual = derive2 { name="EcoVirtual"; version="0.1"; sha256="1c815kxljk4qhw0zs28w16ggasfyyyb6aggffx1m1q21s63h6c8h"; depends=[]; }; - EditImputeCont = derive2 { name="EditImputeCont"; version="1.0.1"; sha256="0c2gagvih77a0k0lg42xipmd396fdpwjabc1syyb3i16b853xggm"; depends=[editrules Rcpp]; }; - EffectLiteR = derive2 { name="EffectLiteR"; version="0.4-1"; sha256="1lqgvs75airbmmwqhf6zfw1mpvy9dj51f92jx78mkp35ynnlny1i"; depends=[car foreign ggplot2 lavaan lavaan_survey nnet shiny survey]; }; - EffectStars = derive2 { name="EffectStars"; version="1.6"; sha256="0chwbvsjfq6flxrbwfm141rnky9b8l1b0scqxxxijyrw4y0f4a8z"; depends=[VGAM]; }; - EffectTreat = derive2 { name="EffectTreat"; version="0.2"; sha256="0az4ajqq98adxrr1wj8pkv16f2g4gg3dikizvp7qa1amcnpahjx3"; depends=[]; }; + EcoVirtual = derive2 { name="EcoVirtual"; version="1.0"; sha256="1adhxwi22psr81xh1szjvn6ycv4zw31xjnswk65iazk3sc4vz7wc"; depends=[]; }; + EconDemand = derive2 { name="EconDemand"; version="1.0"; sha256="1slpwiaxj7w21zdri9myrzwbwzl62m3cnp0g4fr2rkdlzgb6j5yj"; depends=[]; }; + EditImputeCont = derive2 { name="EditImputeCont"; version="1.0.2"; sha256="1l847892grqp1zf8lbvhxcimw06xcmikyry0wn1wf3l4hw4hiamv"; depends=[editrules Rcpp]; }; + EffectLiteR = derive2 { name="EffectLiteR"; version="0.4-2"; sha256="1vkg5gi0gysnw0gz9ah8pdnnlkdfsz0jy53ps2jnnpy8lbr45zc9"; depends=[car foreign ggplot2 lavaan lavaan_survey nnet shiny survey]; }; + EffectStars = derive2 { name="EffectStars"; version="1.7"; sha256="068hk7l7arnj7qrcsavvki06rwrivkmz82mddhndx9vzbiidiklm"; depends=[VGAM]; }; + EffectStars2 = derive2 { name="EffectStars2"; version="0.1-1"; sha256="1yffwnr563vzdq0ph9xs3w0zg5c7l3ima6skn8cqiafr21w332ss"; depends=[miscTools VGAM]; }; + EffectTreat = derive2 { name="EffectTreat"; version="0.3"; sha256="1y8b1867idjbd7i39hhryg4nyijlv6d828z0jspp80fka3sp8xpw"; depends=[]; }; EffectsRelBaseline = derive2 { name="EffectsRelBaseline"; version="0.5"; sha256="1dsnakcrgmlx44599ii92wvhxbxrh0hij59709wsskx1x1152zvh"; depends=[]; }; + EfficientMaxEigenpair = derive2 { name="EfficientMaxEigenpair"; version="0.1.0"; sha256="07d1da73z16swz4dw2g1mcx1k80yghd6nb9818zax61f37wjmin1"; depends=[]; }; ElemStatLearn = derive2 { name="ElemStatLearn"; version="2015.6.26"; sha256="0r8d0fm4yx7iawcsikksd7i01kbyqz3xkdls74f3ngkvj4iq1rqc"; depends=[]; }; EloChoice = derive2 { name="EloChoice"; version="0.29"; sha256="1r54laim7i8hzgyir47xq7qw8hxzsdw1ss10sljq1rm2lpsci6wk"; depends=[Rcpp RcppArmadillo]; }; EloRating = derive2 { name="EloRating"; version="0.43"; sha256="0gzpi4qjiqn0lzjwy37pkz6fg7dkp2hv2dfqgzfk32wsj0bswgab"; depends=[zoo]; }; ElstonStewart = derive2 { name="ElstonStewart"; version="1.1"; sha256="1y2g4x3fhi78c2406bk8r8c3x9zhx8ya3qlbnypdm65j0minixsn"; depends=[digest kinship2]; }; - EmpiricalCalibration = derive2 { name="EmpiricalCalibration"; version="1.1.0"; sha256="0l5xmsldc33v6y7f4s6a182axgm2p68nymx5hbj5bb09dxjbb9gg"; depends=[ggplot2 MASS]; }; + EmiStatR = derive2 { name="EmiStatR"; version="1.2.0"; sha256="0g1bs8018vxgnwb578iz5nin13khk7wjj0in47y250j2kcz5nvgn"; depends=[doParallel foreach lattice shiny]; }; + EmpiricalCalibration = derive2 { name="EmpiricalCalibration"; version="1.2.0"; sha256="034rvdfvqqx4prdchdpl04iyd37h37j3gxfscm8idi35nannjph0"; depends=[ggplot2]; }; EnQuireR = derive2 { name="EnQuireR"; version="0.10"; sha256="00kyclcr8da79lwpqa1vzkwn6pgf197h2biackwgphb0byhi8ssx"; depends=[FactoMineR MASS Rcmdr SensoMineR]; }; EngrExpt = derive2 { name="EngrExpt"; version="0.1-8"; sha256="0zclvckj2i7j4kfs58hcjcl722vl2y6dcnjz238cjfgwv279gqhp"; depends=[lattice]; }; - EnsembleBase = derive2 { name="EnsembleBase"; version="1.0.1"; sha256="0vyg4lhal05s0fjz21pdk144a3j06594jalcmic1y6adq7dc2inq"; depends=[bartMachine doParallel e1071 foreach gbm glmnet kknn nnet randomForest]; }; - EnsembleCV = derive2 { name="EnsembleCV"; version="0.7.1"; sha256="14mvwfjbhsrq9q7k5ph5sf9zriazgfby376v1zjm82r93y4samsf"; depends=[EnsembleBase]; }; - EnsemblePCReg = derive2 { name="EnsemblePCReg"; version="1.0.0"; sha256="16k7ki8qq9bci46dga6visrpccia5rhlv3zq4jj936wkl3q28288"; depends=[EnsembleBase]; }; - EnsemblePenReg = derive2 { name="EnsemblePenReg"; version="0.6"; sha256="0fjp50jbnbhvyd7srvhy0ipysm192d8ikg9yra2vch33zrid2xbm"; depends=[EnsembleBase glmnet]; }; + EnsCat = derive2 { name="EnsCat"; version="1.1"; sha256="1rp354fqq2ihjrmqw9j1qdy86md80xml5sgh2zbyabw3zddmgyn2"; depends=[dendextend ggdendro ggplot2 seqinr]; }; + EnsembleBase = derive2 { name="EnsembleBase"; version="1.0.2"; sha256="1wbkh89gz6m2m9hxbcymsymz3b7pynhdwfyq4qg3h4wn8409anxy"; depends=[bartMachine doParallel e1071 foreach gbm glmnet kknn nnet randomForest]; }; + EnsembleCV = derive2 { name="EnsembleCV"; version="0.8"; sha256="1r9nmi2278lrwp5lpxhi78k10x8a5f5rh9xf1z5gfkc0bmpkhkvz"; depends=[EnsembleBase]; }; + EnsemblePCReg = derive2 { name="EnsemblePCReg"; version="1.1.1"; sha256="1x9n8wjr2cdmlc36c2g7sra7f0cjmgwiyxvll9byfm1lncni2kn9"; depends=[EnsembleBase]; }; + EnsemblePenReg = derive2 { name="EnsemblePenReg"; version="0.7"; sha256="00218yh0vzlb5g94asq5nz4i8blppskdzz9fl4c0v3fld3kxz2md"; depends=[EnsembleBase glmnet]; }; EntropyEstimation = derive2 { name="EntropyEstimation"; version="1.2"; sha256="13kb83lfpkw6yq687j0ci23yn5c9dqjibybyyaplk6jixy08lrvy"; depends=[]; }; EntropyExplorer = derive2 { name="EntropyExplorer"; version="1.1"; sha256="02ljnq9ayxg4lrrnb6nlxr1k5ki8dd5i8hjb9fvvb19hwr2id5h4"; depends=[]; }; - EnvNicheR = derive2 { name="EnvNicheR"; version="1.3"; sha256="1j5r6nv1m1jc76jz45snxc2cidm8cxcx11dv4k4hk46bmp60iq7p"; depends=[IDPmisc]; }; - EnvStats = derive2 { name="EnvStats"; version="2.0.2"; sha256="0lr6znl1cz7a08h31r3r095mlhdgwknj469vd7mb1y95807y8g38"; depends=[MASS]; }; + EnvCpt = derive2 { name="EnvCpt"; version="0.1.1"; sha256="052yz26lypcffwnxdqxm2d029rzcdkw5dvf2xyvyhi5lcnxjrn9r"; depends=[changepoint forecast MASS zoo]; }; + EnvNicheR = derive2 { name="EnvNicheR"; version="1.4"; sha256="0hxx9wmzlw0clvdgdsy8msc78nvm81j3naxr57i7lqqa360sjy3a"; depends=[IDPmisc]; }; + EnvStats = derive2 { name="EnvStats"; version="2.2.1"; sha256="0gjjw2pvqh4m18f7m0pkcr1lsryqmfai1kqc34146h1a4wv7gbdv"; depends=[ggplot2 MASS]; }; EnviroStat = derive2 { name="EnviroStat"; version="0.4-2"; sha256="0ckax6vkx0vwczn21nm1dr8skvpm59xs3dgsa5bs54a3xhn5z9hs"; depends=[MASS]; }; - Epi = derive2 { name="Epi"; version="2.0"; sha256="04ahl3hvbzjx56c063crq52jmcp5vil5h95bk2vzf4xifhxalspm"; depends=[cmprsk etm MASS plyr survival]; }; + Epi = derive2 { name="Epi"; version="2.7"; sha256="0pc1k9xr6ghm7v4cpi8qkz0b3xbq6yy4r3fqjlqly16rsvznnpcr"; depends=[cmprsk data_table etm MASS Matrix numDeriv plyr survival]; }; EpiBayes = derive2 { name="EpiBayes"; version="0.1.2"; sha256="1qfir0dl085c9ib1acsygmj7gihc4ar98k5niqdsgnmji88h17y2"; depends=[coda epiR scales shape]; }; - EpiContactTrace = derive2 { name="EpiContactTrace"; version="0.9.1"; sha256="10yd24xcydn03rq9kcqcxj5gn25v54ljsm9mgc206g9wf1xx0wjf"; depends=[]; }; + EpiContactTrace = derive2 { name="EpiContactTrace"; version="0.10.0"; sha256="0x0ah55nx68mq05hpp29g9h21is3kx9d84r82j4x4asyqjv92s7v"; depends=[]; }; EpiDynamics = derive2 { name="EpiDynamics"; version="0.3.0"; sha256="0hpysjl8wfgylbp4ddxmi5msvlp1w70c6pxggc2bwdgap3s127f3"; depends=[deSolve ggplot2 reshape2]; }; EpiEstim = derive2 { name="EpiEstim"; version="1.1-2"; sha256="0r56iglhkrqvlsf3gbahd544h944fmbyn6jdc113rhjscf6dl605"; depends=[]; }; - EpiModel = derive2 { name="EpiModel"; version="1.2.5"; sha256="1wydqifaw4kh6lfhapiar2xv2r1bcccb6j6kcmd5cppr2hsl2agc"; depends=[ape deSolve doParallel ergm foreach network networkDynamic RColorBrewer tergm]; }; + EpiModel = derive2 { name="EpiModel"; version="1.2.8"; sha256="1h4mspa7yi2z7rj98nzs3ay2m7gccv7bp63p9sjnqp08pdwk3x5y"; depends=[ape deSolve doParallel ergm foreach lazyeval network networkDynamic RColorBrewer tergm]; }; + EpiWeek = derive2 { name="EpiWeek"; version="1.1"; sha256="19bvjiiz8qn9nlvf3nq238qi1hszlm6asrc03p8ykp6gpl2pi6js"; depends=[]; }; Eplot = derive2 { name="Eplot"; version="1.0"; sha256="1glmkjjj432z9g4gi56pgvfrm5w86iplirnd5hm4s99qci2hgc64"; depends=[]; }; EstCRM = derive2 { name="EstCRM"; version="1.4"; sha256="1p99hmmyiy3havj72jd4xksr1j9gfmy0i7z7f3vqs5sqp72alq1k"; depends=[Hmisc lattice]; }; EstHer = derive2 { name="EstHer"; version="1.0"; sha256="1j8sczwfzil16j85mw5d1c7cxy7wimh0qq7zhmkh7mfnr36m9phr"; depends=[glmnet MASS Rcpp RcppArmadillo]; }; @@ -681,31 +858,33 @@ in with self; { EurosarcBayes = derive2 { name="EurosarcBayes"; version="1.0"; sha256="08m7igh6n8haf8yi8ikrz6ih4agvsnx415kdx4cgjw4xilvgpgqm"; depends=[clinfun data_table plyr shiny VGAM]; }; EvCombR = derive2 { name="EvCombR"; version="0.1-2"; sha256="1f5idjaza91npf64hvcnpgnr72mpb7y6kf91dp57xy9m14k7jx5g"; depends=[]; }; EvalEst = derive2 { name="EvalEst"; version="2015.4-2"; sha256="1jkis39iz3zvi5yfd0arvw7bym6naq45f5cravywg8c37n9v967x"; depends=[dse setRNG tfplot tframe]; }; - Evapotranspiration = derive2 { name="Evapotranspiration"; version="1.8"; sha256="135lsn8d5zwk7fljj9ccw7c0bnkddwdfdbjj8af21z5hnm3kl2lx"; depends=[zoo]; }; + EvaluationMeasures = derive2 { name="EvaluationMeasures"; version="1.1.0"; sha256="0b65y4rb650hhlgc18z0sm0danrrawqkazzdl9krl877djrgx87g"; depends=[]; }; + Evapotranspiration = derive2 { name="Evapotranspiration"; version="1.10"; sha256="0v8jjbmr9qqbn2k6jb7jcqmib89x2g7r8wkipxhb4bck0b0z5c0r"; depends=[zoo]; }; EvoRAG = derive2 { name="EvoRAG"; version="2.0"; sha256="0gb269mpl2hbx1cqakv3qicpyrlfb4k8a3a7whhg90masbgmh8f6"; depends=[]; }; Evomorph = derive2 { name="Evomorph"; version="0.9"; sha256="1br2fyggwz2mxpic8sk384xq1lpbpv0j5gf6xyzhkn2n7kfpf6d5"; depends=[geomorph ggplot2 reshape2 stringr]; }; ExPosition = derive2 { name="ExPosition"; version="2.8.19"; sha256="04s9kk8x6khvnryg6lqdwnyn79860dzrjk8a9jyxgzp94rgalnnz"; depends=[prettyGraphs]; }; - Exact = derive2 { name="Exact"; version="1.6"; sha256="0d5g5p98yrcd6v56iadsq448hl522shdqln2icmc3yfnya326as7"; depends=[]; }; + Exact = derive2 { name="Exact"; version="1.7"; sha256="0d0h406w2l99gxq6pmh9crxxrvdidcajk7bqzmifl7nfb77vp1av"; depends=[]; }; ExactCIdiff = derive2 { name="ExactCIdiff"; version="1.3"; sha256="1vayq8x7gk1fnr1jrlscg6rb58wncriybw4m1z0glfgzr259103y"; depends=[]; }; ExactPath = derive2 { name="ExactPath"; version="1.0"; sha256="0ngvalmgdswf73q0jr4psg0ihnb7qwkamm6h64l01k5rmgd5nm16"; depends=[lars ncvreg]; }; ExceedanceTools = derive2 { name="ExceedanceTools"; version="1.2.2"; sha256="084sc6pggfbcyavhfnd5whyigw7dyjhb4cxmxi0kh2jiam5k8v5b"; depends=[SpatialTools splancs]; }; - ExomeDepth = derive2 { name="ExomeDepth"; version="1.1.8"; sha256="1vg5lqbk30gm3dq0hn6nihzxa7a1jqnfvm18r2w8dckc576ns6hf"; depends=[aod Biostrings GenomicAlignments GenomicRanges IRanges Rsamtools VGAM]; }; + ExomeDepth = derive2 { name="ExomeDepth"; version="1.1.10"; sha256="11lg1n9wls96cg1byj5bfircw4bsf0rbk37h8fl0hkh29m6gyy16"; depends=[aod Biostrings GenomicAlignments GenomicRanges IRanges Rsamtools VGAM]; }; + ExpDE = derive2 { name="ExpDE"; version="0.1.2"; sha256="0q95d5gklg834f02b2p252jb3kbbjr4sj3wdak9ljibscnnlckml"; depends=[]; }; ExpDes = derive2 { name="ExpDes"; version="1.1.2"; sha256="0qfigbx06b3p04x5v7wban139mp8hg8x77x6nzwa4v6dr226qbkv"; depends=[]; }; ExpDes_pt = derive2 { name="ExpDes.pt"; version="1.1.2"; sha256="0khw2jhg2vxcivgr20ybvrsqhd8l8bir5xjmr4m44za9nhap43bz"; depends=[]; }; - ExplainPrediction = derive2 { name="ExplainPrediction"; version="1.0.2"; sha256="00hw95k64p7zwb9a9n89cyghb8l6rrh33xlciw6g2q1dcmdfxzqg"; depends=[CORElearn semiArtificial]; }; + ExplainPrediction = derive2 { name="ExplainPrediction"; version="1.1.4"; sha256="1n608qz2mj1x36kmbyi7lp0zp744bf9k1zq15yhdv8yy7pcdfl0d"; depends=[CORElearn semiArtificial]; }; ExtDist = derive2 { name="ExtDist"; version="0.6-3"; sha256="1vsxm578bb70wnz3mxm7y1n5vs0x5pby99hvxg5y5ksh2g2ascwa"; depends=[numDeriv optimx]; }; - ExtremeBounds = derive2 { name="ExtremeBounds"; version="0.1.5.1"; sha256="0b67bap1ks3wq3m6wgr7splpn7wq635wslcks74xqzv0man4kh84"; depends=[Formula]; }; + ExtremeBounds = derive2 { name="ExtremeBounds"; version="0.1.5.2"; sha256="010k2ddrrmrv4ayr009sm0vdgql5n1hy2b7rxyggj8iqsm8lkxim"; depends=[Formula]; }; FACTMLE = derive2 { name="FACTMLE"; version="1.1"; sha256="0qz2i0hnn84bpps1h8jmfkgp5p59axr0wayj9dvl839radrvpqvy"; depends=[rARPACK]; }; FACTscorer = derive2 { name="FACTscorer"; version="0.1.0"; sha256="1gbfpm5szi6w8iyp7ywpqrmdq0wrv5axj29sj9gxjwmjfh5qgqjx"; depends=[]; }; - FADA = derive2 { name="FADA"; version="1.2"; sha256="1wpjqvhhgvirzcvl8r23iaw63wr8rys19mjy71mn24wg3zwnc2qz"; depends=[crossval elasticnet glmnet MASS mnormt sda sparseLDA]; }; + FADA = derive2 { name="FADA"; version="1.3.2"; sha256="0093j4sgm1fv9bz9h9ldgaac0ggxwwk2qk46c7vxfh9zkmlm6zmb"; depends=[corpcor crossval elasticnet glmnet MASS matrixStats mnormt sda sparseLDA]; }; FAMILY = derive2 { name="FAMILY"; version="0.1.19"; sha256="1912l2zj2cmh8yx8lkg8fpgvfddn6wbi1vrr4yx04mh73gk1s5mk"; depends=[pheatmap pROC]; }; FAMT = derive2 { name="FAMT"; version="2.5"; sha256="0mn85yy9zmiklfwqjbhbhzbawwp2yqrm9pvm8jhasn9c3kw1pcp2"; depends=[impute mnormt]; }; FAOSTAT = derive2 { name="FAOSTAT"; version="2.0"; sha256="06z8c964sf73ld4v9vybqjsdxskxp3ssyv0a3mpcs9la5y7n9jaz"; depends=[classInt data_table ggplot2 labeling MASS plyr RJSONIO scales]; }; FAdist = derive2 { name="FAdist"; version="2.2"; sha256="0nw3w4g7y846bm57xyjnb13g7z746kxf8mb2hnljwwsypcg6i2n8"; depends=[]; }; FAiR = derive2 { name="FAiR"; version="0.4-15"; sha256="18nj95fiy3j7kf4nzf692dxja3msnaaj5csg745bnajb48l606wz"; depends=[gWidgetsRGtk2 Matrix rgenoud rrcov]; }; FAmle = derive2 { name="FAmle"; version="1.3.4"; sha256="0di9mmpsll7339cw1lss3jk4w1cyqhap6y72r793q8w3x14q0j9d"; depends=[mvtnorm]; }; - FAwR = derive2 { name="FAwR"; version="1.1.0"; sha256="0566h9fgnnk8xankqkpvcshf8acr46lz84sf2pzlmasgvwh7xp19"; depends=[glpkAPI lattice MASS]; }; - FBFsearch = derive2 { name="FBFsearch"; version="1.0"; sha256="1nxfhll9gx9l6hzpcihlz880qxr0fyv5rjghk0xgp8xn4r5wxw11"; depends=[Rcpp RcppArmadillo]; }; + FAwR = derive2 { name="FAwR"; version="1.1.1"; sha256="1hzgaxinq81v4f9743lnlj3bkby8pwmaw1gq0fb4yxazav8y7ihy"; depends=[glpkAPI lattice MASS]; }; + FBFsearch = derive2 { name="FBFsearch"; version="1.1"; sha256="17fi501prnwwy5dh7kv7cx2zlz2dknjj542ga024s7jvg7i2rhg0"; depends=[Rcpp RcppArmadillo]; }; FBN = derive2 { name="FBN"; version="1.5.1"; sha256="0723krsddfi4cy2i3vd6pi483qjxniychnsi9r8nw7dm052nb4sf"; depends=[]; }; FCGR = derive2 { name="FCGR"; version="1.0-0"; sha256="015nnnc9fasx0qjrc3lbxv14rqwyx36xzsw9076grwm5pqahrdsb"; depends=[kerdiest KernSmooth MASS mgcv nlme pspline sfsmisc]; }; FCMapper = derive2 { name="FCMapper"; version="1.1"; sha256="1yjh8rs65nqslvwv7x4rif469zds41s7v3vhq6pca1y17kvj2in1"; depends=[igraph]; }; @@ -714,9 +893,10 @@ in with self; { FDGcopulas = derive2 { name="FDGcopulas"; version="1.0"; sha256="1i86ns4hq74y0gnxfschshjlc6if3js0disjb4bwfizaclwbw3as"; depends=[numDeriv randtoolbox Rcpp]; }; FDRreg = derive2 { name="FDRreg"; version="0.1"; sha256="17hppvyncbmyqpi7sin9qsrgffrnx8xjcla2ra6y0sqzam1145y4"; depends=[fda mosaic Rcpp RcppArmadillo]; }; FDRsampsize = derive2 { name="FDRsampsize"; version="1.0"; sha256="0g8kawzyi9x5yndvh330wzqw6rvcnprwq56ngd0j6z51hvvw8qhw"; depends=[]; }; - FDboost = derive2 { name="FDboost"; version="0.1-0"; sha256="01khx996wx0jk14dgzwy9ma38sdzxmspiw31rcqd6c26nzddsycs"; depends=[gamboostLSS MASS Matrix mboost mgcv refund zoo]; }; + FDboost = derive2 { name="FDboost"; version="0.2-0"; sha256="10rpi132d16cjr3c08p1py8jjxgf0gk812vi3918sr71m5x0m64i"; depends=[gamboostLSS MASS Matrix mboost mgcv refund stabs zoo]; }; FENmlm = derive2 { name="FENmlm"; version="1.0"; sha256="0mq1qa72hsz3pyqjnbyzcc7shr08cq3hng1fz53mn9mvp11vb135"; depends=[MASS Matrix numDeriv]; }; FFD = derive2 { name="FFD"; version="1.0-6"; sha256="19yqb45qj54fmjkqfjbcqsx3wz6fk8inrqif9ds93xjkm6aaiqgp"; depends=[R2HTML tkrplot]; }; + FFTrees = derive2 { name="FFTrees"; version="1.1.8"; sha256="0zslr3k3wjvin14i7y2qfc5acf864kp9ih52bq0sb34590papy18"; depends=[circlize MASS rpart]; }; FField = derive2 { name="FField"; version="0.1.0"; sha256="05q16v2vv64qhbnf2l66dwzmvgzyaq8vxwwdabp534bw7z7zpi8q"; depends=[]; }; FGN = derive2 { name="FGN"; version="2.0-12"; sha256="0jxawb4wm1vcp0131mdnc0r24dw8sd29ih0fc2wh6ahy7mxzajqn"; depends=[akima ltsa]; }; FGSG = derive2 { name="FGSG"; version="1.0.2"; sha256="1r3sjhzf9gcnbcx6rqr1s555z8lcwm3fxl096md2jji336ijlk79"; depends=[]; }; @@ -724,97 +904,116 @@ in with self; { FHtest = derive2 { name="FHtest"; version="1.3"; sha256="1cay1cl1x4lias55vxc14caznggdw6j8vgqgkxfmvldnvjfljsq1"; depends=[interval KMsurv MASS perm survival]; }; FI = derive2 { name="FI"; version="1.0"; sha256="17qzl8qvxklpqrzsmvw4wq3lyqz3zkidr7ihxc4vdzmmz69pyh2f"; depends=[]; }; FIACH = derive2 { name="FIACH"; version="0.1.2"; sha256="151lc5m8pb7l07kxljm32zy5kd7a4zr5vgsgwsx7ywhijh0r0585"; depends=[Rcpp RcppArmadillo RNiftyReg tkrplot]; }; - FITSio = derive2 { name="FITSio"; version="2.0-0"; sha256="1gf3i1q9g81gydag2gj1wsy6wi5jj2v4j3lyrnh1n2g4kxd6s3cp"; depends=[]; }; + FIT = derive2 { name="FIT"; version="0.0.4"; sha256="150lwqxzznmga5dbrxi12pjva7pvc7nsahs8w5wvibkasndxwxj9"; depends=[gglasso MASS Rcpp RcppEigen XML]; }; + FITSio = derive2 { name="FITSio"; version="2.1-0"; sha256="021xmbavigg70m96xw1bvsdasi5yj2wmafgb6xw4b09fmyv9hvjp"; depends=[]; }; FKF = derive2 { name="FKF"; version="0.1.3"; sha256="01ibihca39zng4wrvhq8h28bmb2rnsjm21xy22b85kpn3mbnh7f1"; depends=[RUnit]; }; FLIM = derive2 { name="FLIM"; version="1.2"; sha256="180az4zwmfcglmvismyacmh7ri4qg8jvhlisqpway0z5z6fsda6r"; depends=[MASS zoo]; }; FLLat = derive2 { name="FLLat"; version="1.2"; sha256="0kdc269vsc94pi00n55196a20qiv6c5pxf2xrh34w4x2vkn5mbxz"; depends=[gplots]; }; FLR = derive2 { name="FLR"; version="1.0"; sha256="0k50vi73qj7sjps0s6b2hq1cmpa4qr2vwkpd2wv2w1hhhrj8lm0n"; depends=[combinat]; }; - FLSSS = derive2 { name="FLSSS"; version="3.1"; sha256="0cyrjq1b0s7x0dz3x2kvd7pr8v4lyw1324ik4rnbj9hv9mf1g0af"; depends=[Rcpp]; }; - FME = derive2 { name="FME"; version="1.3.2"; sha256="1sjnsc8jbylb2bln5ic24s5bany3clzn44lqnymhsy81x88396ff"; depends=[coda deSolve MASS minpack_lm rootSolve]; }; + FLSSS = derive2 { name="FLSSS"; version="5.2"; sha256="1px9n0rnjg32ngy8bs0z1jzmspnkn15q273w74vxjykqfd5xayfd"; depends=[Rcpp RcppParallel]; }; + FLightR = derive2 { name="FLightR"; version="0.4.5"; sha256="0kyvnqjdr82x82l3isqw4kr31x0a15nzgmlggxbv9rjk3pxjnfbx"; depends=[bit CircStats circular fields GeoLight ggmap ggplot2 ggsn maptools mgcv nlme raster RcppArmadillo rgdal rgeos sp truncnorm]; }; + FME = derive2 { name="FME"; version="1.3.5"; sha256="1r1mb61hylsgcryac35bz1pzfcw27gzpvfwkkf0sh754ya6xh69n"; depends=[coda deSolve MASS minpack_lm minqa rootSolve]; }; FMP = derive2 { name="FMP"; version="1.4"; sha256="0w11a78nz4n7zih9h00xkv7prsy9hlxphbpa7hpnbvq9r98g08qm"; depends=[]; }; FMStable = derive2 { name="FMStable"; version="0.1-2"; sha256="00viigpqfbqc4hyl9cwicbwqf2ksjak28qrqaa16jhbqz93j4fck"; depends=[]; }; + FMsmsnReg = derive2 { name="FMsmsnReg"; version="1.0"; sha256="0d58n7lz8d6xgzvyznmhw1byshyiiwk8dc462qr18cl51p0lqnkv"; depends=[mvtnorm]; }; FNN = derive2 { name="FNN"; version="1.1"; sha256="1kncmiaraq1mrykb9fj3fsxswabk3l71fnp1vks0x9aay5xfk8mj"; depends=[]; }; - FPDclustering = derive2 { name="FPDclustering"; version="1.0"; sha256="078vvpn9lwza45l9k53m3yzhrkkyakm1ynm93x5yld4fgkrd3c33"; depends=[ThreeWay]; }; + FPCA2D = derive2 { name="FPCA2D"; version="1.0"; sha256="18bb90ppd9gd8pg9jxfyfkmlsaqk8w25fgaj9fk18ybm2nhsxqm6"; depends=[corpcor]; }; + FPDclustering = derive2 { name="FPDclustering"; version="1.1"; sha256="1zbf8y3b3scigqp7yiw0hq36lq6fzzvns331jxg5v62f4aj0g496"; depends=[ThreeWay]; }; FRACTION = derive2 { name="FRACTION"; version="1.0"; sha256="0g25dzsbharsq8bzfka96zccaqppdclax24mz5m080ddg4y8zj49"; depends=[]; }; - FRAPO = derive2 { name="FRAPO"; version="0.3-8"; sha256="1wqayyai8pdm1vq6qvpd10qpd882cyjb0y0jl582fxd3a2ic7n14"; depends=[quadprog Rglpk timeSeries]; }; + FRAPO = derive2 { name="FRAPO"; version="0.4-1"; sha256="0mjcrplxr0cyybp5hzzwbq5j03w0f3iiiv1yk7mdqr5gb368dchq"; depends=[cccp Rglpk timeSeries]; }; FRB = derive2 { name="FRB"; version="1.8"; sha256="13rp4gqldx84mngrdv5fa9xamkng7b3kgy30ywykcx46gmrym6ps"; depends=[corpcor rrcov]; }; FRCC = derive2 { name="FRCC"; version="1.0"; sha256="1g1rsdqsvwf7wc16dj16y6r0347j8jsv5l1pxvj1h0579zinaf2b"; depends=[calibrate CCP corpcor MASS]; }; - FREGAT = derive2 { name="FREGAT"; version="1.0"; sha256="0fq431iclhp2jjfm3330sw0b73sl9bmzq35sa5nfyk19cg2s18z8"; depends=[Matrix]; }; + FREGAT = derive2 { name="FREGAT"; version="1.0.2"; sha256="0axl2rgsq8n2p7c89gks3ipbgs2qpapypjdb1d1vb1ffph08fiik"; depends=[Matrix]; }; FREQ = derive2 { name="FREQ"; version="1.0"; sha256="01nra30pbnqdd63pa87lcws3hnhhzybcjvx2jqyxjghn6khz47j0"; depends=[]; }; - FRESA_CAD = derive2 { name="FRESA.CAD"; version="2.2.0"; sha256="18hgdxwfk59rd2pbkr0pxjb0d27x81sw7vwky66hvcdzywkdcia8"; depends=[Hmisc miscTools pROC Rcpp RcppArmadillo stringr]; }; - FSA = derive2 { name="FSA"; version="0.8.5"; sha256="1hnaq11i72zyq7v3d35v8m8ir59l5hmdws586c4dd8qykbzkqdlr"; depends=[car dplyr gdata gplots Hmisc plotrix plyr sciplot]; }; - FSAdata = derive2 { name="FSAdata"; version="0.3.2"; sha256="1g682bj7xiaqcs6ax8jyg02lvx5c1qk0v6a6w0ma3f0qyk6ga7aq"; depends=[]; }; + FRESA_CAD = derive2 { name="FRESA.CAD"; version="2.2.1"; sha256="065iywjay4a06w97lg2z98qq0j60flq4srchyg7c2a3pjrwppqc2"; depends=[Hmisc miscTools pROC Rcpp RcppArmadillo stringr]; }; + FREddyPro = derive2 { name="FREddyPro"; version="1.0"; sha256="0h2rdydcx9pwjl1zxghzb5vqynrwdkscyq6c9adjgz4dngfwyzsw"; depends=[dismo ggplot2 lubridate raster RColorBrewer sp]; }; + FSA = derive2 { name="FSA"; version="0.8.11"; sha256="0pwqdw7kq2fkxqwwazjcx3g9y6cwrkanfv2j58q2hhjzrhyp08qs"; depends=[car dplyr epitools gplots plotrix plyr sciplot]; }; + FSAdata = derive2 { name="FSAdata"; version="0.3.5"; sha256="0cj4pvhb52zpxi5r3ffkpmwf420waw5kczfw9p9jv6d5byhi6jd5"; depends=[]; }; FSInteract = derive2 { name="FSInteract"; version="0.1.1"; sha256="0hlmz0sc4l9vmb4b2y3j95gh39m1jqrp9bvqsjjqdr0ly1lb7mvm"; depends=[Matrix Rcpp]; }; - FSelector = derive2 { name="FSelector"; version="0.20"; sha256="0gbnm48x5myhxxw8gz7ck9sl41nj5rxq4gwifqk3l4kiqphywlpi"; depends=[digest entropy randomForest RWeka]; }; + FSelector = derive2 { name="FSelector"; version="0.21"; sha256="0qk54b4svihwcmfdp5k8pcvy60568zlg4z2qqiawr7h4inzmvrlk"; depends=[digest entropy randomForest RWeka]; }; FTICRMS = derive2 { name="FTICRMS"; version="0.8"; sha256="0kv02mdmwflhqdrkhzb55si5qnqqgdadgyabqc2hwr6iccn7aq8c"; depends=[lattice Matrix]; }; + FTRLProximal = derive2 { name="FTRLProximal"; version="0.3.0"; sha256="0wnlswvxiw7gvmn9yq1v8jixwspfbvcg3rklqcd0ib38d72ww7w0"; depends=[Matrix]; }; + FUNTA = derive2 { name="FUNTA"; version="0.1.0"; sha256="02yxz95s2hs26mfmgwhv5d54yyjz0aczjpnay8b4gpzbpd6aci61"; depends=[]; }; FWDselect = derive2 { name="FWDselect"; version="2.1.0"; sha256="0w0hkmhcz7h1lixk7p3yffbbalgxwh2lv463vqz361k80sri6wz7"; depends=[cvTools mgcv]; }; FacPad = derive2 { name="FacPad"; version="3.0"; sha256="0h7knzin0rfk25li127zwjsyz223w7nx959cs328p6b2azhgn59b"; depends=[MASS Rlab]; }; FactMixtAnalysis = derive2 { name="FactMixtAnalysis"; version="1.0"; sha256="1l4wfp39b7g38vdk6jpd5zq08sjhsg0s71f662aca2rj6l3a2x3r"; depends=[MASS mvtnorm]; }; - FactoClass = derive2 { name="FactoClass"; version="1.1.2"; sha256="0wg8n2vn586dj5g6js6c7rshsjibciyvg2j53mxgnn0f63xdb3ip"; depends=[ade4 xtable]; }; - FactoMineR = derive2 { name="FactoMineR"; version="1.32"; sha256="1b7v350l2c3swlpqjsc9gh4aiahzqm8kkk9nhc8y4s591xn1rqdv"; depends=[car cluster data_table dplyr ellipse flashClust knitr lattice leaps MASS scatterplot3d]; }; - Factoshiny = derive2 { name="Factoshiny"; version="1.0.2"; sha256="0wwsv0frn2d6a5l5lr9qzqglznaigc23bq7nhcbfy1wlvsmimnr3"; depends=[FactoMineR shiny]; }; - Fahrmeir = derive2 { name="Fahrmeir"; version="2015.6.25"; sha256="1ca4m3m4jip7n489yywdfvh6nlhxspg5awxi23spgfnvhrcs9k3y"; depends=[]; }; - FamEvent = derive2 { name="FamEvent"; version="1.1"; sha256="1z4dvsj0c07il6gj0nhdhy1ss07c0zbraf0gg0hz288k3j756c2v"; depends=[kinship2 MASS survival truncnorm]; }; + FactoClass = derive2 { name="FactoClass"; version="1.1.3"; sha256="1vwjxzz8cdvshslx51vnvgybvmki2x3zfax2q6czxl8kacijdh9n"; depends=[ade4 xtable]; }; + FactoMineR = derive2 { name="FactoMineR"; version="1.35"; sha256="1a8mnyjh3915h3n46p6pph7nv9chxj02pjsyjv2ic78xavz7dqdg"; depends=[car cluster ellipse flashClust knitr lattice leaps MASS scatterplot3d]; }; + FactoRizationMachines = derive2 { name="FactoRizationMachines"; version="0.1"; sha256="0iycm1ih0947b8qsm1p3x42g088pk3vvayb96irmj0cd2a0fix6c"; depends=[Matrix Rcpp]; }; + FactorsR = derive2 { name="FactorsR"; version="1.1"; sha256="06193gw4q9yvhmgzlv8w2xi9f418cjkn9jx72l41426wapjhygdy"; depends=[]; }; + Factoshiny = derive2 { name="Factoshiny"; version="1.0.5"; sha256="1jqk80raqf3kxympkqfayzwwc61yipzh4cbklrb9kmay5ryg4gj9"; depends=[colourpicker FactoMineR shiny]; }; + Fahrmeir = derive2 { name="Fahrmeir"; version="2016.5.31"; sha256="16fbc1zb9x9p04bl7y5nd375pha6bd3hfqqchlk1bqxrj4879y5g"; depends=[]; }; + FamEvent = derive2 { name="FamEvent"; version="1.2"; sha256="1z611g6nginmga2mzkjlplwmfiiply2wwnbn6icsn412wzj8a606"; depends=[kinship2 MASS survival truncnorm]; }; Familias = derive2 { name="Familias"; version="2.4"; sha256="1k6ig2zfkr1a4s3s85ygixmmsrb5m8vqqab8l5ffkspgjvh4dfz2"; depends=[kinship2 paramlink Rsolnp]; }; FastBandChol = derive2 { name="FastBandChol"; version="0.1.1"; sha256="1hlgipn792vaylvc0r44clkjcnkns6p241a1fs8sb3gpq81naazk"; depends=[Rcpp RcppArmadillo]; }; FastGP = derive2 { name="FastGP"; version="1.2"; sha256="120qai1yw3yhwm762zridk78n4qclpivwm9f2hkij4bz851qibqv"; depends=[MASS mvtnorm rbenchmark Rcpp RcppEigen]; }; FastHCS = derive2 { name="FastHCS"; version="0.0.5"; sha256="02ds9syqh8wpjrqibdv3kqxcyijclm572daqrj262b4b6211v46x"; depends=[matrixStats Rcpp RcppEigen robustbase]; }; - FastImputation = derive2 { name="FastImputation"; version="1.3"; sha256="1x4qai8dycq5pk0q0s34yig30fxxw6vxw3cp87w361640ix95iqk"; depends=[]; }; + FastImputation = derive2 { name="FastImputation"; version="1.3.1"; sha256="05rs5mzb7aww7x06zqn4q053jqxbrc185ra11brm0xkb02cc1dih"; depends=[]; }; FastKM = derive2 { name="FastKM"; version="1.0"; sha256="0sqxd2pg9y6yn1lnxni32ca3bgbmz04k9z37q9pzgijvf9qvik3f"; depends=[rARPACK]; }; FastKNN = derive2 { name="FastKNN"; version="0.0.1"; sha256="1iz8ybzkvbyqwb00s7cp1zvy9xlmyjid441mf62dq08a0zncnyss"; depends=[assertthat pdist]; }; FastPCS = derive2 { name="FastPCS"; version="0.1.2"; sha256="1lqb6g65vna2p7kc2y4kc5piy3280nlxl41bdkxkng2icmq14l58"; depends=[matrixStats Rcpp RcppEigen]; }; FastRCS = derive2 { name="FastRCS"; version="0.0.7"; sha256="1pszpmb5qki4cchd1pc0j6s4sfflaikbfrbisf6c2j9p8ssxxfgk"; depends=[matrixStats Rcpp RcppEigen]; }; FastRWeb = derive2 { name="FastRWeb"; version="1.1-1"; sha256="0xh3710kvnc60pz9rl5m3ym2cxf0mag9gi29y7j3fl4dh2k7zf74"; depends=[base64enc Cairo]; }; - FatTailsR = derive2 { name="FatTailsR"; version="1.6-0"; sha256="0713cgnwail2z404pn0fnpkbiw1fgc1ndh2krd0if2vnd2ibzgih"; depends=[minpack_lm timeSeries]; }; + FatTailsR = derive2 { name="FatTailsR"; version="1.7-0"; sha256="0mywkrq929a0v20a1zaa9zc5l9k2kw5y1zz458iff3i56pzrcrsj"; depends=[minpack_lm timeSeries]; }; FeaLect = derive2 { name="FeaLect"; version="1.10"; sha256="1r7rgcadrqjhxn2g2w16axygsck82fprxg7l14ai11bn4b7h4pmb"; depends=[lars rms]; }; FeatureHashing = derive2 { name="FeatureHashing"; version="0.9.1.1"; sha256="1y46bk2yddq0n8p1kj6fwi9q23lsblsrlgf7b630vcbvv8mpz5x2"; depends=[BH digest magrittr Matrix Rcpp]; }; - FedData = derive2 { name="FedData"; version="2.0.8"; sha256="14g9hqb6jwk3m9zyf05rzzbqfxzphb4vymjq6bz2j2ra598p7wyg"; depends=[curl data_table devtools Hmisc igraph raster rgdal soilDB sp]; }; - FeedbackTS = derive2 { name="FeedbackTS"; version="1.3.1"; sha256="1zx64wbl5pzqn69bjhshd3nayxx4wlg7n1zwv7ilh68raxfxnbbx"; depends=[geoR mapdata maps proj4 sp]; }; - Fgmutils = derive2 { name="Fgmutils"; version="0.4"; sha256="0cg2vivshwcqyzlahsirh9jax4nr8alwz7gf4qxcdmxvzjaln6lq"; depends=[data_table devEMF plyr png sqldf stringr]; }; + FedData = derive2 { name="FedData"; version="2.4.0"; sha256="1rai3hgx10q6jcjpqd0jsqvp15am3i48n1ph6dl88mhwgiblvh9w"; depends=[curl data_table devtools doParallel dplyr foreach Hmisc igraph lubridate magrittr ncdf4 raster readr rgdal rgeos soilDB sp]; }; + FeedbackTS = derive2 { name="FeedbackTS"; version="1.4"; sha256="1mcsr48hvrpfnk2f0z1bc8556jf848bpd8prm3y46gqdj452wpmm"; depends=[geoR mapdata maps proj4 sp]; }; + Fgmutils = derive2 { name="Fgmutils"; version="0.9.4"; sha256="0k5pafgrcb7smklgzgw2mf6npj55nm5fsr6k0xp6ji380rvdxc0y"; depends=[data_table devEMF ggplot2 gridExtra plyr png ReporteRs sqldf stringr]; }; FieldSim = derive2 { name="FieldSim"; version="3.2.1"; sha256="1snz2wja3lsgxys0mdlrjjvk5575cyd64mjipafibwcs97bva5x1"; depends=[RColorBrewer rgl]; }; + FinAna = derive2 { name="FinAna"; version="0.1.1"; sha256="092jw6y06r48dph4h0dnsv96bjh8knx91lrdlchb3q43dzfdz4i1"; depends=[]; }; FinAsym = derive2 { name="FinAsym"; version="1.0"; sha256="0v15ydz4sq9djwcdcfp90mk8l951rry7h91d7asgg53mddbxjj6f"; depends=[]; }; - FinCal = derive2 { name="FinCal"; version="0.6.2"; sha256="0hfmbg4ha6vr80nl1772cahjzqicak038d6dg6784fs2rqvzjhw2"; depends=[ggplot2 RCurl reshape2]; }; - FinCovRegularization = derive2 { name="FinCovRegularization"; version="1.0.0"; sha256="0da7asm4mvbd4wvqll5gdvckb10ccfx7gy141xbxyaixdhgi6zl4"; depends=[quadprog]; }; + FinCal = derive2 { name="FinCal"; version="0.6.3"; sha256="1clvnvhpf2krrf8flhmdxmys6ym3xw3v4v07kk1if4xb0dfk9wgy"; depends=[ggplot2 RCurl reshape2]; }; + FinCovRegularization = derive2 { name="FinCovRegularization"; version="1.1.0"; sha256="0h3i46s0rpqvgnqgjwqrlrfa3vv5jn2hm6bqc0ijwmrr9f80g4ir"; depends=[quadprog]; }; FinTS = derive2 { name="FinTS"; version="0.4-5"; sha256="16m57h6rk4344aalfwaz7hsyis30c1dirsyx8ih661ihgqn1ai1r"; depends=[zoo]; }; FinancialInstrument = derive2 { name="FinancialInstrument"; version="1.2.0"; sha256="0lx8gqmnapyizlg0qdcjy8xrkpbhj0f7nc95l86a6xy82hz62dzb"; depends=[quantmod TTR xts zoo]; }; + FinancialMath = derive2 { name="FinancialMath"; version="0.1.1"; sha256="11nhphvd7bvbc7xfs85rib763r1mpvxmsj6hgzfib5aifib5k5js"; depends=[]; }; FindAllRoots = derive2 { name="FindAllRoots"; version="1.0"; sha256="0n4wfm21qj5zn06jqnzxa0w9mfn18dqi6hk1jjqa56dxqw1k7vw0"; depends=[]; }; - FindIt = derive2 { name="FindIt"; version="0.5"; sha256="0bj4al4b7na3w5y783nqyd2wc1pmwfmgf2p4q6n7vqbzqghy0a3q"; depends=[glmnet lars Matrix]; }; + FindIt = derive2 { name="FindIt"; version="1.0"; sha256="00psd20j84vdjw2jyilkfb2z9kfs5c139rky8d8rpl8sz97szpf2"; depends=[arm ggplot2 glmnet lars Matrix quadprog]; }; FindMinIC = derive2 { name="FindMinIC"; version="1.6"; sha256="0vlr56nw32msvz8bljrw82nzrnazncs6nz7zisidffm2v3najkar"; depends=[nlme sets]; }; + FinePop = derive2 { name="FinePop"; version="1.3.0"; sha256="1ax07zcrgmbgpxcs8dyg91pnvqfix97vdiyy9zpc767q2286gpxq"; depends=[]; }; FisHiCal = derive2 { name="FisHiCal"; version="1.1"; sha256="1dds629jlja3vw2l010n1334yh3z10nijqksr0q98ckd2yrwg2rf"; depends=[igraph Rcpp RcppArmadillo]; }; FisherEM = derive2 { name="FisherEM"; version="1.4"; sha256="1lhkyyk82i6alxyiqrvy5fx60f8vab0y62zmw5fjaq6h0vczqn3s"; depends=[elasticnet MASS]; }; FitAR = derive2 { name="FitAR"; version="1.94"; sha256="1mkk3kvfq4v0pdabnhbwrk31ji2mv2v6ns16xsvvr1qyg2fnx6hq"; depends=[bestglm lattice leaps ltsa]; }; FitARMA = derive2 { name="FitARMA"; version="1.6"; sha256="1r9mqrqkm4wh3nd6v9wmpj23gw21i4p89p6z4c7639kn4f590ldk"; depends=[FitAR]; }; + FixSeqMTP = derive2 { name="FixSeqMTP"; version="0.1.2"; sha256="0v1cwq8gapgandm7wiw8p6av6qigydlpmwi6w02p1y7f0hf5ifnp"; depends=[]; }; FlexParamCurve = derive2 { name="FlexParamCurve"; version="1.5-3"; sha256="0766ghwbdd7r4yj5xf31hnknn775ziw1hhrn13wf8bibyd8blz70"; depends=[nlme]; }; - FlowScreen = derive2 { name="FlowScreen"; version="0.9"; sha256="165zhlnirkmmnmxq9wcikz1ray6fswlv3nba14vr9q8ba9z359wv"; depends=[changepoint evir zyp]; }; + FlowScreen = derive2 { name="FlowScreen"; version="1.2.1"; sha256="0wdlw8wz10jb0ablfkpjmhkz31h7c19blpzifg1kknknvg8wmbkd"; depends=[changepoint evir zyp]; }; Flury = derive2 { name="Flury"; version="0.1-3"; sha256="105fv9azjkd8bsb9b8ba3gpy3pjnyyyp753qhrd11byp3d0bbxy0"; depends=[]; }; ForIT = derive2 { name="ForIT"; version="1.0"; sha256="0mi2cw09mbc54s8qwcwxin2na1gfyi60cdssy2ncynma7alq3733"; depends=[]; }; ForImp = derive2 { name="ForImp"; version="1.0.3"; sha256="0ai4i6q233sdsi8xilpbkxjqdf4pxw93clkdkhcxal6q43rnf7vd"; depends=[homals mvtnorm sampling]; }; - ForeCA = derive2 { name="ForeCA"; version="0.2.2"; sha256="1iszhiqn0vg3l2c8cgshk8qir0dqml4jsl942hdsmjm6raxlb6n9"; depends=[ifultools MASS sapa]; }; + ForeCA = derive2 { name="ForeCA"; version="0.2.4"; sha256="1i19lmhl1kgfnd7zipjr6xp5ir9rvjy13sbq321jaf8ya60bjdd9"; depends=[ifultools MASS reshape2 sapa]; }; ForecastCombinations = derive2 { name="ForecastCombinations"; version="1.1"; sha256="07vzgm2jy992p1l9b8rsv2lbc8cbfzvql85n5ah4p4l3zjxdxgk9"; depends=[quadprog quantreg]; }; + ForestTools = derive2 { name="ForestTools"; version="0.1.0"; sha256="0jvsz96ll3apl4br5m8cbs24yds05xh93brvrib6yiwcss55avf1"; depends=[APfun imager maptools raster rgdal rgeos sp TileManager]; }; FormalSeries = derive2 { name="FormalSeries"; version="1.0"; sha256="09m4ifinasww0xfprs29xsrqhxxkw9zffb3919xnkkjkwp0nax4v"; depends=[]; }; Formula = derive2 { name="Formula"; version="1.2-1"; sha256="02in5325zzrqbhlygx6s0dinj6ymw845q70y56frqacv25ayzcax"; depends=[]; }; ForwardSearch = derive2 { name="ForwardSearch"; version="1.0"; sha256="0yd47832piqxzjxgl7bc8pn0c8f7vbgsm9z6894rzyi615kjl70b"; depends=[robustbase]; }; FourScores = derive2 { name="FourScores"; version="1.0"; sha256="0d21mrl9bzsvhljv7ymiyck508smp66w9qivrb2rp0p803h9yibm"; depends=[]; }; - FrF2 = derive2 { name="FrF2"; version="1.7-1"; sha256="0i9hfx7n0g866imdsmalqzs8v95vx08cz97hi8311v1wc3pqsn1j"; depends=[BsMD DoE_base igraph scatterplot3d sfsmisc]; }; + FrF2 = derive2 { name="FrF2"; version="1.7-2"; sha256="1qjgx7zbnabbs4zq7hn3j1i1xyy4yjwnz7pn25kz9s3szqr1fk66"; depends=[BsMD DoE_base igraph scatterplot3d sfsmisc]; }; FrF2_catlg128 = derive2 { name="FrF2.catlg128"; version="1.2-1"; sha256="0i4m5zb9dazpvmnp8wh3k51bm0vykh4gncnhdg71mfk4hzrfpdac"; depends=[FrF2]; }; FractalParameterEstimation = derive2 { name="FractalParameterEstimation"; version="1.0"; sha256="12v72zn1san2kv82b9y1vd0gzd1fa800yscc63zlq8lfflz47xvz"; depends=[]; }; - Fragman = derive2 { name="Fragman"; version="1.0.3"; sha256="0ar6nikfqcgv95xr0kbdwyiwc66a6rgrnnybhpk0fcrpkkjvzkm9"; depends=[]; }; + Fragman = derive2 { name="Fragman"; version="1.0.7"; sha256="0dh1gk2arj7r6zd5dhkmxpr7a1hd3pl8x5klmlsg4n6rwsx2p4v8"; depends=[]; }; Frames2 = derive2 { name="Frames2"; version="0.2.1"; sha256="0xbz19v5r1h15p8mf94vacw04h3kvmm88ayy4b1aqxrd925n63mw"; depends=[MASS nnet sampling]; }; - FreeSortR = derive2 { name="FreeSortR"; version="1.1"; sha256="03z5wmr88gr6raa2cg7w4j6y5vgxr3g8b8axzhbd7jipswr5x1jf"; depends=[ellipse smacof vegan]; }; + FreeSortR = derive2 { name="FreeSortR"; version="1.2"; sha256="01h29p9qhlkd2qmmmw23wh9lrsggvp1h3r2laqi2lln7d7srcwbj"; depends=[ellipse smacof vegan]; }; FreqProf = derive2 { name="FreqProf"; version="0.0.1"; sha256="1yqn2435l2sghfcv5mma0rv9yqvpa69z8cqqsjlrlbih9gib82d4"; depends=[ggplot2 reshape2 shiny]; }; - FunChisq = derive2 { name="FunChisq"; version="2.2.2"; sha256="1wfj42ibzk8riana50yv7r7fl78nggpgmgwn9q2qyrbr1413jj2b"; depends=[BH Rcpp RcppClassic]; }; + FunChisq = derive2 { name="FunChisq"; version="2.3.3"; sha256="0n4c6lfljp7mbl05r75rj31q0rkwnmj6gif3fmxmv1y5x7x2jrxj"; depends=[BH Rcpp]; }; FunCluster = derive2 { name="FunCluster"; version="1.09"; sha256="0i73asn1w4s6ydf2ddn5wpr0mwbbxzgmaly1pslarzkx71wk03fz"; depends=[cluster Hmisc]; }; FuncMap = derive2 { name="FuncMap"; version="1.0.8"; sha256="04rfmdy1hzxqy16csj6cf3x2kj9lg1xxvvnn494xjdwjdkfkyl09"; depends=[mvbutils]; }; Funclustering = derive2 { name="Funclustering"; version="1.0.1"; sha256="0i6g98mfgdyc9hdzvviynrgqhkzicp8y6s0scqy3ifgk9h1k79dw"; depends=[fda Rcpp RcppEigen]; }; FunctionalNetworks = derive2 { name="FunctionalNetworks"; version="1.0.0"; sha256="071hjgiccbrf1gxrh7niw2w1p6vgc77qvrildi59xhk53qcwzqdp"; depends=[Biobase breastCancerVDX]; }; FusedPCA = derive2 { name="FusedPCA"; version="0.2"; sha256="0z4kvm6mn11fmc8w62aky2binjdcgrw4ij5vg65sb55da9s8d2kd"; depends=[genlasso]; }; + Fuzzy_p_value = derive2 { name="Fuzzy.p.value"; version="1.0"; sha256="1n2m6p03bfip2fxfg8v4k43zgv7lcwwgv4myw2rj46djfwl2l9i7"; depends=[FuzzyNumbers MASS]; }; + FuzzyAHP = derive2 { name="FuzzyAHP"; version="0.8.0"; sha256="1rpmwyqgdbc4hcx375m6j6djbhm4ggb6j9sni2dq8rwza96qv5zb"; depends=[]; }; FuzzyLP = derive2 { name="FuzzyLP"; version="0.1-3"; sha256="1c7yynrz0vfvan9mfin2vsrkhhi3sy8c5nya7l8hja0nh1a4bzki"; depends=[FuzzyNumbers ROI ROI_plugin_glpk]; }; + FuzzyMCDM = derive2 { name="FuzzyMCDM"; version="1.1"; sha256="0ss0s65mm6j0nax4mb9g668d9n9cgl0l016mc3h9hbjxfpqrbkks"; depends=[RankAggreg]; }; FuzzyNumbers = derive2 { name="FuzzyNumbers"; version="0.4-1"; sha256="15i0chp43y8xfyzkjrbljmdvgjjx9w1l5ayhvavk9y85pwb147b8"; depends=[]; }; - FuzzyStatProb = derive2 { name="FuzzyStatProb"; version="2.0.1"; sha256="0cj6dqb5iy4gw7kkip9jvk9djf6dx20078kmb42br8sim1065j8m"; depends=[DEoptim FuzzyNumbers MultinomialCI]; }; + FuzzyR = derive2 { name="FuzzyR"; version="2.0"; sha256="1li54ad0lqmmdsr9pcp56d2n8ki6hzdljy8l3lzhrsjmii7ycasw"; depends=[plyr shiny]; }; + FuzzyStatProb = derive2 { name="FuzzyStatProb"; version="2.0.2"; sha256="01rdvsvdfyg8cz6rl1kzwzg9ns5zmikmb7ljlavvzcbg4i1vliqq"; depends=[DEoptim FuzzyNumbers MultinomialCI]; }; + FuzzyStatTra = derive2 { name="FuzzyStatTra"; version="1.0"; sha256="1ijrlnlmq9d5ahgrpzba6kzkaq1zq59zqdgcizybsf9alsswcm00"; depends=[]; }; FuzzyToolkitUoN = derive2 { name="FuzzyToolkitUoN"; version="1.0"; sha256="104s45mmlam67vwpshhpns2mgwvmhnbj8w1918jyk2r5mqibwz06"; depends=[]; }; G1DBN = derive2 { name="G1DBN"; version="3.1.1"; sha256="015rw3bpz32a8254janddgg1ip947qgcvmiwx5r3v7g8n854bwxn"; depends=[igraph MASS]; }; G2Sd = derive2 { name="G2Sd"; version="2.1.5"; sha256="165i6x2k56vwhk5p2p5m9vjmp9flblsapjdlz7nw9b719l6xz5zk"; depends=[ggplot2 reshape2 rJava shiny xlsx xlsxjars]; }; - GA = derive2 { name="GA"; version="2.2"; sha256="1pk80jwzvpmi61df0y331qvl8jkdizblg93s7gaspkbzy50wyfkp"; depends=[foreach iterators]; }; + GA = derive2 { name="GA"; version="3.0.2"; sha256="0jpgbniyxvilnr1jv6vmrfgnar3qczvq819xjb70inp5f41zd6wx"; depends=[foreach iterators]; }; GA4Stratification = derive2 { name="GA4Stratification"; version="1.0"; sha256="0li23mrxjx72fir16j3q06fa32cicck4pfc30n0dy2lysf81m9gs"; depends=[]; }; GABi = derive2 { name="GABi"; version="0.1"; sha256="1zmiaqbd1jrpiz9hk16s8rggcpl3xyyhjkkdliymx2p42vy5b5mf"; depends=[hash]; }; GAD = derive2 { name="GAD"; version="1.1.1"; sha256="0lyrw0d7i7yn1wkqlbf3rg3dnijfwsjn3kdbsg19hmvwq6qpsak2"; depends=[matrixStats R_methodsS3]; }; @@ -824,62 +1023,83 @@ in with self; { GANPA = derive2 { name="GANPA"; version="1.0"; sha256="0ia8djv46jm397nxjrm9yc5gacf1r4z0ckiliz57cbrqwh7z2wpa"; depends=[GANPAdata]; }; GANPAdata = derive2 { name="GANPAdata"; version="1.0"; sha256="0mhdadl7zgsacn59ym42magg3214k1xhabwn78fv7kgccszcgc86"; depends=[]; }; GAR = derive2 { name="GAR"; version="1.1"; sha256="12xgk87bndinx7ibaasn51a9fad3ymvpjmixa7l18pfy99l3pcll"; depends=[httr jsonlite]; }; - GAabbreviate = derive2 { name="GAabbreviate"; version="1.2"; sha256="1q3m3srkh1zzrfxnl1hbhg4imml8zibd6vhshvwnbhz7pqyplzn9"; depends=[GA psych]; }; + GAS = derive2 { name="GAS"; version="0.1.5"; sha256="14n973bks28chxxlidz578359nh8kd2jjp32k1fp2r8qfddsk21i"; depends=[MASS numDeriv Rcpp RcppArmadillo Rsolnp xts zoo]; }; + GAabbreviate = derive2 { name="GAabbreviate"; version="1.3"; sha256="0cq6bg3w0ji44rsz1p4j17fk0jg8rafbjixwi3fjdndc3yd874r5"; depends=[GA psych]; }; GB2 = derive2 { name="GB2"; version="2.1"; sha256="06rcck97pdm1rsb02cy0jd9fknv0mz5jwk364gsaahdk56ddk18a"; depends=[cubature hypergeo laeken numDeriv survey]; }; GCAI_bias = derive2 { name="GCAI.bias"; version="1.0"; sha256="10092mwpmfbcga0n39a0i6g8xxch8xiwg15cckipw6yxjyx0sivc"; depends=[]; }; GCD = derive2 { name="GCD"; version="3.0.5"; sha256="1ami5xw5xx464pxr9y1z9bb3dvj46vx3wrbh19w4g7sk8yjvh5nl"; depends=[]; }; - GCPM = derive2 { name="GCPM"; version="1.2"; sha256="034vsy9kjag7c3mzgswbm356cyay908dwnxj63gd93aakknm120x"; depends=[Rcpp RcppProgress]; }; + GCPM = derive2 { name="GCPM"; version="1.2.2"; sha256="0k2ng78bk3bxpj6nz80j5cvjd56zjz328ga68vyyc3hvdjgpspqj"; depends=[Rcpp RcppProgress]; }; + GCalignR = derive2 { name="GCalignR"; version="0.1.0"; sha256="0prky8n2j6xvq4srxcp08k4wlikg7hhj78mw7fjqbf01sl0zhwz5"; depends=[ggplot2 readr reshape2 stringr]; }; GDAdata = derive2 { name="GDAdata"; version="0.93"; sha256="13ks97i289rc4i7gpqrifwbj0m9rx8csjhnfg8mad10qmjwz7p8b"; depends=[]; }; GDAtools = derive2 { name="GDAtools"; version="1.3"; sha256="1av29mllix0az4n85vxh1344j6jmy103hd78ibjwxalm620rp7ns"; depends=[FactoMineR]; }; GDELTtools = derive2 { name="GDELTtools"; version="1.2"; sha256="1rx6kjh7kmyycqapvbizcxkcfp09qvqv7k8f25v333sxkacpz6p5"; depends=[plyr TimeWarp]; }; + GDINA = derive2 { name="GDINA"; version="1.2.1"; sha256="1ay3s4r8v4zzggmxbq7m1kppb2bpa8mcgsiaak82955l19k40dy4"; depends=[alabama data_table ggplot2 MASS nloptr numDeriv Rcpp RcppArmadillo Rsolnp]; }; + GEEaSPU = derive2 { name="GEEaSPU"; version="1.0.2"; sha256="02pwjqd94kranc1f69bx9rzk27kchavhvhl9fygjhrr40nwq3pbg"; depends=[gee Rcpp RcppArmadillo]; }; + GEEmediate = derive2 { name="GEEmediate"; version="1.0.0"; sha256="0fs5gamfpv5z4p92x76gy55zmf0pmh5cdhgnp9dnh58x0d9mij5y"; depends=[gee]; }; GENEAread = derive2 { name="GENEAread"; version="1.1.1"; sha256="0c3d76yl8dqclk8zhhgrd6bv6b599vkpbyg3hjspb6npdw6zs6k8"; depends=[bitops]; }; GENLIB = derive2 { name="GENLIB"; version="1.0.4"; sha256="1gl8qsgm9iy57rlajgc47lfxah52jsg7lpj131a6813kj0c639l7"; depends=[bootstrap doParallel foreach kinship2 lattice Matrix quadprog Rcpp]; }; GEOmap = derive2 { name="GEOmap"; version="2.3-8"; sha256="14nar0djn8jzcyv0aij79xr3iqbgllrpcnfazi865plfa5ah7k9v"; depends=[fields MBA RPMG splancs]; }; - GERGM = derive2 { name="GERGM"; version="0.7.4"; sha256="02r5gkyhdqkcq1q1g9xg595riny77mdifx7maj0agby5jm49y3x0"; depends=[BH coda ggplot2 igraph plyr Rcpp RcppArmadillo stringr]; }; + GERGM = derive2 { name="GERGM"; version="0.10.0"; sha256="0fg984d553zfnnv00flmlzib4zjvgp33lgmbczvr4wssj4rsbpj7"; depends=[BH coda ggplot2 igraph plyr Rcpp RcppArmadillo RcppParallel scales slackr stringr vegan]; }; + GESE = derive2 { name="GESE"; version="2.0.0"; sha256="04gd9xplwk5kknwikn5c8wa01bbc10ijfj08gpycf0x0q54szf8y"; depends=[kinship2]; }; GESTr = derive2 { name="GESTr"; version="0.1"; sha256="1q12l2vcq6bcyybnknrmfbm6rpzcmxgq2vyj33xwhkmm9g2ii9k6"; depends=[gtools mclust]; }; GEVStableGarch = derive2 { name="GEVStableGarch"; version="1.1"; sha256="1iypv0k4cbvsdyglgvf7y52sqvl5qcin627pjqwq42kisqynm8d7"; depends=[fExtremes fGarch Rsolnp skewt stabledist timeDate timeSeries]; }; GEVcdn = derive2 { name="GEVcdn"; version="1.1.4"; sha256="13p6wi72z6j7iyp5hv16ndvsq6jf6hdqgcmf1i8g713gn73l79kj"; depends=[VGAM]; }; + GEint = derive2 { name="GEint"; version="0.1.2"; sha256="12jkrflv9p05bnsx5xqyr55c18q1vrs1wlcni38zyppd334yyiyh"; depends=[geepack mvtnorm nleqslv pracma rje speedglm]; }; GExMap = derive2 { name="GExMap"; version="1.1.3"; sha256="1a6i2z9ndgia4v96nkr77cjqnbgxigqbqlibg82gwa0a6pl7r7nz"; depends=[Biobase multtest]; }; - GFD = derive2 { name="GFD"; version="0.1.4"; sha256="1id4c07b061sjkvigl88zk6bv10brclcsz32z43dbp49xjd5x6nl"; depends=[magic MASS Matrix plotrix plyr RGtk2]; }; + GFA = derive2 { name="GFA"; version="1.0.0"; sha256="1mgcgdypfpd3i5n5kgk162p1jp9gfz1h7h3rlzrw9srsbc6dza97"; depends=[]; }; + GFD = derive2 { name="GFD"; version="0.2.2"; sha256="1llz22cqp26336ybfkmn98v80zl09hpjx34f9c5bf39lc6w1645h"; depends=[magic MASS Matrix plotrix plyr]; }; GGEBiplotGUI = derive2 { name="GGEBiplotGUI"; version="1.0-9"; sha256="0nd0ky3m1avy82z48g7hcysq0y0agxjxdn0g624dkm2w99avxw3j"; depends=[rgl tkrplot]; }; - GGIR = derive2 { name="GGIR"; version="1.2-2"; sha256="186yp8314ygsz5w3zrv76jswh79s5laglnw2lair69ib7d94bsh1"; depends=[]; }; + GGIR = derive2 { name="GGIR"; version="1.4"; sha256="0vg7kpz8cx12jc06z8hjgss6n20z9h262z4rki4mnmllv2hmjqx2"; depends=[data_table]; }; GGMridge = derive2 { name="GGMridge"; version="1.1"; sha256="0zbfvvp7l836m118m8nmdvw1w7xq6d3b7qirskjsq1dkk23j41hs"; depends=[MASS mvtnorm]; }; - GGMselect = derive2 { name="GGMselect"; version="0.1-10"; sha256="0ihxxih5fw470pnmnljsarahd4xim6ncx3w7fym5i5q86bqcyahb"; depends=[gtools lars mvtnorm]; }; - GGally = derive2 { name="GGally"; version="1.0.1"; sha256="1wradjcphk6mr817lnk3q3rbingn8xrsrprsxh0mv4w8g0wcibif"; depends=[ggplot2 gtable plyr reshape]; }; + GGMselect = derive2 { name="GGMselect"; version="0.1-11"; sha256="1ir3zyi9xxq9aq1zxl506x1fwxsv7rd350k461l9lc2r5338xrgh"; depends=[gtools lars mvtnorm]; }; + GGally = derive2 { name="GGally"; version="1.3.0"; sha256="12ddab0nd0f9c7bb6cx3c22mliyvc8xsxv26aqz3cvfbla8crp3b"; depends=[ggplot2 gtable plyr progress RColorBrewer reshape]; }; GHQp = derive2 { name="GHQp"; version="1.0"; sha256="0qpcpwv7rz67qhz1p5k2im02jvs7l8z9sa6ypz13hig5fzm8j9bp"; depends=[statmod]; }; + GHap = derive2 { name="GHap"; version="1.2.2"; sha256="1qwv4llcixklr9d6lq4ljzbs8al80xnvqkcajnh8dbf3axmlmr5b"; depends=[bigmemory lme4 Matrix]; }; GIGrvg = derive2 { name="GIGrvg"; version="0.4"; sha256="0sflklyzl2l5bcjhz7n75aww76ih93sq5mbgdc4v1p0vqhrbbg47"; depends=[]; }; GISTools = derive2 { name="GISTools"; version="0.7-4"; sha256="06alb5d2k4qj344i9cpgm3lz9m68rkmjqfx5k2hzn7z458xjrlxs"; depends=[maptools MASS RColorBrewer rgeos sp]; }; - GLDEX = derive2 { name="GLDEX"; version="2.0.0.3"; sha256="0ymarfwpm7gagq6wk40n0nsmd14r19pbqbrgigk6cvb8dc2zpbfz"; depends=[cluster]; }; - GLDreg = derive2 { name="GLDreg"; version="1.0.3"; sha256="0d7cclmmhgaf95bw738d8hz166qsr9df33g73ihy8pla3sg5lr7q"; depends=[GLDEX]; }; - GLMMRR = derive2 { name="GLMMRR"; version="0.1.2"; sha256="0mvldp1vf15pga0c7awf4xi431nh16rzcl0895pn728x30g2pk8d"; depends=[lme4]; }; + GK2011 = derive2 { name="GK2011"; version="0.1.3"; sha256="13vafhbgcsj485f12qv962y07v3hil3pla51vkl2b030amzy86jv"; depends=[]; }; + GLDEX = derive2 { name="GLDEX"; version="2.0.0.5"; sha256="0mr8qhccp8dndp43v8ym22f4djrjr8qcxbv61lwabk2462llwln6"; depends=[cluster]; }; + GLDreg = derive2 { name="GLDreg"; version="1.0.6"; sha256="02g4g3w7dq5jjrir1fcxirbx36ci04fcadli921r6hz4xifhil7d"; depends=[ddst GLDEX]; }; + GLMMRR = derive2 { name="GLMMRR"; version="0.2.0"; sha256="0s3jfh720acfmbadilq2c6gql3yifsbijpmw1jkzbsdc87pqi1db"; depends=[lattice lme4]; }; + GLMaSPU = derive2 { name="GLMaSPU"; version="1.0"; sha256="0zx2bza5v5cfp9v7hf42s57522b6prawcwl77aa3kvjcnb0ish6g"; depends=[MASS mnormt mvtnorm Rcpp RcppArmadillo]; }; GLSME = derive2 { name="GLSME"; version="1.0.3"; sha256="0flja5gk25k4z9hwskvdw4c1f88scc47xvc1l3d2447fkfrb0bwc"; depends=[corpcor mvtnorm]; }; - GMCM = derive2 { name="GMCM"; version="1.2.2"; sha256="1zvhbxz1bli460c9nh2p3vx7v3a5w2jwyyyd7r8dqgxpf3xr1pzw"; depends=[Rcpp RcppArmadillo]; }; + GMCM = derive2 { name="GMCM"; version="1.2.4"; sha256="1y0yr6i4l28qw22drca7r4mzqjfbpm3jdssfb7p8pc664g6vmm81"; depends=[Rcpp RcppArmadillo]; }; GMD = derive2 { name="GMD"; version="0.3.3"; sha256="0hdya8ai210wxnkfra9bzyswk3gib5fm53fs61rh0nsmg3ysdga6"; depends=[gplots]; }; - GMDH = derive2 { name="GMDH"; version="1.3"; sha256="0a4n98247r5a7j8p63ih9845gwfik59j9qh604hjw16gwvb7g8n2"; depends=[MASS]; }; + GMDH = derive2 { name="GMDH"; version="1.6"; sha256="093glyz73246m5f2xb2xgbgi80haj4fanmr325byr99dnf4x35yn"; depends=[MASS]; }; GMMBoost = derive2 { name="GMMBoost"; version="1.1.2"; sha256="01q165vkdiv4qh96lha0g2g94jpnzdclbby6q43ghh9j1yrd4qzj"; depends=[magic minqa]; }; GNE = derive2 { name="GNE"; version="0.99-1"; sha256="1avsl54xdlqq8pw16g84igcwms7if7lvdblqvfc2cn3sk8qi5xdv"; depends=[alabama BB nleqslv SQUAREM]; }; GOGANPA = derive2 { name="GOGANPA"; version="1.0"; sha256="1xbir21zvr5hv2y6nndzpsrpmnr7glrc7y6xgcyb856wx46ajan9"; depends=[GANPA WGCNA]; }; - GORCure = derive2 { name="GORCure"; version="1.0"; sha256="0jkhhawbaihqb0kk6l4g5m65nfbww5fmr1hh7bgsnbsy0qv6hfp0"; depends=[ICsurv MASS pracma survival]; }; - GOplot = derive2 { name="GOplot"; version="1.0.1"; sha256="0i4b26wkgf77z515027bmq5pqd21bhg0qrg6jbmwiv59nczr146b"; depends=[ggdendro ggplot2 gridExtra RColorBrewer]; }; + GORCure = derive2 { name="GORCure"; version="2.0"; sha256="1hazin0q74hf16azxa5h08kfj7g1079q77n2fn4fahpfxb8hmvwm"; depends=[ICsurv MASS pracma survival]; }; + GOplot = derive2 { name="GOplot"; version="1.0.2"; sha256="1y8dv0kbzpr9za91njw0x233vx5d13vqml9hmpddcyi9s6va5nix"; depends=[ggdendro ggplot2 gridExtra RColorBrewer]; }; GPArotation = derive2 { name="GPArotation"; version="2014.11-1"; sha256="15jh5qqqwx47ara6glilzha87rnih0hs5fsz0jjqwv6wr1gw26rm"; depends=[]; }; + GPB = derive2 { name="GPB"; version="1.0"; sha256="18cdgz00j0j1rchzn2l253rii3b0iv9ipnh5sk3yvmwrqiabmrf8"; depends=[]; }; GPC = derive2 { name="GPC"; version="0.1"; sha256="1naqy5g6a0z65wssfic5s7cw9v0zjckk526nian3l98ci22sz0j7"; depends=[ks lars orthopolynom randtoolbox]; }; GPCSIV = derive2 { name="GPCSIV"; version="0.1.0"; sha256="118l792mwd54xsi3g8afg3vc6wds8j6fyaz3mwmq04mlcyblym4l"; depends=[scatterplot3d sqldf]; }; GPFDA = derive2 { name="GPFDA"; version="2.2"; sha256="1xqk03g8b8hi1vdqh6a9wml8ln0ad6lmy14z8k8c4wdc5kbzdr0b"; depends=[fda fda_usc MASS spam]; }; GPLTR = derive2 { name="GPLTR"; version="1.2"; sha256="0b4s090jlp2qpqqr0b1ifwyf2fal156y7vg9mjkw53y623ms5pix"; depends=[rpart]; }; - GPareto = derive2 { name="GPareto"; version="1.0.2"; sha256="05q2r51byzxj5jrxbpw1zicm3jc2vx4lqibhspbq61hxbsg6hy4m"; depends=[DiceDesign DiceKriging emoa KrigInv ks MASS pbivnorm pso randtoolbox Rcpp rgenoud]; }; + GPareto = derive2 { name="GPareto"; version="1.0.3"; sha256="1krvnmyn0yw65fn92lsxw0y3pxzpkx6b5dsgvrm47gyaphpynk4s"; depends=[DiceDesign DiceKriging emoa KrigInv ks MASS pbivnorm pso randtoolbox Rcpp rgenoud]; }; GPfit = derive2 { name="GPfit"; version="1.0-0"; sha256="0g0g343ncqsqh88qq9qrf4xv5n3sa980kqbvklcx534dmn6a7n2i"; depends=[lattice lhs]; }; + GPrank = derive2 { name="GPrank"; version="0.1.2"; sha256="0z9xhydnq04p872zl7glxhndmijjihfgffl6bijc9a0rs95zaacd"; depends=[gptk matrixStats RColorBrewer tigreBrowserWriter]; }; GPseq = derive2 { name="GPseq"; version="0.5"; sha256="0k5xif44qk2ppvcyja16xshmfciq1h84l1w6d8dfkyryfajbc8ai"; depends=[]; }; GPvam = derive2 { name="GPvam"; version="3.0-3"; sha256="0dmws29ahbjhx82s2i8jfzhl8pp5q201a592w90jvhwy2bnm1ywk"; depends=[Matrix numDeriv Rcpp RcppArmadillo]; }; + GRANBase = derive2 { name="GRANBase"; version="1.2.1"; sha256="1fxbgl7z61qdfg0lcjylc00wr819kg9kycc42gsjl1gxxy94b433"; depends=[hwriter switchr]; }; + GRAPE = derive2 { name="GRAPE"; version="0.1.0"; sha256="0kcyz8x6yzq83hcwdlx7yw5jpww819f9d1hax19vn31ccq71xkyw"; depends=[]; }; + GRS_test = derive2 { name="GRS.test"; version="1.0"; sha256="1igyb3rma1v2arx1k16fanvzmlywx0n9lf5jz69vnf6z2qmqvrg5"; depends=[]; }; GRTo = derive2 { name="GRTo"; version="1.3"; sha256="1xkcx2agvrpfnmplgaqx70vz303v8rhwnxdyr4hmdlf4h92lbv8i"; depends=[bootstrap]; }; GRaF = derive2 { name="GRaF"; version="0.1-12"; sha256="1d7mr2z49v6ch4jbzh0dj2yjy2c5p51ws38xfz233sjz475snajr"; depends=[dismo]; }; GSA = derive2 { name="GSA"; version="1.03"; sha256="1h1sbpn1rrdh44w4fx2avc7x24ba40mvpd8b2x5wfrc7a294zf6z"; depends=[]; }; + GSAQ = derive2 { name="GSAQ"; version="1.0"; sha256="1p1rab2dlh4h9bfg464nhx708p7kc4q01ifccdh5756lq1qh2kzv"; depends=[]; }; GSAgm = derive2 { name="GSAgm"; version="1.0"; sha256="18bhk67rpss6gg1ncaj0nrz0wbfxv7kvy1cxria083vi60z0vwbb"; depends=[edgeR survival]; }; - GSE = derive2 { name="GSE"; version="3.3"; sha256="162k50lq7q4fs004d20x2fjnrfm21i33lmdqx6cc59xxpbwgcflx"; depends=[ggplot2 MASS Rcpp RcppArmadillo rrcov]; }; - GSIF = derive2 { name="GSIF"; version="0.4-7"; sha256="1c2lk6yzacwrxvs5v0al8hwvi7ncqdvn4f7ngicy6g8iyi4p7z08"; depends=[aqp dismo gstat plotKML plyr raster rgdal RSAGA sp]; }; + GSE = derive2 { name="GSE"; version="4.1"; sha256="00pvpramk7n3195i3vkmp982igyc1b0xzjqs7xdsvzsnfv7kpcbh"; depends=[cellWise ggplot2 MASS Rcpp RcppArmadillo robustbase rrcov]; }; + GSED = derive2 { name="GSED"; version="1.1"; sha256="0r0bgfmlxb81am34gm5c1bxfwkjl82f51ck1lqf7jwc7w08d75az"; depends=[memoise rootSolve survival]; }; + GSIF = derive2 { name="GSIF"; version="0.5-3"; sha256="1cvdgdnsddl1z6qmxwdglvrf3p8ph8cf3ablnxspn4k70cpiwq3c"; depends=[aqp dismo gstat plotKML plyr raster rgdal RSAGA scales sp]; }; GSM = derive2 { name="GSM"; version="1.3.2"; sha256="04xjs9w4gaszwzxmsr7657ry2ywa9pvpwpczpvinxi8vpj347jbb"; depends=[gtools]; }; + GSMX = derive2 { name="GSMX"; version="0.1"; sha256="1bw249b3a58d9q8cj91w9syyghf6sy8xqnx2jawp83qp8lfbix5x"; depends=[MASS psych]; }; + GSODR = derive2 { name="GSODR"; version="1.0.1"; sha256="14rc9gs4375mwk5gzz17iadb5gnphw411rh4sxhg8y48gj6drlqs"; depends=[curl data_table dplyr fields plyr purrr R_utils readr rgdal sp]; }; GSSE = derive2 { name="GSSE"; version="0.1"; sha256="034mmxa6kjq5kgikhb5q75viagz5ck9irrjbxm26zq9099qxm13b"; depends=[Iso zoo]; }; - GUIDE = derive2 { name="GUIDE"; version="1.0.9"; sha256="1y0y6rwv1khd9bdaz5rl9nmxiangx0jckgihg16wb6hx6kf8kzc1"; depends=[rpanel tkrplot]; }; - GUILDS = derive2 { name="GUILDS"; version="1.2.1"; sha256="1z90qjgrx16yk956phbifcr7jd3w59h7akzz7p6g5ymrcjzih4qf"; depends=[pracma Rcpp subplex]; }; + GSparO = derive2 { name="GSparO"; version="1.0"; sha256="0xna2crxqwy8fj0s79rxbdcaz9x912rp1vdwqv1557fsnmfv2yf0"; depends=[ggplot2 ThreeWay]; }; + GUIDE = derive2 { name="GUIDE"; version="1.2.3.1"; sha256="02chn2mzh6smmiv8rp00cq5rff18bqszazbk8svmvvlgn0a25pj4"; depends=[rpanel tkrplot]; }; + GUILDS = derive2 { name="GUILDS"; version="1.3"; sha256="0zl6x0vn93ybps63fqazvd93f2zwdq0rqqrp7d6n5rnamx99mm8d"; depends=[pracma Rcpp]; }; GUIProfiler = derive2 { name="GUIProfiler"; version="2.0.1"; sha256="10m4d7f2rhw6cmkrnw3jh4iqlkfphf4v7mpfwzw17laq0ncmsx5r"; depends=[graph MASS Nozzle_R1 proftools Rgraphviz rstudioapi]; }; GUTS = derive2 { name="GUTS"; version="1.0.0"; sha256="0s64swhs7wpknvycca7qj36kj910anrh9qrbpyfjl9lw8cqa2058"; depends=[Rcpp]; }; GUniFrac = derive2 { name="GUniFrac"; version="1.0"; sha256="0xr68yv3h2lwn7sxy8l5p9g1z3q9hihg9jamsyl70jj9b2ic80jn"; depends=[ape vegan]; }; @@ -887,84 +1107,108 @@ in with self; { GWASExactHW = derive2 { name="GWASExactHW"; version="1.01"; sha256="19qmk8h7kxmn9kzw0x4xns5p3qqz27xkqq4q6zmh4jzizd0fsl78"; depends=[]; }; GWG = derive2 { name="GWG"; version="1.0"; sha256="1va0cd229dhhi1lmrkpwapcm96hrdmxilrmba02xnl7ikhisw0my"; depends=[]; }; GWLelast = derive2 { name="GWLelast"; version="1.1"; sha256="0c3mcvmvxvgibja6rb8j2mhmmjny825wgvi1dw0pz8pq1kg1q0ay"; depends=[doParallel foreach geosphere glmnet sp spgwr]; }; - GWRM = derive2 { name="GWRM"; version="2.1.0.1"; sha256="1hnnk2p0h8ssg5izqb8lplbpbcldqhfahxv0wkbw5cqyc7ydblak"; depends=[doParallel foreach]; }; - GWmodel = derive2 { name="GWmodel"; version="1.2-5"; sha256="14pp1hy4bqr6kg9fy9nchjm6kb3l85f58rl2449b7wv7vsk3yfvk"; depends=[maptools robustbase sp]; }; - GWsignif = derive2 { name="GWsignif"; version="1.0"; sha256="04663qgy3xmijrx8m1s5ql7zj70mgsd58dl08ci742l1fzmfya5f"; depends=[]; }; + GWRM = derive2 { name="GWRM"; version="2.1.0.2"; sha256="1i8f2a43vn7zjsfb108ckjhi23m93mbm3lc7w7w6grp4ny98xr6g"; depends=[doParallel foreach]; }; + GWmodel = derive2 { name="GWmodel"; version="2.0-1"; sha256="1030qkrwn4b40553j80ignq2dvrnsi1p6wvhq7iq7nmc9jcil1wz"; depends=[maptools Rcpp RcppArmadillo robustbase sp]; }; + GWsignif = derive2 { name="GWsignif"; version="1.2"; sha256="0bss5s3ijnlckz44p7jj49bn2r8nwqckpzwzcv0vci915q8jfsj2"; depends=[]; }; GaDiFPT = derive2 { name="GaDiFPT"; version="1.0"; sha256="15fnj1w30h0zdj032f3js0bbb1qlyk4b54a4aclykwzicqdgalkg"; depends=[]; }; - GameTheory = derive2 { name="GameTheory"; version="2.0"; sha256="0p5zz1waffynnciq1mbjjlnmaif1fnr5799y6izk50ckhh07bgfs"; depends=[combinat gtools ineq kappalab lpSolveAPI]; }; + GameTheory = derive2 { name="GameTheory"; version="2.5"; sha256="05isd08z7k52nvic52gnlmnqvvrxxipcn2njfiz3kp105wvdw1rp"; depends=[combinat gtools ineq kappalab lpSolveAPI]; }; + GameTheoryAllocation = derive2 { name="GameTheoryAllocation"; version="1.0"; sha256="0733vmyr0d9scjd5ixpnggr548snd7nj70knf5hbzc59nmbc5y11"; depends=[e1071 lpSolveAPI]; }; Gammareg = derive2 { name="Gammareg"; version="1.0"; sha256="1a5wibnbd8jg0v8577n1x9kc358qpd4jz7l8h7r541sdpprm6wb0"; depends=[]; }; + GauPro = derive2 { name="GauPro"; version="0.1.0"; sha256="01f8f3adki3g0aiw2km60w8sf78yj68aaj86bj8nizslgkj3z8ln"; depends=[lbfgs R6 Rcpp RcppArmadillo]; }; GeNetIt = derive2 { name="GeNetIt"; version="0.1-0"; sha256="102hq4w94gd7rz80cz1bll9kfblyacsk4h54yjflvqkmrs9x0d2b"; depends=[nlme raster rgeos sp spatialEco spdep]; }; GenABEL = derive2 { name="GenABEL"; version="1.8-0"; sha256="0sd497qvik70iwv7wc8r50rhc5wx153pm8vif738wwqqp43chks3"; depends=[GenABEL_data MASS]; }; GenABEL_data = derive2 { name="GenABEL.data"; version="1.0.0"; sha256="0p66fb0gynjx3mnfvnlz45cbn6xf49gwx9mfyxf584xfcggxaa1c"; depends=[]; }; GenBinomApps = derive2 { name="GenBinomApps"; version="1.0-2"; sha256="1ps1rq8cjlwh658mysdh3xbn5fihanzcwxb38xvg4031vnwv80in"; depends=[]; }; - GenCAT = derive2 { name="GenCAT"; version="1.0.2"; sha256="1najc2261v7l1s2axax2cycz3x2b04hzxsnyq7877346z85sc5vc"; depends=[doParallel dplyr foreach ggplot2]; }; + GenCAT = derive2 { name="GenCAT"; version="1.0.3"; sha256="1rzhp4aypdryr7hrqazax3lzfkxqhls5cf8zsjjip8jb701x46hf"; depends=[doParallel dplyr foreach ggplot2]; }; GenForImp = derive2 { name="GenForImp"; version="1.0"; sha256="1wcvi52fclcm6kknbjh4r9bpkc2rg8nk6cddnf5j8zqbvrwf4k5x"; depends=[mvtnorm sn]; }; GenKern = derive2 { name="GenKern"; version="1.2-60"; sha256="12qmd9ydizl7h178ndn25i4xscjnrssl5k7bifwv94m0wrgj4x6c"; depends=[KernSmooth]; }; GenOrd = derive2 { name="GenOrd"; version="1.4.0"; sha256="17mfrj1fwj8mri1w0bl2pw1rqriidmd67i7gpn9v56g9dzw5rzms"; depends=[MASS Matrix mvtnorm]; }; GenSA = derive2 { name="GenSA"; version="1.1.6"; sha256="1llhjhg39fd2pnm6kn8zjhw6kkg88wn7y3yizr8fna7qc3ixlcii"; depends=[]; }; GenWin = derive2 { name="GenWin"; version="0.1"; sha256="0jm537i4jn3azdpvd50y9p0fssfx2ym2n36d3zgnfd32gqckz3s4"; depends=[pspline]; }; + GeneClusterNet = derive2 { name="GeneClusterNet"; version="1.0.1"; sha256="1xi4c041c4m39f9wb5fklgmhi6ng78iwzzqch5xk9hx5blq6zd4m"; depends=[G1DBN igraph MASS]; }; GeneCycle = derive2 { name="GeneCycle"; version="1.1.2"; sha256="1ghdzdddbv6cnxqd08amy4c4s5jsxa637r828ygffk6z76xjr6b6"; depends=[fdrtool longitudinal MASS]; }; GeneF = derive2 { name="GeneF"; version="1.0"; sha256="0bizf47944b2zv9ayxb9rhrqx0ilz2xlvkw7x5vbg7l67y2g2l4d"; depends=[]; }; GeneFeST = derive2 { name="GeneFeST"; version="1.0.1"; sha256="0qgzjzhwf3nigfi09maywg9zkjxiicwiwiyqfcdk9gsvmp6mr4qn"; depends=[BASIX]; }; GeneNet = derive2 { name="GeneNet"; version="1.2.13"; sha256="0w52apk0nnr8nsskf26ff7ana8xiksr8wqmkjxzwhzgg7fncm61p"; depends=[corpcor fdrtool longitudinal]; }; GeneReg = derive2 { name="GeneReg"; version="1.1.2"; sha256="081qc66mb17dwk886x9l2z4imklxnfs02yqql0ri9c47bpsga7wp"; depends=[igraph]; }; - Geneland = derive2 { name="Geneland"; version="4.0.5"; sha256="1v2m8v4sy95rajjw8m9bg4yal5ay7x1k5kqjxrivm45ad546ykwh"; depends=[fields RandomFields]; }; + Geneland = derive2 { name="Geneland"; version="4.0.6"; sha256="0xm5k0ihmg8j0cx2as1h8lgm1g0vrfdbpb0nacmdqdhafaj03iyz"; depends=[fields RandomFields]; }; GeneralOaxaca = derive2 { name="GeneralOaxaca"; version="1.0"; sha256="19j5c5xr6mdb6pmih94wbjas4yh0dmsqfggg8clvdxkpwk0h338v"; depends=[boot]; }; + GeneralTree = derive2 { name="GeneralTree"; version="0.0.1"; sha256="0wlhpxky4vckmcg0imvcxsg2rg2pbrh5822lpkdp28aj7b4s7wqv"; depends=[R6]; }; GeneralizedHyperbolic = derive2 { name="GeneralizedHyperbolic"; version="0.8-1"; sha256="0rx07z5npawvsah2lhhkryzpj19sg0sl0w410gmff985ksdn285m"; depends=[DistributionUtils RUnit]; }; - GeneticSubsetter = derive2 { name="GeneticSubsetter"; version="0.6"; sha256="0y2wxpgrriyp4yighacszjd3k35j873z9cnqynjmcqi7l2li6rr4"; depends=[rrBLUP]; }; + GeneticSubsetter = derive2 { name="GeneticSubsetter"; version="0.8"; sha256="0bd4snv3dwabc7mknmd2rjmffj67xq535x0bycajhd83d1jhjars"; depends=[]; }; GeneticTools = derive2 { name="GeneticTools"; version="0.3.1"; sha256="033dwg94ns4mz2ixgn180h6qd783gm492p9qs2nf8498cb4ycg9m"; depends=[gMWT plotrix Rcpp RcppArmadillo snpStats]; }; + GenomicTools = derive2 { name="GenomicTools"; version="0.2.3"; sha256="1ga2myi2y5rpab0v58y1ndfqrxmbl1wdr3d0s8215apwiax4rfm4"; depends=[circlize data_table gMWT Rcpp RcppArmadillo snpStats stringr]; }; GeoBoxplot = derive2 { name="GeoBoxplot"; version="1.0"; sha256="164dh49ac3fx38fdglv32lmz92ca8jdd98cbhz6mxsk8r0jcladw"; depends=[]; }; GeoDE = derive2 { name="GeoDE"; version="1.0"; sha256="0wawkzj0344pprm8g884d7by8v74iw96b109rgm7anal48fl30im"; depends=[MASS Matrix]; }; GeoGenetix = derive2 { name="GeoGenetix"; version="0.0.2"; sha256="0rrc8rdf6whpd830s2g9ybz82jcd0il9kkfrjh3xza3b86fasdvg"; depends=[RandomFields]; }; GeoLight = derive2 { name="GeoLight"; version="2.0.0"; sha256="1i49hyj3f5rcw0s6j2csnfwc6mnp5zn44vxjnk05wdkpw6dpvx5i"; depends=[changepoint fields maps MASS]; }; GeoXp = derive2 { name="GeoXp"; version="1.6.2"; sha256="18wdmdwb79ipdjdii068dz9f55b5ldxn95g5q6jcxsqwp0wldvw8"; depends=[KernSmooth quantreg rgeos rgl robustbase spdep splancs]; }; + GeomComb = derive2 { name="GeomComb"; version="1.0"; sha256="05xb6m2ciszxd13yhqdkildh9nsq19ss8885ngj6ynvbchqkii7r"; depends=[forecast ForecastCombinations ggplot2 Matrix mtsdi psych]; }; + GerminaR = derive2 { name="GerminaR"; version="1.0"; sha256="10zwa5grkz95q69l8yvvcj071lql7hh7f7cbmjxl1vnsyanlan4x"; depends=[agricolae assertthat dplyr ggplot2 gtools magrittr shiny tidyr]; }; + GetHFData = derive2 { name="GetHFData"; version="1.2.4"; sha256="0bhrxxrmhmvpks81n9xxzcwgp370ym7sxz6x7cnv50gzyd1yz9sm"; depends=[curl dplyr lubridate RCurl readr stringr]; }; GetR = derive2 { name="GetR"; version="0.1"; sha256="1b2wirhz4nhvmf863czwb8z8b42ilsyjjrg9rc4nd9b7nz50bmjg"; depends=[party]; }; - GetoptLong = derive2 { name="GetoptLong"; version="0.1.1"; sha256="05fwlzzjnl84rv6r2hlqkhhg1y0d4yxmk5w4fpxfc7lpz2zi3zcd"; depends=[GlobalOptions rjson]; }; + GetTDData = derive2 { name="GetTDData"; version="1.2.5"; sha256="0ghi9iram9d67vs12hkw362qnvmk1lk72pjgmx118i4yxh5gvvw3"; depends=[curl RCurl readxl stringi stringr]; }; + GetoptLong = derive2 { name="GetoptLong"; version="0.1.5"; sha256="109x6m904x1cnqb9d0s4yglx6lfllhpdzl6is5d559bfsb990vwd"; depends=[GlobalOptions rjson]; }; GiANT = derive2 { name="GiANT"; version="1.2"; sha256="0h9jx2vpgpzlinf6v9mxj260r22nlqml8xnd2jknw36j5imim57w"; depends=[]; }; + GiNA = derive2 { name="GiNA"; version="1.0.1"; sha256="0his7wsgnggyv9526blxzxa1ni8hwq2ws64wkmha45nvvnm3dsiw"; depends=[doParallel EBImage foreach png]; }; GiRaF = derive2 { name="GiRaF"; version="1.0"; sha256="02356cq0g6v5m72fy5z83bw3nsb7kpc9sy7sykk97735n928z92n"; depends=[BH Rcpp RcppArmadillo]; }; GibbsACOV = derive2 { name="GibbsACOV"; version="1.1"; sha256="1ikcdsf72sn1zgk527zmxw3zjhx0yvkal6dv001cgkv202842kll"; depends=[MASS]; }; GillespieSSA = derive2 { name="GillespieSSA"; version="0.5-4"; sha256="0bs16g8vm9yrv74g94lj8fdfmf1rjj0f04lcnaya7gyak3jhk36q"; depends=[]; }; - GiniWegNeg = derive2 { name="GiniWegNeg"; version="1.0"; sha256="0dd4w7b3l9i78c9qvw2akz3h8annknbpfd3f56bgyw3gcfdrrz0x"; depends=[]; }; + GiniWegNeg = derive2 { name="GiniWegNeg"; version="1.0.1"; sha256="1wqwjalsyp55si839cil6na3khigm0mwn6qkg0kjylq10pabfk2a"; depends=[]; }; Giza = derive2 { name="Giza"; version="1.0"; sha256="13nkm8mk1v7s85kmp6psvnr1v97vi0gid8rsqyq3x6046pyl5z6v"; depends=[lattice reshape]; }; GlobalDeviance = derive2 { name="GlobalDeviance"; version="0.4"; sha256="0s318arq2kmn8fh0rd5hd1h9wmadr9q8yw8ramsjzvdc41bxqq1a"; depends=[snowfall]; }; - GlobalFit = derive2 { name="GlobalFit"; version="1.0"; sha256="0cx4jpr5yhjdqbvnswqjwx7542mnmk73dy99klwg8bsz0c36ii5k"; depends=[sybil]; }; - GlobalOptions = derive2 { name="GlobalOptions"; version="0.0.9"; sha256="1c08rfy8vxay4zrf91r7cxf70w3g35c7mxc6k9wkc2y948jnpj7i"; depends=[]; }; - Gmisc = derive2 { name="Gmisc"; version="1.3.1"; sha256="1gwg1600nyabrs6j721246cnrk9ishj7sc904mqxlbgcp5dxp4s1"; depends=[abind forestplot Hmisc htmlTable knitr lattice magrittr Rcpp rmarkdown XML]; }; + GlobalFit = derive2 { name="GlobalFit"; version="1.2"; sha256="01s51nxcsl8xxn6khbv5jsvpwblwf0iamvr477a1rraqqqj94zx0"; depends=[sybil]; }; + GlobalOptions = derive2 { name="GlobalOptions"; version="0.0.10"; sha256="0vkfr29q92g02138g2iscn95g3dc3shvzlmrh502fw89asm7kh57"; depends=[]; }; + Gmedian = derive2 { name="Gmedian"; version="1.2.3"; sha256="0b2ijr9zlsp1287da3h9qm5cm17xk8zm8cdcj6d4kz0ivgg444py"; depends=[Rcpp RcppArmadillo robustbase RSpectra]; }; + Gmisc = derive2 { name="Gmisc"; version="1.4.1"; sha256="1xdgmvzixc03qz34l57gy85w711iimmfqn6w20rr5b67m5m63drz"; depends=[abind checkmate forestplot Hmisc htmlTable knitr lattice magrittr Rcpp rmarkdown XML]; }; GoFKernel = derive2 { name="GoFKernel"; version="2.1-0"; sha256="17jd1dqwpki4mmzk695g25vvfwvkp4k7jhvw06dmdmn5j09hw373"; depends=[KernSmooth]; }; - Goslate = derive2 { name="Goslate"; version="1.0"; sha256="1pccrpvav5mbh52vdsqvdrshdaa4wvb7m0wc7lkd82k4661fa1qc"; depends=[PythonInR R6]; }; - Grace = derive2 { name="Grace"; version="0.2"; sha256="1ra1k0mpzcss3n5npqlphr1vl69c6x4c47agc7qxrzarryhk973w"; depends=[glmnet scalreg]; }; + GofKmt = derive2 { name="GofKmt"; version="1.0"; sha256="1b91js02kam515p7s0c6v63rl31wk16bvkr4f4z25wa5nb8g8p81"; depends=[Rsolnp]; }; + GoodmanKruskal = derive2 { name="GoodmanKruskal"; version="0.0.2"; sha256="1qwarachkhc2yvjyxfcfbgjc1x9ni5xb7f93zviv8mz3c35bhs3b"; depends=[classInt corrplot]; }; + Grace = derive2 { name="Grace"; version="0.5.1"; sha256="1bx2bqfxxgq5dq9825iad5zgjxx3b2lgw18lzc1fxq5rnximsh08"; depends=[glmnet MASS scalreg]; }; GrammR = derive2 { name="GrammR"; version="1.1.0"; sha256="1rwvgznfxp7d3rzymyljj3pn3z3ggia1bhi4nvpgd79qd4cifi2g"; depends=[ape cluster GUniFrac gWidgets gWidgetsRGtk2 MASS rgl RGtk2]; }; - GrapheR = derive2 { name="GrapheR"; version="1.9-85"; sha256="16x1j3nfkcjszbfp9j3vg5sprdz5991f7j7v14cdwypcyl35yghh"; depends=[]; }; + GraphFactor = derive2 { name="GraphFactor"; version="1.1"; sha256="1jxibd2d5b6vlq27m9ppmm96wsnkqn4pz66n9pwdl8wg2v85npw5"; depends=[igraph]; }; + GraphKit = derive2 { name="GraphKit"; version="0.4"; sha256="12h7p1ka4036d3c1vri014jci02zkjgira6rk8f1mcrv94sywinc"; depends=[Rcpp RcppArmadillo]; }; + GrapheR = derive2 { name="GrapheR"; version="1.9-86"; sha256="1iizknyrpgiz1fh1fjls58n5v5fpki25j7kfbwfkp5ijf1q54ml6"; depends=[]; }; GrassmannOptim = derive2 { name="GrassmannOptim"; version="2.0"; sha256="05r5zg4kf3xd6pp56bl8ldchdxvspxkdfd33b623hndjhn4lj2lq"; depends=[Matrix]; }; - Grid2Polygons = derive2 { name="Grid2Polygons"; version="0.1-5"; sha256="18hgyx8a75allldsc2ih5i1p7ajkwj2x020cfd2hp18zrc4qyp5n"; depends=[rgeos sp]; }; + GreedyExperimentalDesign = derive2 { name="GreedyExperimentalDesign"; version="1.0"; sha256="00a2lcqrj17ckw4npkvm3sxydfn2lyvs7pzpccy3xnzrr006ibsx"; depends=[rJava]; }; + Greg = derive2 { name="Greg"; version="1.2"; sha256="19bzv2nknahzbdnl7n0pcnavsdlwgkprc0yk3ksqllfawnvi39f9"; depends=[Epi forestplot Gmisc Hmisc htmlTable knitr magrittr nlme rms sandwich stringr]; }; + Grid2Polygons = derive2 { name="Grid2Polygons"; version="0.1.6"; sha256="1dgyif5hgjk4jir01pbsmsffn2dhmcci2smvk6vryq0iii3ixwaf"; depends=[raster rgeos sp]; }; GriegSmith = derive2 { name="GriegSmith"; version="1.0"; sha256="1a7gnaig1wvxpph7d8c37kx51dznzk0457fzf7alw95iwpyb4z7j"; depends=[spatstat]; }; - GroupSeq = derive2 { name="GroupSeq"; version="1.3.3"; sha256="0abb18w9jylb1nf6yc6xic6b01f8zfxsm8hsmxk4whivn17ckfp9"; depends=[]; }; + GroupSeq = derive2 { name="GroupSeq"; version="1.3.4"; sha256="0m127793gh00spj2ghapmysvf3dbxhpf2jlms3xxrflh7ajrmy5m"; depends=[]; }; GroupTest = derive2 { name="GroupTest"; version="1.0.1"; sha256="1v2230mw0irsr5y8n45g8sd362jp7f6dy2r532mhflfdqy6i2khs"; depends=[]; }; - GsymPoint = derive2 { name="GsymPoint"; version="1.0"; sha256="0wcscyrkxl1sxhzgm35x2zh94lmnhvj16x77k9vhscc7j8as5d90"; depends=[Rsolnp truncnorm]; }; - GuardianR = derive2 { name="GuardianR"; version="0.6"; sha256="154fp4dx14v43c8ch6b7jaxwwnb0fgqiihm9m4qjywhqm8ask6na"; depends=[RCurl RJSONIO]; }; + GrowingSOM = derive2 { name="GrowingSOM"; version="0.1.1"; sha256="0pzhf27kk9nc73w6wp0qd50i7hk7904y90l2ppdgy738z9gcbz4i"; depends=[plotrix]; }; + GrpString = derive2 { name="GrpString"; version="0.1.1"; sha256="0kqz2m6ycj83s5kcgbf7l6cpfgfrza7b0y23cgljf952pys2ndys"; depends=[plyr]; }; + GsymPoint = derive2 { name="GsymPoint"; version="1.1"; sha256="0dps7mwq17y4fd64if2d99pr38y2wn3mksv3nsijysj0bhiwzh11"; depends=[ROCR Rsolnp truncnorm]; }; + GuardianR = derive2 { name="GuardianR"; version="0.8"; sha256="07bg7wz7d2rgjkw5ldzi5p7nd4ch39m6ql5w4sqnvds4r08jspj9"; depends=[RCurl RJSONIO]; }; Guerry = derive2 { name="Guerry"; version="1.6-1"; sha256="1hpp49w2kd1npsd709cwg125pw6mrqxfv2nn3lcs1mg2r49ki2bl"; depends=[]; }; GxM = derive2 { name="GxM"; version="1.1"; sha256="02rv8qb46ylk22iqn9cgh63vkyrg9a8nr1d0d3j5hqhi0wyhc41r"; depends=[minqa nlme Rcpp]; }; - HAC = derive2 { name="HAC"; version="1.0-4"; sha256="1cywcrj1iz46p2l0f99msgbipicc53ly5j5mzpaspq8wn8f4fwf0"; depends=[copula numDeriv]; }; + HAC = derive2 { name="HAC"; version="1.0-5"; sha256="0dc79qjhyydq0k4d8wvg970hs56i9yhxjrh5ky9a178ya61vw208"; depends=[copula numDeriv]; }; HAP_ROR = derive2 { name="HAP.ROR"; version="1.0"; sha256="1id9amz1cc2l2vnpp0ikbhf8ghbgzqd1b9dfivnyglg7996c3gbg"; depends=[ape hash]; }; HAPim = derive2 { name="HAPim"; version="1.3"; sha256="03qy0pxazv3gdq3fck7171ixilb9zi1dwnvc4v7d726g0lvn80pg"; depends=[]; }; + HARtools = derive2 { name="HARtools"; version="0.0.5"; sha256="10a92jsk1ccgxi5g6byrs4fbj5l2kih7vhib0jg6spdqi6rhqla1"; depends=[assertthat htmltools htmlwidgets jsonlite magrittr]; }; HBSTM = derive2 { name="HBSTM"; version="1.0.1"; sha256="0bx7dxcfj46k4kqpqb39w4qkm4hvr1ka8d8rws445vkyl31kr0q6"; depends=[fBasics maps MASS]; }; HBglm = derive2 { name="HBglm"; version="0.1"; sha256="1sral7lh5qw5mn31n8459pk52frgw1bjq0z5ckpsnbc4qf3xxcjn"; depends=[bayesm Formula MfUSampler sns]; }; + HDDesign = derive2 { name="HDDesign"; version="1.1"; sha256="1jim4h9bwn8r637va7m81kwwsfwyzs9pzn5a9i7c8xz8b1x191bj"; depends=[]; }; HDGLM = derive2 { name="HDGLM"; version="0.1"; sha256="0a5lnh3780lsczj8339sp97c5y64a2gsdf77i56fvpxpphq0dnf8"; depends=[]; }; - HDInterval = derive2 { name="HDInterval"; version="0.1.2"; sha256="02rjqja2bcxc97hb6fg2xjxxkljsdv0g84qww39jq1pvgkswmm4g"; depends=[]; }; + HDInterval = derive2 { name="HDInterval"; version="0.1.3"; sha256="1zjddw8s6xc2gsz6285g3dzzarnhb77sra1dbxghgn2nrgn2y0i5"; depends=[]; }; HDMD = derive2 { name="HDMD"; version="1.2"; sha256="0na0z08fdf47ghfl2r3fp9qg5pi99kvp7liymwxym2wglkwl4chq"; depends=[MASS psych]; }; HDPenReg = derive2 { name="HDPenReg"; version="0.93.1"; sha256="1av4x9xqf4y1qfdkh9f0msskj9fqimng1i9bdlgl2ycfn8a64cjp"; depends=[Matrix Rcpp rtkore]; }; - HDclassif = derive2 { name="HDclassif"; version="1.3"; sha256="1b80dnaa6m4px0ijpd9yf45v8jl0b9srcmrdyar8fs7lxpc53k2l"; depends=[MASS]; }; + HDclassif = derive2 { name="HDclassif"; version="2.0.2"; sha256="0gykjqqhrqz1x9xl867hxhrp197y3x4679zh9v84i1nd9yxlamah"; depends=[MASS rARPACK]; }; + HDoutliers = derive2 { name="HDoutliers"; version="0.15"; sha256="01ylj4wnhqy8931lkhdgx552kv1h7hl4ngkpqbnhq75amyh34c46"; depends=[FactoMineR FNN mclust]; }; + HDtest = derive2 { name="HDtest"; version="0.1"; sha256="0vlwpx9l6r0izfcf9fgna72w39w64b95s3q527mapjb6a3676avg"; depends=[checkmate doParallel expm foreach MASS mvtnorm]; }; HDtweedie = derive2 { name="HDtweedie"; version="1.1"; sha256="14awd7sws0464f68f5xwnv1xvr0xflvx2z2zzcfj1csvk3af0zzj"; depends=[]; }; HEAT = derive2 { name="HEAT"; version="1.2"; sha256="1qifqd06ifl0f5l44mkxapnkwhpm0b82yq6dhfw4f8yhb27wd0z2"; depends=[]; }; - HGNChelper = derive2 { name="HGNChelper"; version="0.3.1"; sha256="0vidw7gdvr0i4l175ic5ya8q2x2jj0v2vc7fagzrp2mcy7fn1y6a"; depends=[]; }; - HH = derive2 { name="HH"; version="3.1-25"; sha256="0lrli7rci0m9xb3fx51m59mcikyfhzsjmjp5s59ilahz70gkxnnw"; depends=[abind colorspace gridExtra Hmisc lattice latticeExtra leaps multcomp RColorBrewer reshape2 Rmpfr shiny vcd]; }; - HHG = derive2 { name="HHG"; version="1.5.1"; sha256="111b3lqkp8z7m3g4vgmd0dcplkm4szfwa620sxy70084qad1jv4d"; depends=[]; }; + HGNChelper = derive2 { name="HGNChelper"; version="0.3.4"; sha256="09wwhi8qwmzcwsivnms9zjl4xmbbg0dnx5aj9a2fqaa06m4kd6pk"; depends=[]; }; + HH = derive2 { name="HH"; version="3.1-34"; sha256="1srr195ha8n4va30impm12p2kamkl36whl8g10pl80hwgg20pbqk"; depends=[abind colorspace gridExtra Hmisc lattice latticeExtra leaps multcomp RColorBrewer reshape2 Rmpfr shiny vcd]; }; + HHG = derive2 { name="HHG"; version="2.0"; sha256="1y6w62ivbhqpl6zgwpxq9r2w5nlc70zj8f7rnnhck162p6hyp778"; depends=[]; }; HI = derive2 { name="HI"; version="0.4"; sha256="0i7y4zcdr6wcjy43lz9h8glzpdv0pz7livr95xb1j4p8zafykday"; depends=[]; }; + HIBPwned = derive2 { name="HIBPwned"; version="0.1.3"; sha256="121rs767h9c7ngkbnbfv8zl7jjzimw68z9gwbz0dc0z8w3h3mq5y"; depends=[httr jsonlite urltools]; }; HIV_LifeTables = derive2 { name="HIV.LifeTables"; version="0.1"; sha256="0qa5n9w5d5l1kr4827a34581q380xmpyzmmhhl300z1jwr0j94df"; depends=[]; }; HIest = derive2 { name="HIest"; version="2.0"; sha256="0ik55kxhzjyg6z6072iz9nfaj7x1nvf91l1kysgvkjccr6jf3y86"; depends=[nnet]; }; - HK80 = derive2 { name="HK80"; version="0.0.1"; sha256="1qhknrqpspxrdxzf5kakans94db58bbhgpblvpwcyw4jrjmm0ng7"; depends=[]; }; + HK80 = derive2 { name="HK80"; version="0.0.2"; sha256="0c8scpzl5xgqm9rlsvh5nl3bz42i5pzvb873j9bn3bi15gcknbny"; depends=[]; }; + HKprocess = derive2 { name="HKprocess"; version="0.0-2"; sha256="1j2yhb7k8zf4nlzdf0p6x9ca7ak4lwwak8mcc60kpilw2fws27k5"; depends=[gtools MCMCpack]; }; HLMdiag = derive2 { name="HLMdiag"; version="0.3.1"; sha256="02pgvfyj3xpy7laxryqivsws8jl3m79fwfzpqj8ad794a06gh87g"; depends=[ggplot2 MASS Matrix mgcv plyr Rcpp RcppArmadillo reshape2 RLRsim]; }; - HLSM = derive2 { name="HLSM"; version="0.5"; sha256="0j1jfnm5lydlcjdbb31jd514is5brvfzrx8h4ckw4p7xa4syg08s"; depends=[coda MASS]; }; + HLSM = derive2 { name="HLSM"; version="0.7"; sha256="0cj4mbg7vamlabxynik59n5l3w5fiwa84qypprr8wr7ms2aimfa0"; depends=[coda igraph MASS]; }; HMDHFDplus = derive2 { name="HMDHFDplus"; version="1.1.8"; sha256="15z0war5isw9xnln7py3di8f45pwvdw6x6wljl18fcxpmanmlfcf"; depends=[RCurl XML]; }; HMM = derive2 { name="HMM"; version="1.0"; sha256="0z0hcqfixx1l2a6d3lpy5hmh0n4gjgs0jnck441akpp3vh37glzw"; depends=[]; }; HMMCont = derive2 { name="HMMCont"; version="1.0"; sha256="1drni4f72x83sprn65wnhw0pv1q8lfkgmxdr9h4rwv1accril85x"; depends=[]; }; @@ -972,100 +1216,127 @@ in with self; { HMP = derive2 { name="HMP"; version="1.4.3"; sha256="15fsyk61y141wdkc5cjrw05gc5kzl2a8cmk2n54c8gmhhjbjy692"; depends=[dirmult doParallel foreach gplots MASS]; }; HMPTrees = derive2 { name="HMPTrees"; version="1.3"; sha256="1q0zfwhzfr45mykql8hsp6pzkfhcplr7gkq7dbd8xa97wxsf63yd"; depends=[ape dirmult doParallel foreach HMP]; }; HMR = derive2 { name="HMR"; version="0.4.1"; sha256="1acaph5q6vgi4c7liv7xsc3crhp23nib5q44aszxhramky0gvaqr"; depends=[]; }; + HMVD = derive2 { name="HMVD"; version="1.0"; sha256="0agzvsl2n3zg3i519b93jqpiq9zix0bbrjdzk3ymsbb42dzkmj0d"; depends=[MASS]; }; HPbayes = derive2 { name="HPbayes"; version="0.1"; sha256="1kpqnv7ymf95sgb0ik7npc4qfkzc1zb483vwnjpba4f42jhf508y"; depends=[boot corpcor MASS mvtnorm numDeriv]; }; - HRM = derive2 { name="HRM"; version="0.1"; sha256="12pjsy9hx0sz42czfwvsla6pyp85as4pf2hhvbh0yp07wwfs2f3i"; depends=[MASS matrixcalc]; }; - HSAR = derive2 { name="HSAR"; version="0.3.6"; sha256="1f4n65gbql1kaqf1izbh4ngqsv36ccypy7n40rlc5fi0hjxsff23"; depends=[Rcpp RcppArmadillo spdep]; }; + HRM = derive2 { name="HRM"; version="0.4.3"; sha256="1g6kka2havns39c2m3ynq3k2zfl5vjvrf2xhhr3xhfd1p4sl0c6g"; depends=[ggplot2 MASS matrixcalc plyr reshape2]; }; + HRQoL = derive2 { name="HRQoL"; version="1.0"; sha256="1gr9rhr8gdnh7bw2v3r0xc3yhmzrx2gzgsd8wd5mmsp81ph0h5lz"; depends=[car fmsb Matrix matrixcalc numDeriv RColorBrewer rootSolve]; }; + HSAR = derive2 { name="HSAR"; version="0.4.0"; sha256="1k40hh546hrdm2yh64l51sky17mnmkzckb7l3bnkpw495rsk73g2"; depends=[Rcpp RcppArmadillo spdep]; }; HSAUR = derive2 { name="HSAUR"; version="1.3-7"; sha256="16qmsyin8b7x9q3xdx74kw6db6zjinhxprp6pfnl6ddwxhz3jzzf"; depends=[]; }; HSAUR2 = derive2 { name="HSAUR2"; version="1.1-14"; sha256="0psykccxyqigkfzrszy7x3qhdw02kppzgz0bqr21q8zh51jb2y3v"; depends=[]; }; HSAUR3 = derive2 { name="HSAUR3"; version="1.0-5"; sha256="0hjlkmxp1yhwkfcbx16nda96ysqddjrcvl4z52w2ab84prqn6196"; depends=[]; }; HSROC = derive2 { name="HSROC"; version="2.1.8"; sha256="056g6iygrddmpmg5nnilqrlw2xavmcc9q07z942vc2nivw06h346"; depends=[coda lattice MASS MCMCpack]; }; HSSVD = derive2 { name="HSSVD"; version="1.2"; sha256="1k7ga397grl0r4p0ipjgw5xlafb2528rpww67bw7mmy01w87a1cc"; depends=[bcv]; }; HTMLUtils = derive2 { name="HTMLUtils"; version="0.1.7"; sha256="05y505jazzahnd6jsp3plqz8hd75991hhhcpcdn8093rinb1f8l1"; depends=[R2HTML]; }; - HTSCluster = derive2 { name="HTSCluster"; version="2.0.4"; sha256="1kvq118hqxc81n88g4bq10lh84dydrqqhzig246wf3f97ajvq7y0"; depends=[capushe edgeR plotrix poisson_glm_mix]; }; + HTSCluster = derive2 { name="HTSCluster"; version="2.0.8"; sha256="0wnbfh6hdx8692jilgmv8sys1zm6fqc6mim7vvjhyqlmpm8gm0kg"; depends=[capushe edgeR plotrix]; }; + HTSSIP = derive2 { name="HTSSIP"; version="1.0.3"; sha256="09cid6zma00adxf03p0iydfpq9xrds72a174aa7dbwgvsbzqh4p0"; depends=[coenocliner DESeq2 dplyr ggplot2 lazyeval magrittr phyloseq plyr stringr tidyr]; }; HUM = derive2 { name="HUM"; version="1.0"; sha256="1bq74l88jvscmq9ihv5wn06w2wng073ybvqb2bdx2dmiqlpv6jw2"; depends=[gtools Rcpp rgl]; }; HW_pval = derive2 { name="HW.pval"; version="1.0"; sha256="14nmyqw2d9cmn64789yc54fmiqanh6n1dizp7vj94h7b0jwq63yy"; depends=[]; }; HWEBayes = derive2 { name="HWEBayes"; version="1.4"; sha256="1rbffx6pn031a278ps9aqxcaq8yi73s5kf60za143ysbfxv9dphw"; depends=[MCMCpack mvtnorm]; }; HWEintrinsic = derive2 { name="HWEintrinsic"; version="1.2.2"; sha256="035r5bi7m66g351cmrfmf4cj5qqm4fn5pgy3lzsp3gyp2dv0rkg5"; depends=[]; }; HWxtest = derive2 { name="HWxtest"; version="1.1.7"; sha256="030fl88bj0g7y9b9kd56bnxh0cad6y84bnmvsgwlanb51n3ggz3w"; depends=[]; }; HadoopStreaming = derive2 { name="HadoopStreaming"; version="0.2"; sha256="1l9msaizjvnsj1jrpghj4g057qifdgg6vbqhfxhn1fiqdqi2056q"; depends=[getopt]; }; - HandTill2001 = derive2 { name="HandTill2001"; version="0.2-11"; sha256="1vv3vm1hlfibgw84y52nzb5a66jigbmx3611lf4kmqfl1y4wm3rg"; depends=[]; }; + HandTill2001 = derive2 { name="HandTill2001"; version="0.2-12"; sha256="1rijjv27zwdznznvwlb5hahixmfxayr6vs11p1mzwqma8qhsn5ak"; depends=[]; }; Hankel = derive2 { name="Hankel"; version="0.0-1"; sha256="0g3b0ji8hw29k0wxxvlnbcm0z91p4vbajbrhm6cqbccjq85lg4si"; depends=[]; }; HapEstXXR = derive2 { name="HapEstXXR"; version="0.1-8"; sha256="00p8pziy8q6vki7brpd57c7ckc9zw41c90h47yp9vb3ndanfqavp"; depends=[survival]; }; - Haplin = derive2 { name="Haplin"; version="5.5"; sha256="12wkj5x1s920xs0xzhxk0dswmwan7x20fw5sj6cx29n013h1gkam"; depends=[DatABEL GenABEL MASS mgcv snow SuppDists]; }; + Haplin = derive2 { name="Haplin"; version="6.0.1"; sha256="1hdni0ni7qbhcwg7ficv09dxj20cavyzijwdc2vk41smdsm9gg9i"; depends=[DatABEL GenABEL MASS mgcv snow SuppDists]; }; HaploSim = derive2 { name="HaploSim"; version="1.8.4"; sha256="0794f76hc9qvjmay7c61cmzycqafljs0g0hliq9xfrw4f23gq3sa"; depends=[]; }; - HardyWeinberg = derive2 { name="HardyWeinberg"; version="1.5.5"; sha256="1kz12301bi2880i9ds7wvc6yb5hvrs3fr5689fm1yygkqfq8zc56"; depends=[mice]; }; + HardyWeinberg = derive2 { name="HardyWeinberg"; version="1.5.6"; sha256="1zpba8l8fjc7ncrw0virfv1s9zaa4xsyn63jiay8ivik98siqhkb"; depends=[mice]; }; HarmonicRegression = derive2 { name="HarmonicRegression"; version="1.0"; sha256="0inz3l610wl0ibqjyrhfbmwmcfzcmcfhixai4lpkbfsyx93z2i4d"; depends=[]; }; Harvest_Tree = derive2 { name="Harvest.Tree"; version="1.1"; sha256="021zmppy7p2iakaxirfjdb5jzakg1ijma9d25ly2ni0nx0p1mh6z"; depends=[rpart]; }; - HelpersMG = derive2 { name="HelpersMG"; version="1.4"; sha256="1wi74b58ya9395wqk3hgs7nddd6mpamal9258gf2wy0s57wmcwr7"; depends=[coda]; }; - HiCfeat = derive2 { name="HiCfeat"; version="1.0"; sha256="0azr6n792dmkg12ynr3nybmb33z8rv046lv0hfwpyybz6p8dj3zq"; depends=[GenomeInfoDb GenomicRanges glmnet IRanges Matrix rtracklayer]; }; + HelpersMG = derive2 { name="HelpersMG"; version="1.8"; sha256="1lw0p02rzb4b9b66435w8dr058bfzpcygfgi75av28lrc75c6skv"; depends=[coda]; }; + HeritSeq = derive2 { name="HeritSeq"; version="1.0.0"; sha256="0ibb2nkjk1d59gc1ljihihsjai3jp4jsbbariv05h1z26pgpc9p3"; depends=[cplm DESeq2 lme4 MASS pbapply SummarizedExperiment tweedie]; }; + HiCfeat = derive2 { name="HiCfeat"; version="1.2"; sha256="01b8isvn4my41n3608k80d38vgd3waq7rxsx1v4p0rl1f3pxn7dn"; depends=[GenomeInfoDb GenomicRanges glmnet IRanges Matrix rtracklayer]; }; + HiCglmi = derive2 { name="HiCglmi"; version="1.0"; sha256="01v7g9h86xb4i8gc2rsyyx952mqafyapydhyyik098s1war4hkf9"; depends=[GenomeInfoDb GenomicRanges glmnet HiTC IRanges MASS Matrix rtracklayer S4Vectors]; }; HiClimR = derive2 { name="HiClimR"; version="1.2.3"; sha256="1yv01pyfmgq306f3yravwf6sm79m0m93gpya95k85rxqdjl3c2hx"; depends=[]; }; HiCseg = derive2 { name="HiCseg"; version="1.1"; sha256="19581k3g71wrznyqrp4hmspqyzcbcfbc48xgjlq13zmqii45hcn6"; depends=[]; }; HiDimDA = derive2 { name="HiDimDA"; version="0.2-4"; sha256="0gxkxzys9mcy33xvsim8klaqmb2xwvy5bvgkn9r400j4qfjd3cgg"; depends=[]; }; HiDimMaxStable = derive2 { name="HiDimMaxStable"; version="0.1.1"; sha256="0gscdjm48yyf8h3bn6xjbjlfc1hwbbh5j6v64c0z3d04h9q35c24"; depends=[copula maxLik mnormpow mnormt partitions VGAM]; }; HiLMM = derive2 { name="HiLMM"; version="1.1"; sha256="09135cwi6kqrvzdlivm86q1dqn6cbbi6nspdm0c2s700jl49pl5z"; depends=[]; }; HiPLARM = derive2 { name="HiPLARM"; version="0.1"; sha256="0af68gfmc89nn1chmqay6ix0zygcp1hmylj02i7l6rx6vb06qw6w"; depends=[Matrix]; }; - HiddenMarkov = derive2 { name="HiddenMarkov"; version="1.8-4"; sha256="1w3j4dnf6ay0a17kn8zdzy38wind4pqfnwlndf9m9fj8m2scaay8"; depends=[]; }; + HiddenMarkov = derive2 { name="HiddenMarkov"; version="1.8-7"; sha256="03fs51l3xxks0dqhl6w5m34djbpkly92bvbm23y3wj3zrxz3d2ml"; depends=[]; }; HierO = derive2 { name="HierO"; version="0.2"; sha256="1lqj5grjly4kzxl7wb192aagz2kdvpnjdan2kcg5yxwvg1xcvwv1"; depends=[bitops RCurl rneos tcltk2 XML]; }; HighDimOut = derive2 { name="HighDimOut"; version="1.0.0"; sha256="0r7mazwq4fsz547d3nyavmqya7144lg3fkl5f7amrp48l9h85vx2"; depends=[DMwR FNN foreach ggplot2 plyr proxy]; }; - HistDAWass = derive2 { name="HistDAWass"; version="0.1.4"; sha256="00jdfv3ij9v431wm1grib9pcr9nfn42r2hjvjj12b61r2v7j2b1n"; depends=[class FactoMineR ggplot2 histogram]; }; - HistData = derive2 { name="HistData"; version="0.7-6"; sha256="1wazqpgjzl5x2whn9v54yx83xw0pd0l03h6rqv6dp25xizxlxw0v"; depends=[]; }; + HistDAWass = derive2 { name="HistDAWass"; version="0.1.6"; sha256="0i43zki95m47nm3yy7m7s66nvpmx6vl3df2bxkpyihc2xsqrsf3l"; depends=[class colorspace FactoMineR ggplot2 histogram]; }; + HistData = derive2 { name="HistData"; version="0.8-1"; sha256="018v8wr95fssc5hzfwzk7x8pax2s41m22a7lvcpy0chy0nvh7dqh"; depends=[]; }; HistogramTools = derive2 { name="HistogramTools"; version="0.3.2"; sha256="1wkv6ypn006d8j6bpbhc1knw0bky4y8r7jp87482yd19q5ljsgv0"; depends=[ash Hmisc stringr]; }; - HiveR = derive2 { name="HiveR"; version="0.2.46"; sha256="1zc1vjb975y9icw9vq65f27nrj2n3c5lgms0alflj837b5zvbhqd"; depends=[jpeg plyr png RColorBrewer]; }; - Hmisc = derive2 { name="Hmisc"; version="3.17-2"; sha256="110w5hbrl10isslqs0iq6w2ll0dafqyqznb50cdcallnlnvbvxrg"; depends=[acepack cluster foreign Formula ggplot2 gridExtra gtable lattice latticeExtra nnet rpart survival]; }; - Holidays = derive2 { name="Holidays"; version="1.0-6"; sha256="031vddjf7s3pirv041y2mw694db63gjajlbczmmya8b1zp2f3vzk"; depends=[TimeWarp]; }; + HiveR = derive2 { name="HiveR"; version="0.2.55"; sha256="14hdnpiw0ccmzb0lj9gwn92hzwwmlpgrxv7mj8kwp89n7kqccvl7"; depends=[jpeg plyr png RColorBrewer]; }; + Hmisc = derive2 { name="Hmisc"; version="4.0-2"; sha256="1lg9k0kj803wsm3h0a991q9l2lrgsqryzfv2z79b88kjbfapqpqr"; depends=[acepack base64enc cluster data_table foreign Formula ggplot2 gridExtra gtable htmlTable htmltools lattice latticeExtra nnet rpart survival viridis]; }; + HoRM = derive2 { name="HoRM"; version="0.1.0"; sha256="07vq8v1pdmm35sna9yz7n6al4g9mf45sx1rbzgsymyjac38zw62k"; depends=[ggplot2 MASS orthopolynom quantmod]; }; + Holidays = derive2 { name="Holidays"; version="1.0-7"; sha256="1srfbhlrf0pd6gzhp4hbic555lb7camk084rn1qz2g7fjvyijqiq"; depends=[TimeWarp]; }; + Homeric = derive2 { name="Homeric"; version="0.1-3"; sha256="1vcs8fj39zpz45p7gph0mnx65hgr35na0b79i8llyw7i1h7zqzxr"; depends=[]; }; HomoPolymer = derive2 { name="HomoPolymer"; version="1.0"; sha256="1bxc33dx9y9rr9aii4vn9d1j9v5pd4c0xayfdldz8d9m2010xr4a"; depends=[deSolve MenuCollection RGtk2]; }; HotDeckImputation = derive2 { name="HotDeckImputation"; version="1.1.0"; sha256="1mqfn6yw5846ynrcgzka0m6ikfppa5civjkhj42rhp2v2xk25li7"; depends=[Rglpk]; }; Hotelling = derive2 { name="Hotelling"; version="1.0-2"; sha256="0dzsqnn4c4av23qjnmacwc78i0xg355p1xwfmgipr04ivym0mqn0"; depends=[corpcor]; }; HyPhy = derive2 { name="HyPhy"; version="1.0"; sha256="0994ymv7sswbp8qw3pay34s926cflw2hq2gnchw7rknybvlsrinq"; depends=[ape R_utils]; }; HybridMC = derive2 { name="HybridMC"; version="0.2"; sha256="1wgzfyk0scwq9s2sdmc91fj7r4d7zlgwgnj6mdiia8w88ja8kzqy"; depends=[coda]; }; - HydeNet = derive2 { name="HydeNet"; version="0.10.3"; sha256="0v3mkpyw2qfi3kywlpvr01vdvi78xcq2v43g90jrihzqrvrd6lm3"; depends=[ArgumentCheck DiagrammeR dplyr graph gRbase magrittr nnet pixiedust plyr rjags stringr]; }; + HydeNet = derive2 { name="HydeNet"; version="0.10.5"; sha256="00h7lj347nag5m5nfyv1hgaml77kqlcxrl704mq6791fcjdchgp1"; depends=[checkmate DiagrammeR dplyr graph gRbase magrittr nnet pixiedust plyr rjags stringr]; }; HydroMe = derive2 { name="HydroMe"; version="2.0"; sha256="1a1d3lay94mzwk8n22l650h3p133npdf4aj63zgrdw4760p54rqf"; depends=[minpack_lm nlme]; }; HyperbolicDist = derive2 { name="HyperbolicDist"; version="0.6-2"; sha256="1wgqbx9ascyk6gw1dmvfz6hljvbh49gb9shr9qgf22qbq83waiva"; depends=[]; }; + IAPWS95 = derive2 { name="IAPWS95"; version="1.0.0"; sha256="1rw6i3a653m11fyza42jhbqi6607fiqgmq15qfn5bqhq8sdgmn9p"; depends=[ggplot2 pander Rcpp]; }; IASD = derive2 { name="IASD"; version="1.1"; sha256="1slhd42k639mbyxccl7n69p7ng2qx6pqag8wz3kdwn479spkavzn"; depends=[]; }; - IAT = derive2 { name="IAT"; version="0.2"; sha256="0byivq2298sjvpsz5z1w7r31h6z2jqpip40z8r2alygbgwwa48pd"; depends=[data_table ggplot2]; }; + IAT = derive2 { name="IAT"; version="0.3"; sha256="110rn2q09gspfd4msyh30dllxdxdraffkr18h1nm72brzhmx9cfi"; depends=[dplyr ggplot2 lazyeval]; }; IATscores = derive2 { name="IATscores"; version="0.1-2"; sha256="0grl5m4ccwaxvhg1bziy3vv5jffkvr24z268ws5m4ia20haif0dm"; depends=[dplyr nem qgraph reshape2 stringr]; }; IBDLabels = derive2 { name="IBDLabels"; version="1.1"; sha256="1m9fd058yjxva6hin7i72i2nl285wfm0jkdn5xcng27yqlijyrm9"; depends=[]; }; IBDhaploRtools = derive2 { name="IBDhaploRtools"; version="1.8"; sha256="1754239pdil6b383mpzyi8zb9l9hzg15dwgn5246v97g1y3mlp5r"; depends=[]; }; - IBDsim = derive2 { name="IBDsim"; version="0.9-5"; sha256="0mhn1byrx98892gy30dar69pp3cnfwpzkl86gzqyjcxa2d9zpc77"; depends=[paramlink]; }; + IBDsim = derive2 { name="IBDsim"; version="0.9-6"; sha256="19dq85qcvcjpfj7lh9h5ld6wm9xrz6zyl2nkpfvh1icwbcqncbxx"; depends=[paramlink]; }; IBHM = derive2 { name="IBHM"; version="1.1-11"; sha256="1m0zxlybcak2v5c4spgaa39ngb2hryak4xd875jryk1dcnk9c702"; depends=[cmaes DEoptim Rcpp]; }; IBrokers = derive2 { name="IBrokers"; version="0.9-12"; sha256="0mhh4kgwrncrcysvnvah6xc7fhx5ywjzn258cs9xj9kzns0jblk6"; depends=[xts zoo]; }; IC2 = derive2 { name="IC2"; version="1.0-1"; sha256="03jjb62msxjxdg9l3zd1ns0d2w37hkxy5pnjgaywxw3vfk4zwfj9"; depends=[]; }; ICAFF = derive2 { name="ICAFF"; version="1.0.1"; sha256="0zazx4nv81s75appg10aayks04mx6m5n9yf5hqrbxh3yj68vzxfy"; depends=[]; }; + ICAOD = derive2 { name="ICAOD"; version="0.9.2"; sha256="12fkcc2ii3652n8ihzm29f9gip790wdmil7c1bzd5ma4l959w7hy"; depends=[nloptr Rcpp RcppEigen Rsolnp]; }; ICBayes = derive2 { name="ICBayes"; version="1.0"; sha256="0z0z74yslhfjbh7188hzyxhwb7kn9raa0xsrr6n592ridpkhaih4"; depends=[HI survival]; }; ICC = derive2 { name="ICC"; version="2.3.0"; sha256="0y8zh9715cp9bglxpygqwgigrarq37sj845lk1xl0ydwinl0a6kk"; depends=[]; }; ICC_Sample_Size = derive2 { name="ICC.Sample.Size"; version="1.0"; sha256="1w6v1jp8bfvf6c49ikswkc5527gdx5cyqnw95x00pgmm6riwlsp9"; depends=[]; }; + ICCbin = derive2 { name="ICCbin"; version="1.0"; sha256="1ybhxk5bvgfsz45r1kbb8b82qwjb8a88q11x5c4dbdk85fkxg3w9"; depends=[]; }; ICE = derive2 { name="ICE"; version="0.69"; sha256="04p8lakaha28mdh965w0ppyxfrz5ssi1n9xifvsbn3ihdra67rip"; depends=[KernSmooth]; }; - ICEbox = derive2 { name="ICEbox"; version="1.0"; sha256="1m3p0b93ksrcsp45m4gszcz01cwbfpj4ldar6l0q3c9lmyqsznx8"; depends=[sfsmisc]; }; + ICEbox = derive2 { name="ICEbox"; version="1.1"; sha256="0yv9ybvk6s3lnyx5xfsnx19x32r9g9gk7klkpc8q672pl4fn4yp5"; depends=[sfsmisc]; }; ICEinfer = derive2 { name="ICEinfer"; version="1.0-1"; sha256="0gjgr1r33w6d5ra0njh15lj46lw6v751yl8iqrdf4a5pazs7w3lm"; depends=[lattice]; }; ICGE = derive2 { name="ICGE"; version="0.3"; sha256="0xin7zml1nbygyi08hhg3wwr2jr1zcsvrlgia89zp4xanxlzgaqa"; depends=[cluster MASS]; }; - ICGOR = derive2 { name="ICGOR"; version="1.0"; sha256="1lgpgxi9ps0dnxllc1095lvdaq5p0dz6w4daw2b7q6jk3m6v5cla"; depends=[ICsurv MASS pracma survival]; }; - ICS = derive2 { name="ICS"; version="1.2-5"; sha256="0q69rhb8an200yi564jzqbfb8b83l6xddqxhk8kw4g3y96jp82qx"; depends=[mvtnorm survey]; }; + ICGOR = derive2 { name="ICGOR"; version="2.0"; sha256="18fn10f5nqqbrfibqmp602nqpx794fy3gpxp1bd10xn48llhqfc4"; depends=[ICsurv MASS pracma survival]; }; + ICS = derive2 { name="ICS"; version="1.3-0"; sha256="0r5lf8km77h29lcpi7z0hkmy4vh0p5m7p2xbxsxj6w9hsgyanv72"; depends=[mvtnorm survey]; }; ICSNP = derive2 { name="ICSNP"; version="1.1-0"; sha256="1g7n8jlilg36hm989s5x18kf8jqn5wy98xi9jmnqkqpds4ff217y"; depends=[ICS mvtnorm]; }; + ICSOutlier = derive2 { name="ICSOutlier"; version="0.2-0"; sha256="1dxbh3qhirr7f2bv68g1xlya5fprm230fdgxhccrzdc0wh0ijh3i"; depends=[ICS moments mvtnorm]; }; + ICV = derive2 { name="ICV"; version="1.0"; sha256="1na87i39jy5d8ibldqcqz3a072ihkgcl0k629sxch9hk6v6j5lly"; depends=[]; }; ICsurv = derive2 { name="ICsurv"; version="1.0"; sha256="1mbndpy3x5731c9y955wscy76jrxlgv33bf6ldqp65cwyvdgxl86"; depends=[MASS matrixcalc]; }; - IDPSurvival = derive2 { name="IDPSurvival"; version="1.0"; sha256="1v1w0i74b065b4qc302xbdl5df7qx9z8jmbc9cn46fqm1hh2b6d7"; depends=[gtools Rsolnp survival]; }; + ICtest = derive2 { name="ICtest"; version="0.2"; sha256="0pd16cafhx7cfwasbdli0kin83wayn7hil8allpacv9yiinj2bq3"; depends=[GGally ggplot2 ICS ICSNP JADE png Rcpp RcppArmadillo survey]; }; + IDPSurvival = derive2 { name="IDPSurvival"; version="1.1"; sha256="0vd2dkspsq8aqihjs7dqpfb1xk5ydnwqwzhhg142mywgf0zg2fkh"; depends=[gtools Rsolnp survival]; }; IDPmisc = derive2 { name="IDPmisc"; version="1.1.17"; sha256="0nbwdyg9javjjfvljwbp2jl0c6414c11zb2pirmm5pmimaq9vv0q"; depends=[lattice]; }; + IDSpatialStats = derive2 { name="IDSpatialStats"; version="0.2.2"; sha256="0pfvdy82i5w6zrda2022m1v22dv2qsgcj1y7f8hqmaqvqgczizfk"; depends=[]; }; IDTurtle = derive2 { name="IDTurtle"; version="1.2"; sha256="15r806vk5lmvyclsynzq9qr8pgwwkxal1j6xcq6408i8kq1hk3fb"; depends=[]; }; + IDmining = derive2 { name="IDmining"; version="1.0.0"; sha256="112m9dpzq6dl055wf1hhnxqr0rfvm1dv75mbj60fdwlf5q4sgsia"; depends=[dplyr]; }; IFP = derive2 { name="IFP"; version="0.2.1"; sha256="06zyadcr8p6q0c5h9n29yl02ixysdj6lfbn9hfir0bk9hyv9yfyr"; depends=[coda haplo_stats]; }; - IGM_MEA = derive2 { name="IGM.MEA"; version="0.3.0"; sha256="1sxwccysmxv9cv34rgi3s777734a01hmxyr7x32bgykkhjq6wr25"; depends=[emdist ggplot2 gridExtra gtools lattice plyr reshape2]; }; + IGM_MEA = derive2 { name="IGM.MEA"; version="0.3.4.1"; sha256="093c7jx74hl41v6i75qlphshw6gbxn7cl9063f971ilxi4hmsd21"; depends=[emdist ggplot2 gridExtra gtools lattice plyr reshape2]; }; + IHSEP = derive2 { name="IHSEP"; version="0.1"; sha256="1djc5509b5iyi6y0i36h77l6sq1h0w721v2isxqldcqk3gb0bx11"; depends=[lpint Rcpp]; }; + ILS = derive2 { name="ILS"; version="0.1.0"; sha256="18phs1q28mpwvwnzn0hgjxy978f7n4c3p94jxjp0sy3as67hqphp"; depends=[depthTools fda_usc MASS multcomp]; }; IM = derive2 { name="IM"; version="1.0"; sha256="1f1vr5zfqnanc5xmmlfkjkvxwbyyysi3mcvkg95p8r687a7zl0cx"; depends=[bmp jpeg png]; }; + IMFData = derive2 { name="IMFData"; version="0.2.0"; sha256="1mlxpsbyvh1zi8ivdblbd58zfv5hflnknbasz5z8xk9911czrn6p"; depends=[httr jsonlite plyr]; }; + IMIFA = derive2 { name="IMIFA"; version="1.1.0"; sha256="0fxnyzh0403k97ka6ngwsbw9qnf0gnkq33xsb47vrlfx3558g57a"; depends=[abind corpcor e1071 gclus matrixcalc matrixStats mclust MCMCpack mvnfast plotrix Rfast slam viridis]; }; IMIS = derive2 { name="IMIS"; version="0.1"; sha256="09zb48vdj0i3vf8vxrs07xwb9ji27vp2fyvmg6jfq631licsryc2"; depends=[mvtnorm]; }; IMP = derive2 { name="IMP"; version="1.1"; sha256="0ilvgz2bngffyx6ifqqx1snsn6mmq7rx3wg44093yrviaw39qdfv"; depends=[dplyr ggplot2 shiny tidyr]; }; - IMak = derive2 { name="IMak"; version="1.1.1"; sha256="0s1pwpy9538gz108q74ld5azqskix4rk60bmr5qllpcqqhbwhrva"; depends=[]; }; - INLABMA = derive2 { name="INLABMA"; version="0.1-6"; sha256="0rij3y89yyj25xz8r9n8cnq7rg9b7hf0n9nxxrrnm86w3n4r66in"; depends=[Matrix sp spdep]; }; + IMPACT = derive2 { name="IMPACT"; version="0.1.0"; sha256="17m2gqwaqam8wv7214x4hp93imgfzilgm42zx5z21ipypiq6rqfy"; depends=[]; }; + IMak = derive2 { name="IMak"; version="1.1.2"; sha256="19si4hhvi8kddkp2kr1yw2bcw1qkk0i42saklvwk751gdmyzl9p3"; depends=[]; }; + INLABMA = derive2 { name="INLABMA"; version="0.1-8"; sha256="13r89r14xpihfqddwzkhxg4jgxyl59826x2insrall3mj2yffj90"; depends=[Matrix sp spdep]; }; + INSPIRE = derive2 { name="INSPIRE"; version="1.5"; sha256="0938l50yxnb5q628mp874ayx9ybvcjddis20y1hzm5cmlsg0hqhg"; depends=[missMDA]; }; IPMpack = derive2 { name="IPMpack"; version="2.1"; sha256="08b79g5a9maxnxladvc2x2dgcmm427i8p6hhgda3mw2h5qmch2q3"; depends=[MASS Matrix nlme]; }; IPSUR = derive2 { name="IPSUR"; version="1.5"; sha256="0brh3dx7m1rilvr1ig6vbi7p13bfbblgvs8fc114f08d90fczwnq"; depends=[]; }; + IPtoCountry = derive2 { name="IPtoCountry"; version="0.0.1"; sha256="1b10z93mc31cr1c5wxp9xz9cr3jm4n4g5kav09dyallpgw60rskp"; depends=[data_table devtools dtables ggplot2 install_load maps scales]; }; IQCC = derive2 { name="IQCC"; version="0.6"; sha256="0gsnkdl4cfxzq6pm9g4i1g23mxg108j3is4x69id1xn2plf92m04"; depends=[MASS micEcon miscTools qcc]; }; - IRISMustangMetrics = derive2 { name="IRISMustangMetrics"; version="1.0.1"; sha256="08jmkncz5nyjrcb07fgnv2siws6ihd1nzssq99bv5ab24v3krr0w"; depends=[IRISSeismic pracma RCurl seismicRoll signal stringr XML]; }; - IRISSeismic = derive2 { name="IRISSeismic"; version="1.0.7"; sha256="00qqg97kkc7yas7qiv6280rbjjdvmrp4w62kj0fps727hfbr6r51"; depends=[pracma RCurl seismicRoll signal stringr XML]; }; + IRATER = derive2 { name="IRATER"; version="0.0.1"; sha256="0jxdvjmnmangbqy3ibb5qrj9jz3wrzs0wa1r2gjk4v8vsbk0ipcf"; depends=[coda lattice plyr R2admb]; }; + IRISMustangMetrics = derive2 { name="IRISMustangMetrics"; version="2.0.4"; sha256="0in50k366yjqgpgzh73bfb8v6cqdrr68b8xvsa1jmi2f438j3nrx"; depends=[dplyr IRISSeismic pracma RCurl seismicRoll signal stringr XML]; }; + IRISSeismic = derive2 { name="IRISSeismic"; version="1.4.1"; sha256="0h2r1yijc00va48zhvb9b0mnmw9b1anfhs9v8gjqyv4dy6l8lrif"; depends=[pracma RCurl seismicRoll signal stringr XML]; }; IRTShiny = derive2 { name="IRTShiny"; version="1.1"; sha256="0izw7mk78b9ab2p6jb5vph80cjbaq0m6xvyw8xlzypa3j3ns17sv"; depends=[beeswarm CTT ltm psych shiny shinyAce]; }; + IRTpp = derive2 { name="IRTpp"; version="0.2.6.1"; sha256="10shzyiawk65pikawvhg58kx6fpvs1dazqmfjf3rfvly1lc0px1q"; depends=[FactoMineR MASS mvtnorm numDeriv Rcpp]; }; + IRdisplay = derive2 { name="IRdisplay"; version="0.4.4"; sha256="19l4flvik8zw2pany8dpjbrh0bji6bag6pmclgwqnq80532hnfp8"; depends=[repr]; }; ISBF = derive2 { name="ISBF"; version="0.2.1"; sha256="12mk4d0m5rk4m5bskkkng5j6a9dzh8l1d74wh8lnamq7kf9ai9if"; depends=[]; }; ISDA_R = derive2 { name="ISDA.R"; version="1.0"; sha256="0w6p2iy6s7fy8pw2cf4b5zhqcgjjwd5bkax1aqflaaj4ppmfx64v"; depends=[scatterplot3d]; }; ISLR = derive2 { name="ISLR"; version="1.0"; sha256="0gmhvsivhpq3x8a240lgcbv1qzdgf6wxms4svak1501clc87xc6x"; depends=[]; }; - ISOcodes = derive2 { name="ISOcodes"; version="2016.03.15"; sha256="05dbmah7daxqmmljb4hx2f2pz2yii3k9mpg6p30fbs5rkn84pfkw"; depends=[]; }; - ISOpureR = derive2 { name="ISOpureR"; version="1.0.18"; sha256="1hh23d4dzhkqli68466gs2n6zhlhwjl53dvrpqvl6ag6i4x974ag"; depends=[futile_logger Rcpp RcppEigen]; }; + ISOcodes = derive2 { name="ISOcodes"; version="2016.12.09"; sha256="1xsazjipx468hyqivdkskcqiipmysdzzrswh4yh6p41qbf1ahp6a"; depends=[]; }; + ISOpureR = derive2 { name="ISOpureR"; version="1.0.21"; sha256="093wvnh7fv9shvssgl8slfg394f0v0jazj4jpihhaqkfchq1vryy"; depends=[futile_logger Rcpp RcppEigen]; }; ISOweek = derive2 { name="ISOweek"; version="0.6-2"; sha256="1f1h8pgjaa14cvaj8ldl87b4vslxwvyfj46m0hkylwp73sv3g2mm"; depends=[stringr]; }; + ISR3 = derive2 { name="ISR3"; version="0.98"; sha256="0mmpdl9ndlj9i0k3zl7ja0g7y9pm67igw925ld5qnz7a36plygxs"; depends=[]; }; ISwR = derive2 { name="ISwR"; version="2.0-7"; sha256="1rd1wrvl8wlc8ya5lndk74gnfvj9wp29z8617v3kbf32gqhby7ng"; depends=[]; }; ITEMAN = derive2 { name="ITEMAN"; version="1.0"; sha256="06blkqxdvdfynp8vl02rqbg7ya62bq1izlqjda1p8zpr689jinzk"; depends=[car ggplot2 polycor]; }; + ITGM = derive2 { name="ITGM"; version="0.4"; sha256="0vsf3hnqfz029n1skm54s9ynd8alqag963bircqg0psgl9x6jhvi"; depends=[data_table Fgmutils gsubfn plyr sqldf]; }; IUPS = derive2 { name="IUPS"; version="1.0"; sha256="01pv03ink668fi2vxqybli0kgva13gxhqfdxkwz6qk5rnpzwvf5w"; depends=[boot Matching R2jags]; }; IalsaSynthesis = derive2 { name="IalsaSynthesis"; version="0.1.6"; sha256="15iwywvzhgiyigl8f488b7ra89rz0a7ymfsdgdlqfls3fmld7b4a"; depends=[testit]; }; Iboot = derive2 { name="Iboot"; version="0.1-1"; sha256="1fahh86kgv2axj2qg14n87v888sc0kb567s6zr3fh5zv361phwkq"; depends=[]; }; @@ -1074,78 +1345,107 @@ in with self; { ImpactIV = derive2 { name="ImpactIV"; version="1.0"; sha256="1bb6gw1h15hscr71hy779k2x5ywzx63ylim3hby02d7fnnj46p58"; depends=[nnet]; }; ImportExport = derive2 { name="ImportExport"; version="1.1"; sha256="12i9mwspk59zicn1mn21xrs90c8dqxm1q7alqbzscgkpf3xbjrnn"; depends=[chron gdata haven Hmisc RODBC xlsx]; }; InPosition = derive2 { name="InPosition"; version="0.12.7"; sha256="1f7xb2kxikmja4cq7s1aiwhdq27zc6hghjbliqqpm8ci8860lb8p"; depends=[ExPosition prettyGraphs]; }; - InSilicoVA = derive2 { name="InSilicoVA"; version="1.1"; sha256="0zm0q82j5mdpjy7pa0dxx3291dh01q9c21gzjripmggb96fsg39d"; depends=[coda ggplot2 rJava]; }; + InSilicoVA = derive2 { name="InSilicoVA"; version="1.1.4"; sha256="16978c1bdxbp3xxrcnx8yyar1dd292a5i43qhcymdp7nnprd6gc7"; depends=[coda ggplot2 rJava]; }; + IncucyteDRC = derive2 { name="IncucyteDRC"; version="0.5.4"; sha256="1k7jqcyx5n4my5rbyfa693ganbk91xganyagq8x8szli9h1491ii"; depends=[cowplot dplyr drc DT ggplot2 magrittr shiny tidyr XML]; }; + IndTestPP = derive2 { name="IndTestPP"; version="1.0"; sha256="1ywl35k2syv46pz6ap5sjkynapqj04aq197czspqky0pvrq7ldr1"; depends=[]; }; IndependenceTests = derive2 { name="IndependenceTests"; version="0.2"; sha256="04qfh2mg9xkfnvp6k7w1ip4rb663p3pzww9lyprcjvr3hcac7gqa"; depends=[xtable]; }; InfDim = derive2 { name="InfDim"; version="1.0"; sha256="0rh3ch0m015xjkxy08vf9pc6q7azjc6sgicd2j6cwh611pqq39wq"; depends=[]; }; InferenceSMR = derive2 { name="InferenceSMR"; version="1.0"; sha256="13d3v8kyk6br33659jgql6j1nqmnd8zszqrwfw2x3khkiqzgdmhk"; depends=[survival]; }; - Information = derive2 { name="Information"; version="0.0.7"; sha256="1gri1szvwj4c27s7niz5ss8lws16q3sxxgaz7p9grcbhd5ky5apg"; depends=[data_table doParallel foreach ggplot2 iterators plyr]; }; - InformationValue = derive2 { name="InformationValue"; version="1.2.1"; sha256="0bbsix2w834jd64d1mgsjlbawrc73yykzd3zf5lwkfr5gka4k1ij"; depends=[ggplot2]; }; + InfiniumPurify = derive2 { name="InfiniumPurify"; version="1.3.1"; sha256="0yqah4rwpishas0xyv5a7cn4v18brj33cd7f494g21b9brggafq1"; depends=[matrixStats]; }; + InfoTrad = derive2 { name="InfoTrad"; version="1.1"; sha256="072280famiq6455mc3q00k9xw1jb534308am875ys1bplci63521"; depends=[]; }; + Information = derive2 { name="Information"; version="0.0.9"; sha256="0pszwzj3r7vdvdsy9w1qz95zxp7y2bsyg36b58mm4qcvcvymd4kn"; depends=[data_table doParallel foreach ggplot2 iterators plyr]; }; + InformationValue = derive2 { name="InformationValue"; version="1.2.3"; sha256="1b5g2wyp7x5cdhmf4325n3q7afa6i352lh80j28c8s4356pr3w9j"; depends=[data_table ggplot2]; }; + InformativeCensoring = derive2 { name="InformativeCensoring"; version="0.3.4"; sha256="145k4hggymra2jnxkcck795xk280yyldfzh9ls2irnsxmxfszr52"; depends=[boot dplyr survival]; }; + Infusion = derive2 { name="Infusion"; version="1.0.0"; sha256="1n0wp05xzr1sbd1a5p36d7f9lg7bhp1yha71zg6h5zjdzpsjjh1a"; depends=[blackbox geometry Matrix mvtnorm numDeriv proxy rcdd Rmixmod spaMM viridis]; }; + InspectChangepoint = derive2 { name="InspectChangepoint"; version="1.0.1"; sha256="1wirdbz4v7hk7znpjhw9j3l596lmfcrlr4wxayw7klbbdhcwq5qs"; depends=[MASS]; }; + IntClust = derive2 { name="IntClust"; version="0.0.2"; sha256="1n0ywickky1w5m8swfidiprdnkrv0mrh9z5294bimxj5ppi1yl8v"; depends=[a4Core ade4 analogue Biobase cluster e1071 FactoMineR ggplot2 gplots gridExtra gtools limma lsa plotrix pls plyr prodlim SNFtool]; }; IntLik = derive2 { name="IntLik"; version="1.0"; sha256="13ww5bsbf1vnpaip0w53rw99a8hxzziibj7j66cm31jmi8l6fznf"; depends=[maxLik]; }; + IntNMF = derive2 { name="IntNMF"; version="1.1"; sha256="0bw6ycf7zrbfh8dfpgva1a51nazkvwlq7pxdhpp1j1mhabwm2nq2"; depends=[cluster InterSIM MASS mclust NMF]; }; + IntegrateBs = derive2 { name="IntegrateBs"; version="0.1.0"; sha256="1pkx4wpahd1sabzx55law3710x3vbh9yi6kii8gs2xfq3cb1llmq"; depends=[]; }; IntegratedJM = derive2 { name="IntegratedJM"; version="1.4"; sha256="1r42zzrm5cmqlaxxzla0fwf5l34qjil9ndmv2cdwzw1kbqp84qz4"; depends=[Biobase ggplot2 nlme]; }; - InterSIM = derive2 { name="InterSIM"; version="2.0"; sha256="0vzhrm02m44ckxla0q868nwskkldd5p008xfi3mgp5mh5iqgqpxv"; depends=[MASS NMF]; }; - InterVA4 = derive2 { name="InterVA4"; version="1.7.1"; sha256="0qdfbvh6ab5w3ym1mydfq0cjimj8ydnh01aw69grhc4is43vr667"; depends=[]; }; + IntegratedMRF = derive2 { name="IntegratedMRF"; version="1.1.5"; sha256="0f2jsf6lh1nrrfqdgq72jqan94f81cr2pckfcjn86c933gjlq4bm"; depends=[bootstrap caTools ggplot2 limSolve Rcpp]; }; + InterSIM = derive2 { name="InterSIM"; version="2.1"; sha256="092fw918qq8pahyxxznabkdfrb8700bpkkq96zj8ihpkx2ngkxln"; depends=[MASS NMF]; }; + InterVA4 = derive2 { name="InterVA4"; version="1.7.3"; sha256="1ql9mdl9q7n7kj4c6wfgjfi87bp7n30knbxg9way7ifgr2yqn8bb"; depends=[]; }; Interact = derive2 { name="Interact"; version="1.1"; sha256="1g9zhafdpr7j410bi8p03d8x9f8m3n329x8v01yk15f65fp7pl1d"; depends=[]; }; InteractiveIGraph = derive2 { name="InteractiveIGraph"; version="1.0.6.1"; sha256="0srxlp77xqq0vw2phfv7zcnqswi2i5nzkpqbpa5limqx00jd12zy"; depends=[igraph]; }; Interatrix = derive2 { name="Interatrix"; version="1.1.1"; sha256="1ljxgiia0y8wv1rlm5brd0yvs1r7r5wyrs6nykmwrwwya4k34mpz"; depends=[MASS tkrplot]; }; Interpol = derive2 { name="Interpol"; version="1.3.1"; sha256="1598lnnrcxihxysdljphqxig15fd8z7linw9byjmqypwcpk6r5jn"; depends=[]; }; Interpol_T = derive2 { name="Interpol.T"; version="2.1.1"; sha256="1fbsl1ypkc65y6c0p32gpi2a2aal8jg02mclz7ri57hf4c1k09gz"; depends=[chron date]; }; - InvariantCausalPrediction = derive2 { name="InvariantCausalPrediction"; version="0.4-1"; sha256="0gv1a78cxha6nvx1x234xpyc80wzl27650j79cs26m2pmg86z7kn"; depends=[glmnet mboost]; }; + InterpretMSSpectrum = derive2 { name="InterpretMSSpectrum"; version="0.83"; sha256="1iwhgfb7z9pbnwzn626v0w0ycfjlhpaiv1yzm062samvr0lqiyrh"; depends=[enviPat plyr Rdisop]; }; + InvariantCausalPrediction = derive2 { name="InvariantCausalPrediction"; version="0.6-1"; sha256="16qlskxszpi24qsdl821n72pzdvmf1gg7lnlwyhyzhzzkh9az1pd"; depends=[glmnet mboost]; }; InventorymodelPackage = derive2 { name="InventorymodelPackage"; version="1.0.2"; sha256="1w35idsagl9v93ci3qmal3xbf11sy6h1k7xnv25c59ivfnpjpkva"; depends=[e1071]; }; - IsingFit = derive2 { name="IsingFit"; version="0.3.0"; sha256="0imgj3g6sankzmycjkzzz3bgai3jjycgsinhs5zy9k4vgqjg27d6"; depends=[glmnet Matrix qgraph]; }; + IrishDirectorates = derive2 { name="IrishDirectorates"; version="0.1.0"; sha256="0741093vq1cqs9zh95fc6kwpd4a4r4yxvmcnp7f7j5xxyqy1h3xz"; depends=[]; }; + IsingFit = derive2 { name="IsingFit"; version="0.3.1"; sha256="1prdzzp15klkdy72379bjksdgxr15nk16pqm35w95341cddxchc7"; depends=[glmnet Matrix qgraph]; }; IsingSampler = derive2 { name="IsingSampler"; version="0.2"; sha256="16vwb5pcqjvvsk9wsgj10mzhgh72iz1q6n8nmkva6y1l7xv54c8w"; depends=[magrittr nnet plyr Rcpp]; }; Iso = derive2 { name="Iso"; version="0.0-17"; sha256="0lljc99sdzdqj6d56qbsggibr6pkdwkh821bj70ianikyvmdc1y0"; depends=[]; }; IsoCI = derive2 { name="IsoCI"; version="1.1"; sha256="0r7ksfic6p2v95c953s4gbzzclk4ldxysm8szb8xba1w0nx2izil"; depends=[KernSmooth]; }; IsoGene = derive2 { name="IsoGene"; version="1.0-24"; sha256="0flm0mszankvl3aizwsazyhvz2xkr4gfqiqywpc0r1swqj19610r"; depends=[affy Biobase ff Iso xtable]; }; - IsotopeR = derive2 { name="IsotopeR"; version="0.5.2"; sha256="1ny9drxhp547d9dhdlq78q3nqmril77x1ka6q809j9sklmpvx42q"; depends=[colorspace ellipse fgui plotrix runjags]; }; - JADE = derive2 { name="JADE"; version="1.9-93"; sha256="0ryj7yiwgrz3cq8q5x6m2srlxxbm26gzs191gs4z9sbjk91vgcnp"; depends=[clue]; }; - JAGUAR = derive2 { name="JAGUAR"; version="3.0.0"; sha256="0y4h2d4aw546ldwxs7rhpyb7hsby75h53b9vbkqz49105b8zai3j"; depends=[lme4 plyr Rcpp RcppArmadillo RcppProgress reshape2]; }; + IsoSpecR = derive2 { name="IsoSpecR"; version="1.0.3"; sha256="1cnkzc29k0inz6kdn77l0ymzjgf1hid8jza7nla4ym2s0gidgdyf"; depends=[Rcpp]; }; + IsoplotR = derive2 { name="IsoplotR"; version="0.10"; sha256="1hlhj36bmxlj8y83kmis0knwgfn0s8dab1nw0715d2vhh74g4xmp"; depends=[MASS]; }; + IsoriX = derive2 { name="IsoriX"; version="0.4-1"; sha256="0j6lb7kvxw1lywq0jg8d26936521pyw5apz9k9cf34pb3hsa5qm2"; depends=[latticeExtra numDeriv proxy RandomFields raster rasterVis sp spaMM]; }; + IsotopeR = derive2 { name="IsotopeR"; version="0.5.4"; sha256="0xgha5alh5y5qfz00rl73q4xlamnmrwij7kckljmy6zgrlrdnl6x"; depends=[colorspace ellipse fgui plotrix runjags]; }; + JADE = derive2 { name="JADE"; version="2.0-0"; sha256="15bcq6r2iargxkb0pdbqkwrrn2rs7hc3y5fxjm5mb377513sdz5j"; depends=[clue]; }; + JAGUAR = derive2 { name="JAGUAR"; version="3.0.1"; sha256="0lyc8biwj9yir1i06klp2jkb31mnzwp226aw7pwabkprfhqgfmqd"; depends=[lme4 plyr Rcpp RcppArmadillo RcppProgress reshape2]; }; JASPAR = derive2 { name="JASPAR"; version="0.0.1"; sha256="0wiyn7cz45hwy9zkvacx28zdrg78q6715cg4r9xgcb39q25s0dcy"; depends=[gtools]; }; JBTools = derive2 { name="JBTools"; version="0.7.2.9"; sha256="0bynqn3daqgmi3l9asy34mfwyfjkn35k465dfqqi3xwx6cbzlg5k"; depends=[colorspace foreach gplots plotrix]; }; JGEE = derive2 { name="JGEE"; version="1.1"; sha256="078348n623hlyc3n9yh67vv5acsnxapmbwybvrb1i7kawmqw5msi"; depends=[gee MASS]; }; JGL = derive2 { name="JGL"; version="2.3"; sha256="1351iq547ln06nklrgx192dqlfnn03hkwj3hrliqzfbmsls098qc"; depends=[igraph]; }; JGR = derive2 { name="JGR"; version="1.7-16"; sha256="0iv659mjsv7apzpzvmq23w514h6yq50hi70ym7jrv948qrzh64pg"; depends=[iplots JavaGD rJava]; }; - JM = derive2 { name="JM"; version="1.4-2"; sha256="1rsfj7xm5g524xf6v2frkbn3l3bfxn0lrv0qjc81145qn626ybw2"; depends=[MASS nlme survival]; }; - JMbayes = derive2 { name="JMbayes"; version="0.7-8"; sha256="0pmwlip6bc4757amdsx3j6lz0mkxgi42qvlkncwks2nyqq9nfhn2"; depends=[MASS nlme survival]; }; + JM = derive2 { name="JM"; version="1.4-5"; sha256="1v3aiz5882kwg8iagmb309i212ndksi6l8bgdnq6j77lixc3a87b"; depends=[MASS nlme survival]; }; + JMbayes = derive2 { name="JMbayes"; version="0.8-0"; sha256="1kay6na8mb7k2r4alpzm2lb8phjqr3a05qfpv4ydd16rbjrlfbph"; depends=[MASS nlme survival]; }; JMdesign = derive2 { name="JMdesign"; version="1.1"; sha256="0w5nzhp82g0k7j5704fif16sf95rpckd76jjz9fbd71pp2d80vlh"; depends=[]; }; JOP = derive2 { name="JOP"; version="3.6"; sha256="1kpb1dy2vm4jgzd3h0qgdw53nfp2qi74hgq5l5inxx4aayncclk7"; depends=[dglm Rsolnp]; }; + JOUSBoost = derive2 { name="JOUSBoost"; version="1.0.0"; sha256="1m4h0jsmnk1sr8h94s7kndmsl6l8rlq65fh17slbadppfgyb1nfd"; depends=[Rcpp rpart]; }; JPEN = derive2 { name="JPEN"; version="1.0"; sha256="12rvp5bmlkwyr1gg336k655hp09gym0d2wwry70c1rz30x1sf2zs"; depends=[mvtnorm]; }; JPSurv = derive2 { name="JPSurv"; version="1.0.1"; sha256="11hfji0nyfmw1d7y2cijpp7ivlv5s9k8g771kmgwy14wflkyf7g2"; depends=[]; }; - JRF = derive2 { name="JRF"; version="0.1-3"; sha256="1ljgmvsq8mjl01kl82g5qzp857wjm2zlg9qz4zgjqbawbs4p4s72"; depends=[]; }; + JRF = derive2 { name="JRF"; version="0.1-4"; sha256="1xpvscn9iawwa0vfh3kfwzdni436bf42nvm18b8abh033ljvqpij"; depends=[]; }; + JSM = derive2 { name="JSM"; version="0.1.0"; sha256="075zkh732cfrnjmd90pa84yxm8vg230b5r1m1j2b27xxrgng1lgv"; depends=[nlme Rcpp RcppEigen statmod survival]; }; + JWileymisc = derive2 { name="JWileymisc"; version="0.2.1"; sha256="0cli204f1b5hj3qz62fycww12a6dv7xxxszkxgrxirw6mpdf858c"; depends=[cowplot data_table devtools foreach ggplot2 Hmisc lavaan MASS mgcv mice multcompView plyr]; }; JacobiEigen = derive2 { name="JacobiEigen"; version="0.2-2"; sha256="1q6wqxlhslip14544px1aq446m77a8s0chvhpc19im014w4g930v"; depends=[Rcpp]; }; JavaGD = derive2 { name="JavaGD"; version="0.6-1"; sha256="13n6xzbbjgd0bpwv2xgm3dlscg87wh32q6fcq50kk6byp6yv05sc"; depends=[]; }; + Jdmbs = derive2 { name="Jdmbs"; version="1.0"; sha256="1mhr1z6427lcm018pmllmhhsbnxa7cbmp9a5bjxb5n2zy1j71623"; depends=[igraph rmarkdown]; }; Jmisc = derive2 { name="Jmisc"; version="0.3.1"; sha256="1szn29dng54l2xmrm6pg3d5rmwdc1ks23vsnsmplnr5rx7yj002s"; depends=[]; }; JoSAE = derive2 { name="JoSAE"; version="0.2.3"; sha256="0b1jwplds5b7z15v6bvqj1rbn7zxpgvh2ykhqplxzv4mlaw6i0li"; depends=[nlme]; }; Johnson = derive2 { name="Johnson"; version="1.4"; sha256="12ajcfz5mwxvimv8nq683a2x3590gz0gnyviviyzf5x066a4q0lj"; depends=[]; }; JohnsonDistribution = derive2 { name="JohnsonDistribution"; version="0.24"; sha256="00211pa2wn4bsfj6wfl9q9g123cp8iz3kxc17pw9q65j9an4sr0m"; depends=[]; }; + JointModel = derive2 { name="JointModel"; version="1.0"; sha256="1zgs5c7saqyqxvxmhw5sxy5w67abq344aid6igw1da05bfy2az6h"; depends=[lme4 statmod survival]; }; JointRegBC = derive2 { name="JointRegBC"; version="0.1.1"; sha256="0w7ygs3pvlqkkb2x20kv20kda3gz7cn6zgrkg30nhjxp318d76ab"; depends=[MASS nlme survival]; }; Julia = derive2 { name="Julia"; version="1.1"; sha256="0i1n150d89pkds7qyr0xycz6h07zikb2y07d5fcpaqs4446a8prg"; depends=[]; }; KANT = derive2 { name="KANT"; version="2.0"; sha256="169j72pmdkcj6hv8qgmc02aps0ppvvl1vnr1hzrb1gsf7zj7bs3y"; depends=[affy Biobase]; }; KATforDCEMRI = derive2 { name="KATforDCEMRI"; version="0.740"; sha256="1k8fihd9m26k14rvc5d5x0d9xc3mh8d49hs64p55np1acqfhg2sy"; depends=[locfit matlab R_matlab]; }; KERE = derive2 { name="KERE"; version="1.0.0"; sha256="1b16cb3ihcsp9jffmd45sd7ia4pibikmj62ad344wmq22q4fpliy"; depends=[]; }; - KFAS = derive2 { name="KFAS"; version="1.2.2"; sha256="06bkmb6gsh4lxjvmb9p5d143f1xkr9r6nlh4jmf9l297xwv35b7w"; depends=[]; }; + KFAS = derive2 { name="KFAS"; version="1.2.5"; sha256="144yiwww0vn309dikhj8irppg021qjy3zi6m6yna14payplnqyxr"; depends=[]; }; KFKSDS = derive2 { name="KFKSDS"; version="1.6"; sha256="1g11f936p554bfxlm4slxhfxki5vqkks1mrbqw4w83v2rcb50f8d"; depends=[]; }; KMDA = derive2 { name="KMDA"; version="1.0"; sha256="0x4kjjdd59wvgg699vrj99wqg3s1qbkbskis1c34xv9b8bzcv94j"; depends=[]; }; KMsurv = derive2 { name="KMsurv"; version="0.1-5"; sha256="0hi5vvk584rl70gbrr75w9hc775xmbxnaig0dd6hlpi4071pnqjm"; depends=[]; }; - KODAMA = derive2 { name="KODAMA"; version="0.0.1"; sha256="199l6y5b98ags5p7jf150v0i0kcdxlsr2q0rgdpz9ra1hw1cjsfb"; depends=[class e1071 plsgenomics]; }; - KOGMWU = derive2 { name="KOGMWU"; version="1.0"; sha256="0nk7vbppimrf01wnxsg2wjpagjrzs6gh3a6jlqy9bdfh0j4fm0kn"; depends=[pheatmap]; }; + KODAMA = derive2 { name="KODAMA"; version="1.4"; sha256="0qzpgj6ljzd8n8vgmf53pmblsmypl86j7njd3pz0d370bxfchsqj"; depends=[Rcpp RcppArmadillo]; }; + KOGMWU = derive2 { name="KOGMWU"; version="1.1"; sha256="0n07wrpmmvxflxpmhkp3gm40xz2w4j0l8dsljhmfiyxcf5y7kq2g"; depends=[pheatmap]; }; KRLS = derive2 { name="KRLS"; version="0.3-7"; sha256="0dx4b68xx3saqlkbpvvrhxjscl7jr5phwqvjywxsp4qxlr3ysl79"; depends=[]; }; + KSD = derive2 { name="KSD"; version="1.0.0"; sha256="0wqmbr51yv7f87pnhph2nrj9y2d5jql2agizcaq6lax23lj6xfb7"; depends=[pryr]; }; KScorrect = derive2 { name="KScorrect"; version="1.2.0"; sha256="1rymzllm97z22xwsn5wbn02c0xp0kfdp73mk9jrk81hfdpd15p4i"; depends=[MASS mclust]; }; + KTensorGraphs = derive2 { name="KTensorGraphs"; version="0.1"; sha256="1hsndxslqgca0ay4q277zjwnwz8bzwfkzz915dgqvjd2v4afrvzx"; depends=[]; }; KappaGUI = derive2 { name="KappaGUI"; version="1.2"; sha256="014d3lshq3avrncd8ydjpn59zalq46v29jrlz3g76wzr96xf5ckr"; depends=[irr]; }; KappaV = derive2 { name="KappaV"; version="0.3"; sha256="13mmfb8ijpgvzfj20andqb662950lp9g25k5b26r5ba65p7nhva7"; depends=[maptools PresenceAbsence rgeos sp]; }; Kendall = derive2 { name="Kendall"; version="2.2"; sha256="0z2yr3x2nvdm81w2imb61hxwcbmg14kfb2bxgh3wmkmv3wfjwkwn"; depends=[boot]; }; KernSmooth = derive2 { name="KernSmooth"; version="2.23-15"; sha256="1xhha8kw10jv8pv8b61hb5in9qiw3r2a9kdji3qlm991s4zd4wlb"; depends=[]; }; KernSmoothIRT = derive2 { name="KernSmoothIRT"; version="6.1"; sha256="1hq4sykddh9sg24qrnccii89nqxmq7hnldhn8wl6y62aj0h1nrqm"; depends=[plotrix Rcpp rgl]; }; - Kernelheaping = derive2 { name="Kernelheaping"; version="1.5"; sha256="0wzvc537nq0b7dx7wy41gx3sq7ghvniwhz41ldi59gkqcah7ax8m"; depends=[evmix ks MASS sp sparr]; }; + KernelKnn = derive2 { name="KernelKnn"; version="1.0.5"; sha256="0qrrndmrpqszwdjn1np63g8inz5l98wzsjf7yx0bc8fp8i0lj4lg"; depends=[Rcpp RcppArmadillo]; }; + Kernelheaping = derive2 { name="Kernelheaping"; version="1.6"; sha256="1xsszbx6srrgzdddr11pfrmfi985amjwngsrbhg8mgn58pwz3yiy"; depends=[ks MASS plyr sp sparr]; }; Kmisc = derive2 { name="Kmisc"; version="0.5.0"; sha256="0pbj3gf0bxkzczl6k4vgnxdss2wmsffqvcf73zjwvzvr8ibi5d95"; depends=[data_table knitr lattice markdown Rcpp]; }; - KoNLP = derive2 { name="KoNLP"; version="0.76.9"; sha256="1q72irl4izb7f5bb99plpqnmpfdq4x4ymp4wm2bsyfjcxm649ya8"; depends=[hash rJava Sejong stringr tau]; }; - KoulMde = derive2 { name="KoulMde"; version="1.0"; sha256="0dz13j24kyvr8kxs5lyvbjxj8l4i8h4il16qjn7hdnmi39g4khr4"; depends=[]; }; - Kpart = derive2 { name="Kpart"; version="1.1"; sha256="1cyml48i1jvwy4xzymijwraqpnssnkrd81q3m7nyjd5m2czjvihv"; depends=[leaps]; }; + KnapsackSampling = derive2 { name="KnapsackSampling"; version="0.1.0"; sha256="17yzmd11k1n5iy54vbcvpzvkm8ypbl6n1kfi931wwrrcq9y7hg22"; depends=[lpSolve]; }; + KnowBR = derive2 { name="KnowBR"; version="1.1"; sha256="10cnnr110wyzxlmh8w3gfp53dx9jww0bv95rly8rvp5bhrava8y5"; depends=[]; }; + KoNLP = derive2 { name="KoNLP"; version="0.80.1"; sha256="1chj8kv1l405dm0jcsxjjjxx395z05sfxbcc5vxnpbydx7lxa6zy"; depends=[devtools hash rJava RSQLite Sejong stringr tau]; }; + KoulMde = derive2 { name="KoulMde"; version="3.0.0"; sha256="01mczlrdrfwdp2cj10kdqay3qpg8xf2v7vym62pll9l8n595snrl"; depends=[Rcpp]; }; + Kpart = derive2 { name="Kpart"; version="1.2.0"; sha256="14c6ngc37xpxy5pd5jishaqz6aahky32p0x5bfsn5zirdahlphsa"; depends=[leaps]; }; + KraljicMatrix = derive2 { name="KraljicMatrix"; version="0.1.1"; sha256="1r9gs7k12djg56bifrpxbkj1kbcqgdpyqnjw5829gsx8881j2z9d"; depends=[dplyr ggplot2 tibble]; }; KrigInv = derive2 { name="KrigInv"; version="1.3.1"; sha256="0fcfv2vl572l8qp1ilhjai6zrw15bf1z41qm7xlfspfbj611ga7k"; depends=[DiceKriging pbivnorm randtoolbox rgenoud]; }; - L1pack = derive2 { name="L1pack"; version="0.3"; sha256="0lhixnfb2ga830z91z51r970l5s5qpavbwcmk1pi80180n11kv4i"; depends=[]; }; - LANDD = derive2 { name="LANDD"; version="1.0.0"; sha256="1w3y3dwq2rwf6arfgb8s70vzc3n7wbkkjanyn8iabk97f3i12r0i"; depends=[BH doParallel fdrtool foreach GGally ggplot2 GOSemSim GOstats igraph intergraph Matrix modeest Rcpp]; }; - LARF = derive2 { name="LARF"; version="1.3"; sha256="0crg89d377wkga0bc42y8bfk6chg06afchhgnab6q4dirwv9360q"; depends=[]; }; + L1pack = derive2 { name="L1pack"; version="0.38"; sha256="1my9fbqry1h3s1dwy8ia6rzkdp8map3n01vfwp0ddx4bw1mz2ffv"; depends=[]; }; + LANDD = derive2 { name="LANDD"; version="1.1.0"; sha256="13szkww9nw8zywfrqd8mwgj9csgragm0bx8ia52rcpakpc3hv3hx"; depends=[BH doParallel fdrtool foreach GGally ggplot2 GOSemSim GOstats igraph intergraph Matrix modeest mvtnorm pROC Rcpp]; }; + LARF = derive2 { name="LARF"; version="1.4"; sha256="1sqib7smgjacn07ishwls1nlbvcb6fpp1vhrjwf9g4xf9jk30i8h"; depends=[Formula]; }; + LBSPR = derive2 { name="LBSPR"; version="0.1.0"; sha256="1wiv0y2cbvxxcm9ywklp874d2v5412xw1p2v2rx90zlaq55ln7gv"; depends=[dplyr ggplot2 gridExtra plotrix RColorBrewer Rcpp tidyr]; }; LCA = derive2 { name="LCA"; version="0.1"; sha256="14nhx2fs18558zljnw56mdz3qx30v394llhzswxhznjfiiqc9z5h"; depends=[]; }; LCAextend = derive2 { name="LCAextend"; version="1.2"; sha256="1y9azq9v42a3z5fq6gj8js89qblb2z93k4mg4jmw0wgkyv6mysfc"; depends=[boot kinship2 mvtnorm rms]; }; + LCF = derive2 { name="LCF"; version="1.6-6"; sha256="1pcm1fdf0s2ygd425h2yi3j4r41zwi2bq2xsc20ymzq8lxq7d4rb"; depends=[quadprog]; }; LCFdata = derive2 { name="LCFdata"; version="2.0"; sha256="1x3vbr6hdviqvd6dxn1kb449g0q5zkfmjsmr5nxd2g82p69lv3xm"; depends=[]; }; LCMCR = derive2 { name="LCMCR"; version="0.4.1"; sha256="1pn11a0h4986wvllkpspymvh1qyi5vhpcz0qg7wa32jbla9is87s"; depends=[]; }; LDAvis = derive2 { name="LDAvis"; version="0.3.2"; sha256="1y9wd379rfv3rd3f65ll21nvh6i8yafvv11f8gw8nn06194dgfzg"; depends=[proxy RJSONIO]; }; @@ -1153,9 +1453,12 @@ in with self; { LDPD = derive2 { name="LDPD"; version="1.1.2"; sha256="1khdx8vwlpliyjc4sxcdiywbxl8lc9f5s3457vcip1j8dv537lbm"; depends=[MASS nleqslv]; }; LDRTools = derive2 { name="LDRTools"; version="0.2"; sha256="0k4j3l21n8b3nvhmfjhwhs3klw09a0dz6cl6gmi2yx7jr21ar6xc"; depends=[]; }; LDcorSV = derive2 { name="LDcorSV"; version="1.3.1"; sha256="0i4npl90mkj8vry6ckq8bc4ydbl44vxichgsxyn80r6k9i71yl67"; depends=[MASS]; }; - LDheatmap = derive2 { name="LDheatmap"; version="0.99-1"; sha256="1bj42chw1xyf8yg6cfv9p4yzsggng7zy6wrw6q22559pwm6c6vr0"; depends=[genetics]; }; + LDheatmap = derive2 { name="LDheatmap"; version="0.99-2"; sha256="0n80l4wl9rs4ps8h2bjpar5nidq7bg05d6675wiwanx24q6fc0bs"; depends=[chopsticks genetics]; }; LDtests = derive2 { name="LDtests"; version="1.0"; sha256="1jwqr7zlp9hv7vw8xp80xvrwbdv796wjgr914v393wfa07j5wbd1"; depends=[]; }; + LEANR = derive2 { name="LEANR"; version="1.4.9"; sha256="053xy13ys5hibafdnbkwqdk36hw7dhanp4frfacpfpn5f9nfh95r"; depends=[foreach igraph]; }; + LEAP = derive2 { name="LEAP"; version="0.2"; sha256="1yrhanxvr7krvllqzv17qkc4wvmd7mgl57am8sn53773dbfipfc4"; depends=[]; }; LEAPFrOG = derive2 { name="LEAPFrOG"; version="1.0.7"; sha256="0z9ahkk4qzc45h1r806frv9cd84vvshvn5mr84gx7qdxljfkfq6h"; depends=[alabama MASS]; }; + LEGIT = derive2 { name="LEGIT"; version="1.0.0"; sha256="0j15z2krj7b1939vrvjhcr3aw5crjdrvn6llzzrkibrh71m4dscq"; depends=[formula_tools pROC]; }; LFDR_MLE = derive2 { name="LFDR.MLE"; version="1.0"; sha256="11vy6gg2x98s1y8a5ns9vcd61gw8ax1lhn4lvicdjbd1lg18nm83"; depends=[]; }; LGEWIS = derive2 { name="LGEWIS"; version="0.2"; sha256="0aqvj6vphg33jfyfkj0zkdbp60a94jlc1vcsba2nyywc54qm9wjh"; depends=[CompQuadForm geeM pls SKAT]; }; LGRF = derive2 { name="LGRF"; version="1.0"; sha256="1kdx6y55aa9n6v43zfz6jk8amvvxbx79sqm1jx4ihgkpgcdglan7"; depends=[CompQuadForm geepack SKAT]; }; @@ -1167,10 +1470,11 @@ in with self; { LIStest = derive2 { name="LIStest"; version="2.1"; sha256="1gk253v3f1jcr4z5ps8nrqf1n7isjhbynxsi9jq729w7h725806a"; depends=[]; }; LLSR = derive2 { name="LLSR"; version="0.0.2.0"; sha256="0nxp1sfnhgf0iqfhwqvr7a0mvs3swsj2l0shcyrb3zliyd23g5ax"; depends=[digest ggtern rootSolve svDialogs XLConnect]; }; LMERConvenienceFunctions = derive2 { name="LMERConvenienceFunctions"; version="2.10"; sha256="08jz0i7sv7gn3bqckphbmnx0kc6yjnfvi06iyf7pcdzjaybxhj06"; depends=[fields LCFdata lme4 Matrix mgcv rgl]; }; - LMest = derive2 { name="LMest"; version="2.2"; sha256="0ivsqc89zi6dxhkjnqakvm4da3vpn03lbid9m2aklf9b5jk06247"; depends=[MASS MultiLCIRT]; }; + LMest = derive2 { name="LMest"; version="2.3"; sha256="0jgfdkzx8zhfjsmx828j1x1dmikqhdpgpqzr7nq8zyr4805l67xx"; depends=[MASS MultiLCIRT]; }; + LNIRT = derive2 { name="LNIRT"; version="0.1.0"; sha256="0szcdp9vl1mifb3ybwi836xif7b57vk2jqp0zcadkfardjpc7pd0"; depends=[MASS]; }; LOGICOIL = derive2 { name="LOGICOIL"; version="0.99.0"; sha256="1wgg7kigzzk5ghjn3hkjf1bb8d6mvjfmkwq64phri5jpxd742ps9"; depends=[nnet]; }; LOGIT = derive2 { name="LOGIT"; version="1.3"; sha256="1nx9ycrys0p08xr1n7bqgn47k5wz1zbp6w5pwsqk5c6f6did2rs1"; depends=[caret e1071 ggplot2 MASS pROC reshape]; }; - LOST = derive2 { name="LOST"; version="1.1"; sha256="19ar85dykbz0jlzbhlm3pcpffj4cizc6sj3gn93qdvpxkp64jfq9"; depends=[e1071 gdata MASS miscTools pcaMethods shapes]; }; + LOST = derive2 { name="LOST"; version="1.2"; sha256="1ymdhd2iayqyf7kvvcc234bslxn1wdds54m1bi234g1f4ljj1qv8"; depends=[e1071 gdata MASS miscTools pcaMethods shapes]; }; LPCM = derive2 { name="LPCM"; version="0.45-0"; sha256="15gpb59556s28npdsw1r821rld7b11y1m2m97m320n9k0z4vbk3i"; depends=[]; }; LPM = derive2 { name="LPM"; version="2.6"; sha256="0fr84l4qxr1ckjafw0i8g6fn74g8qavcs218g3wa03ckab0y98ps"; depends=[fracdiff MASS QRM]; }; LPR = derive2 { name="LPR"; version="1.0"; sha256="16kmfm6p7cwnzpd054ik0cy0ipif6zssdfyxyfm0cijz8z4z40x7"; depends=[doParallel foreach glmnet iterators lattice Matrix slam]; }; @@ -1182,31 +1486,39 @@ in with self; { LRcontrast = derive2 { name="LRcontrast"; version="1.0"; sha256="0fs06p853r42nws2camvs87py39hb1ssxhfm6d5n9kkq81snfx4q"; depends=[DoseFinding]; }; LS2W = derive2 { name="LS2W"; version="1.3-3"; sha256="0pdsv7ld0j116rh94m5y1i2mwrzc80fqxmc6ykc51i1sj6ws3i5k"; depends=[wavethresh]; }; LS2Wstat = derive2 { name="LS2Wstat"; version="2.0-3"; sha256="0wkh1a6xbp3qg5favxsj166jcgdza16zki675gswxckana6s4is7"; depends=[geoR LS2W matrixStats RandomFields spdep]; }; - LSAfun = derive2 { name="LSAfun"; version="0.5"; sha256="1f4bv7c7y0ydq2xddr1y4mhp8i9xnjbndvmqnpkvlj702dx63rdx"; depends=[lsa rgl]; }; + LSAfun = derive2 { name="LSAfun"; version="0.5.1"; sha256="0wj2j53jizg014sppag9zbs5hzc3mvpg1fx1s7l4ff6rabhgvlff"; depends=[lsa rgl]; }; + LSAmitR = derive2 { name="LSAmitR"; version="1.0-0"; sha256="18rpvbiq3vqdcxzbx15x16y4hwdk050fk0wpccwcdgzlf79fjv6f"; depends=[Hmisc lme4]; }; LSC = derive2 { name="LSC"; version="0.1.5"; sha256="1nlnwqb24sbgvl96azh8a833ij5xknjr2wr8shs59lm2n63a3ql9"; depends=[fields gam LICORS Matrix RColorBrewer]; }; LSD = derive2 { name="LSD"; version="3.0"; sha256="069p33aw6iwikp82b7b8wa77wlyjqwr4hcwvrgaxgwqdgn6jjg3k"; depends=[]; }; - LSDinterface = derive2 { name="LSDinterface"; version="0.2.1"; sha256="1n8ynb99avn6nlhfnl1k8yn5qywhgin67fzk7b7c4b2dd3bhjd3w"; depends=[abind]; }; + LSDinterface = derive2 { name="LSDinterface"; version="0.3.0"; sha256="146qahfqqk9nvi52dv0z3v8yy4zhs9y295hzaaczxa2kqii2wprb"; depends=[abind]; }; LSMonteCarlo = derive2 { name="LSMonteCarlo"; version="1.0"; sha256="0w5042phkba5dw92r67ppp2s4khjpw5mm701dh9dya9lhj88bz6s"; depends=[fBasics mvtnorm]; }; + LSPFP = derive2 { name="LSPFP"; version="1.0.0"; sha256="074qd7zxa54cawipmba1khb6hyrkg553vc25gf2z0ydyv14shm0w"; depends=[bit64 data_table R_utils RCurl seqinr tcltk2]; }; LSTS = derive2 { name="LSTS"; version="1.0"; sha256="1vgdqyj6k50gqfffqfb4n3sw27jrq21nl2h8sz8942w4a8fn7sgv"; depends=[]; }; LTPDvar = derive2 { name="LTPDvar"; version="1.2"; sha256="0r9v5g5y9n85jdcvm7zpapm73ism48m3mmybpcmgcs028h2ndv7v"; depends=[]; }; LTR = derive2 { name="LTR"; version="1.0.0"; sha256="15g5hbrwhab80sarbjgwzvsn6c4fl18h014kz5fpzf0n1rijybik"; depends=[]; }; + LTRCtrees = derive2 { name="LTRCtrees"; version="0.1.5"; sha256="08g6bb2fbjw7xssav1n2hgr3x7wdpczvbdz2kgrgv8bhl1f4k9yx"; depends=[partykit rpart survival]; }; LVMMCOR = derive2 { name="LVMMCOR"; version="0.01.1"; sha256="1lq4hqcg0qkywdr4a22m1fr3m97749mm6n2jzdj9i7jrf0agc1fs"; depends=[MASS nlme]; }; LW1949 = derive2 { name="LW1949"; version="1.0.0"; sha256="0icfgsh93f4i73p7wpacb6dsg4cdfh71l7rwhqknnifvb5nvp8sv"; depends=[MASS mgcv plotrix]; }; - LaF = derive2 { name="LaF"; version="0.6.2"; sha256="180xsqilpkql8my0dimsxj1kpmb3jl19l6bz8li8m63zii4xmwmp"; depends=[Rcpp]; }; - Lahman = derive2 { name="Lahman"; version="4.0-1"; sha256="058rn595rnh2wl7qqrqd5smzzb486cn46lx2ifjc8nijm83lzhfx"; depends=[]; }; - LakeMetabolizer = derive2 { name="LakeMetabolizer"; version="1.4.1"; sha256="0bki7q1r3q80kg5kdxpig4lpzcy978zy9jx9mv40643idskrx2z3"; depends=[plyr rLakeAnalyzer]; }; + LaF = derive2 { name="LaF"; version="0.6.3"; sha256="0mp1g8pikmkahxgshgs4a7iryxzzcxhxdzvdn60s6m9h1addvhww"; depends=[Rcpp]; }; + LabourMarketAreas = derive2 { name="LabourMarketAreas"; version="2.0"; sha256="0xqqq8glrq5c089riybviq3zv3la1pqhi2fcalrz3i9n2fc13nd1"; depends=[data_table maptools rgdal rgeos sp spdep]; }; + Lahman = derive2 { name="Lahman"; version="5.0-0"; sha256="03zfgsgf36lnsjlrqfh1npqnz52dhd6xyzs7k1sxygwy62lg03lx"; depends=[dplyr]; }; + LakeMetabolizer = derive2 { name="LakeMetabolizer"; version="1.5.0"; sha256="06mvdrdyl0rh9rwd0jxww0sycadcp7cj08hq35q6vyzq0jkxn2xf"; depends=[plyr rLakeAnalyzer]; }; Lambda4 = derive2 { name="Lambda4"; version="3.0"; sha256="04ikkflfr0nmy1gr3gfldlh2v8mpl82k1wwnzp57d2kn75m9vbxz"; depends=[]; }; - LambertW = derive2 { name="LambertW"; version="0.6.2"; sha256="0sl47s82mkkn2yhdppnh37fb6kb38ilzp6gn16jvl24jzcr7mjkn"; depends=[ggplot2 lamW MASS RColorBrewer Rcpp reshape2]; }; - Langevin = derive2 { name="Langevin"; version="1.1.1"; sha256="0zkd3ifv8w1szxf22740qn7cv7b0bahq988lbr14smkrm3qyq37v"; depends=[Rcpp RcppArmadillo]; }; + LambertW = derive2 { name="LambertW"; version="0.6.4"; sha256="09ygalklv0d767nwziqwaxa7h517rzqgaznmb04q43122x2gwb3k"; depends=[ggplot2 lamW MASS RColorBrewer Rcpp reshape2]; }; + Langevin = derive2 { name="Langevin"; version="1.2"; sha256="0iy1nh4wzipw8spmfr0kscdnpaz3cq4idkbl5khiia2jid0kimvl"; depends=[Rcpp RcppArmadillo]; }; LaplaceDeconv = derive2 { name="LaplaceDeconv"; version="1.0.4"; sha256="0n56cmrb536j1vmfizzag1x8wm68c2znpclwbdl8qraqzp8rmffx"; depends=[orthopolynom polynom]; }; + LaplacesDemon = derive2 { name="LaplacesDemon"; version="16.0.1"; sha256="0yc6bv1mvs8ivrjgi49xz5bn4if24693rw148w5zxd11r3ryy8dy"; depends=[]; }; + LassoBacktracking = derive2 { name="LassoBacktracking"; version="0.1.1"; sha256="1vd47vf88qsac02sdnwag1zgvclnjw10apdbfkapxkik3xs0wkck"; depends=[Matrix Rcpp]; }; + LatentREGpp = derive2 { name="LatentREGpp"; version="0.2.2"; sha256="0y00rf53bwmx3f6k637n3jh8597k96xm679li079ij5l7j9r2yb3"; depends=[ade4 BH FactoMineR fastGHQuad MASS mvtnorm numDeriv optimx paran randtoolbox Rcpp RSpectra sirt statmod]; }; Laterality = derive2 { name="Laterality"; version="0.9.3"; sha256="0pl5bfbkzhgxjjzzh99s6rh4jsq0pbcgc902i0z2lmmivgs5qmd6"; depends=[ade4]; }; - LatticeKrig = derive2 { name="LatticeKrig"; version="5.4-1"; sha256="1lbnrjsfc9yirg18qx8jc20f9xhymf125p3g4bqp3kqa1mcjzvxs"; depends=[fields spam]; }; + LatticeKrig = derive2 { name="LatticeKrig"; version="6.2"; sha256="1d3qphpydgrqkyk5y5pr6jjndaf9vnfcin447x4z0iczannhggbk"; depends=[fields spam]; }; LeLogicielR = derive2 { name="LeLogicielR"; version="1.2"; sha256="0h52pzrksi1mn55mnxbfi61hl7x61cnkhp450slfrk68f6kp30x6"; depends=[gdata IndependenceTests RColorBrewer xtable]; }; LeafAngle = derive2 { name="LeafAngle"; version="1.2-1"; sha256="0g3i5300f3rvjz7g7z8s5n8xdcsp41gf1vnr4g36m1likddfpxlx"; depends=[]; }; - LeafArea = derive2 { name="LeafArea"; version="0.1.1"; sha256="0k085idzs2ka8pqlmii5xcmbv7wm3syicy36gc183wycibv3ii9f"; depends=[]; }; + LeafArea = derive2 { name="LeafArea"; version="0.1.5"; sha256="1a3yygpnc160qkwp3fd6aksynd533z5slncvby06byngqb42ib4h"; depends=[]; }; LearnBayes = derive2 { name="LearnBayes"; version="2.15"; sha256="0cz2rgqy1cmdz2h1qbdvfqxmmdzmg2z1scdlxr7k385anha13ja5"; depends=[]; }; - LexisPlotR = derive2 { name="LexisPlotR"; version="0.2"; sha256="0l1cd32kl0690n07f27dmjp5975zgv57zi3km5g3xjiq3lnk8hqr"; depends=[ggplot2]; }; - LiblineaR = derive2 { name="LiblineaR"; version="1.94-2"; sha256="11q3xydd4navpfcy9yx0fld8ixb6nvnkc7qxwrhvackiy810q86i"; depends=[]; }; + LendingClub = derive2 { name="LendingClub"; version="1.0.2"; sha256="1k7jvlmjyp5n45lz20as6v93lvgap766qlxp1chvv83ranh6dw3d"; depends=[dplyr httr jsonlite]; }; + LexisPlotR = derive2 { name="LexisPlotR"; version="0.3"; sha256="1qdgs6p11j0ign27bbnn32g65sw42982ijrig5cwqsdvxpdabjl8"; depends=[ggplot2]; }; + LiblineaR = derive2 { name="LiblineaR"; version="2.10-8"; sha256="17ykazac7iv02bxl8xg948vhbdr32icdm1v4bk31zmslp4xsk08g"; depends=[]; }; LiblineaR_ACF = derive2 { name="LiblineaR.ACF"; version="1.94-2"; sha256="1ldkb63yhm1ki8i585wp5byx6y0kvclwy3ncacgcdqqk0p41cyi6"; depends=[]; }; Libra = derive2 { name="Libra"; version="1.5"; sha256="1kd3d06qjswqhwdsjkijixd4yijzks8xcdrkpyh99dwg045fg9h7"; depends=[nnls]; }; LifeHist = derive2 { name="LifeHist"; version="1.0-1"; sha256="0q6l6rva5kxl8yzqa7ni4sdj6p4c61sdsjx8zhckzxb7xlwg2hh0"; depends=[BB Hmisc optimx]; }; @@ -1215,34 +1527,43 @@ in with self; { LinCal = derive2 { name="LinCal"; version="1.0"; sha256="1xr9jnna20hh78dh9wjg70jm8fhaxvdwql894kdp0y5h4pchkdph"; depends=[]; }; LinRegInteractive = derive2 { name="LinRegInteractive"; version="0.3-1"; sha256="0w7s3i6i2wnydh88l8lnzrh6w5zqkcwvms91iizis0mwd9af2jdl"; depends=[rpanel xtable]; }; LindenmayeR = derive2 { name="LindenmayeR"; version="0.1.6"; sha256="10a1m4yqr02gg5akxknwmhrlbqxnza78z8rm0ym36c4vlz8b0hyi"; depends=[stringr]; }; + LindleyR = derive2 { name="LindleyR"; version="1.1.0"; sha256="163i604q683znp6q544hnv4vibygwvsxcfhh8m7iaqr42li3c0ak"; depends=[lamW]; }; LinearRegressionMDE = derive2 { name="LinearRegressionMDE"; version="1.0"; sha256="0nl29l10y5kpds1i4sv7jwizq61fmh5c0zpj8x64qfif4l6y4v0d"; depends=[]; }; LinearizedSVR = derive2 { name="LinearizedSVR"; version="1.3"; sha256="0h3xmlnd5x37r5hdhcz90z5n1hsbr2ci3m939i89p1x9644i2l5g"; depends=[expectreg kernlab LiblineaR]; }; - LinkedMatrix = derive2 { name="LinkedMatrix"; version="1.1.0"; sha256="0dp4w8dk14vdrh3kgb6wqbc1j7nc86giajhfb1iv10mc72wplxm6"; depends=[]; }; + LinkageMapView = derive2 { name="LinkageMapView"; version="1.0.0"; sha256="0139bnlfj66w1npiv6dh4y4aln65nsfwf2qfzkxypigcyvxxyjwd"; depends=[plotrix]; }; + LinkedMatrix = derive2 { name="LinkedMatrix"; version="1.2.0"; sha256="14q8n0zqm21fwfyfqvxdacxj6mdipgi2143d8xksifk5ihhdj64v"; depends=[]; }; Lmoments = derive2 { name="Lmoments"; version="1.2-3"; sha256="13p0r4w16jvjnyjmkhkp3dwdfr1gap2l0k4k5jy41m8nc5fvcx79"; depends=[]; }; + LncFinder = derive2 { name="LncFinder"; version="1.0.0"; sha256="1ygbmazjm2jk0wrd13khpx8rkwd51cb50qxs2zdad0w09705mpsx"; depends=[caret e1071 seqinr]; }; LncMod = derive2 { name="LncMod"; version="1.1"; sha256="08001y7s93i3k3478jqfh9zsgpq6ym1xmdmldi7s76zbfr1nknvy"; depends=[pheatmap survival]; }; + LncPath = derive2 { name="LncPath"; version="1.0"; sha256="1cihwlj5sv000qg2wa931yx4ca6nixgihjna4g3fh7nr5aiv6cfn"; depends=[igraph samr]; }; + LncPriCNet = derive2 { name="LncPriCNet"; version="1.0"; sha256="19cw3x97xv42kc4jag7axnmpd0nfnwg7vnwcn2bgcmm5gapmfn1h"; depends=[]; }; LocFDRPois = derive2 { name="LocFDRPois"; version="1.0.0"; sha256="0zzdp9wgwr6wn3grimghpj4vq34x37c8bqg8acfzlzih8frqal3r"; depends=[dplyr ggplot2]; }; Lock5Data = derive2 { name="Lock5Data"; version="2.6"; sha256="0ckaac00ck5vyv0gv25l1zhgkm3char6ks1p4fl3vdl5gdyrc1pp"; depends=[]; }; Lock5withR = derive2 { name="Lock5withR"; version="1.2.2"; sha256="10x3i11pb4cig4pgfmw9984na5zjbg7d41y6crakiimf53ihx0c2"; depends=[]; }; LogConcDEAD = derive2 { name="LogConcDEAD"; version="1.5-9"; sha256="135vkp70q6gn75ds43aq08y13vrsgsgykssmnhrh6545i86vmhhi"; depends=[MASS mvtnorm]; }; LogicForest = derive2 { name="LogicForest"; version="2.1.0"; sha256="0zdyyi6wka0568414f1kw91rx04y76n1k11wxd4r8svb5wybjhp5"; depends=[CircStats gtools LogicReg plotrix]; }; - LogicReg = derive2 { name="LogicReg"; version="1.5.8"; sha256="0hjh4wk7dh1ryc75kipdgmkvhz15h46gr9qc5pk49286h11fbnsi"; depends=[survival]; }; + LogicOpt = derive2 { name="LogicOpt"; version="1.0.0"; sha256="15wcc2655vn1yz9gwxmqm9n1lmybk2gf4nlwz4i02kk4gabdazz0"; depends=[]; }; + LogicReg = derive2 { name="LogicReg"; version="1.5.9"; sha256="0rxzhbf51psdj7wb2dcah16y8f5q7y8p0yybz54rm00d1qagl6nq"; depends=[survival]; }; LogisticDx = derive2 { name="LogisticDx"; version="0.2"; sha256="0ciygvynnyajpn1glxy6mwj9vbl7iv8a8dfsi6wxjxp2rac68rig"; depends=[aod data_table pROC RColorBrewer rms speedglm statmod]; }; LogitNet = derive2 { name="LogitNet"; version="0.1-1"; sha256="08xi5rpbqkc1b3qj24blv3l0r68wcqbsbjcqxiypm75f3c2irc4i"; depends=[]; }; LogrankA = derive2 { name="LogrankA"; version="1.0"; sha256="005zkpzi8h03qvqlpkygrf9xv4q77klafkfxw47x04jvkhklwigb"; depends=[]; }; LoopAnalyst = derive2 { name="LoopAnalyst"; version="1.2-4"; sha256="02p46agsdbvw6dpgzahq9hfmy184jrkwa1hhnrcbrsmm54n3m2bx"; depends=[nlme]; }; LotkasLaw = derive2 { name="LotkasLaw"; version="0.0.1.0"; sha256="11kq52yavicimp7ll7ljrs69a5fxf68ydb9md7v6b02iw5mwbmz7"; depends=[]; }; LowRankQP = derive2 { name="LowRankQP"; version="1.0.2"; sha256="0is7v4cy4w1g3wn4wa32iqv4awd1nwvfcb71b3yk5wj59lpm8gs3"; depends=[]; }; - Luminescence = derive2 { name="Luminescence"; version="0.5.1"; sha256="0jxx2ldcm814qbdqzgqc7gbf4ymaqyvzykbxzp2cfqhvg20rkh7s"; depends=[bbmle data_table digest httr matrixStats minpack_lm raster Rcpp RcppArmadillo readxl shape XML zoo]; }; + LumReader = derive2 { name="LumReader"; version="0.1.0"; sha256="1h2r3c9xkwlnaicn65085bdx7y86ha2fpd5mxirqax5lm6d8lirc"; depends=[gridExtra lattice plotly shiny]; }; + Luminescence = derive2 { name="Luminescence"; version="0.7.3"; sha256="1g2dqar35rrnky9p8h14p63prq9x7fl629y2xkaf70gfkk1j4pg4"; depends=[bbmle data_table httr magrittr matrixStats minpack_lm raster Rcpp RcppArmadillo readxl shape XML zoo]; }; M3 = derive2 { name="M3"; version="0.3"; sha256="1l40alk166lshckqp72k5zmsgm7s5mgyzxlp11l64mgncjwkw2r3"; depends=[mapdata maps ncdf4 rgdal]; }; M4comp = derive2 { name="M4comp"; version="0.0.1"; sha256="1lxm6qcbdp7i00vxbikhyl7pdxnz4czar10kh9xm0qwy8sl8lxg2"; depends=[]; }; - MAINT_Data = derive2 { name="MAINT.Data"; version="0.5.1"; sha256="12vxy2l7mjp4dalg59zp0rd8cy3548vdqpzdkiq2rhvf9fvymxzr"; depends=[MASS miscTools]; }; - MALDIquant = derive2 { name="MALDIquant"; version="1.14"; sha256="1f6g1ra2hvihdxqgydbh06azddx5m4rcvx2dzq9rh2fjnk1a0kpa"; depends=[]; }; + MADPop = derive2 { name="MADPop"; version="1.1"; sha256="1w2jbiki6d14y32p8a50b8g53m1iva2kgik14yg27z5hx1rwwq97"; depends=[BH Rcpp RcppEigen rstan StanHeaders]; }; + MAINT_Data = derive2 { name="MAINT.Data"; version="1.0.1"; sha256="0qddlp4yfqfmswgjnfqlj9zqn6jdy94rzw92g0rl83iia9diqsmp"; depends=[MASS miscTools pcaPP Rcpp RcppEigen robustbase rrcov sn]; }; + MALDIquant = derive2 { name="MALDIquant"; version="1.16.1"; sha256="0058i0nc81qp7sj7j9bcy7s2vkmbacj5ycwdnvsfmsr172adxdar"; depends=[]; }; MALDIquantForeign = derive2 { name="MALDIquantForeign"; version="0.10"; sha256="1h1lvmw3233wgy1wvpa6n5q5j6z27hg3k31rq4a7c53w8g1bsmi3"; depends=[base64enc digest MALDIquant readBrukerFlexData readMzXmlData XML]; }; MAMA = derive2 { name="MAMA"; version="2.2.1"; sha256="1dcyfir6jv28jzvphiqrjns3jh2zg2201iwcvjzbmddl2isk9h0i"; depends=[genefilter GeneMeta gtools MergeMaid metaArray metaMA multtest xtable]; }; - MAMS = derive2 { name="MAMS"; version="0.7"; sha256="0ggww2260qgf51329a9vp0386i5mn3772aw56qwxyhbxyh7bkayw"; depends=[mvtnorm]; }; - MAMSE = derive2 { name="MAMSE"; version="0.1-3"; sha256="06q6raqbyi9zwg3wzaygqmfs3di55fh4bln3vscdw95kma4hz9km"; depends=[]; }; + MAMS = derive2 { name="MAMS"; version="1.0"; sha256="1y322is7c60naaz4cb090wpavw71y7hvx6n3k41ig8rfh096f60b"; depends=[mvtnorm]; }; + MAMSE = derive2 { name="MAMSE"; version="0.2-1"; sha256="0spi7fqkxjiw5j0nf7ambcr8kpzdhjzh9y3dk23y1mrk2dgc5dkw"; depends=[]; }; MANCIE = derive2 { name="MANCIE"; version="1.4"; sha256="0940xl3z5bca6hcnj2bj341l79wajilxlxzmyz3dlgrz0b3bbdmm"; depends=[]; }; - MAPA = derive2 { name="MAPA"; version="1.9"; sha256="1i143x2l6fq4vl8l8cagai580yqv446pdw4gw5qzxp85hgvm8bvg"; depends=[forecast]; }; + MANOVA_RM = derive2 { name="MANOVA.RM"; version="0.0.4"; sha256="1xw0wk2a14xwgay3vw7s1sxpwrmm01lqnfphcnhf1iyhdsxqnnnc"; depends=[magic MASS Matrix plotrix plyr]; }; + MAPA = derive2 { name="MAPA"; version="2.0.1"; sha256="013gp1wnw77nf1d9mvvw9zxs3dml9jvxd50nifx76bpkr00im940"; depends=[forecast RColorBrewer smooth]; }; MAPLES = derive2 { name="MAPLES"; version="1.0"; sha256="0hzsh7z1k7qazpxjqbm9842zgdpl51irg7yfd119a7b2sd3a8li9"; depends=[mgcv]; }; MAR1 = derive2 { name="MAR1"; version="1.0"; sha256="1r6j890icl5h3m2876sakmwr3c65513xnsj68sy0y0q7xj3a039l"; depends=[bestglm leaps]; }; MARSS = derive2 { name="MARSS"; version="3.9"; sha256="0vn8axzz0nqdcl3w00waghz68z8pvfm764w11kxxigvjpw2plj31"; depends=[KFAS mvtnorm nlme]; }; @@ -1251,80 +1572,96 @@ in with self; { MAT = derive2 { name="MAT"; version="2.2"; sha256="093axw2zp4i3f6s9621zwibcxrracp77xrc0q5q0m4yv3m35x908"; depends=[Rcpp RcppArmadillo]; }; MATA = derive2 { name="MATA"; version="0.3"; sha256="006mnc4wqh9vdigfzrzx4csgczi0idvlwb6r23w5mmsfbn0ysdm5"; depends=[]; }; MATTOOLS = derive2 { name="MATTOOLS"; version="1.1"; sha256="1nzrkm3a08rpsd9vplyf33rrkadlrd0ln70k95qxj98ndh2v97px"; depends=[]; }; - MAVIS = derive2 { name="MAVIS"; version="1.1.1"; sha256="1ydmnf4nn1d0iik3ldkk8d4291fvzhrgsjm0qkzd242r0mm2ss2p"; depends=[compute_es ggplot2 MAc MAd metafor quantreg SCMA SCRT shiny shinyAce shinyBS]; }; + MAVE = derive2 { name="MAVE"; version="0.1.7"; sha256="10blz9axxnnjcdg796gr2y27f4mjb1b5daw23llzrclgg2fsykgf"; depends=[Rcpp RcppArmadillo]; }; + MAVIS = derive2 { name="MAVIS"; version="1.1.2"; sha256="1ankgazqf368jhj8csmyyvlys27d61s41fcxq3s324gz69xh25ll"; depends=[compute_es ggplot2 MAc MAd metafor quantreg SCMA SCRT shiny shinyAce shinyBS weightr]; }; MAVTgsa = derive2 { name="MAVTgsa"; version="1.3"; sha256="0rzal9nsi8y873cbf6hrdyzyxnpd4r1yr9fj66cn0s1c8g93ls0y"; depends=[corpcor foreach MASS multcomp randomForest]; }; MAc = derive2 { name="MAc"; version="1.1"; sha256="1lshi5rb8l2mpd302wskhlk5vz1wjidvbss9y69l63zjqdwjs7ch"; depends=[]; }; MAclinical = derive2 { name="MAclinical"; version="1.0-5"; sha256="1g0ka1kqww2xim8rp5rznkzn0a541zvf841s3lbphfh9k3y3ixs3"; depends=[e1071 party plsgenomics st]; }; MAd = derive2 { name="MAd"; version="0.8-2"; sha256="0mhys27rmzb0kal4jr8j2y44z4qq46fw260sxl8da9qqvplcwq1p"; depends=[]; }; MBA = derive2 { name="MBA"; version="0.0-8"; sha256="09rs1861fz41dgicgh4f95v4zafh1jfxhqar1plpqqdx8z1gpxfl"; depends=[BH sp]; }; + MBC = derive2 { name="MBC"; version="0.10-1"; sha256="14y0adpm0h57b6r15hi69ri69kmfvxnacvxsspfhijyxhnwgnan6"; depends=[energy Matrix]; }; MBCluster_Seq = derive2 { name="MBCluster.Seq"; version="1.0"; sha256="0xbi2r0g0gzsy05qrq1ljr5f5s3glwxj204vk2f1lgwdx3fd116m"; depends=[]; }; - MBESS = derive2 { name="MBESS"; version="4.0.0"; sha256="09sz3g78h584034v9xx8n03swnc01mabiavhryr0hcgsh2hdhz9i"; depends=[boot gsl lavaan MASS mnormt nlme OpenMx sem semTools]; }; + MBESS = derive2 { name="MBESS"; version="4.2.0"; sha256="02d7wpsh58jq79ph9xxx33ikzb4j05kdfmjy935gyx3i3mycapm1"; depends=[boot gsl lavaan MASS mnormt nlme OpenMx sem semTools]; }; + MBHdesign = derive2 { name="MBHdesign"; version="1.0.61"; sha256="1ahc3xwwgfn052m674l2cxjw87qgp788hzx30z56dihfpirvw45f"; depends=[class geometry mgcv mvtnorm randtoolbox]; }; MBI = derive2 { name="MBI"; version="1.0"; sha256="1lb0sjwa6x360n9a9pagz6yhxh37gxq1fk0f5c3i2sd56ny9jpns"; depends=[]; }; + MBSGS = derive2 { name="MBSGS"; version="1.0.0"; sha256="1g13bjxmbnd7fwb3nv1s87ra7iwjkvid9pfwy7qxixy80pdrlfz5"; depends=[MASS MCMCpack mgcv mnormt truncnorm]; }; MBTAr = derive2 { name="MBTAr"; version="1.0.1"; sha256="0zak19pdk0wwkhl4kj1jbwx0qmqcgpmmqv3vk0wg8nwgf1l65idy"; depends=[jsonlite]; }; MBmca = derive2 { name="MBmca"; version="0.0.3-5"; sha256="0p7ddpsy4hwkfwyyszidi33qpdg4xllny7g9x24gk782p7kjfgq9"; depends=[chipPCR robustbase]; }; MC2toPath = derive2 { name="MC2toPath"; version="0.0.16"; sha256="0jdn9wpxavn2wrml907v23mfxr62wwjdh7487ihjj59g434ry7wh"; depends=[RNetCDF]; }; - MCAPS = derive2 { name="MCAPS"; version="0.3-2"; sha256="1jvxl9xi102pcs3swxlx4jk76i7i4fll88c92k7m379ik3r36alb"; depends=[stashR]; }; - MCDA = derive2 { name="MCDA"; version="0.0.12"; sha256="1lvnsv4x35wh8gzdjqql9rpzxx0x6jyrgm5bdlmak38l6gg3r87w"; depends=[glpkAPI Rglpk]; }; - MCDM = derive2 { name="MCDM"; version="1.0"; sha256="0lajn4kv6hjxkrac08wvviws8lv6nnr70ibclm5cnwmvvaxfvn4d"; depends=[]; }; - MCI = derive2 { name="MCI"; version="1.0.0"; sha256="1p2qr9jf3zir7pccsw0fqy0f2ics177n4097r2wcwch86by47naq"; depends=[]; }; + MCAvariants = derive2 { name="MCAvariants"; version="2.0"; sha256="0akff64v49d5r0wvspal0pz17jhz1ry4vdmj47m28gzjj69zcab0"; depends=[]; }; + MCDA = derive2 { name="MCDA"; version="0.0.16"; sha256="1yxcpvapn9dv802z3fm0sfgf8lkpsniwb41qnb8lbvmqnyzmkqhw"; depends=[glpkAPI RColorBrewer Rglpk]; }; + MCDM = derive2 { name="MCDM"; version="1.2"; sha256="0r27y9mqvfnv1m0yi2xdyjr4y1s43d5yav960kz2xa732hrrxw01"; depends=[RankAggreg]; }; + MCI = derive2 { name="MCI"; version="1.3.0"; sha256="0256rxsjcrwyah4ixhfl3ba46sh02sq3rc1h0mx2jckycdf0nx9r"; depends=[]; }; MCL = derive2 { name="MCL"; version="1.0"; sha256="1w36h4vhd525h57pz6ik3abbsrvxnkcqypl2aj1ijb6wm7nfp4ri"; depends=[expm]; }; MCMC_OTU = derive2 { name="MCMC.OTU"; version="1.0.10"; sha256="15k3y4bm4cxjb6r30afpw9gksflsxigzb17zwm1ipygq0d0h0zkg"; depends=[coda ggplot2 MCMCglmm]; }; - MCMC_qpcr = derive2 { name="MCMC.qpcr"; version="1.2.2"; sha256="1ii5ryb58z4xwg69mximdjmxamkwz6k2ydf6qkd1jcq50afjv0pp"; depends=[coda ggplot2 MCMCglmm]; }; - MCMC4Extremes = derive2 { name="MCMC4Extremes"; version="1.0"; sha256="1ib3rllvqjni9xg3634ankrr66f1lj376kl3xhfwnwbfsbi4a8pw"; depends=[evir]; }; - MCMCglmm = derive2 { name="MCMCglmm"; version="2.22.1"; sha256="045qxdqq58jf5rrx8jxp8db8s2i9hdi5abvkmcz0hjh146gpgimf"; depends=[ape coda corpcor cubature Matrix tensorA]; }; - MCMCpack = derive2 { name="MCMCpack"; version="1.3-5"; sha256="1jjj6v1nhdwaf6g9w0npdn07s02m58vi3va8b2knwzb1z68cjrqq"; depends=[coda graph lattice MASS mcmc quantreg Rgraphviz]; }; + MCMC_qpcr = derive2 { name="MCMC.qpcr"; version="1.2.3"; sha256="0b9n793spljmsb58jp41vnl9c753xqaw1g4wbi4ax348cvi09jk8"; depends=[coda ggplot2 MCMCglmm]; }; + MCMC4Extremes = derive2 { name="MCMC4Extremes"; version="1.1"; sha256="06p6xdbja7vrdq4vnhybpkmyf4rkaihcmy9sc81sb0h2wa21vcq0"; depends=[evir]; }; + MCMCglmm = derive2 { name="MCMCglmm"; version="2.24"; sha256="0s2x8kazn3g3x3z4ji95c5vmfj8awcjmx92c0alsj5ms1bqxsh7x"; depends=[ape coda corpcor cubature Matrix tensorA]; }; + MCMCpack = derive2 { name="MCMCpack"; version="1.3-9"; sha256="0wvv7qzrm1h5w4znz6dqypyxdj5ckpsljid1l9cs1xl9mnjfgpay"; depends=[coda lattice MASS mcmc quantreg]; }; + MCMCvis = derive2 { name="MCMCvis"; version="0.7.1"; sha256="1hqkxqs1s0m1znqlf6bjx5nscqv8galnkxgp738pcvvw0mwn19pk"; depends=[coda rstan]; }; MCPAN = derive2 { name="MCPAN"; version="1.1-20"; sha256="0j36dhi3bf3q14bbcmrmipz2fcn6g9gsqidzm43i8x5r7hcvv2lh"; depends=[magic MCMCpack multcomp mvtnorm plyr]; }; - MCPMod = derive2 { name="MCPMod"; version="1.0-8"; sha256="1kkak9x66dmannhxfdp6cybbjh2g43p03kyp7a4x1az7h4bnc92f"; depends=[lattice mvtnorm]; }; + MCPMod = derive2 { name="MCPMod"; version="1.0-9"; sha256="03zqassvyqwllg1yjfdg2zxamkg2dy8cy19ki5srpn6clv5zy1rj"; depends=[lattice mvtnorm]; }; MCPerm = derive2 { name="MCPerm"; version="1.1.4"; sha256="0g65vzn43k6qrsglxd2kz245f662gl3c2gdz6qvvxa96v6q9lhh1"; depends=[metafor]; }; MCS = derive2 { name="MCS"; version="0.1.1"; sha256="0fxc5ri4ci3r5w1hdicqm1j0g6fwrl3wng7qwc2c0isagrn3vp4n"; depends=[]; }; MCTM = derive2 { name="MCTM"; version="1.0"; sha256="14xjfskyrqi0m58lkwjfjpss5j7wy3ajr148n526czrrpccg108j"; depends=[]; }; MChtest = derive2 { name="MChtest"; version="1.0-2"; sha256="01lflilrp42m236cznn6qgzvv5v9fzpx6wcfxp3q545bw2xmbdvj"; depends=[]; }; MConjoint = derive2 { name="MConjoint"; version="0.1"; sha256="02yik28mhvd4rfqwrprdbdjx9c49ds55fh042bsjajs2ip467w5c"; depends=[]; }; MDM = derive2 { name="MDM"; version="1.3"; sha256="1bvjhl243rf19829ly1qc20ik937hb82lq23aiysj7ya55z8hdpf"; depends=[nnet]; }; - MDMR = derive2 { name="MDMR"; version="0.3.0"; sha256="1135jvqbmh1811jw9ih0jvh7nv2d157yv7alwr8shlpx2vzlbbcw"; depends=[CompQuadForm]; }; + MDMR = derive2 { name="MDMR"; version="0.4.3"; sha256="0vgqdvvryyyzibpfwax8qx45phc9iwb5rwgqpcp21d32z0n7a56f"; depends=[CompQuadForm]; }; MDPtoolbox = derive2 { name="MDPtoolbox"; version="4.0.2"; sha256="04w0y5ib23l7nhj1947hwvfk6lpwwc11amqpyw1w53yj794g97wz"; depends=[linprog Matrix]; }; MDR = derive2 { name="MDR"; version="1.2"; sha256="0g2fvvcwagml6635va87nc0ijzy0pypx5aqzz7mf5w13j0wpm24y"; depends=[lattice]; }; MDimNormn = derive2 { name="MDimNormn"; version="0.8.0"; sha256="080m0irx5v8l45fg9ig5yzcj92s3ah8a9aha288byszli1cchgpn"; depends=[]; }; - MDplot = derive2 { name="MDplot"; version="0.3"; sha256="1p46ggriwjrjrkbv9xkhpjiivz1gml0c2anpfrm83y2y9is19z37"; depends=[gplots gtools MASS RColorBrewer]; }; + MDplot = derive2 { name="MDplot"; version="0.3.1"; sha256="1d5gv47zaal6vsfi10vfjvawdm911pnhjradhkrd647w54iykl59"; depends=[gplots gtools MASS RColorBrewer]; }; MEET = derive2 { name="MEET"; version="5.1.1"; sha256="02xz2zkwqaf1wck9a3h1j6z8dasw4j0zqa88jg6h10wqzcrlp9ba"; depends=[Hmisc KernSmooth Matrix pcaMethods ROCR seqinr seqLogo]; }; + MEGENA = derive2 { name="MEGENA"; version="1.3.6"; sha256="0ylv7kbk0x3rm08aiwci4p3kma08qj4szlw2h1d6wcqmipy93v8s"; depends=[BH cluster doParallel foreach fpc ggplot2 ggrepel igraph Matrix Rcpp reshape]; }; MEMSS = derive2 { name="MEMSS"; version="0.9-2"; sha256="0wyw8yjs4miwgwdfcnfbzvkxrgv5r3jlg3cg8q2vy7s69wvhksmy"; depends=[lme4]; }; - MESS = derive2 { name="MESS"; version="0.3-2"; sha256="0x518awi2mxjh3vq69n1jv4d4dxjxhqfx1py48dijgd6w674d3q8"; depends=[geepack glmnet kinship2 Matrix mvtnorm]; }; + MESS = derive2 { name="MESS"; version="0.4-3"; sha256="0317nk2lbrrflg6gaz7nz413n4i79xvh6jndw0m4dzlwmcj6al2r"; depends=[geepack glmnet kinship2 MASS Matrix mvtnorm Rcpp RcppArmadillo]; }; + MEclustnet = derive2 { name="MEclustnet"; version="1.1"; sha256="1ayyrxdb9qd7fxnr8y2lbjcd2c8m38mjm1ks6z22vyddbhkf78in"; depends=[e1071 ellipse latentnet MASS mclust mvtnorm nnet vegan]; }; MExPosition = derive2 { name="MExPosition"; version="2.0.3"; sha256="1l27wp0psfvlkk79fhb8ypf8awardjljg1f37yj42friy9pdfksz"; depends=[ExPosition prettyGraphs]; }; MF = derive2 { name="MF"; version="4.3.2"; sha256="1arnhyqf1cjvngygcpqk2g4d52949rhkjmclbaskyxcrvp62qln0"; depends=[]; }; - MFAg = derive2 { name="MFAg"; version="1.3"; sha256="1f5kd5zvk28jd8km4py4msyv69700knj20db5c528f2j8sd8qavc"; depends=[]; }; + MFAg = derive2 { name="MFAg"; version="1.4"; sha256="092zbl2pxbsvfyf3qssbid14194p0ax2zrw0gzpyqwzdpx0brrlb"; depends=[]; }; MFHD = derive2 { name="MFHD"; version="0.0.1"; sha256="0gb8y297y1x03wy46530psmlawyv4z5dydilk36qcmadlk1wx02k"; depends=[deldir depth depthTools fda_usc matrixStats]; }; + MFPCA = derive2 { name="MFPCA"; version="1.0-1"; sha256="0sw8svp0zgdl2yyvf3jq3c3kai6pnnn93cizgyjdc63y74k3n3pz"; depends=[abind foreach funData irlba Matrix mgcv plyr]; }; MGGM = derive2 { name="MGGM"; version="1.0"; sha256="0j9wyshwxd7zqb60avb7dmfgnrzv2nyn983bw0g5997zixz0w6mp"; depends=[]; }; + MGL = derive2 { name="MGL"; version="1.1"; sha256="03q453swnangxyc4nvjhzw2zpcy5vp1wpilap5rwymnf0c0xi4j7"; depends=[]; }; MGLM = derive2 { name="MGLM"; version="0.0.7"; sha256="0wqwdx8gskrp2y04f947m0cvgd685n8g3wgggc8sv0ra7z2qzx9y"; depends=[]; }; MGRASTer = derive2 { name="MGRASTer"; version="0.9"; sha256="0jmf2900r56v60981sabflkhid3yrqd9xd7crb56vgfl1qkva9zp"; depends=[]; }; - MGSDA = derive2 { name="MGSDA"; version="1.2"; sha256="0a465kali82x9c0hld8f1m285d7zw0cf93lps87amlj3ck0nhh8z"; depends=[MASS]; }; - MHTrajectoryR = derive2 { name="MHTrajectoryR"; version="1.0"; sha256="1hp0v7w611b9a4k7zck3zx15b0298z1i2vrl2w35nw74iqpicrhh"; depends=[mgcv]; }; + MGSDA = derive2 { name="MGSDA"; version="1.4"; sha256="0grwl740yvz2av5nkvmyyrr8ji5f39sjs1c5gxp6lp9p36i2wc32"; depends=[MASS]; }; + MHTdiscrete = derive2 { name="MHTdiscrete"; version="0.1.3"; sha256="14qhrja5b2nxph3mda55y31jix41i6w884m9yl4c0f9g730ai7l6"; depends=[]; }; + MHTrajectoryR = derive2 { name="MHTrajectoryR"; version="1.0.1"; sha256="13idcjx7pjpwvr4c52938yqhhaj1gprb8hjhaim3jx4062wf9pla"; depends=[mgcv]; }; MHadaptive = derive2 { name="MHadaptive"; version="1.1-8"; sha256="1w3bm82v8ahxrf0vqn0pznv7dqn212drinkz8y5kr1flx423l9ws"; depends=[MASS]; }; - MIICD = derive2 { name="MIICD"; version="2.2"; sha256="16r3ry27iki32f2y4ic6w15fgr21wrs0qbiiyx23nqivvw8x4017"; depends=[MASS mstate survival]; }; - MIIVsem = derive2 { name="MIIVsem"; version="0.4.7"; sha256="1k0rfs5cm7n5xpk472mv74p3l2ic2y8vij6dfcv918jm5xsnz9sz"; depends=[lavaan Matrix]; }; + MIAmaxent = derive2 { name="MIAmaxent"; version="0.4.0"; sha256="0i2bw9s9zm2bfi121aafaqf86zvimf4gzix50wdh2q96bn61bb2s"; depends=[dplyr e1071 raster]; }; + MIDN = derive2 { name="MIDN"; version="1.0"; sha256="08i9zfmaywi5imp36ahjpirlkl55k01x543nz95i089w3sfrsz0g"; depends=[BiasedUrn]; }; + MIICD = derive2 { name="MIICD"; version="2.3"; sha256="08ygn2qqxzcnhs7rbd721i7h40l6n882xnmgi3li72vxyq64ndfa"; depends=[MASS mstate survival]; }; + MIIVsem = derive2 { name="MIIVsem"; version="0.4.8"; sha256="1l0n4zgjg8nzapjs65dlirlr13sgzmk2750rwjghxzdcinjbjsmb"; depends=[lavaan Matrix]; }; MILC = derive2 { name="MILC"; version="1.0"; sha256="14xsiw5al6kixwvf3ph0dlm8s13gsbqvzb92da6ng3x4iiyb1g0w"; depends=[]; }; MIPHENO = derive2 { name="MIPHENO"; version="1.2"; sha256="0hcaq66biv4izszdhqkgxgz91mgkjk1yrwq27fx07a2zmzj44sfv"; depends=[doBy gdata]; }; MIXFIM = derive2 { name="MIXFIM"; version="1.0"; sha256="0m4fnmdd8lsdxq629f87lzz1cdc1q0j3q9hqna85ncpflyfwlvg9"; depends=[ggplot2 mvtnorm rstan]; }; MImix = derive2 { name="MImix"; version="1.0"; sha256="033gxr0z2xba0pgckiigblb1xa94wrfmpgv3j122cdynjch44j4r"; depends=[]; }; MInt = derive2 { name="MInt"; version="1.0.1"; sha256="1nk02baainxk7z083yyajxrnadg2y1dnhr51fianibvph1pjjkl6"; depends=[glasso MASS testthat trust]; }; MKLE = derive2 { name="MKLE"; version="0.05"; sha256="00hcihjn3xfkzy0lvb70hl2acjkwk6s3y7l4gprix24shnblvxzi"; depends=[]; }; - MKmisc = derive2 { name="MKmisc"; version="0.991"; sha256="0zswd681rzhzaf51ij8szah1r8dix870k3rqajqbr60nw4ahnfip"; depends=[RColorBrewer robustbase]; }; - MLCIRTwithin = derive2 { name="MLCIRTwithin"; version="1.1"; sha256="1zp50y0628f69jn0bqi9lw9qrhh9rq275xl2nl6hakhc1z6mqkj0"; depends=[limSolve MASS MultiLCIRT]; }; + MKmisc = derive2 { name="MKmisc"; version="0.993"; sha256="0zhscicwcppwhpylax69ablkfllgf6f4fmp1gb7yi2cm59f94ny1"; depends=[RColorBrewer robustbase]; }; + MLCIRTwithin = derive2 { name="MLCIRTwithin"; version="2.1"; sha256="07fhbhfnlmllxxdpdqiaz6d72y4pj3vrz6lw5rnlb2m7vknx51ik"; depends=[limSolve MASS MultiLCIRT]; }; MLCM = derive2 { name="MLCM"; version="0.4.1"; sha256="1g6lmw75qdiq0fshxr3sqwm1a3y4928chxkggnfwwxp8hqw4r6px"; depends=[]; }; MLDS = derive2 { name="MLDS"; version="0.4.5"; sha256="1a5y031kd6zx0zqlk6dvxzsv3isbvg9jap4gqad2jwryh0a9x3c1"; depends=[MASS]; }; MLEcens = derive2 { name="MLEcens"; version="0.1-4"; sha256="0zlmrcjraypscgs2v0w4s4hm7qccsmaz4hjsgqpn0058vx622945"; depends=[]; }; + MLPUGS = derive2 { name="MLPUGS"; version="0.2.0"; sha256="1yda37073g640g1qrkjrwa8hbyq6bjlcw3wpznx0bk5h0639bc0s"; depends=[]; }; MLRMPA = derive2 { name="MLRMPA"; version="1.0"; sha256="0gfbi70b15ivv76l3i0zlm14cq398nlny40aci3vqxxd0m2lyyx5"; depends=[ClustOfVar]; }; - MLmetrics = derive2 { name="MLmetrics"; version="1.0.0"; sha256="05j8hwcvfrsslib5k4w3xwkllb3rxdxazsld26zpjf3dc643ag9a"; depends=[]; }; + MLmetrics = derive2 { name="MLmetrics"; version="1.1.1"; sha256="061129b36h7xqw4zsznik694n8yy9qq6aaqfhdxkhdv8n5v1nzvp"; depends=[ROCR]; }; MM = derive2 { name="MM"; version="1.6-2"; sha256="1z7i8ggd54qjmlxw9ks686hqgm272lwwhgw2s00d9946rxhb3ffi"; depends=[emulator magic Oarray partitions]; }; MM2S = derive2 { name="MM2S"; version="1.0.5"; sha256="0h10cbsdnndllwq4cb4aamjy104ckvn01skh7rixa1iqdndac9fx"; depends=[GSVA kknn lattice pheatmap]; }; MM2Sdata = derive2 { name="MM2Sdata"; version="1.0.1"; sha256="1prx0gm9shizj45382qhja417y18jp6spk2hmgrzb7sbniyqs5pd"; depends=[Biobase]; }; + MMDai = derive2 { name="MMDai"; version="1.0.0"; sha256="0xrdynns2w3rgpf2hliyn80x3an17kpisbkpfhwsak87pbfamk9i"; depends=[DirichletReg]; }; MMMS = derive2 { name="MMMS"; version="0.1"; sha256="1a71vs3k16j14zgqfd4v92dq9swrb44n9zww8na6di82nla8afck"; depends=[glmnet survival]; }; MMS = derive2 { name="MMS"; version="3.00"; sha256="06909912v2hr52s8k0a0830lbmdh05dcd7k47vydhbwq3rzf3ahg"; depends=[glmnet Matrix mht]; }; MMWRweek = derive2 { name="MMWRweek"; version="0.1.1"; sha256="16dwmpj13rzxmd2x7xaakw2zq2aly7ajjbfnc39qvdzk6n2x37wn"; depends=[]; }; - MNM = derive2 { name="MNM"; version="1.0-1"; sha256="0fy43jfd7wak2rfdv5hdq7zc0zsxnbz9p69g6sla0zliibafg0q6"; depends=[ellipse ICS ICSNP SpatialNP]; }; + MNM = derive2 { name="MNM"; version="1.0-2"; sha256="10ikn53filbl5qnwp9d54ds2wmzjgxp5xkkp694q75r5crl4wv65"; depends=[ellipse ICS ICSNP SpatialNP]; }; MNP = derive2 { name="MNP"; version="2.6-4"; sha256="068lssg565dw673dm8f5k6dbxl2vblnszg8wibzy3ijf96hp03cw"; depends=[MASS]; }; MNS = derive2 { name="MNS"; version="1.0"; sha256="0if46a6rw0f2d72wnykkaa5z5b1p2c0r43il6cbwbcnnb3zd8acb"; depends=[doParallel glmnet igraph MASS mvtnorm]; }; MOCCA = derive2 { name="MOCCA"; version="1.2"; sha256="04smpzn9x64w1vpw4szqa7dwnaak1ls6gpg7fgajs68mv5zivffa"; depends=[cclust clv]; }; - MODISTools = derive2 { name="MODISTools"; version="0.94.6"; sha256="0jzs2dvhq48zjzb2rj6yxws8i2h7w2k00vg7xg5riad4v9j9jk0c"; depends=[RCurl XML]; }; + MODIS = derive2 { name="MODIS"; version="1.0.0"; sha256="05p4lisdbpzvq42pvfc2hdqr5p16gkr85g4bcc5j4h4f4cva5drl"; depends=[bitops mapdata maps ptw raster RCurl rgdal rgeos sp XML]; }; + MODISSnow = derive2 { name="MODISSnow"; version="0.1.0.0"; sha256="1p0mil074gapw6v8paw9595rzp85hxrfsc65llh0ljalmacwgx04"; depends=[gdalUtils lubridate raster RCurl]; }; + MODISTools = derive2 { name="MODISTools"; version="0.95.1"; sha256="099xh987phvya67b75c8j4z58zpqf69q3qxh280l9ka3w6pq3ljm"; depends=[RCurl XML]; }; MOJOV = derive2 { name="MOJOV"; version="1.0.1"; sha256="11mcqxw83z4xx29s34v4rsbb3zvyhlb2lmvf97b77n455gsy5hab"; depends=[aod lattice saws survey]; }; MOrder = derive2 { name="MOrder"; version="0.1"; sha256="1vhy20xyvfc18f04hvlb1jm2n0caaz8ysy13w2rra5i4kjdvz52i"; depends=[]; }; MPAgenomics = derive2 { name="MPAgenomics"; version="1.1.2"; sha256="1gwglzkip54si6i23y8s5hhkzrwmhvfyvsian9593ixy4kqlm2bz"; depends=[cghseg changepoint glmnet HDPenReg R_utils spikeslab]; }; @@ -1335,301 +1672,365 @@ in with self; { MPSEM = derive2 { name="MPSEM"; version="0.3-1"; sha256="1c4788qvvn02hnihlz56h2nsj7qfdaw3x2i7jmkd9ll2jsszav3v"; depends=[ape MASS]; }; MPTinR = derive2 { name="MPTinR"; version="1.10.3"; sha256="0281w5dhg8wmi1rz80xribq437shp4m890c504kggsacr28mbhkw"; depends=[Brobdingnag numDeriv Rcpp RcppEigen]; }; MPV = derive2 { name="MPV"; version="1.38"; sha256="1w3b0lszqmsz0yqvaz56x08xmy1m5ngl9m6p2pg9pjv13k8dv190"; depends=[]; }; - MRCE = derive2 { name="MRCE"; version="2.0"; sha256="0fnd7ykcxi04pv1af5zbmavsp577vkw6pcrh011na5pzy2xrc49z"; depends=[QUIC]; }; + MRCE = derive2 { name="MRCE"; version="2.1"; sha256="12q7mqn2qkgv992df71k1xmli61khhbfm7lw0n7z2l7qqldpiw1n"; depends=[QUIC]; }; MRCV = derive2 { name="MRCV"; version="0.3-3"; sha256="0m29mpsd3kackwrawvahi22j0aghfb12x9j18xk4x1w4bkpiscmf"; depends=[tables]; }; MRH = derive2 { name="MRH"; version="2.2"; sha256="1icwlq8js58g9fkiq7fwjg8r97ca47xl3dscnhnga99gkgsfgjwl"; depends=[coda KMsurv survival]; }; - MRIaggr = derive2 { name="MRIaggr"; version="1.1.5"; sha256="0c0whxdwamli1m9xnhv9kdv7zcb0sprlhdxw3c7800s311xg0iq4"; depends=[Matrix oro_dicom oro_nifti RANN Rcpp RcppArmadillo RcppProgress ROCR spam]; }; - MRMR = derive2 { name="MRMR"; version="0.1.3"; sha256="1b3a4bkpcncl4sh7d81nk6b2dzhzqn9zhqdxv31jgippsqm2s3k2"; depends=[ggplot2 lmtest lubridate plyr reshape2]; }; + MRMR = derive2 { name="MRMR"; version="0.1.4"; sha256="0dgbhlynaaka7mdzl6igwgcdzvy6cm2y8mbxaf9pfla8w3z8y0lq"; depends=[ggplot2 lmtest lubridate plyr reshape2]; }; MRQoL = derive2 { name="MRQoL"; version="1.0"; sha256="0isn4g3jpz7wm99ymrshl6zgkb7iancdzdxl2w98n8fbxsh5z6sw"; depends=[]; }; - MRS = derive2 { name="MRS"; version="1.1"; sha256="1bzw36ba2nzic0vsr7ipmf6d5vrglf9fhlppnw4q8y81q5jla3q2"; depends=[igraph optimx Rcpp RcppArmadillo]; }; + MRS = derive2 { name="MRS"; version="1.2.1"; sha256="07kpj5q1slplqm3907yj74dkfq348a9fwfr0dzhjzdbkhph2iwpi"; depends=[igraph optimx Rcpp RcppArmadillo]; }; MRSP = derive2 { name="MRSP"; version="0.4.3"; sha256="0zv22xiq3qh9x3r2ckkvq1vv0vkcirh8y87053bqvw1m20j7q1by"; depends=[Formula matrixcalc]; }; MRsurv = derive2 { name="MRsurv"; version="0.2"; sha256="148myzk6r8whkpv1yv59dmdlr2n8vdwmaww165aw696xfjxwq550"; depends=[mvtnorm survival]; }; MRwarping = derive2 { name="MRwarping"; version="1.0"; sha256="13bcs7rlm4irx7yzdnib558w9014a4chh9xwc010m6pxvxv36qnv"; depends=[boa SemiPar]; }; - MSBVAR = derive2 { name="MSBVAR"; version="0.9-2"; sha256="1p6n8vbrlqqq1vbqvxnn0ffmnr462gslb1jkaf4vcrndbln5cclq"; depends=[bit coda KernSmooth lattice mvtnorm xtable]; }; + MSBVAR = derive2 { name="MSBVAR"; version="0.9-3"; sha256="0ybkkl3hfff2jgz4a0z105bb0v6jl4dkkqmdg382and8w0mc496c"; depends=[bit coda KernSmooth lattice mvtnorm xtable]; }; + MSCMT = derive2 { name="MSCMT"; version="1.2.0"; sha256="0ypysx3782nipz2zgvp2h183nhak47gnjh2xvfpzqmn49vd8x0fc"; depends=[ggplot2 lpSolve]; }; MSG = derive2 { name="MSG"; version="0.3"; sha256="181kzkbw69bs3vir6dzgq7jzp8xcpg1p4isfb660vgnd1flb03ix"; depends=[RColorBrewer]; }; + MSGARCH = derive2 { name="MSGARCH"; version="0.17.7"; sha256="01n8ngk0r2hfa5vrj0mbc09kq9dj0d4fjzhszcj80mzfr47jf5vf"; depends=[adaptMCMC DEoptim dfoptim expm fanplot ggplot2 nloptr Rcpp RcppArmadillo reshape2 stringr zoo]; }; + MSGLasso = derive2 { name="MSGLasso"; version="2.1"; sha256="1k17vnvzr647pwfbdxrpqcsp34iygq86wf0ns4rq8cj6q5mik1bv"; depends=[]; }; MSIseq = derive2 { name="MSIseq"; version="1.0.0"; sha256="1v2why1k6pjsc04044nr74571p7541nciq7xkzmya3jq6dw878j3"; depends=[IRanges R_utils rJava RWeka]; }; - MSQC = derive2 { name="MSQC"; version="1.0.1"; sha256="1vs9kygjg9f4sr1m80hdn03gdhbdqfjamqxhbs9zha8smjrsgisw"; depends=[rgl]; }; - MST = derive2 { name="MST"; version="1.2"; sha256="1zx5gs6c8qa5b56c4z8zc96kggy5qc3fff9q7ki58zg36rbhi0wm"; depends=[MASS survival]; }; + MSQC = derive2 { name="MSQC"; version="1.0.2"; sha256="11wcy04cpjlnc71s2svs4lm1cp718dz1p4a1603x6zwpbf22bygn"; depends=[rgl]; }; + MST = derive2 { name="MST"; version="1.3"; sha256="0qxkwkb13g6jqsiwa44izp2f3swzc7zhkprpl2qlxfs6sszr9v36"; depends=[MASS partykit survival]; }; MScombine = derive2 { name="MScombine"; version="1.1"; sha256="0kgz1l4jlhcada3fp02dscf4zx6a22cjxj251838lfz65f512hrn"; depends=[plyr]; }; MSeasy = derive2 { name="MSeasy"; version="5.3.3"; sha256="191mvg1imxfjlnd808ypn4lsjx7n6ydf16flax79hv01z7rcjylh"; depends=[amap cluster clValid fpc mzR xcms]; }; MSeasyTkGUI = derive2 { name="MSeasyTkGUI"; version="5.3.3"; sha256="0ihz8vr2wbgy88bzssilgvlhkbr13jznfjvnqy73wpchqgwy0wy6"; depends=[MSeasy]; }; MSwM = derive2 { name="MSwM"; version="1.2"; sha256="01l23ia20y3nchykha4vz6sa757zmbvgx2315cacxfcqk9rgs08c"; depends=[nlme]; }; + MTDrh = derive2 { name="MTDrh"; version="0.1.0"; sha256="0ass3b90nr4i0y7v30hk8xhq3hj9bxaxcsr4f8wfi0lnvzfv6aaa"; depends=[]; }; MTS = derive2 { name="MTS"; version="0.33"; sha256="0i7kpgsw56vvgrdgddn83i9lzjlb72z4llffqai29qq0m1i7hm65"; depends=[fGarch mvtnorm Rcpp]; }; - MTurkR = derive2 { name="MTurkR"; version="0.7.0"; sha256="0hs5qj4ngjpwgm0wjhkdf68cpyvvmf1d49za3mighqpqzib9z36w"; depends=[base64enc curl digest XML]; }; + MTurkR = derive2 { name="MTurkR"; version="0.8.0"; sha256="0q498chr2s67ai7lfxi6kdficqbs5sxj9asyv69z2a37fmsr4va7"; depends=[base64enc curl digest XML]; }; MTurkRGUI = derive2 { name="MTurkRGUI"; version="0.1.5"; sha256="1rlgz80na0v1nx70cda1fzyswlb1lg5kcx64zl9dcqy6accsrpmp"; depends=[curl MTurkR XML]; }; MUCflights = derive2 { name="MUCflights"; version="0.0-3"; sha256="03ksvv5nyzlqiml1nz405r3yqb2cl35kpm1h61zcv2nqq8cxqshs"; depends=[geosphere NightDay RSQLite sp XML]; }; MVA = derive2 { name="MVA"; version="1.0-6"; sha256="09j9frr6jshs6mapqk28bd5jkxnr1ghmmbv6f4zz0lrg81zjizl3"; depends=[HSAUR2]; }; MVB = derive2 { name="MVB"; version="1.1"; sha256="0an8b594rknlcz6zxjva6br8f34sgwdi2jil3xh1xzb5fa55dw0f"; depends=[Rcpp RcppArmadillo]; }; - MVN = derive2 { name="MVN"; version="4.0"; sha256="1ql50ch6qig7r0xnfv5f74k3vc32k04jgmvjbndgyzbacn2ibrm7"; depends=[MASS moments mvoutlier nortest plyr psych robustbase]; }; - MVR = derive2 { name="MVR"; version="1.30.3"; sha256="164q259c1j7da3mcc79zjyisxzr5p4rdaps4dcxfvpfbwg1wkdyj"; depends=[statmod]; }; + MVLM = derive2 { name="MVLM"; version="0.0.1"; sha256="1vl6wn7ryn529bhx2l5frw89dqn79bnk4qfih4mj1dyycwh3h4fj"; depends=[CompQuadForm]; }; + MVN = derive2 { name="MVN"; version="4.0.2"; sha256="0k8fbhnw2lbjgafab4m6j7nkzclj1226fdiv8bmv5vcm6g82nb19"; depends=[MASS moments mvoutlier nortest plyr psych robustbase]; }; + MVR = derive2 { name="MVR"; version="1.31.0"; sha256="114qv235dmbmdlg2dssbgn0bj78r6khg58xswvv98d58kfypw581"; depends=[statmod]; }; MVT = derive2 { name="MVT"; version="0.3"; sha256="0vinlv3d5daf8q7pd9xgs51nxz2njgdba5750vygmv883srlzi9d"; depends=[]; }; - MVar_pt = derive2 { name="MVar.pt"; version="1.6"; sha256="09ln186nx713kp9kdi4zwxmg7kjzksh7skxkgf1mq8szvvzb1r8n"; depends=[]; }; - MXM = derive2 { name="MXM"; version="0.8"; sha256="0929nk4h7vjs0fx7m9mvm5lrby5bp6jwjbzgv71h1vpgbm2sfqdm"; depends=[betareg doParallel foreach Hmisc lme4 MASS nnet ordinal pscl quantreg ROCR speedglm survival TunePareto]; }; + MVar_pt = derive2 { name="MVar.pt"; version="1.9.6"; sha256="0gwprgf22lna4d8bifq381p5hv7ws3nnj08m6rrjnisgl158459w"; depends=[]; }; + MWLasso = derive2 { name="MWLasso"; version="1.3.1"; sha256="11lyk46lmjcd60q0mixi41b8ybjgyp1xi18g3ag4450xyhw3r17s"; depends=[]; }; + MWRidge = derive2 { name="MWRidge"; version="1.0.0"; sha256="17kvs9npr1ff24z3pv9x2qnfwyy6w3hc7hm60ynzbjlk2rr11xr9"; depends=[glmnet]; }; + MXM = derive2 { name="MXM"; version="0.9.8"; sha256="1bi8lkw3dx5m2p6r8yr60ysxs0ijkaahjvh7c8q7vlg8116fdvbp"; depends=[doParallel e1071 energy foreach lme4 MASS nnet ordinal quantreg relations Rfast speedglm survival visNetwork]; }; MaXact = derive2 { name="MaXact"; version="0.2.1"; sha256="1n7af7kg54jbr09qk2a8gb9cjh25cnxzj2snscpn8sr8cmcrij0i"; depends=[mnormt]; }; Maeswrap = derive2 { name="Maeswrap"; version="1.7"; sha256="0cnnr5zq7ax1j7dx7ira7iccqppc6qpdjghjarvdb2zj0lf69yyb"; depends=[geometry lattice rgl stringr]; }; + MagneticMap = derive2 { name="MagneticMap"; version="1.0"; sha256="1634bk6x92z01gyiy89c1g6z5cjsj8pf4f358y7rk2kppmfz4cf7"; depends=[scatterplot3d]; }; MakefileR = derive2 { name="MakefileR"; version="1.0"; sha256="1pfjic2lsar8ghbb6byr4rqrs30qrgfih092z4rxdpsiwkk3y7l1"; depends=[magrittr]; }; - ManlyMix = derive2 { name="ManlyMix"; version="0.1.2"; sha256="0fa1wqz3fnq838azqd42937l5z1sk76cxbg8vpzx7sxxmn1v1a08"; depends=[]; }; - ManyTests = derive2 { name="ManyTests"; version="1.1"; sha256="11xk3j2q7w6b6ljmp7b8gni0khpmpvcvzwxypy0w8ihi2gaczsxj"; depends=[]; }; + Mangrove = derive2 { name="Mangrove"; version="1.21"; sha256="1qf3fjzf0sb6fqbfdbxwbw6wah3gg2qran4mgg13hcmk4n3j0hxp"; depends=[]; }; + ManifoldOptim = derive2 { name="ManifoldOptim"; version="0.1.2"; sha256="0ywkd4i9bxavxffh89sxcz995vfnk1czcvcjdwzbvrpxa5fwbx79"; depends=[Rcpp RcppArmadillo]; }; + ManlyMix = derive2 { name="ManlyMix"; version="0.1.7"; sha256="10m5kfs8n34frygn36ryn4h8128p4smmr5s2ngbbj05dchni09ai"; depends=[]; }; + ManyTests = derive2 { name="ManyTests"; version="1.2"; sha256="1mi7wvnkcd95126f1h8vl8skn397yd2zqvcswprqar54p161wgyi"; depends=[]; }; Map2NCBI = derive2 { name="Map2NCBI"; version="1.1"; sha256="19gafyql767f1p4fxdw7d5a8z1b4vg7jfrvzaml5x16fj6c78fjm"; depends=[]; }; - MapGAM = derive2 { name="MapGAM"; version="0.7-5"; sha256="0bpswdi7iic7hsqrwcxwv27n4095m292nv5db6d4mj9gvp13h7i7"; depends=[gam maptools sp]; }; - MareyMap = derive2 { name="MareyMap"; version="1.3.1"; sha256="1ql9mvmlw2m8b35dmv6c7338jzmnizdjwxf7m12m55cf6vf8lph8"; depends=[tkrplot]; }; - MarkowitzR = derive2 { name="MarkowitzR"; version="0.1502"; sha256="0srrmzr4msn04w5f6s6qs51db8jccpfj10sighsv1l7d056n2xjn"; depends=[gtools matrixcalc sandwich]; }; - MasterBayes = derive2 { name="MasterBayes"; version="2.52"; sha256="12ka2l4x6psij7wzbb98lwx5shgwzn5v44qfpiw1i6g236yp0mhm"; depends=[coda genetics gtools kinship2]; }; - MatchIt = derive2 { name="MatchIt"; version="2.4-21"; sha256="02kii2143i8zywxlf049l841b1y4hqjwkr1cnyv6b8b7y7lz2m5v"; depends=[MASS]; }; + MapGAM = derive2 { name="MapGAM"; version="1.0"; sha256="1hzv3sy2szxl4fhnnzlwagh3qm4z22cbhiwi8whgn5ymwlnw0pca"; depends=[gam maptools sp survival]; }; + MareyMap = derive2 { name="MareyMap"; version="1.3.3"; sha256="0d8prx08321f0p42xbnf0b1446fq4km35xs3ih5ssbdm14q7fnln"; depends=[tkrplot]; }; + MarkowitzR = derive2 { name="MarkowitzR"; version="0.9900.0"; sha256="1wyqlgmb376dsvx7nixpbynjzp7xpmsh4fx9s7nai6fhjb50mxha"; depends=[gtools matrixcalc sandwich]; }; + MasterBayes = derive2 { name="MasterBayes"; version="2.54"; sha256="016xk43mhl4249p3wsx0v68b69nmp7zllaa0c1in5l18g5v0npi0"; depends=[coda genetics gtools kinship2]; }; + MatchIt = derive2 { name="MatchIt"; version="2.4-22"; sha256="16j7kwnr94736p58a9fsjydkbixm71jgdmgfcvmr26c8r5q89042"; depends=[MASS]; }; + MatchItSE = derive2 { name="MatchItSE"; version="1.0"; sha256="01ghv3hdlsx6ypvsh7k0mi20yc8vg7z602mhcprhhh97qsb81v6h"; depends=[Rcpp RcppArmadillo]; }; MatchLinReg = derive2 { name="MatchLinReg"; version="0.7.0"; sha256="015s3xdaj56prq8lsdry3ibjkrb6gg0fwgzjh496gdx5axvpbk8g"; depends=[Hmisc Matching]; }; Matching = derive2 { name="Matching"; version="4.9-2"; sha256="0lv5b41l797c4bl2rzmdqzjnn47zpvvcv3md3xwxvvz5knxky5x4"; depends=[MASS]; }; MatchingFrontier = derive2 { name="MatchingFrontier"; version="1.0.0"; sha256="1djlkx7ph8p60n2m191xq9i01c2by4vpmjj25mbxy5izxm5123aa"; depends=[igraph MASS segmented]; }; - Matrix = derive2 { name="Matrix"; version="1.2-4"; sha256="1ikrzc17bi0b5ldz63cgyfjmgf7pp8xv7xnx131n3gigl31nz6wd"; depends=[lattice]; }; - Matrix_utils = derive2 { name="Matrix.utils"; version="0.5"; sha256="04ss99wbpcm7ad5kkznppyf5fa869fgghk4rhv0nds1fdp17hrzl"; depends=[Matrix]; }; - MatrixCorrelation = derive2 { name="MatrixCorrelation"; version="0.8.0"; sha256="1xn21ngxyr3jj07whlclpikmp1hd59wp3i76ql2r8vwczx8nwxil"; depends=[plotrix pracma progress rARPACK Rcpp RcppArmadillo]; }; + Matrix = derive2 { name="Matrix"; version="1.2-8"; sha256="1dyv42d7ranb85y8hvi57hbg5xnvhdzqn56wcq3qmhazqj3s3liw"; depends=[lattice]; }; + Matrix_utils = derive2 { name="Matrix.utils"; version="0.9.5"; sha256="057lms2xdp13wcglg8hg95blj60f5zhva26jlkm2z1vi11jiy728"; depends=[grr Matrix]; }; + MatrixCorrelation = derive2 { name="MatrixCorrelation"; version="0.9"; sha256="0yax7ali6g8i5qwgrhg1m6f8vi0c2rlyfjc2l9ar0kj5zg1dix86"; depends=[plotrix pracma progress Rcpp RcppArmadillo RSpectra]; }; MatrixEQTL = derive2 { name="MatrixEQTL"; version="2.1.1"; sha256="1bvfhzhvm1psgq51kpjcpp7bidaxcrxdigmv6abfi3jk5kyzn5ik"; depends=[]; }; + MatrixLDA = derive2 { name="MatrixLDA"; version="0.1"; sha256="19q6wl8fc6jzn7544qnlpzfh9v0xlg9cr78l6k8kx6kzjnbnyh9z"; depends=[glasso plyr Rcpp RcppArmadillo]; }; MatrixModels = derive2 { name="MatrixModels"; version="0.4-1"; sha256="0cyfvhci2p1vr2x52ymkyqqs63x1qchn856dh2j94yb93r08x1zy"; depends=[Matrix]; }; MaxPro = derive2 { name="MaxPro"; version="3.1-2"; sha256="1y2g8a8yvzb24dj0z82nzfr6ylplb9sbi2dmj7f3pb4s3yr5zm8y"; depends=[nloptr]; }; - MaxentVariableSelection = derive2 { name="MaxentVariableSelection"; version="1.0-0"; sha256="0001kj0wnma4gmndxwz11dq6jq7kgcrvlw9iikf2w15lnmmihwzl"; depends=[ggplot2 raster]; }; - MazamaSpatialUtils = derive2 { name="MazamaSpatialUtils"; version="0.4.3"; sha256="0ysfs03as0h4d0nwk40fhm6v9rf1rr0mfwdc5d5y8iigagqzcj9s"; depends=[dplyr rgdal rgeos rvest sp stringr]; }; + MaxSkew = derive2 { name="MaxSkew"; version="1.0"; sha256="1ylz51b9k6bi6xm1aarv7aff1n35bwb66nk1vzzkyqn9pylhmcmw"; depends=[]; }; + MaxentVariableSelection = derive2 { name="MaxentVariableSelection"; version="1.0-2"; sha256="0mk5h9bafy1ndi1h6vcjh285xfj38gjpiz6n8xcmp8zh6vi6gx70"; depends=[ggplot2 raster]; }; + MazamaSpatialUtils = derive2 { name="MazamaSpatialUtils"; version="0.4.8"; sha256="007i1zmklcmj76kmyl60wvcgb9vzrn677k81n5mmfz36vr0zkp8f"; depends=[dplyr lubridate rgdal rgeos rvest sp stringr xml2]; }; McSpatial = derive2 { name="McSpatial"; version="2.0"; sha256="18nmdzhszqcb5z9g8r9whxgsa0w3g7fk7852sgbahzyw750k95n4"; depends=[lattice locfit maptools quantreg RANN SparseM]; }; Mcomp = derive2 { name="Mcomp"; version="2.05"; sha256="0wggj0h0qxjwym1vz1gk9iwnwia4lpjlk6n46l6hinsdax3g221y"; depends=[forecast tseries]; }; - MeanShift = derive2 { name="MeanShift"; version="1.0-2"; sha256="1dj3zgqyggl4vyz2j008c33600j7cjkqh20zs46wy95yfhjj6jf9"; depends=[]; }; + MeanShift = derive2 { name="MeanShift"; version="1.1-1"; sha256="02zf27xvk2zlmgxfyl5pwl2rdq8c30fb52x1mbpvlhmxjbhg6fsn"; depends=[wavethresh]; }; MedOr = derive2 { name="MedOr"; version="0.1"; sha256="1rwc14s16lnzgb78ac2017hv9pss7zw7nw3y7vrvq1qx4fgiw6f8"; depends=[]; }; MediaK = derive2 { name="MediaK"; version="1.0"; sha256="19cmxl2wksw9kvjsfn1m4nkr5gpcx6bk0sqrabj1n0dla1l32v2a"; depends=[Rcpp RcppEigen]; }; - Mediana = derive2 { name="Mediana"; version="1.0.2"; sha256="1q3i5j319gb8h3qvz2m1mds2a1042dzs8x5xln0v6fzc0k4nzyjr"; depends=[doParallel doRNG foreach MASS mvtnorm ReporteRs survival]; }; + Mediana = derive2 { name="Mediana"; version="1.0.4"; sha256="0kk9gv2dzhg1y8s68aws327ysx33cy622djbfd5isbr7ikv2h80v"; depends=[doParallel doRNG foreach MASS mvtnorm ReporteRs survival]; }; + MendelianRandomization = derive2 { name="MendelianRandomization"; version="0.2.0"; sha256="1rnsjrvshj41srbzrplfhqw5y68dab489rjn5bdhrk1lm0vz0zvc"; depends=[ggplot2 knitr plotly rmarkdown robustbase stargazer]; }; MenuCollection = derive2 { name="MenuCollection"; version="1.2"; sha256="0v3flicfnln9qld150yk3rfldvsr4dllhq80l02n1lq6px38nf2s"; depends=[gplots RGtk2 RGtk2Extras]; }; MergeGUI = derive2 { name="MergeGUI"; version="0.2-1"; sha256="1hx03qv5jyjjmqdvylc3kz5dl5qsdqwlirjbrnxrw7grkgkhygap"; depends=[cairoDevice ggplot2 gWidgetsRGtk2 rpart]; }; MetABEL = derive2 { name="MetABEL"; version="0.2-0"; sha256="0rqjv85mgswrbbp8b8ip6cdmz0cvfy9lm5mcr8a7h38rzgx3g3i3"; depends=[]; }; + MetFns = derive2 { name="MetFns"; version="2.2.0"; sha256="16l55wrbxhpyy97ihw606s41zbvmshygdfjxladhca0pf7zpj29y"; depends=[astroFns fBasics lubridate plotrix spatial]; }; MetNorm = derive2 { name="MetNorm"; version="0.1"; sha256="0vfi3k0yp2dz47gwj1n1avs3ji0a2nlrrljz5d0l66zfh4474jb4"; depends=[]; }; + MetProc = derive2 { name="MetProc"; version="1.0.1"; sha256="1z6538pij1rq5wv9s8rjcn0sck15y26asv4vamav8a6s4135ia3q"; depends=[fastcluster gplots]; }; MetSizeR = derive2 { name="MetSizeR"; version="1.1"; sha256="11hdmpvnszr6pn9ihb3zjy9miksz1fs4piry153z4dic8pjydkax"; depends=[cairoDevice gWidgets gWidgetsRGtk2 MetabolAnalyze mvtnorm]; }; MetStaT = derive2 { name="MetStaT"; version="1.0"; sha256="0400gx6i8xlkm51da98ap91c3hgrkgfgxswn0plaxfry3625khkp"; depends=[abind MASS pls]; }; + MetaAnalyser = derive2 { name="MetaAnalyser"; version="0.2.1"; sha256="0k58325nb7svihhpga7kdbryr9bi5470qsb8aa5llpiggs8j7sfz"; depends=[DT ggvis rstudioapi shiny]; }; MetaCycle = derive2 { name="MetaCycle"; version="1.1.0"; sha256="1kzdk21xpbvwibs8501zwdb9lzj7g5nv2zqaskg9x0szshhg8vpp"; depends=[gnm]; }; MetaDE = derive2 { name="MetaDE"; version="1.0.5"; sha256="1ijg64bri5jn2d3d13q1gvvfyqmbh6gn0lk6dkihixf0jwvjdyqi"; depends=[Biobase combinat impute survival]; }; - MetaLandSim = derive2 { name="MetaLandSim"; version="0.4.2"; sha256="00lx78ryrhqcd7p9nikmfs80ysid11b2cg4nnf857h3lgnms78rr"; depends=[Biobase e1071 fgui googleVis maptools minpack_lm raster rgeos rgrass7 sp spatstat]; }; + MetaIntegrator = derive2 { name="MetaIntegrator"; version="1.0.3"; sha256="0611k497ixy0f51lmqzs08zqqq5krrxrm7m0xqdl18gkwrw3w656"; depends=[Biobase DBI GEOmetadb GEOquery ggplot2 gplots multtest preprocessCore reshape rmeta Rmisc RMySQL RSQLite stringr]; }; + MetaLandSim = derive2 { name="MetaLandSim"; version="0.5.5"; sha256="11dwmhkka0yabgvcxys2w039xwd1brb4kd1g1ahs45cin7w79xvl"; depends=[Biobase e1071 fgui googleVis maptools minpack_lm raster rgeos rgrass7 sp spatstat]; }; MetaPCA = derive2 { name="MetaPCA"; version="0.1.4"; sha256="14g4v3hyxnds4l2q36mpz282yqg8ahgdw3b0qmj0xg17krrf5l2s"; depends=[foreach]; }; MetaPath = derive2 { name="MetaPath"; version="1.0"; sha256="1vvpfv6yc4rd4apqfs2yzm97xxsv43ghwqnjq6w1xrc4pdx2p634"; depends=[Biobase genefilter GSEABase impute]; }; MetaQC = derive2 { name="MetaQC"; version="0.1.13"; sha256="11595ggjr46z6xiwmhiyx1sydaq68l18y7mgdwxsg81g03ck9x1r"; depends=[foreach iterators proto]; }; MetaSKAT = derive2 { name="MetaSKAT"; version="0.60"; sha256="13qffirv0lnj0bflzjpr2hd0d8j4bkakyfjvicp40f0v4v3cack2"; depends=[SKAT]; }; + MetaboList = derive2 { name="MetaboList"; version="1.0"; sha256="0gfv093l5s5gy98qcz49kr1qk8afkz1hm0hrd9a7k4r54fn6vx3c"; depends=[enviPick]; }; + MetaboQC = derive2 { name="MetaboQC"; version="1.0"; sha256="1hm0ndwda1ciyyg8igkpaalvvdyd7aq5wnl9gzza8fr1l9fxp4a2"; depends=[plyr]; }; MetabolAnalyze = derive2 { name="MetabolAnalyze"; version="1.3"; sha256="0cl76x6imx4a95wd74xx5s8i2vg8wq3inqgakvgzmkwxad6qhrqp"; depends=[ellipse gplots gtools mclust mvtnorm]; }; + MetaheuristicFPA = derive2 { name="MetaheuristicFPA"; version="1.0"; sha256="096k866mgrdgj55rzvdj080z80hzlj0667mydpz7gjaqdfriw8jg"; depends=[Rcpp RcppArmadillo]; }; Metatron = derive2 { name="Metatron"; version="0.1-1"; sha256="0apz2k3za19px1bcg4ls0axaljrpxnqhs86b6s862c370sspc1x8"; depends=[lme4 Matrix mpt]; }; Meth27QC = derive2 { name="Meth27QC"; version="1.1"; sha256="0ad30svs2kjzmmyvcm0jmv64iyq7slp1x1xl35h2rv1b6zbd4658"; depends=[gplots]; }; MethComp = derive2 { name="MethComp"; version="1.22.2"; sha256="0f9l36d00x054yqgbw0dckc7ldlgap6vnbb03n6n5yz47xxg0ic3"; depends=[nlme]; }; + MethodCompare = derive2 { name="MethodCompare"; version="0.1.0"; sha256="0zl20v8k8bhn3skbpzdiglywrqghwf0r42q2jn8zmq4x0drvjzpl"; depends=[nlme]; }; Methplot = derive2 { name="Methplot"; version="1.0"; sha256="0aaqss9zfn55qi45jffxkksnkw510npjnkygafx49vl77bkagqh5"; depends=[ggplot2 reshape]; }; + MethyBayes = derive2 { name="MethyBayes"; version="0.1.0"; sha256="1ibjmnfx3d2hw6gjcyig6kv4q7p26am2xvj14ksjv9kglw2q4g1b"; depends=[]; }; MethylCapSig = derive2 { name="MethylCapSig"; version="1.0.1"; sha256="16ch9aldr6a9jn42h387n7qvnzs0yx28f2yj6xq0kp476q7rf4ql"; depends=[geepack]; }; Metrics = derive2 { name="Metrics"; version="0.1.1"; sha256="1yqhlsmhh9sl7qngl85b7qb980s54h13wwznpakyvvwlar64yqrw"; depends=[]; }; - MfUSampler = derive2 { name="MfUSampler"; version="1.0.0"; sha256="0jl0vnjj0kyy49l51nh6xzp53h8wcb603v2p9wznplimskays2rh"; depends=[ars coda HI]; }; + MfUSampler = derive2 { name="MfUSampler"; version="1.0.2"; sha256="0b79wm02p4k67pi0zmcs7bqwsgrnf2pqf2mbb2kylmgsjd0nj1gq"; depends=[ars coda HI]; }; + MiRAnorm = derive2 { name="MiRAnorm"; version="1.0.0"; sha256="154wv0j82xyc4y5cd2czh0q8kzhgrk6qsn0ahc1zn3fnrzc9fgz0"; depends=[ArgumentCheck cluster dendextend ggplot2 MASS npmv plyr reshape2]; }; MiRSEA = derive2 { name="MiRSEA"; version="1.1"; sha256="0jpl6ws5yx1qjzdnip9a37nmvx81az4cbsjm57x613qjpwmg6by3"; depends=[]; }; + MiSPU = derive2 { name="MiSPU"; version="1.0"; sha256="1l6q0fm5z5i6gigr940h8kc5rka08psmhcprp8grmsxk3qy2kply"; depends=[ape aSPU cluster Rcpp RcppArmadillo vegan]; }; MiST = derive2 { name="MiST"; version="1.0"; sha256="0gqln792gixqfh201xciaygmxbafa0wyv5gpbg9w5zkbbv44wrfk"; depends=[CompQuadForm]; }; - MicSim = derive2 { name="MicSim"; version="1.0.11"; sha256="0g6rqdk6vxxymkg6c0yqhhv7za1sk30m4wpi954cvx50swszy4ps"; depends=[chron rlecuyer snowfall]; }; - MicroDatosEs = derive2 { name="MicroDatosEs"; version="0.7.1"; sha256="0avgp99krlcaava7m32gj7ffz2rrj8g1zvaipk7bgsadnnpljmsk"; depends=[Hmisc memisc]; }; + MicSim = derive2 { name="MicSim"; version="1.0.12"; sha256="186m0p08h6x8zhk82sm1hsyrqdl3p872xn03ysv3g5bldglc9677"; depends=[chron rlecuyer snowfall]; }; + MicroDatosEs = derive2 { name="MicroDatosEs"; version="0.8.2"; sha256="0k0hmi3ciipizmgjw1i5rrsg34yx21s1msn40vc4qc9s1n4wd8dl"; depends=[readr]; }; MicroStrategyR = derive2 { name="MicroStrategyR"; version="1.0-1"; sha256="0a6bk0wnwx8zy9081n7wb12lidgckrhn350r0q5m6aa82l6l8ihi"; depends=[gWidgetsRGtk2]; }; MigClim = derive2 { name="MigClim"; version="1.6"; sha256="171pnalidyw0v2fcjdc3kyrq5kg035kwj5xl8zwgn3hlanpaljvp"; depends=[raster SDMTools]; }; MindOnStats = derive2 { name="MindOnStats"; version="0.11"; sha256="13995v4n0hfb53w02jk81pl7nazkvqwwv87y1sr99jr9ppzc08mz"; depends=[]; }; Miney = derive2 { name="Miney"; version="0.1"; sha256="0sgln0653rgglinr8rns5s2az0lgyp9slmynyhhhs265grkhrfj0"; depends=[]; }; MissMech = derive2 { name="MissMech"; version="1.0.2"; sha256="1b7i1balfl1cqr3l4l4wxlahk2gmawzv9rhyibwzf0yp60cb1sv9"; depends=[]; }; - MissingDataGUI = derive2 { name="MissingDataGUI"; version="0.2-4"; sha256="0ixlybm57r1pdsnibg429hzbwh70brl8j8gjfzx952c69znkkjwh"; depends=[cairoDevice GGally ggplot2 gWidgetsRGtk2 reshape]; }; + MissingDataGUI = derive2 { name="MissingDataGUI"; version="0.2-5"; sha256="0drbm87ka17avg6fmswjilgnz9c3azwd0236s8yfms24k9k77vnd"; depends=[cairoDevice GGally ggplot2 gWidgetsRGtk2 reshape]; }; MitISEM = derive2 { name="MitISEM"; version="1.0"; sha256="03305ds3rgr29z4idaxzsm83igiygna2sqd5vpixklngsrp8w341"; depends=[mvtnorm]; }; - MixAll = derive2 { name="MixAll"; version="1.1.1"; sha256="02vbxpgyh2lw2xw04k0pfjs682xzha2wpr6w7qdg42mg335l12h3"; depends=[Rcpp rtkpp]; }; - MixGHD = derive2 { name="MixGHD"; version="1.8"; sha256="0m115ws1gh5mbjaql38piwjg7463mx32ridpbics3406g7p3ba6w"; depends=[Bessel cluster e1071 ghyp MASS mixture mvtnorm numDeriv]; }; + MixAll = derive2 { name="MixAll"; version="1.2.0"; sha256="09wwisdwgvcsnvb9jdr0p0gyai5ab06yjyqhac1i7jg6wa2r8m3g"; depends=[Rcpp rtkore]; }; + MixGHD = derive2 { name="MixGHD"; version="2.1"; sha256="0f3ppj18acvr35dbgqibmpd58cymq3baw3jdrl4ranlk0nj6h26r"; depends=[Bessel cluster e1071 ghyp MASS mixture mvtnorm numDeriv]; }; MixMAP = derive2 { name="MixMAP"; version="1.3.4"; sha256="0gxghym5ghbyxf589hda2fhv5l3x5jvm6i40x5xdwx4hadcn8k9a"; depends=[lme4]; }; + MixRF = derive2 { name="MixRF"; version="1.0"; sha256="1av1wx7wmfc3z8a4bc6g3i3b807nc28n3s2rs3yh0rcwq1pfl0ir"; depends=[doParallel foreach lme4 randomForest]; }; + MixSIAR = derive2 { name="MixSIAR"; version="3.1.7"; sha256="0myn50sdmp83bhzm66sa61xwxv3lka427mv1ynhqshaqrb5flj35"; depends=[coda compositions ggmcmc ggplot2 lattice MASS R2jags RColorBrewer reshape reshape2 rjags]; }; MixSim = derive2 { name="MixSim"; version="1.1-2"; sha256="0p67x2q4rb7y5484gi4z8r3qxpav1hdmgw1wdxmiz363p6f8972v"; depends=[MASS]; }; MixedDataImpute = derive2 { name="MixedDataImpute"; version="0.1"; sha256="123c9i3znv53ikfnga1z9gq5bdl4vyww89967255wg5dzb7w00cn"; depends=[BH gdata Rcpp RcppArmadillo]; }; - MixedPoisson = derive2 { name="MixedPoisson"; version="1.0"; sha256="1w826s2icdflfgyb31dvf077b6fx35idajyqv7bln1fr8wfb7zyf"; depends=[gaussquad MASS]; }; + MixedPoisson = derive2 { name="MixedPoisson"; version="2.0"; sha256="0g5mpzj0wda6g46q3cg5mm3x4dvpz9gdclzn2m17l62lzny2i10p"; depends=[gaussquad MASS Rmpfr]; }; MixedTS = derive2 { name="MixedTS"; version="1.0.4"; sha256="0gwcg115idbcm5llgzqsygvqgshq8dywawxkaddsmw4sbbhj4555"; depends=[MASS]; }; - MixtureInf = derive2 { name="MixtureInf"; version="1.0-1"; sha256="1cq8zzhhb6vg545n9aw1b9fhx025zy75dd6pw161svsb5776py5d"; depends=[]; }; + MixtureInf = derive2 { name="MixtureInf"; version="1.1"; sha256="12qcflmrpzh4w5b40xq5qicks6p0cwqpf5k84pwabkjb168afddv"; depends=[quadprog]; }; MoTBFs = derive2 { name="MoTBFs"; version="1.0"; sha256="09ymfgw6psc1y0dczvsrsw5cki58wn0d8vj56ydfylrxn24g3jfq"; depends=[bnlearn lpSolve quadprog]; }; Mobilize = derive2 { name="Mobilize"; version="2.16-4"; sha256="16vdvpwspa0igb52zvzyk0if9l4wq1hm8y42572i8sh1m82wyyfs"; depends=[ggplot2 Ohmage reshape2 wordcloud]; }; Modalclust = derive2 { name="Modalclust"; version="0.6"; sha256="16h90d30jwdrla5627rva0yf69n0zib9z5fl3k5awlqfscz4fw26"; depends=[class mvtnorm zoo]; }; ModelGood = derive2 { name="ModelGood"; version="1.0.9"; sha256="1y99a7bgwx167pncxj00lbw3cdjj23fhhzl8r24hwnhxr984kvzl"; depends=[prodlim]; }; - ModelMap = derive2 { name="ModelMap"; version="3.3.2"; sha256="04rnprv5xjk9l89pc7pvkvwpv0habd15ihl1ah792lwl44ibx84b"; depends=[corrplot fields HandTill2001 mgcv PresenceAbsence randomForest raster rgdal]; }; - Momocs = derive2 { name="Momocs"; version="1.0.0"; sha256="03gqylk1a6sf4ypxp7gzsv91m6iarfak6rby0i1666wzi4nn5zjl"; depends=[ape dplyr geometry geomorph ggplot2 jpeg magrittr MASS plyr reshape2 sp]; }; + ModelMap = derive2 { name="ModelMap"; version="3.3.5"; sha256="1rmm1a2nw91kzvxpvq9qhlag0dhihis7mgscgslqia6z8fr86qvs"; depends=[corrplot fields HandTill2001 mgcv PresenceAbsence randomForest raster rgdal]; }; + ModelMetrics = derive2 { name="ModelMetrics"; version="1.1.0"; sha256="119xxmzb5biq7k1yxqsf0jmmarmfn6lds9x9hfgv593xlpym6za8"; depends=[Rcpp]; }; + Momocs = derive2 { name="Momocs"; version="1.1.0"; sha256="0r9q1ag25fcj9zl0vd5d6c6ijpildmqi2p7fnmhcp023x026sy2v"; depends=[ape dplyr geometry geomorph ggplot2 jpeg magrittr MASS plyr reshape2 sp]; }; Mondrian = derive2 { name="Mondrian"; version="1.0-0"; sha256="07r64q518diphai951pw4vfaw4sd6bqwhi6q5cp4pcl3aqjynkmj"; depends=[RColorBrewer]; }; MonetDB_R = derive2 { name="MonetDB.R"; version="1.0.1"; sha256="1r7vki0rrzwcrfg4f2lfx30g614vf2xi62qb1rs21a9j5741lxlx"; depends=[codetools DBI digest]; }; - MonetDBLite = derive2 { name="MonetDBLite"; version="0.2.0"; sha256="1l6bkymssryw22m849wdcmza9abg0cwgasdq9hq4z1m9fkc5xais"; depends=[]; }; - MonoPhy = derive2 { name="MonoPhy"; version="1.1"; sha256="0vif66c5lkn1mqfhnk4di5jd5k86wf545a8pi0wlamjy5828n9jx"; depends=[ape phangorn phytools RColorBrewer taxize]; }; - MonoPoly = derive2 { name="MonoPoly"; version="0.2-10"; sha256="03gzn7gq1dryjhkzs9z5i7bc8k8i7ilri26ifw772w8688pya05k"; depends=[quadprog]; }; - Morpho = derive2 { name="Morpho"; version="2.3.1.1"; sha256="02xmbkz5qm15k0skwqcgzjxwkv9aas5ygi4dchc656j8r7spw6wp"; depends=[colorRamps doParallel foreach Matrix Rcpp RcppArmadillo rgl Rvcg yaImpute]; }; + MonetDBLite = derive2 { name="MonetDBLite"; version="0.3.1"; sha256="1lbymf7kh3jag7qhb873mw2g66xp1589w2linp0r7kx0ia86rqd3"; depends=[codetools DBI digest]; }; + MonoInc = derive2 { name="MonoInc"; version="1.1"; sha256="14rykw3bfj0vznz0rw4vsg1k4vanfv9cy867vspw966ncl4bw70h"; depends=[compare doParallel foreach iterators sitar]; }; + MonoPhy = derive2 { name="MonoPhy"; version="1.2"; sha256="0997kg8hfwgsc9s155z0wrf7rrhn3vf6681j9psjl3hsspg08z2r"; depends=[ape phangorn phytools RColorBrewer taxize]; }; + MonoPoly = derive2 { name="MonoPoly"; version="0.3-8"; sha256="1dd2m4c726j94cxwsma33sc166c9656m7sl2b29bg6i0bmpvpmd2"; depends=[quadprog]; }; + Morpho = derive2 { name="Morpho"; version="2.4.1.1"; sha256="0wshfxxkbwwnj92law22wdfxw8hai1s576hi6gq2lda0684ccyvb"; depends=[colorRamps doParallel foreach MASS Matrix Rcpp RcppArmadillo rgl Rvcg]; }; MorseGen = derive2 { name="MorseGen"; version="1.2"; sha256="1kq35n00ky70zmxb20g4mwx0hn8c5g1hw3csmd5n6892mbrri8s9"; depends=[]; }; + MortHump = derive2 { name="MortHump"; version="0.1"; sha256="0wks6kis1fa7vgcmwhaq57zrlk5m0c5rgkfipz64phky02c7v4c2"; depends=[demography HMDHFDplus Matrix minpack_lm MortalitySmooth RColorBrewer WeightedCluster]; }; MortalitySmooth = derive2 { name="MortalitySmooth"; version="2.3.4"; sha256="1clx8gb8jqvxcmfgv0b8jyvh39yrmcmwr472j9g3ymm95m4hr8fq"; depends=[lattice svcm]; }; - MotilityLab = derive2 { name="MotilityLab"; version="0.2-4"; sha256="0fgv3w1231r85jv7v59vvfz9bcb4yrdvx89pk9g6zcspxixmc0c8"; depends=[ellipse]; }; - MplusAutomation = derive2 { name="MplusAutomation"; version="0.6-3"; sha256="1zb4drqaswzwssky1bp69p3p8inqfdvxg2ji9bjrzf3vf0b5fl4p"; depends=[boot coda gsubfn lattice plyr texreg xtable]; }; + MotilityLab = derive2 { name="MotilityLab"; version="0.2-5"; sha256="080j548sp1c4yqqd7p7zgr70j1xyrw3fgjj1f521sgh84x5h2hbc"; depends=[ellipse]; }; + MplusAutomation = derive2 { name="MplusAutomation"; version="0.6-4"; sha256="151d2iq9v8d584ascpkjp9wjldc7n25wma14nn2wgcxwdh2nglpi"; depends=[boot coda gsubfn lattice pander plyr texreg xtable]; }; Mposterior = derive2 { name="Mposterior"; version="0.1.2"; sha256="16a7wvg41ld2bhbss480js5h12r41nl7jmc3y4jsbv1lr5py4ymy"; depends=[Rcpp RcppArmadillo]; }; MuFiCokriging = derive2 { name="MuFiCokriging"; version="1.2"; sha256="09p8wdmlsf21ibqyjigwdipcin3ij0naxcd035hqgfj76v20wiyv"; depends=[DiceKriging]; }; MuMIn = derive2 { name="MuMIn"; version="1.15.6"; sha256="08qac7d1w367wjsz7n9ydziacbf8np8w8mm9izbxd4pk3ibxwi5a"; depends=[Matrix]; }; MuViCP = derive2 { name="MuViCP"; version="1.3.2"; sha256="1wkiwdz4bblxf1zr57khljqkga9ks9aj1lnidvmhib94q6b8fnf4"; depends=[gtools MASS sm]; }; + MullerPlot = derive2 { name="MullerPlot"; version="0.1.2"; sha256="0am5brdmbh2mw74fbw9nha6h4qlhj8psg3142mql1ad99bd0zg4w"; depends=[RColorBrewer]; }; MultAlloc = derive2 { name="MultAlloc"; version="1.2"; sha256="0c3sqfaa08s8mk4yz77kh6q6v9ic5xp52g9prfw1k2kv4nw1k2qd"; depends=[Rglpk]; }; MultEq = derive2 { name="MultEq"; version="2.3"; sha256="0fshv7i97q8j7vzkxrv6f20kpqr1kp9v6pbw50g86h37l0jghj7r"; depends=[]; }; - MultNonParam = derive2 { name="MultNonParam"; version="1.2.1"; sha256="0fakycqvc8kqavdxmwsfww21f6ndlr0zwwwgh6asjffpdji798bb"; depends=[]; }; + MultNonParam = derive2 { name="MultNonParam"; version="1.2.5"; sha256="12jfpqs77qxzy7vj6adx9im3qmzqvgwk4bnxmr26k3z48css242l"; depends=[]; }; + MultiBD = derive2 { name="MultiBD"; version="0.2.0"; sha256="1qjfr8hx8sr5m8370yzi09r8jnh3i6907wzj3v4h83vmjh81db71"; depends=[BH Rcpp RcppParallel]; }; MultiCNVDetect = derive2 { name="MultiCNVDetect"; version="0.1-1"; sha256="0mfisblw3skm4y8phfg4wa0rdchl01wccarsq79hv63y78pfhh13"; depends=[]; }; - MultiGHQuad = derive2 { name="MultiGHQuad"; version="1.0"; sha256="1kkbwh9sinwnsc1qb2rsqdvhz1v0kg0av4m8av4dcmry2iq8kd3v"; depends=[fastGHQuad]; }; - MultiLCIRT = derive2 { name="MultiLCIRT"; version="2.9"; sha256="0anb041nd56rrryhv5w1pb0axxsfkqas177r6yf5h5gbc4vn3758"; depends=[limSolve MASS]; }; + MultiGHQuad = derive2 { name="MultiGHQuad"; version="1.2.0"; sha256="00prkn5awxrh365j1jz312har1x4p8v52a0sqfy00pqr44ncmqqq"; depends=[fastGHQuad Matrix mvtnorm]; }; + MultiLCIRT = derive2 { name="MultiLCIRT"; version="2.10"; sha256="0p0m6kbpx761l54fblnxccjadrjgv50lg24adppnrda4dbai60v9"; depends=[limSolve MASS]; }; MultiMeta = derive2 { name="MultiMeta"; version="0.1"; sha256="0gj0wk39fqd21xjcah20jk16jlfrcjarspbjk5xv74c9k4p5gmak"; depends=[expm ggplot2 gtable mvtnorm reshape2]; }; - MultiOrd = derive2 { name="MultiOrd"; version="2.1"; sha256="12y5cg06qyaz72gk3bi5pqkd55n72rz056y9va49znlsqph09x2x"; depends=[corpcor Matrix mvtnorm psych]; }; + MultiOrd = derive2 { name="MultiOrd"; version="2.2"; sha256="0j7zl6a2yxiixxjrhwrp5z4wdi04fqc8qfq2hp0q02k28dzjg1g1"; depends=[corpcor Matrix mvtnorm psych]; }; MultiPhen = derive2 { name="MultiPhen"; version="2.0.1"; sha256="1gvsivx8qz5yl4rc4db8sg2llg8s4bgkg22aanvr01h649a08m16"; depends=[abind epitools gplots HardyWeinberg MASS meta RColorBrewer]; }; MultiRR = derive2 { name="MultiRR"; version="1.1"; sha256="1jrhx3nlqwsv3i6r8fs142llw88qad41rsh0sj1pv1gb928zpvl3"; depends=[lme4 MASS]; }; MultiSV = derive2 { name="MultiSV"; version="0.0-67"; sha256="0924lvkx12aqjxxz8bwqdi4h9xc2acf8aynllx0m45ip5r4gh1g2"; depends=[nlme reshape]; }; MultinomialCI = derive2 { name="MultinomialCI"; version="1.0"; sha256="0ryi14d102kvxawls04hcw50n79jkcn29ill77lkfvj6nlzj8i5q"; depends=[]; }; - MultivariateRandomForest = derive2 { name="MultivariateRandomForest"; version="1.0"; sha256="1q1dcrn4wghhn0ailyvhvv3j2n62x1x4sd3lj20j7w1ix9zgsk6l"; depends=[bootstrap]; }; - MvBinary = derive2 { name="MvBinary"; version="1.0"; sha256="1r65kcx458b0y49035nd1sj7rm62fr2inc3qgg5k6saylqihncn9"; depends=[mgcv]; }; + MultivariateRandomForest = derive2 { name="MultivariateRandomForest"; version="1.1.2"; sha256="1xp1bdkp87kvgsg4q5b91r712l6sdvmlcvaychi72pvgv33a8x11"; depends=[bootstrap Rcpp]; }; + MvBinary = derive2 { name="MvBinary"; version="1.1"; sha256="1lrrxvphxv4gmlazx67q4bck9373nqylqgkwcjzwb52291a3zyiv"; depends=[mgcv]; }; Myrrix = derive2 { name="Myrrix"; version="1.1"; sha256="15w1dic6p983g2gajbm4pws743z68y0k2hxrdwx6ppnzn9rk07rs"; depends=[Myrrixjars rJava]; }; Myrrixjars = derive2 { name="Myrrixjars"; version="1.0-1"; sha256="0dy82l0903pl4c31hbllscfmxrv3bd5my5b2kv5d3x5zq0x99df0"; depends=[rJava]; }; NADA = derive2 { name="NADA"; version="1.5-6"; sha256="0y7njsvaypcarzygsqpqla20h5xmidzjmya4rbq39gg6gkc0ky27"; depends=[survival]; }; - NAM = derive2 { name="NAM"; version="1.4.4"; sha256="0410sxmqibw8iq398ha2ldf7p2vkqiryhfd176njjb8zxy9nixal"; depends=[randomForest Rcpp]; }; + NAEPprimer = derive2 { name="NAEPprimer"; version="1.0.1"; sha256="19p1livdnayfcl88f8r9x1vg30x522q8lgx66pfgwpkxjzvrqa2l"; depends=[]; }; + NAM = derive2 { name="NAM"; version="1.5.0"; sha256="01p0xncaly7pxc9fpiqh77z0pq6cbbskj40r7rhhbiad5pdihb0r"; depends=[randomForest Rcpp]; }; NAPPA = derive2 { name="NAPPA"; version="2.0.1"; sha256="0nn4wgl8bs7sy7v56xfif7i9az6kdz9xw7m98z1gnvl2g7damvn3"; depends=[NanoStringNorm plyr]; }; NB = derive2 { name="NB"; version="0.9"; sha256="1gh42z7lp6g09fsfmikxqzyvqp2874cx3a6vr96w43jfwmgi2diq"; depends=[]; }; NBDdirichlet = derive2 { name="NBDdirichlet"; version="1.3"; sha256="1657mqwn5i1b0g0gva387zl02vpymn98f71b0p7i7xv033mqnpqw"; depends=[]; }; NBPSeq = derive2 { name="NBPSeq"; version="0.3.0"; sha256="0l4ylxhs2k9ww21jjqs67fygk92avdchhx2y1ixzl7yr2yh1y9by"; depends=[qvalue]; }; - NCA = derive2 { name="NCA"; version="1.1"; sha256="11sx5y9i0y0c8r9z6lwjk4p9l4gmwj58i76z809l40mlld59igcz"; depends=[Benchmarking gplots quantreg sfa]; }; - NCmisc = derive2 { name="NCmisc"; version="1.1.4"; sha256="0hbrad72lzp0vi0j9lvpmvdih7vijqghqng1f0hjd8fg8hjvcflg"; depends=[dplyr proftools]; }; + NCA = derive2 { name="NCA"; version="2.0"; sha256="08951mmmpziljclwzmbni1s5a62wr9s80iyfsr07gkdz4sx3cvqf"; depends=[gplots KernSmooth quantreg sfa]; }; + NCmisc = derive2 { name="NCmisc"; version="1.1.5"; sha256="1dq38ac97l8b6ys3yxqnndbrp8fa8zfw0lr4nq2421sn91769w22"; depends=[proftools]; }; + NEArender = derive2 { name="NEArender"; version="1.4"; sha256="1zdqil28j6jc6317dkpz5i1qj7b4i3lin4800n1kf14zg9nxjdyg"; depends=[MASS RColorBrewer ROCR]; }; NEff = derive2 { name="NEff"; version="1.1"; sha256="16ys1fi28kbzg3am9vz1c5pc9x0ac47pl6za04h63lspk99yplzk"; depends=[bit msm]; }; - NEpiC = derive2 { name="NEpiC"; version="1.0"; sha256="1pz6n8frf8ggivrsb6z5x7aq3k13l4ksdbkzk5ndm09whdn5fzn5"; depends=[igraph]; }; + NEpiC = derive2 { name="NEpiC"; version="1.0.1"; sha256="11zf112xcsg3k93vks2fnsflw2v2d56a0bsjpd460d21k3gipfz8"; depends=[igraph PairedData]; }; + NFP = derive2 { name="NFP"; version="0.99.2"; sha256="1wnllzlww8257sbrgvfyvd21qvhf7j17mcpf6d4p6binaw8svnsb"; depends=[apcluster dplyr ggplot2 graph igraph KEGGgraph magrittr plyr stringr tidyr]; }; NHANES = derive2 { name="NHANES"; version="2.1.0"; sha256="0aphv3rakfcfrv2km1xyxpj1bxiazy6gwrvs7lyhxmq468fk4c9a"; depends=[]; }; NHEMOtree = derive2 { name="NHEMOtree"; version="1.0"; sha256="0ycprj2rz2fy6a7ps0bsr27iphmbfxi9pbvl8rcr6p8yagfb84mb"; depends=[emoa partykit rpart sets]; }; - NHMM = derive2 { name="NHMM"; version="3.5"; sha256="03il5y6vz5zyadydhk3qg6sd6fmsw7md9if1igyy9643mxxm1g0f"; depends=[BayesLogit MASS MCMCpack msm Rcpp]; }; - NHMSAR = derive2 { name="NHMSAR"; version="1.1"; sha256="1qbgxb684qwcb29x95a48r6bndqwdi1drwzimkhkb2ldm98yga3z"; depends=[caTools glasso lars SIS ucminf]; }; + NHMM = derive2 { name="NHMM"; version="3.7"; sha256="0h6m01y42yswjgx3cfj4xwj0wq9nw0gzjz7vf9prm3vag3wnfs2q"; depends=[BayesLogit MASS MCMCpack msm Rcpp]; }; + NHMSAR = derive2 { name="NHMSAR"; version="1.4"; sha256="12szfj9lssx2x3ng99q34f2knn4b7588dz8b307fhqj4r0f8iqh3"; depends=[caTools glasso lars ncvreg SIS ucminf]; }; NHPoisson = derive2 { name="NHPoisson"; version="3.1"; sha256="1gr682kxgw227yqw9w0iw9lrijsz5iszhnfk0mdhi6m1w9s28kcn"; depends=[car]; }; NIPTeR = derive2 { name="NIPTeR"; version="1.0.2"; sha256="0ll6amqyw33a93xiccihidrnbaqlx1q7kqcd4wks7cvqawd8pgv1"; depends=[Rsamtools S4Vectors sets]; }; NISTnls = derive2 { name="NISTnls"; version="0.9-13"; sha256="03a1c8a5dr5l5x4wbclnsh3vmx3dy7migfdzdx7d7p3s7hj3ibif"; depends=[]; }; - NISTunits = derive2 { name="NISTunits"; version="1.0.0"; sha256="156rk3wams52lw3inf55s9v7mi5x29mmb41p8kvryimnzgi904ca"; depends=[]; }; - NLP = derive2 { name="NLP"; version="0.1-9"; sha256="0rszp2iakbaj4z76jdi9z996xxgyyp0pqkxgnva0jcfi5sq3ngxr"; depends=[]; }; - NLPutils = derive2 { name="NLPutils"; version="0.0-3"; sha256="1j6y9z8d4ms6lxrz9wq9ydvsnkf4ca5qps8yxmglx81i152aq216"; depends=[NLP qdap SnowballC]; }; + NISTunits = derive2 { name="NISTunits"; version="1.0.1"; sha256="0km9l3k9p35sb1qrhrz4ijjsdihvsp6j7cz5kh46lgf7nn6xdk7a"; depends=[]; }; + NLP = derive2 { name="NLP"; version="0.1-10"; sha256="1jq9nhm2dzm0ppwlrxgbwk92dh1zwhcxjn13zaw8naiz8zffba63"; depends=[]; }; + NLPutils = derive2 { name="NLPutils"; version="0.0-4"; sha256="1dqbf8xmrzx81ybmp5qkd5a5rw3c19l2wxfnpddij4a1n074bwym"; depends=[NLP qdap SnowballC]; }; NLRoot = derive2 { name="NLRoot"; version="1.0"; sha256="1x8mcdgqqrhyykr12bv4hl4wbh1zw2qgpnd2yrm68kb92iy95rh4"; depends=[]; }; NMF = derive2 { name="NMF"; version="0.20.6"; sha256="0mmh9bz0zjwd8h9jplz4rq3g94npaqj8s4px51vcv47csssd9k6z"; depends=[cluster colorspace digest doParallel foreach ggplot2 gridBase pkgmaker RColorBrewer registry reshape2 rngtools stringr]; }; NMFN = derive2 { name="NMFN"; version="2.0"; sha256="0n5fxqwyvy4c1lr0glilcz1nmwqdc9krkqgqh3nlyv23djby9np5"; depends=[]; }; - NMOF = derive2 { name="NMOF"; version="0.36-2"; sha256="0s3zd6wj249b2ppznw84cv4rzsgfl5lzdrmps47hzq3iv83q3d33"; depends=[]; }; + NMI = derive2 { name="NMI"; version="2.0"; sha256="1rxphy9rhy9zhdiz48dvl9m26x6k681lnyn39lqxs0a6jhrxg7y3"; depends=[]; }; + NMOF = derive2 { name="NMOF"; version="0.40-0"; sha256="1zxbhpcl82v0wvp4dfpavwckvfyd2a9f4pbghk4mgqi0vhl8fgpz"; depends=[]; }; NNLM = derive2 { name="NNLM"; version="0.4.1"; sha256="1wi2rbj56v49hsnhwdyyjwfk4hb84sagfq6mpjis4ccq65hxkvfv"; depends=[Rcpp RcppArmadillo RcppProgress]; }; + NNS = derive2 { name="NNS"; version="0.2.6"; sha256="0lynyfj5njvk2smlp9l83fri6308kr6bblckz31wwk3bpy0mlh4c"; depends=[rgl]; }; NNTbiomarker = derive2 { name="NNTbiomarker"; version="0.29.11"; sha256="0sqlf7vzhpmq2g98c2qlrcqn3ba4ycfxbczgcjiqqhqsvgkpacc1"; depends=[magrittr mvbutils shiny stringr xtable]; }; + NORMA = derive2 { name="NORMA"; version="0.1"; sha256="193q6dwn8v7k8xq0amjpvb3v6mn7c6agqa487gvjj78dy1qz720a"; depends=[rootSolve]; }; NORMT3 = derive2 { name="NORMT3"; version="1.0-3"; sha256="041s0qwmksy3c7j45n4hhqhq3rv2hncm2fi5srjpwf9fcj5wxypg"; depends=[]; }; NORRRM = derive2 { name="NORRRM"; version="1.0.0"; sha256="06bdd5m46c8bbgmr1xkqfw72mm38pafxsvwi9p8y7znzyd0i6ag3"; depends=[ggplot2 SDMTools]; }; NORTARA = derive2 { name="NORTARA"; version="1.0.0"; sha256="1q4dmn5q939d920spmxxw08afacs3pzhr2gzwyqa5kn8xiz4ffg8"; depends=[corpcor Matrix]; }; NPBayesImpute = derive2 { name="NPBayesImpute"; version="0.6"; sha256="09cs6nj1pw4wv4w8bd1c4rilidzx12ymjzah9d0c412bwv0gmdyl"; depends=[Rcpp]; }; - NPC = derive2 { name="NPC"; version="1.0.2"; sha256="1rlxzvq09l2i0w5p5c37g1s3cccjvzpirn14v8dw89acvg3617q1"; depends=[coin dplyr matlab permute]; }; - NPCD = derive2 { name="NPCD"; version="1.0-9"; sha256="0d3fwbq7cnhwnndza4vl25jw6pahvy8zzicgy4pd6r6md7c9rbhm"; depends=[BB R_methodsS3 R_oo]; }; + NPC = derive2 { name="NPC"; version="1.1.0"; sha256="06y6vdln5zyinq9bsp66yz6i1v5bkw9pa2hknl9brwc75z359apn"; depends=[coin dplyr matlab permute]; }; + NPCD = derive2 { name="NPCD"; version="1.0-10"; sha256="1ag7j1r9j3piisg706hyhq8vaqfqvm1blxpkfxx7r1impjyqzyai"; depends=[BB R_methodsS3 R_oo]; }; NPCirc = derive2 { name="NPCirc"; version="2.0.1"; sha256="1pyckjvf4vzns9hxnhnk7cm4abllmdj3f142pvjhnilyqwndqgyc"; depends=[circular misc3d movMF plotrix rgl shape]; }; NPHMC = derive2 { name="NPHMC"; version="2.2"; sha256="000x9y00gfkaj5lf00a55b9qx15x05yp3g3nmp8slyzsnfv66p5d"; depends=[smcure survival]; }; NPMLEcmprsk = derive2 { name="NPMLEcmprsk"; version="2.1"; sha256="1v15ylgflbdr03pgh55fan1l6mymd1d5n6h9jhbcqahjlcsxkwq3"; depends=[]; }; NPMPM = derive2 { name="NPMPM"; version="1.0"; sha256="14rjj48vfj4wv1na5v181jby016afx4ak1fs0f3g1fif4kbgbdx0"; depends=[]; }; NPMVCP = derive2 { name="NPMVCP"; version="1.1"; sha256="13jpm46abwziq8859jhl6hg1znk3ws1q7g4vlr2jyri3qa6h22dd"; depends=[]; }; NPS = derive2 { name="NPS"; version="1.1"; sha256="02idja149a2sj97sks4lhsaflpifyxi6n0rjlcq9993f84szfgsi"; depends=[]; }; + NPflow = derive2 { name="NPflow"; version="0.10.1"; sha256="0lq3xchw932qjfk0akvxqpy50jnn4gwmyghvb8iabc7scl6px97n"; depends=[ellipse fastcluster ggplot2 gplots pheatmap Rcpp RcppArmadillo reshape2 truncnorm]; }; NPsimex = derive2 { name="NPsimex"; version="0.2-1"; sha256="1k9i1f5ckvzdns8f5qnm2zq7qs3wsgzsnfwdz21zmhmi6d0pwchm"; depends=[]; }; NSA = derive2 { name="NSA"; version="0.0.32"; sha256="0lnimyx3fpnw9zfhqm7y3ssvbpmvbmhcqy6fp83862imiwpl8i5r"; depends=[aroma_affymetrix aroma_core DNAcopy MASS matrixStats R_methodsS3 R_oo R_utils]; }; - NSM3 = derive2 { name="NSM3"; version="1.3"; sha256="0vmv7r499ig2fq2gwx78jdrflk5i55jy3vgjh87ygwlyhwj9cm8p"; depends=[agricolae ash binom BSDA coin combinat epitools fANCOVA gtools Hmisc km_ci MASS metafor nortest np partitions quantreg Rfit SemiPar SuppDists survival waveslim]; }; + NSM3 = derive2 { name="NSM3"; version="1.9"; sha256="0ianzczznigkbialzdm43w9wkgnsx24393v7hnxcvxqczzhl795h"; depends=[agricolae ash binom BSDA coin combinat epitools fANCOVA gtools Hmisc km_ci MASS metafor nortest np partitions quantreg Rfit SemiPar SuppDists survival waveslim]; }; NSUM = derive2 { name="NSUM"; version="1.0"; sha256="1as4g3v7qlk9wxlpwhg293980jq9gy6qay77bbcrjf481gvkkbp6"; depends=[MASS MCMCpack]; }; - NScluster = derive2 { name="NScluster"; version="1.0.2"; sha256="1bvr44qx3bzbgsdpj70dfq9azkrsywkbvwvm3lwwgpn0spk8apld"; depends=[]; }; + NScluster = derive2 { name="NScluster"; version="1.1.1"; sha256="1w63abh4q0wgv3x7inl2xyp9qgr9m223r2p7nfiqnxk9y259kh04"; depends=[]; }; + NUCOMBog = derive2 { name="NUCOMBog"; version="1.0.2.1"; sha256="0vv2ksmwg7hn6h4p5k32kisnxcpqhc8adlw0559jlmqfq9gqaa3k"; depends=[snowfall]; }; NanoStringNorm = derive2 { name="NanoStringNorm"; version="1.1.21"; sha256="1rbmhk5kags3mm4znakfp1c7axdpv4gmh2h0sydvyc2dm1vds5k4"; depends=[gdata vsn]; }; NbClust = derive2 { name="NbClust"; version="3.0"; sha256="1vwb48zy6ln1ddpqmfngii1i80n8qmqyxnzdp6gbaq96lakl3w3c"; depends=[]; }; NeatMap = derive2 { name="NeatMap"; version="0.3.6.2"; sha256="186y06zrh87q6vixl2da2d6apvcj1zkk79c95k081zj5awmryr9b"; depends=[ggplot2 rgl]; }; + NegBinBetaBinreg = derive2 { name="NegBinBetaBinreg"; version="1.0"; sha256="0ryi9gdf4sis77c0qxm6r86mfkk1nq9djs297y64nr6ng3rv9p9d"; depends=[boot Matrix mvtnorm]; }; + NestedCategBayesImpute = derive2 { name="NestedCategBayesImpute"; version="1.0.0"; sha256="1az32kqr5bl0mn9d69v21m80w4w3xm3pydwmr2awlfmdq674410i"; depends=[coda dplyr Rcpp]; }; NestedCohort = derive2 { name="NestedCohort"; version="1.1-3"; sha256="10hsc6zik8sz2mp6ig3xr6z3bq0c6rlvqkn11pxny17a4n02wapp"; depends=[MASS survival]; }; NetCluster = derive2 { name="NetCluster"; version="0.2"; sha256="0aby8kfniw07jap795cwk69z83p45q5rap73zp1qbmkm3qcb31g4"; depends=[sna]; }; NetComp = derive2 { name="NetComp"; version="1.6"; sha256="11rxpdihn575diqfvc7yvxhlr2c19fig4v4a5c6jhqyfdsd60fsv"; depends=[gdata]; }; NetData = derive2 { name="NetData"; version="0.3"; sha256="1jf05zwy0c6gmm7kvxlwvai61bz4wpsw7cl0h4i21ipzn1rqxmqj"; depends=[]; }; NetIndices = derive2 { name="NetIndices"; version="1.4.4"; sha256="0ydivbri8l8zkxi18ghj9h66915scyhca8i9mcyq4b06mjfigss8"; depends=[MASS]; }; + NetOrigin = derive2 { name="NetOrigin"; version="1.0-2"; sha256="1ldlx4nmc5k756fmbm9vxn9rwzxmad84zpi6318pjr52izms6q2k"; depends=[colorspace Hmisc igraph]; }; NetPreProc = derive2 { name="NetPreProc"; version="1.1"; sha256="0r51dqymf2nqm86py4zwdlf7qf120j0bg9r6a9c0gsyyijh4z40p"; depends=[graph]; }; + NetRep = derive2 { name="NetRep"; version="1.0.4"; sha256="1a58wxmjhd2jm5n6bl5l2706fbvfvjksfaal65fy04ssw14nziw8"; depends=[abind BH foreach RColorBrewer Rcpp RcppArmadillo ref RhpcBLASctl statmod]; }; NetSim = derive2 { name="NetSim"; version="0.9"; sha256="07h4qwz64k8zj8c2mx23cbnhg4rqrb4nfh20xw98kspz7cisdg6d"; depends=[Rcpp]; }; NetSwan = derive2 { name="NetSwan"; version="0.1"; sha256="1mwdy3ahagiifj2bd1ajrafvnxzi74a1x1d3i2laf1hqpz3fbgld"; depends=[igraph]; }; - NeuralNetTools = derive2 { name="NeuralNetTools"; version="1.4.0"; sha256="1lz8jdn8qrfhdp6sgfzy0bk7csz1v3sjwgbni235x2dz9p60p6n4"; depends=[ggplot2 nnet reshape2 scales tidyr]; }; - Newdistns = derive2 { name="Newdistns"; version="2.0"; sha256="1jgv9jl6pvsjgjsbjvmjg8qwjx4gsmp4kd27pbqxldp0qp0q9mjf"; depends=[AdequacyModel]; }; + NetWeaver = derive2 { name="NetWeaver"; version="0.0.2"; sha256="0wsmz7db8q2fycz6rfbbfs67ccj857y9zs4d80k1gnqazgj5whkn"; depends=[]; }; + NetworkComparisonTest = derive2 { name="NetworkComparisonTest"; version="2.0.1"; sha256="09fqlnpdibf9jr5mw2pzmwi66f6cjz8rmm8jay0cv2bami7jhy2a"; depends=[IsingFit IsingSampler qgraph reshape2]; }; + NetworkRiskMeasures = derive2 { name="NetworkRiskMeasures"; version="0.1.1"; sha256="0lgkj7r2rsf91ig5f1w85vpzy8aa43pk8vjif15ci3any82yz4is"; depends=[dplyr expm ggplot2 Matrix]; }; + NeuralNetTools = derive2 { name="NeuralNetTools"; version="1.5.0"; sha256="04r0716vlv54cjybxspq61ahb12f2i8krhils5layr436k7slm07"; depends=[ggplot2 nnet reshape2 scales tidyr]; }; + Newdistns = derive2 { name="Newdistns"; version="2.1"; sha256="1b5njkzj8b0wrvvfv904di0933k9d320gadmfm5zl6pzdp34bh1i"; depends=[AdequacyModel]; }; NightDay = derive2 { name="NightDay"; version="1.0.1"; sha256="0vkpr2jwhgghiiiaiglaj1b9pz25fcsl628c9nsp9zyl67982wz1"; depends=[maps]; }; - Nippon = derive2 { name="Nippon"; version="0.6.3"; sha256="1r13n65nzz3fm46q3ddy9gn5vbdym2x1h8cr12ajp40qrmjf41zv"; depends=[maptools sp]; }; + Nippon = derive2 { name="Nippon"; version="0.6.3-1"; sha256="0l7h2fxg87cgkb18b998fb954nfqsgchyikdfz1ysc7kjzpwdacp"; depends=[maptools sp]; }; NlcOptim = derive2 { name="NlcOptim"; version="0.4"; sha256="0842qqn2wdhxzcj5l4ywxrm8qcavrgvkll6ns2d2lbniiczijpnw"; depends=[MASS]; }; - NlsyLinks = derive2 { name="NlsyLinks"; version="2.0.1"; sha256="08w0wkmj9s3sgrwq0icfmp7a1i29hq4594hjmlxqagc843p592r4"; depends=[lavaan]; }; + NlsyLinks = derive2 { name="NlsyLinks"; version="2.0.6"; sha256="1kdqifwjkkk4x1ixg3ca6lbqx79ab907nnzwxca5iw721mbk5njg"; depends=[lavaan]; }; + NoiseFiltersR = derive2 { name="NoiseFiltersR"; version="0.1.0"; sha256="0y90si8f5hsi273g10hw700r72la30hwqlwg59gaq76wqlkm8j0p"; depends=[caret e1071 kknn MASS nnet randomForest rJava rpart RWeka]; }; NominalLogisticBiplot = derive2 { name="NominalLogisticBiplot"; version="0.2"; sha256="0m9442d9i78x57gdwyl3ckwp1m6j27cam774zkb358dw5nmwxbmz"; depends=[gmodels MASS mirt]; }; + NonCompart = derive2 { name="NonCompart"; version="0.2.6"; sha256="1zvpgdir2wzbg20l4v2fdpf1f3kw78pzx7kg1m8v83738f9jhc3a"; depends=[]; }; NonpModelCheck = derive2 { name="NonpModelCheck"; version="2.0"; sha256="0i87v666i0fc1c4rwxl6zmal7dp4ph7l7ki5vck9wykm28qr6q5y"; depends=[dr]; }; - NormPsy = derive2 { name="NormPsy"; version="1.0.3"; sha256="0lp6b7hh36ipmsv395xk671f7sczlfz5f9x0h88b2q6zvgbk081v"; depends=[lcmm]; }; + NormPsy = derive2 { name="NormPsy"; version="1.0.4"; sha256="07xx3n9g8ka9k6zqkx1963nqbqi6qlnkxy0fary7l1arv7vjly4s"; depends=[lcmm]; }; NormalGamma = derive2 { name="NormalGamma"; version="1.1"; sha256="0r3hhfscif0sx9v8f450yf119gpvf3ilpb8n3ziy4v4qf2jlcfnk"; depends=[histogram optimx]; }; NormalLaplace = derive2 { name="NormalLaplace"; version="0.2-0"; sha256="11z568zhb7jw9ghp6wlyf26ijm25crc5pqhzw71qgvva42nsmmwn"; depends=[DistributionUtils GeneralizedHyperbolic]; }; NostalgiR = derive2 { name="NostalgiR"; version="1.0.2"; sha256="0rpvwi815sdhaxqpji1y6g0vy8mkn5k6wci0a4jf54pkywwkwrwp"; depends=[txtplot]; }; Nozzle_R1 = derive2 { name="Nozzle.R1"; version="1.1-1"; sha256="05sjip4sz12mwd3jcbvk342p83kdmrd4l2jrh17p18w4l7w4nn0z"; depends=[]; }; - OAIHarvester = derive2 { name="OAIHarvester"; version="0.2-0"; sha256="1zpnf56kji14lrz6jm7saiw55yg7n62dk3r5qb21wx9qwzjggycp"; depends=[curl XML]; }; + OAIHarvester = derive2 { name="OAIHarvester"; version="0.2-2"; sha256="0r3yz8x123f0p9d165074ylnmf3hkyyc4h1758018m9iqj5cqp2h"; depends=[curl XML]; }; OBsMD = derive2 { name="OBsMD"; version="0.1-0.4"; sha256="00hakq94lkkx9iscxm3sv4hslyqsnjcxs74l6v89bm8p5ds8dlzl"; depends=[]; }; + OCA = derive2 { name="OCA"; version="0.1"; sha256="0kaf46gic8gp8f98y68kqvgm1baicwgvarfiwry1j0bd2rjad64d"; depends=[]; }; ODB = derive2 { name="ODB"; version="1.1.1"; sha256="1hha4rkbc2zh3karkqa0vn4v0nmcd7sljcymy1nh28bx1gx2ffgs"; depends=[DBI RJDBC]; }; - ODMconverter = derive2 { name="ODMconverter"; version="2.1"; sha256="03m15vck01s6jqcpm5fl7mipki4grgywlb9mksr0l8wygmn8zkxs"; depends=[xlsx XML]; }; - OData = derive2 { name="OData"; version="0.3"; sha256="0wd9z8k27vxblh1v95p3bx15i15yacqqfpwr15bnd0xnaw9sr0z7"; depends=[RJSONIO XML]; }; + ODMconverter = derive2 { name="ODMconverter"; version="2.3"; sha256="07j9p2hfx3almd5n3j0clc1alj5wzrnzljd9w13bbd6nrvil1krm"; depends=[xlsx XML]; }; + OData = derive2 { name="OData"; version="0.6"; sha256="10r4kfhdabramjmkgc4fl0bljaiqbvc7rq4byas7q8cmji2czw6f"; depends=[RJSONIO XML]; }; OECD = derive2 { name="OECD"; version="0.2.2"; sha256="07flhhca7734fffcqvxjl1hlhbbhn6lch868rlpps0r99jxy8m5q"; depends=[httr rsdmx xml2]; }; OIdata = derive2 { name="OIdata"; version="1.0"; sha256="078khxrszwnrww2h0ag153bf59fnyhirxy4m56ssgr2gmfahaymf"; depends=[maps RCurl]; }; OIsurv = derive2 { name="OIsurv"; version="0.2"; sha256="148mpjj5navc1vrl72y87krn4lf3awnd32z3g4qqaia404w5w7p7"; depends=[KMsurv survival]; }; OLScurve = derive2 { name="OLScurve"; version="0.2.0"; sha256="1zqapfwgwy9rxnbhmlgplkphw1bdia4cyi9q6iwcppw3rjw75f1n"; depends=[lattice]; }; ONETr = derive2 { name="ONETr"; version="1.0.3"; sha256="14l56qcmyyk2ivcfkfv7j2k4i1mfrngpi9zcc88w6xfhz5qlb548"; depends=[plyr RCurl XML]; }; + OOR = derive2 { name="OOR"; version="0.1.1"; sha256="09c7c2inpnag3kckrg9lfzxd3giqkj9xm91ibjkgpfv68nf733qc"; depends=[]; }; OOmisc = derive2 { name="OOmisc"; version="1.2"; sha256="09vaxn5czsgn6wpr27lka40kzd76jzqgqxavf26ms3m9kkdf83g4"; depends=[]; }; OPDOE = derive2 { name="OPDOE"; version="1.0-9"; sha256="0pf8rv5wydc8pl4x57g7bk2swjabaxdgijgsigjy5wihfcb48654"; depends=[crossdes gmp mvtnorm nlme orthopolynom polynom]; }; - OPI = derive2 { name="OPI"; version="2.3"; sha256="04g54iv43psfc8j5bz0rpks9mppx5fff683cxh36bsmbsl6rd1m9"; depends=[]; }; + OPI = derive2 { name="OPI"; version="2.5"; sha256="1rdm0zn62i2m9hbnhy1jbj2l0n3a8qckf8iv5hpfkj7xq6zzams7"; depends=[]; }; ORCI = derive2 { name="ORCI"; version="1.1"; sha256="0xy5lvz2scz06fphjyhqbdhp4bizmv87a8xykp9dbgx8b4ssnqgz"; depends=[BiasedUrn BlakerCI PropCIs]; }; ORCME = derive2 { name="ORCME"; version="2.0.2"; sha256="1pm8ajj24qqj2fir0gjzq5f4mfpl1cnj6fm2z5qg6g3sbnm57ayk"; depends=[Iso]; }; ORDER2PARENT = derive2 { name="ORDER2PARENT"; version="1.0"; sha256="04c80vk6z227w6qsnfls89ig4vqyiiymdarhq1pxa0gpr8j2ssx5"; depends=[Matrix]; }; ORIClust = derive2 { name="ORIClust"; version="1.0-1"; sha256="1biddddyls2zsg71w4innxl0ckfb80q2j9pmd56wvbc0qnbm0w3q"; depends=[]; }; ORMDR = derive2 { name="ORMDR"; version="1.3-2"; sha256="0y7b2aja3zvsd6lm7jal9pabcfxv16r2wh0kyzjkdfanvvgk3wmm"; depends=[]; }; + OSMscale = derive2 { name="OSMscale"; version="0.4.1"; sha256="175m15mas5kpqq93czlgiimkxvl4mg40dw04il1jnk4gypj4ifjq"; depends=[berryFunctions OpenStreetMap sp]; }; OTE = derive2 { name="OTE"; version="1.0"; sha256="18w483syhs523yfib9sibzmj16bypqxk4sc4771kfr1958h3igai"; depends=[randomForest]; }; OTRselect = derive2 { name="OTRselect"; version="1.0"; sha256="1bh14228yz552ngywjf1qyh1isqj4cgiy7n7d4zg8dpqwxr04ykp"; depends=[lars survival]; }; OTUtable = derive2 { name="OTUtable"; version="1.0.0"; sha256="0wdzi1ii5hwvr2fby26ydc4jhwl0gyi24jnl4yib6621hnjgv10y"; depends=[]; }; - OUwie = derive2 { name="OUwie"; version="1.49"; sha256="1hmbyqr0b9n6ng87adij59jyjkzwf8lw6lfxjqqzpz9mh9k1fkvy"; depends=[ape corHMM corpcor expm lattice nloptr numDeriv phangorn phytools Rmpfr]; }; + OUwie = derive2 { name="OUwie"; version="1.50"; sha256="1gzgwax9kmcr6rl6nv10xn536nbkjhmg6sqax58xxinc00ykdx75"; depends=[ape corHMM corpcor expm lattice nloptr numDeriv paleotree phangorn phytools Rmpfr]; }; Oarray = derive2 { name="Oarray"; version="1.4-5"; sha256="1w66vqxvqyrp2h6acnbg3xy7cp6j2dgvzmqqk564kvivbn40vyy4"; depends=[]; }; - OasisR = derive2 { name="OasisR"; version="1.0.0"; sha256="0anw1ncbjjmlnhigcfwm9zqmp4ah5cfbmmm3588k95xxp6xq9vmv"; depends=[rgdal rgeos spdep]; }; - OceanView = derive2 { name="OceanView"; version="1.0.4"; sha256="072gjbka7ncp5sa463kbi06fjx7nm1ljgzpx4b7ybq9pcwvnyzz6"; depends=[plot3D rgl shape]; }; + OasisR = derive2 { name="OasisR"; version="2.0.1"; sha256="0knkq33yf0b5flbkmc5ng4ys4x840rzkfrr26jcp7ri3bqg87lqv"; depends=[birk rgdal rgeos spdep]; }; + OceanView = derive2 { name="OceanView"; version="1.0.4"; sha256="072gjbka7ncp5sa463kbi06fjx7nm1ljgzpx4b7ybq9pcwvnyzz6"; depends=[plot3D plot3Drgl rgl shape]; }; Ohmage = derive2 { name="Ohmage"; version="2.11-4"; sha256="14pga59ikiywyl6xnfd2d8sy323vyn88q9sf101bcwp0s0qczwzg"; depends=[RCurl RJSONIO]; }; - OjaNP = derive2 { name="OjaNP"; version="0.9-8"; sha256="010l75irgj7nl8yq6crp8d00zjgpv9wg2maw99cj0frhqxvqzbfz"; depends=[ICS ICSNP]; }; + OjaNP = derive2 { name="OjaNP"; version="0.9-9"; sha256="12a7zfrk3rdvfby5qa511w3nk5jpnsd5gg2z46b5s97rxb3qq7za"; depends=[ICS ICSNP Rcpp]; }; OligoSpecificitySystem = derive2 { name="OligoSpecificitySystem"; version="1.3"; sha256="17mspf1ph2ybv046zckykfdcbrsiz40hrs6ib5mpwkfnrvsp1w7l"; depends=[tkrplot]; }; OmicKriging = derive2 { name="OmicKriging"; version="1.4.0"; sha256="08frr38yf5d0l3zwkbq9465xrbyzsn8sx9icqc3yvfnxrkhrpzig"; depends=[doParallel foreach irlba ROCR]; }; Oncotree = derive2 { name="Oncotree"; version="0.3.3"; sha256="147rc9ci66lxbb91ys2ig40sgmldi15p604yysrd4ccbxpbk2zwf"; depends=[boot]; }; - OneArmPhaseTwoStudy = derive2 { name="OneArmPhaseTwoStudy"; version="0.1.4"; sha256="1g3yrrnrk4375wxzfdndsm963ma112k5njv18adh43vfzyzg5l2m"; depends=[Rcpp]; }; + OneArmPhaseTwoStudy = derive2 { name="OneArmPhaseTwoStudy"; version="0.1.6"; sha256="0whd5vwaqhvv5qmryzh7nh5skc4lv740ziha7vxfpb91ph0mgrz8"; depends=[Rcpp]; }; + OneR = derive2 { name="OneR"; version="2.1"; sha256="1f9gr9bdwnlxlr0mv10f05pk9fznlgkdy0j5gcyfc1643826chfr"; depends=[]; }; OneTwoSamples = derive2 { name="OneTwoSamples"; version="1.0-3"; sha256="0019rc2f4jmbm6sinkvalvjqwi822x78aiin88kg8qbbb5ml8l89"; depends=[]; }; OpasnetUtils = derive2 { name="OpasnetUtils"; version="1.2.0"; sha256="1ckagq14w9923a4x7pk9mfzqcfayi00apwd2kvqzgd0s6355r1q7"; depends=[digest ggplot2 httpRequest plyr RCurl reshape2 rgdal rjson sp triangle xtable]; }; OpenCL = derive2 { name="OpenCL"; version="0.1-3"; sha256="0f7vis0jcp0nh808xbzc73vj7kdcjb0qqzzsh3gvgamzbjfslch8"; depends=[]; }; + OpenImageR = derive2 { name="OpenImageR"; version="1.0.4"; sha256="1bzfbfckc7yaflsd74c5zs2ig4rkd3q9fzxxrw4kc0vgijalyf3p"; depends=[jpeg png Rcpp RcppArmadillo shiny tiff]; }; + OpenML = derive2 { name="OpenML"; version="1.2"; sha256="16zvxr45jcw4z30jmg9l6xdlkq76wbi89xj8c328qkwlghik17sy"; depends=[backports BBmisc checkmate curl data_table digest httr jsonlite memoise mlr ParamHelpers stringi XML]; }; OpenMPController = derive2 { name="OpenMPController"; version="0.1-2"; sha256="1cpsbjmqql0fsjc1xv323pfkhfr9vrcv5g4j3p1qc5zn4z9pq7r6"; depends=[]; }; - OpenMx = derive2 { name="OpenMx"; version="2.5.2"; sha256="1ymh4im1d0ad6zjz4crrljvnb2g7aqisb2xqrxlsqljlbjbizmfv"; depends=[BH digest MASS Matrix Rcpp RcppEigen rpf StanHeaders]; }; + OpenMx = derive2 { name="OpenMx"; version="2.7.4"; sha256="18zgypwjd37fcmsc3gzsa3ww6b7l9y9sm7jgj5x79hzqn0mfknfv"; depends=[BH digest MASS Matrix Rcpp RcppEigen rpf StanHeaders]; }; OpenRepGrid = derive2 { name="OpenRepGrid"; version="0.1.9"; sha256="1s40c2yfd4a4khs0ghlbzii94x8cidg851bivanplg2s51j5jrhk"; depends=[abind colorspace GPArotation plyr psych pvclust rgl stringr XML]; }; - OpenStreetMap = derive2 { name="OpenStreetMap"; version="0.3.2"; sha256="1cszyp4bvlypri9smd238r2bd05dwpcrsi6bs8yl5g2glfnv1zjn"; depends=[ggplot2 raster rgdal rJava sp]; }; + OpenStreetMap = derive2 { name="OpenStreetMap"; version="0.3.3"; sha256="099vdyq0vw9xl5v7zggdb8yd4zl7x8imvvbj5j2f5hrspgg131pz"; depends=[ggplot2 raster rgdal rJava sp]; }; OptGS = derive2 { name="OptGS"; version="1.1.1"; sha256="1acwwjng5ri5vganv7b5pagp7524ifr0q8h1pbfb5g6z3x6w08kh"; depends=[]; }; OptHedging = derive2 { name="OptHedging"; version="1.0"; sha256="0g7qaf5abvbcqv2h1dciwn3gwpz084ryqjjk0yabdm4ym0y38ddm"; depends=[]; }; OptInterim = derive2 { name="OptInterim"; version="3.0.1"; sha256="1ks24yv5jjhlvscwjppad27iass59da1mls99hlif0li9mvkbvyk"; depends=[clinfun mvtnorm]; }; - OptiQuantR = derive2 { name="OptiQuantR"; version="0.0.1"; sha256="1wgvz4n0qla4i5c24j0yanl7xz4f56951q8zb1593rf5kba1gg1k"; depends=[data_table lubridate]; }; + OptimaRegion = derive2 { name="OptimaRegion"; version="0.2"; sha256="0xhl7jp2429007jzx305ggfwyx0vh2vxw7l2a7f3c0prklhyqpqc"; depends=[boot DepthProc fields nloptr rsm spam]; }; OptimalCutpoints = derive2 { name="OptimalCutpoints"; version="1.1-3"; sha256="1vrbx62080r9sgk9ipjvdrqvikp4gwidp5gi5j92hspk7cp10amg"; depends=[]; }; + OptimalDesign = derive2 { name="OptimalDesign"; version="0.2"; sha256="1gpcasdbcgqqr1l6f63q4jqva28rpz0cbgs1f4l3bizldd9kf4kh"; depends=[]; }; OptionPricing = derive2 { name="OptionPricing"; version="0.1"; sha256="0j98h3fn29xfv7xyp7av459v56chw99pnvmsbqvrv4g77p60f5q2"; depends=[]; }; OrdFacReg = derive2 { name="OrdFacReg"; version="1.0.6"; sha256="16mavsmp6d8rfmimmp5ynwyzir0gycpg8rhd8cwanlrndyclqlpv"; depends=[eha MASS survival]; }; OrdLogReg = derive2 { name="OrdLogReg"; version="1.1"; sha256="18s75pmz1g3yac2rfl41kj8sfflq298qkijnvqlybgxpq98ickxx"; depends=[LogicReg]; }; OrdMonReg = derive2 { name="OrdMonReg"; version="1.0.3"; sha256="1xca8pvvq79j484l2rmn4nva8ncx8z51g5diljikck231y8qjqaz"; depends=[]; }; OrdNor = derive2 { name="OrdNor"; version="2.0"; sha256="1zr8zzigrbf6r0zz4f0za6my6d67wxqzvmabl36pjxc3sq7jh83j"; depends=[corpcor GenOrd Matrix mvtnorm]; }; OrdinalLogisticBiplot = derive2 { name="OrdinalLogisticBiplot"; version="0.4"; sha256="1axn03yrw30r2j9ss5ig9sq857y37vhrr4a7px68jc2az8mng41j"; depends=[MASS mirt NominalLogisticBiplot]; }; - OrgMassSpecR = derive2 { name="OrgMassSpecR"; version="0.4-4"; sha256="046lr0piiy5w5lxjvyw7iqqclkghmc6zqymfypkw374gk73yrm76"; depends=[]; }; + OrgMassSpecR = derive2 { name="OrgMassSpecR"; version="0.4-6"; sha256="1xihaq8vxc9s6b37bydavg3xxnzbn96l85b1bz2mq5m6snpp8ra0"; depends=[]; }; OriGen = derive2 { name="OriGen"; version="1.4.3"; sha256="0a7mql87dqxrfx7phgy32hbanfwnjx8x52mj83xf2mgmqhrcikr6"; depends=[ggplot2 maps]; }; - OrthoPanels = derive2 { name="OrthoPanels"; version="0.9-1"; sha256="1p8q0b9zm7dd84qh3mrz67lcd1r11z5rj0bp93nsl23q1m2998sc"; depends=[MASS]; }; + OrthoPanels = derive2 { name="OrthoPanels"; version="1.1-0"; sha256="1g78abh9i3x0g34vjqz2ic9330rbgn8k0hgdcrznxgsfnlgnpx9x"; depends=[MASS]; }; OutbreakTools = derive2 { name="OutbreakTools"; version="0.1-14"; sha256="03bdb7w5nsrjxz5kd5zvgwybgmv2mzsxyzdc7v3kpwi20yfb9ax8"; depends=[ape ggmap ggplot2 knitr network networkDynamic plyr RColorBrewer RCurl reshape2 rjson scales sna]; }; OutlierDC = derive2 { name="OutlierDC"; version="0.3-0"; sha256="1vm3zx4qmj9l0ddfqbksm1qyqzzqrxf93gh4kj52h68zlsfxwv41"; depends=[Formula quantreg survival]; }; OutlierDM = derive2 { name="OutlierDM"; version="1.1.1"; sha256="0n8iq464ryc3v4wms7cdka39870w5pg29z9v8gmdsp4d9cfsx9v4"; depends=[MatrixModels outliers pcaPP quantreg]; }; OutrankingTools = derive2 { name="OutrankingTools"; version="1.0"; sha256="0z7pslkkinn7flc4xwjg0bsfswf8ad4jv9rmglaj3fmjcx9b6wgj"; depends=[igraph]; }; - OxyBS = derive2 { name="OxyBS"; version="1.0"; sha256="1h8jxiya6lz9ib53dm5wmhqg2y20p41mk6dqjx6k8zgjglqk8p9w"; depends=[]; }; + OxyBS = derive2 { name="OxyBS"; version="1.5"; sha256="11l3gm0jvw993jb13f6kpv77m6z0d1jswscma2v28qzkw053r3dc"; depends=[]; }; P2C2M = derive2 { name="P2C2M"; version="0.7.6"; sha256="07ycl22v03b2xdaw4v0l6layqhab431ma38qywzm96hkl3ywvl49"; depends=[ape ggplot2 rPython stringr]; }; - PACVB = derive2 { name="PACVB"; version="1.1"; sha256="1qkh9a904xd46295jxqyj1ka993ibd0hbm026hjs2ji9pw894040"; depends=[BH MASS Rcpp RcppArmadillo]; }; - PAFit = derive2 { name="PAFit"; version="0.7.5"; sha256="1rczpgy1qrzc1p02nssx5gyi8m71w5jl97scqaddqyzg1c0zfvrp"; depends=[Rcpp]; }; + PAC = derive2 { name="PAC"; version="1.0.6"; sha256="04jbyxgw8cpbjajlnal66y1kfjnxd4v6gp32wg7cdp7cmz0yxbii"; depends=[dplyr igraph parmigene Rcpp]; }; + PACBO = derive2 { name="PACBO"; version="0.1.0"; sha256="1v3j5bgvf0wh8s4d2yyz0fkc3acdwjlicwnbh1r241b1742x79cb"; depends=[mnormt]; }; + PAFit = derive2 { name="PAFit"; version="0.9.6"; sha256="0jallwvzrjw4vv1gnszlhx6jv8g67wx41kgcil0yz8867wf1sxkb"; depends=[RColorBrewer Rcpp VGAM]; }; PAGI = derive2 { name="PAGI"; version="1.0"; sha256="01j1dz5ihqslpwp9yidmhw86l112l7rfkswmf03vss872mpvyp3f"; depends=[igraph]; }; PAGWAS = derive2 { name="PAGWAS"; version="2.0"; sha256="0bz47ivd32kx1amgqllqbxyyvj773q7wasgk924hmibabiixa8nx"; depends=[foreach lars mnormt]; }; PANDA = derive2 { name="PANDA"; version="0.9.9"; sha256="1sf3c49v4mb3mz2imqlqdbh1iab7bc2pxpi8bmgj2jld133555ip"; depends=[cluster GO_db]; }; - PANICr = derive2 { name="PANICr"; version="0.0.0.5"; sha256="049ga5iiymqczvy51y52yk7yvv9xy0ibr64ly8ciqig84d5f4jjr"; depends=[MCMCpack]; }; + PANICr = derive2 { name="PANICr"; version="1.0.0"; sha256="167s1p7y8mmhcdnng0s5i09kjfh088jhmxs74rkyda52l9hyx363"; depends=[coda MCMCpack xts]; }; + PARSE = derive2 { name="PARSE"; version="0.1.0"; sha256="0y408va1rfn3j8cb1i0k8kypyg9mb6yfj513l54f23z31d3bi45m"; depends=[doParallel foreach gplots mvtnorm]; }; PAS = derive2 { name="PAS"; version="1.2"; sha256="0q5g9j8xb9fl7r8f1w5gk5h83ll5w1r6m2gq9ilw8w8s96pm4xd8"; depends=[glmnet]; }; PASWR = derive2 { name="PASWR"; version="1.1"; sha256="1rxymnqvflypc6m62f5vw65l8x1m2yah7r11hhpmzdq2l2sg8fci"; depends=[e1071 lattice MASS]; }; PASWR2 = derive2 { name="PASWR2"; version="1.0.2"; sha256="04vwgmi56spjriwp2ls5zcgslfg1y4pvwa0m33f9izay0y6q2wfx"; depends=[e1071 ggplot2 lattice]; }; + PASenseWear = derive2 { name="PASenseWear"; version="1.0"; sha256="0x84j1vdds4g08birmjxb0c2g1ahwv83bk11532jkmg32dnhmj58"; depends=[ggplot2]; }; + PATHChange = derive2 { name="PATHChange"; version="1.0"; sha256="1pmxhaych01cywx9bb5z0p5lbxcma7x6nlprivpx3gnpg7m9srpg"; depends=[rlist stringr VennDiagram]; }; PAWL = derive2 { name="PAWL"; version="0.5"; sha256="1sx4g4qycba2j1fm0bvhz3hk6ghhdc37rz5zi1njqxrpmbnkqg04"; depends=[foreach ggplot2 mvtnorm reshape]; }; - PAactivPAL = derive2 { name="PAactivPAL"; version="1.0"; sha256="10whjaqfz50llv9ij4l4vadkxba038l31vpp27wgjli9kvl39a2k"; depends=[]; }; + PAactivPAL = derive2 { name="PAactivPAL"; version="2.0"; sha256="1mjfxq0a9fql8bg5c6l5w1knjqq29cb4l10ppxnym9gnsjrk0kw1"; depends=[]; }; PBD = derive2 { name="PBD"; version="1.2"; sha256="0pxm9pdmylg95v5pyppvyl64zx5vgypx5fksj18zvws6vpb60xab"; depends=[ade4 ape DDD deSolve phytools]; }; + PBIBD = derive2 { name="PBIBD"; version="1.2"; sha256="1dbrd6qwczwk41zmh9ck9cgzqpry9kycygyk0ls8kc92p45cz3dh"; depends=[]; }; PBImisc = derive2 { name="PBImisc"; version="1.0"; sha256="18gjp66q6l0w6vsgm6d5sjgpa906z1gyyp6yf58lq5vyg1bnfmcl"; depends=[lme4 Matrix]; }; + PBNPA = derive2 { name="PBNPA"; version="0.0.1"; sha256="1a43kk7di5bqifa68lhrxx3p9vvfn0rr5nifx60c2y7j7cp63fk8"; depends=[metaRNASeq]; }; PBSadmb = derive2 { name="PBSadmb"; version="0.68.104"; sha256="01akimdsp0bkvz3a5d75yyy3ph0mff85n8qsnr59fla5b5cm4qlj"; depends=[PBSmodelling]; }; - PBSddesolve = derive2 { name="PBSddesolve"; version="1.11.29"; sha256="13vprr66hh5d19xambpyw7k7fvqxb8mj5s9ba19ls7xgypw22cmm"; depends=[]; }; + PBSddesolve = derive2 { name="PBSddesolve"; version="1.12.2"; sha256="12pl95mcak88524s8zvk9dzib2g40fwaz6iz7igx9wg6vib9d1sj"; depends=[]; }; PBSmapping = derive2 { name="PBSmapping"; version="2.69.76"; sha256="1fci7mx5m3jqy92nqfaw5w5yd5rw6f0bk5kya1v0mmvf7j715kar"; depends=[]; }; PBSmodelling = derive2 { name="PBSmodelling"; version="2.67.266"; sha256="0ych9k20x0m71gkdrpwv5jnx6pfsk45wwsaaamy32cmnhd3y14sq"; depends=[XML]; }; PCA4TS = derive2 { name="PCA4TS"; version="0.1"; sha256="1qi9nlaf5181afrdvddh10a9vxyhry102n3dhai86im8yz4if9y6"; depends=[tseries]; }; PCAmixdata = derive2 { name="PCAmixdata"; version="2.2"; sha256="0gbmiy2mhz8lgp0pcjby4ny8a28wlx1xrsa2lknzxn4d0m2csxjn"; depends=[]; }; PCDSpline = derive2 { name="PCDSpline"; version="1.0"; sha256="15kmvcwvwlsr1107n7mfajvf9b1kcslnhsdx0drjjhsvq193qrqa"; depends=[matrixcalc nleqslv]; }; - PCGSE = derive2 { name="PCGSE"; version="0.2"; sha256="19bpnn1b8ihmf52zh9g9pc38130np1ki8l7wf0j5myw2cnw6fna8"; depends=[MASS RMTstat safe]; }; + PCGSE = derive2 { name="PCGSE"; version="0.3"; sha256="1fb4in6b8d5n0zjfys33y35n3srqpzrnyk2qhzvpjsjf7jmn9898"; depends=[MASS RMTstat safe]; }; PCICt = derive2 { name="PCICt"; version="0.5-4"; sha256="1g17hxs00dlnb6p0av6l7j99qy00555f80nk1i1i1x87fszp3axa"; depends=[]; }; PCIT = derive2 { name="PCIT"; version="1.5-3"; sha256="0gi28i2qd09pkaja4w7abcl7sz43jnk98897vc2905fnk9nks65j"; depends=[]; }; - PCPS = derive2 { name="PCPS"; version="1.0.2"; sha256="17gjj88zq123nxg4dh2w304sh9c1c4myad2g8x31wn1z7bmawv3y"; depends=[ape phylobase picante plotrix SYNCSA vegan]; }; + PCPS = derive2 { name="PCPS"; version="1.0.3"; sha256="1ys3xp1nripy5zkq25byak9k6yf5rdbfnww8j13yc469428ip8q0"; depends=[ape phylobase picante SYNCSA vegan]; }; PCS = derive2 { name="PCS"; version="1.2"; sha256="0488h6s1yz6fwiqf88z2vgckn6i0kwls8cazmpw3wspnaqvl2n4s"; depends=[multtest statmod]; }; + PCSinR = derive2 { name="PCSinR"; version="0.1.0"; sha256="1z8yjryw3c43vc6fxcwiindmyq6r63pc1zr3aybwmys6mv697bb4"; depends=[]; }; PCovR = derive2 { name="PCovR"; version="2.6"; sha256="0b1bbf6namll2afxh61qz4xz4ipzipdnfhbcqlragmyj9pisaf45"; depends=[GPArotation MASS Matrix ThreeWay]; }; - PDQutils = derive2 { name="PDQutils"; version="0.1.4"; sha256="1wag65qgfbwr506c9jnwbd4drkqapy41sswy9g1j94qm1iwgwcvz"; depends=[moments orthopolynom]; }; + PDM = derive2 { name="PDM"; version="0.1"; sha256="1pbdy13ji9c6krgh2r1qgrzmf4hdmrdzylsr71n3hh5jq4n9xg8x"; depends=[jpeg]; }; + PDQutils = derive2 { name="PDQutils"; version="0.1.5"; sha256="1k9zfdsxyn384ymq920y0p0fps6svlq08sp13ayg0mindsswmp3k"; depends=[moments orthopolynom]; }; PDSCE = derive2 { name="PDSCE"; version="1.2"; sha256="17lc6d8ly6jbvjijpzg45dvqrzrh5s1sp415nycazgpbg9ypwr2h"; depends=[]; }; + PEGroupTesting = derive2 { name="PEGroupTesting"; version="1.0"; sha256="1z863ard0cc2g8ibxnmxhiqhvs53r6b8gpnavnfchm9432ifcbwi"; depends=[]; }; PEIP = derive2 { name="PEIP"; version="2.0-1"; sha256="0zfvp3ngc4320sh6r6y746zxigr2wqgaqasnlkv3hxhzpzxq08lj"; depends=[bvls Matrix pracma RSEIS]; }; PEMM = derive2 { name="PEMM"; version="1.0"; sha256="18dd9hsbdrnhrrff7gpdqrw2jv44j8lg0v3lkcdpbd4pppcaq84h"; depends=[]; }; PET = derive2 { name="PET"; version="0.4.9"; sha256="1ijg6mfh3xrc1gjh6a4nq64psk9yh16yc8nfp7c9837xbjigqq7f"; depends=[adimpro]; }; - PGEE = derive2 { name="PGEE"; version="1.0"; sha256="10js28w629y145q9zcc42ydw03ll2dh7pfzdqx2mmli300w88mvr"; depends=[MASS mvtnorm]; }; + PGEE = derive2 { name="PGEE"; version="1.4"; sha256="1hzqx1a3zgg07dqw7yyykvlaxjqpr04ch48bmnl4byy6izfghy8m"; depends=[MASS mvtnorm]; }; PGICA = derive2 { name="PGICA"; version="1.0"; sha256="0qxa5hw2s3mndjvk8lb82pcbyj1kbdclx4j4xa8jq0lcj180abi9"; depends=[fastICA]; }; - PGM2 = derive2 { name="PGM2"; version="1.0"; sha256="18azh6k271p9dvc23q402pv7wrilr1yk02vqqy6qjppnvq6jxahg"; depends=[]; }; - PGRdup = derive2 { name="PGRdup"; version="0.2.2.1"; sha256="02xl20kiy0704pw3n72pk8bi1vxr30fz6n703p5j3f0f9n954sl6"; depends=[data_table ggplot2 gridExtra igraph stringdist stringi]; }; - PHENIX = derive2 { name="PHENIX"; version="1.2.2"; sha256="09x8x8izv4faal772zrz0n867wzp3s6gmmqpr7lln7ww07vlh4gx"; depends=[ppcor SuppDists]; }; + PGM2 = derive2 { name="PGM2"; version="1.0-1"; sha256="03282pcq7gw47awc2mxjsbz6w3zpqjhqd7fzg8la4p00cd0vvmr4"; depends=[]; }; + PGRdup = derive2 { name="PGRdup"; version="0.2.3"; sha256="10nm71kj746ap7qx1qr7y8xm3m732blkaac20lwif2zljl3cy2dl"; depends=[data_table ggplot2 gridExtra igraph stringdist stringi]; }; + PHENIX = derive2 { name="PHENIX"; version="1.3"; sha256="1b9sxy2slfzls2snif738sjw34k3hs2i55g1yb1kbx06702q47ak"; depends=[ppcor SuppDists]; }; PHYLOGR = derive2 { name="PHYLOGR"; version="1.0.8"; sha256="17lmjfbwf8j68zzzhdvppyjacdsmy4zmcfj0pcjsw5j6m361hvh6"; depends=[]; }; PHeval = derive2 { name="PHeval"; version="0.5.3"; sha256="1zq4ks6w5vrhy1f170fv16zgrgi1lfxmkpfkg75sjin7asw4i7a9"; depends=[survival]; }; PIGE = derive2 { name="PIGE"; version="0.9"; sha256="1x8ml25mm69dvlszm9p2ycph92nxcsgd52ydj7ha0dwrrpcv2law"; depends=[ARTP snowfall survival xtable]; }; @@ -1637,455 +2038,543 @@ in with self; { PIPS = derive2 { name="PIPS"; version="1.0.1"; sha256="1c5v3s6xys9p1q32k6mpsffhi9gwsq951rh12hs76dmak862yspc"; depends=[]; }; PK = derive2 { name="PK"; version="1.3-3"; sha256="07qxyszj0f7qwrg5ixvciy33mjsfxxi9rk32a1fz46z8wiwfil9i"; depends=[]; }; PKI = derive2 { name="PKI"; version="0.1-3"; sha256="1xhc84k4iszvfawwwzrwclfs41nvb8bmyygapxmsxjky725s7k1g"; depends=[base64enc]; }; - PKNCA = derive2 { name="PKNCA"; version="0.6"; sha256="0k04xb0akkk3d4m66v66wisxk38mn13avxk6zlm30fivwqh8vzw9"; depends=[digest doBy lattice nlme plyr]; }; + PKNCA = derive2 { name="PKNCA"; version="0.7.1"; sha256="170chkdh78xmcw2p1xm23x4q5kj0637i0nbrwz73cxg0yni4h3qa"; depends=[digest doBy lattice nlme plyr tidyr]; }; PKPDmodels = derive2 { name="PKPDmodels"; version="0.3.2"; sha256="1h893civ77ahbgjnc6kq3l7rszmqmx9dlxwavldigpq3r79vd86k"; depends=[]; }; PKgraph = derive2 { name="PKgraph"; version="1.7"; sha256="0g36cdv5cblqx69j48irxjc5nlw2cl3p714mlsblnd3362z1brwn"; depends=[cairoDevice ggplot2 gWidgetsRGtk2 lattice proto rggobi RGtk2]; }; PKreport = derive2 { name="PKreport"; version="1.5"; sha256="16hss9migbxpnw5f9gcw1nlvb81iyji00ylx5wd6kdwhz0ids9wj"; depends=[ggplot2 lattice]; }; PLIS = derive2 { name="PLIS"; version="1.1"; sha256="0b81s7677wglqvv1b5lx8k2iaks09kz0wrl07245a7j2pk9nxv7p"; depends=[]; }; + PLMIX = derive2 { name="PLMIX"; version="1.0"; sha256="1z59z7ynlfh7cskanj7drvry0fpzl5mq52as8adi2zxp2q8q032p"; depends=[abind combinat foreach FSA rcdd Rcpp]; }; PLRModels = derive2 { name="PLRModels"; version="1.1"; sha256="0dwnzfw7a1cxz9s00kxf19jmjsc8cy6cc9q2mjqf8z7690wrg7hb"; depends=[]; }; PLSbiplot1 = derive2 { name="PLSbiplot1"; version="0.1"; sha256="1l8d1k913ic0qwxvrrd447p5ni3mzc6v9lv45b7vqrpzkxdci6gy"; depends=[]; }; PLordprob = derive2 { name="PLordprob"; version="1.0"; sha256="156lvz6vfm68hm32l5nlhq15hfacdla627d6lf8l4g34lwzdh8k8"; depends=[mnormt]; }; PMA = derive2 { name="PMA"; version="1.0.9"; sha256="11qwgw4sgzl3xhrm468bsza83h3mfn89157nfwnrassl7qr42xkq"; depends=[impute plyr]; }; PMCMR = derive2 { name="PMCMR"; version="4.1"; sha256="0mfms8wvdwcakkgsnrb2wawp07hvlr7s6cvl54kxv7f5fqllw5kc"; depends=[]; }; + POET = derive2 { name="POET"; version="2.0"; sha256="0w3jhj45sxisyrpcsazbrbcsz7rmraw71jjm0zixbcgc4klb98ar"; depends=[]; }; + POT = derive2 { name="POT"; version="1.1-6"; sha256="08av53rnishk3mhwrb6ydbgc3n9nwi87jlx5vmag3vpiidhn1laj"; depends=[]; }; PP = derive2 { name="PP"; version="0.5.3"; sha256="17y1v2536n7ap0kvllwkmndmdjf4wgwl171c053ph45krv37mscf"; depends=[Rcpp]; }; PPtree = derive2 { name="PPtree"; version="2.3.0"; sha256="002qjdx52r2h90wzrf2r3kz8fv3nwx08qbp909whn6r4pbdl532v"; depends=[MASS penalizedLDA]; }; - PPtreeViz = derive2 { name="PPtreeViz"; version="1.3.0"; sha256="1v5538mwmdfgwyqi6a72b4hkhwl0b8xz3ai81cv4q8cbvgwgq8fj"; depends=[ggplot2 gridExtra Rcpp RcppArmadillo]; }; + PPtreeViz = derive2 { name="PPtreeViz"; version="2.0.1"; sha256="02073yxdwns9mnnjvw13ydw1s3vrxl53szcd9jy8ibj78vnm57r3"; depends=[ggplot2 gridExtra partykit Rcpp RcppArmadillo]; }; PRIMsrc = derive2 { name="PRIMsrc"; version="0.6.3"; sha256="18vk968dz9508bnnyhq2wz7py72ld42c0ah22a7d8n3nwx26ldbd"; depends=[glmnet Hmisc MASS survival]; }; PRISMA = derive2 { name="PRISMA"; version="0.2-5"; sha256="06z4z1rbsk5a8kpbs6ymm0m02i8dwbmv783c3l2pn4q3pf6ncmd5"; depends=[ggplot2 gplots Matrix]; }; + PRISMAstatement = derive2 { name="PRISMAstatement"; version="1.0.1"; sha256="1qk9cljk52m8rcasck8cl7gwzhcsx0p58jn31izy2j027w0rns7j"; depends=[DiagrammeR]; }; PROFANCY = derive2 { name="PROFANCY"; version="1.0"; sha256="11a0fpsv1hy0djv36x2i2hv2j50ryy0x7g7nn7vv76m1sl6q6r4b"; depends=[igraph lattice Matrix]; }; PROTOLIDAR = derive2 { name="PROTOLIDAR"; version="0.1"; sha256="0bz3071b0wlcvh40vl3dyiiixk5avsj6kjjnvlvx264i5g08rij4"; depends=[]; }; PRROC = derive2 { name="PRROC"; version="1.1"; sha256="1v35z9inzb6x42fil8z7kfcrnfif93cj8974mfbqhhx0f9vi476a"; depends=[]; }; - PReMiuM = derive2 { name="PReMiuM"; version="3.1.3"; sha256="0xlkk5r02kq6q8mgymbw6qmb6wdvxskx6jzyciv26wyd3rgis3al"; depends=[BH cluster gamlss_dist ggplot2 plotrix Rcpp RcppEigen]; }; + PReMiuM = derive2 { name="PReMiuM"; version="3.1.4"; sha256="0x13bada1spf4wk8bwy9rdpjcfzd4s7ypfx88slpmg87gw4qc7s2"; depends=[ald BH cluster gamlss_dist ggplot2 plotrix Rcpp RcppEigen]; }; + PResiduals = derive2 { name="PResiduals"; version="0.2-4"; sha256="1a4sbdz0p8mqhcvpd1zkkinihvkqj1jw8m510k1yifmb4aav7xiw"; depends=[Formula MASS rms SparseM]; }; PSAboot = derive2 { name="PSAboot"; version="1.1.4"; sha256="1zfqpq0ibgazwppbxbmqvkvh9j5421xmj9132zghxki0xdy655ss"; depends=[ggplot2 ggthemes Matching MatchIt modeltools party PSAgraphics psych reshape2 rpart TriMatch]; }; PSAgraphics = derive2 { name="PSAgraphics"; version="2.1.1"; sha256="05c0k94dxddyrhsnhnd4jcv6fxbbv9vdkss2hvlf3m3xc6jbwvh9"; depends=[rpart]; }; - PSCBS = derive2 { name="PSCBS"; version="0.61.0"; sha256="04msj4rnrbdcjbm5aqbzm2sirb8q4wkag2fgsbdrca61v0lfg5q4"; depends=[DNAcopy future listenv matrixStats R_cache R_methodsS3 R_oo R_utils]; }; + PSCBS = derive2 { name="PSCBS"; version="0.62.0"; sha256="15r3rpqd4fpnssbbpkw0vxmgl3akid5r8n20nvr50bfzrl0w8j7f"; depends=[DNAcopy future listenv matrixStats R_cache R_methodsS3 R_oo R_utils]; }; + PSF = derive2 { name="PSF"; version="0.3"; sha256="0x2w0prcnyy82zvr0g2h18rc67r8wzvax3h9psk9dd4il8s4xfpw"; depends=[cluster data_table forecast knitr]; }; PSM = derive2 { name="PSM"; version="0.8-10"; sha256="1s60fr85xn3ynpvsbc3nw7vgz6h6jxy3yii1w6jpkw3iwl4bgn84"; depends=[deSolve MASS numDeriv ucminf]; }; - PST = derive2 { name="PST"; version="0.86"; sha256="0m6v7j36v47zdqqd3lf05w6pk0f3wfs1kix1qfvy2gj8n41jjmxf"; depends=[RColorBrewer TraMineR]; }; + PST = derive2 { name="PST"; version="0.94"; sha256="0f28zrnlficbi9iil6wbh51k9mghpkz63hw05lpmlpx1yl5nd0a6"; depends=[RColorBrewer TraMineR]; }; PTAk = derive2 { name="PTAk"; version="1.2-12"; sha256="1phxh2qbzsj2ia2dr6z30lhi765lk1m8lbk57sdgvm14fmi9v5nk"; depends=[tensor]; }; PTE = derive2 { name="PTE"; version="1.0"; sha256="10if2hh69yysi2y82m7is74hmzw2xpxijgb8bhy1d4g9n9lqidfs"; depends=[doParallel]; }; + PTXQC = derive2 { name="PTXQC"; version="0.82.2"; sha256="1slx4c2s3agrpfxhr4fs2gy9mhiqvnhsqs06m2wkan909fkjdw1z"; depends=[data_table ggdendro ggplot2 gridExtra gtable plyr proto RColorBrewer reshape2 rmarkdown seqinr yaml]; }; PVAClone = derive2 { name="PVAClone"; version="0.1-6"; sha256="0fj5p3z2cwnyshrr4rq88wpij2xax5p4aq0x4p342kadx9d6x2ga"; depends=[coda dclone dcmle]; }; - PVR = derive2 { name="PVR"; version="0.2.1"; sha256="1p87pj9g0qlc8ja6xdj2amny9pbkaqb34x2y9nkl1nj1pkwjq2s5"; depends=[ape splancs]; }; PWD = derive2 { name="PWD"; version="1.0"; sha256="0ksr3biaqd4p5a4lv28i4cwk1fn9822ndq2161mgvc1c344p06fj"; depends=[Rcpp RcppArmadillo]; }; + PWEALL = derive2 { name="PWEALL"; version="1.0.0"; sha256="1m2wg0fzmlf9xbynr7mw6izkjp3r32fm4l6njrfkcr9gqfz2dab8"; depends=[survival]; }; PabonLasso = derive2 { name="PabonLasso"; version="1.0"; sha256="158xg9i13nqy1bnpch8r6a7yas01hsdidmcypgccmyh7d7l52mr1"; depends=[]; }; Pade = derive2 { name="Pade"; version="0.1-4"; sha256="1kx5qpxd3x43bmyhk8g2af44hz3prhnrzrm571kfjmak63kym741"; depends=[]; }; PairViz = derive2 { name="PairViz"; version="1.2.1"; sha256="0mjp5p6n5azbhrm2hvb9xyqjfhd49pw9ia8k70749yc96ws1qqc7"; depends=[graph gtools TSP]; }; PairedData = derive2 { name="PairedData"; version="1.0.1"; sha256="025h5wjsh9c78bg6gmg6p6kvv2s6d5x7fzn3mp42mlybq0ry78p0"; depends=[ggplot2 gld lattice MASS mvtnorm]; }; + PanJen = derive2 { name="PanJen"; version="0.1"; sha256="09jl3ny4wcz7kd9kvqp5rscl8amxhpibzhny9lnakck3jrwa20hr"; depends=[Formula lasso2 mgcv RColorBrewer]; }; PanelCount = derive2 { name="PanelCount"; version="1.0.9"; sha256="1b6c83qypjc3ylvhh24xm4pjk8w34s24v0i9ddlmg92f1518hlkj"; depends=[Rcpp RcppArmadillo statmod]; }; Paneldata = derive2 { name="Paneldata"; version="1.0"; sha256="00hk340x5d4mnpl3k0hy1nypgj55as2j7y2pgzfk3fpn3zls5zib"; depends=[]; }; ParDNAcopy = derive2 { name="ParDNAcopy"; version="2.0"; sha256="017xwznhfibi8kp0ifww02c0qcq0vxs06rjww4kcp2bvdmld8kc4"; depends=[DNAcopy]; }; ParallelForest = derive2 { name="ParallelForest"; version="1.1.0"; sha256="1xa9lfgrvzv7bvv1aaabcfk4372p8x5gxgj463h5ggf9x177lj5j"; depends=[]; }; ParallelPC = derive2 { name="ParallelPC"; version="1.2"; sha256="07y7xb16865khxkvwsk1yglzyy7ja4aj2wpkipaz48i77c3x8bi2"; depends=[]; }; - ParamHelpers = derive2 { name="ParamHelpers"; version="1.7"; sha256="0ddb50c8xvs85422ig8chrrn0vaz9dsqn95409i1qdfg9rf916fr"; depends=[BBmisc checkmate]; }; + ParallelTree = derive2 { name="ParallelTree"; version="0.1.2"; sha256="0x99x1iycx8ik8cih972awnxifvmhbrmjrf2csmnn9fw4rsqn0p5"; depends=[ggplot2]; }; + ParamHelpers = derive2 { name="ParamHelpers"; version="1.10"; sha256="0nzsl3hby4dhnp7rw47zjmdrrfsgp5w1ai9fpw3bgc4k5sk9nql0"; depends=[BBmisc checkmate]; }; ParentOffspring = derive2 { name="ParentOffspring"; version="1.0"; sha256="117g8h0k65f2cjffigl8n4x37y41rr2kz33qn2awyi876nd3mh93"; depends=[]; }; ParetoPosStable = derive2 { name="ParetoPosStable"; version="1.1"; sha256="1fwji5wrhbxr089dll812csamvb5q2pxn1607rpirarifgfbj28m"; depends=[ADGofTest doParallel foreach lmom]; }; + Partiallyoverlapping = derive2 { name="Partiallyoverlapping"; version="1.0"; sha256="1wwfq0zwf2b2wlq4pwhw92d02f715l7bkc0si7gndk0mp2pibcrx"; depends=[]; }; Pasha = derive2 { name="Pasha"; version="0.99.21"; sha256="0z77n5wplapdfcqxbak7mg58a9nnnwwqcznah5lswlwa0prz18jc"; depends=[Biostrings bitops GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges Rsamtools rtracklayer S4Vectors ShortRead]; }; - PatternClass = derive2 { name="PatternClass"; version="1.5"; sha256="1paw39xm2rqjnc7pnbya7gyl160kzl56nys9g0y1sa6cqycy3y5x"; depends=[SDMTools]; }; + PathSelectMP = derive2 { name="PathSelectMP"; version="1.0"; sha256="19gkd7il4whxp1mm4pinlrl8yj09b5sknz8c4g75n2hhh96libns"; depends=[mice MplusAutomation]; }; + PatternClass = derive2 { name="PatternClass"; version="1.7.1"; sha256="11r4p4s2pm0c4fmnpijzz5srhpai444mbx5nszhkssfsp9rh7cm9"; depends=[SDMTools]; }; + PdPDB = derive2 { name="PdPDB"; version="1.0"; sha256="1rnphdklyzznpzf57gwlnr498612d54kl5jkqnza6h8if7nqr4kd"; depends=[plyr]; }; + Peacock_test = derive2 { name="Peacock.test"; version="1.0"; sha256="0ypvwywipyh8lm8xkazsfjgjpvvyi2g8kid63qff11372p33m6xs"; depends=[]; }; Peaks = derive2 { name="Peaks"; version="0.2"; sha256="0a173p5cdm1jnm7bwsvjpxh4dccy593g02c4qjwky1cgzy5rvin2"; depends=[]; }; - PearsonDS = derive2 { name="PearsonDS"; version="0.97"; sha256="0bsdj4zir12zkv8yhq1z6dqjzhkb9l0f88jrr4iyclns1pcqvrvi"; depends=[]; }; + PearsonDS = derive2 { name="PearsonDS"; version="0.98"; sha256="11y44j7js67k4kgg2rdc3y23ckaih63fvm5li7z6p6d8anlx1fcv"; depends=[]; }; PearsonICA = derive2 { name="PearsonICA"; version="1.2-4"; sha256="0jkbqha1nb9pf72ffki47wymsdmd50smkdhvpzvanv4y2rmqfhvg"; depends=[]; }; PedCNV = derive2 { name="PedCNV"; version="0.1"; sha256="09qxcjzwdgzdkbj28rzmfv7k3q2qsiapnvx3m45a835r57h5gynp"; depends=[ggplot2 Rcpp RcppArmadillo]; }; - PenCoxFrail = derive2 { name="PenCoxFrail"; version="1.0.0"; sha256="1jcwk4vr73brkg4syrbybkfdhbrzs2y9qxd7286h27i67xn1s199"; depends=[Matrix Rcpp RcppArmadillo survival]; }; + PeerPerformance = derive2 { name="PeerPerformance"; version="2.1.2"; sha256="07as5csvrlr3a55miadhbcvjrjag7g69wxmb8z7rpipppa8f9q7y"; depends=[lmtest sandwich snow]; }; + PenCoxFrail = derive2 { name="PenCoxFrail"; version="1.0.1"; sha256="0snjf8jxzyf30xj3wx9p6g073dqw592l1j1c6yxfg8y4kgzhzwq7"; depends=[Matrix Rcpp RcppArmadillo survival]; }; PepPrep = derive2 { name="PepPrep"; version="1.1.0"; sha256="1s2xn05xry50l9kf1mj6yd1dpc7yp6g3d00960hswvhznb0a4l84"; depends=[biomaRt stringr]; }; - Peptides = derive2 { name="Peptides"; version="1.1.1"; sha256="0a6806n7lpdyvmsbvrm0fd124dxd4q8ka0dxb22ri26n60vcyybr"; depends=[]; }; - PerFit = derive2 { name="PerFit"; version="1.4"; sha256="1pjyns9qsqr7c3m5n8a12z3i2b0y98alq0fs84r909m4m5lb22k3"; depends=[fda Hmisc irtoys ltm MASS Matrix mirt]; }; - PerMallows = derive2 { name="PerMallows"; version="1.10"; sha256="1h3r4cpyc0fsxz4vr75jyah9gjwj6f7sbmm9yk7p8kk1wagp4a44"; depends=[Rcpp]; }; - Perc = derive2 { name="Perc"; version="0.1.1"; sha256="0yckjgbapcja3qp718f48r1wfhc25dy5y8138x45w5vbdsj4jrrx"; depends=[]; }; + PepSAVIms = derive2 { name="PepSAVIms"; version="0.9.1"; sha256="0m4jrq6wcjy0k80gvrnm9f7kvi1ifx9182xfq0psyaxpj0ggvzij"; depends=[elasticnet]; }; + Peptides = derive2 { name="Peptides"; version="1.2.1"; sha256="0s6d3b9qgc38az11pa7r427dzcfhf2a2hl4c97av8c43hfvyrnzi"; depends=[]; }; + PerFit = derive2 { name="PerFit"; version="1.4.1"; sha256="0mzd9yrgsswxlhljlk8nxi0dhy3k4a9jax9w9c9s29j4m7z9jf01"; depends=[fda Hmisc irtoys ltm MASS Matrix mirt]; }; + PerMallows = derive2 { name="PerMallows"; version="1.12"; sha256="0f886q0vgplrprzwrjcjh4g92i1nzkzpzp4qhr4n9kkz8rrxf125"; depends=[Rcpp]; }; + Perc = derive2 { name="Perc"; version="0.1.2"; sha256="0p6l4b536jjz4lmgsdrxqsh77lx4vkb6hbyd6vhbc102m5x3b1yc"; depends=[]; }; PerfMeas = derive2 { name="PerfMeas"; version="1.2.1"; sha256="1x7ancmb41zd1js24rx94plgbssyc71z2bvpic6mg34xjkwdjw93"; depends=[graph limma RBGL]; }; PerformanceAnalytics = derive2 { name="PerformanceAnalytics"; version="1.4.3541"; sha256="1czchsccsbdfjw743j6rm101q2q01pggyl8zmlva213pwm86zb3v"; depends=[xts zoo]; }; + PeriodicTable = derive2 { name="PeriodicTable"; version="0.1.1"; sha256="0r14byi2pmgvmpl07dhqq4m00ddfaixnzqd5kgav1gxmsw6bk35l"; depends=[]; }; PermAlgo = derive2 { name="PermAlgo"; version="1.1"; sha256="16fhdgr4nza9yknsbwiv8pgljfwp8hhva0crs4dbfd0w4j97n5fp"; depends=[]; }; - PhViD = derive2 { name="PhViD"; version="1.0.6"; sha256="04vh3892fwb8pn2wmsw5449al80z5sm6avi6b67shky942dasl17"; depends=[LBE MCMCpack]; }; + PersomicsArray = derive2 { name="PersomicsArray"; version="1.0"; sha256="1d5gxd65b01m13rgbdhk6w3l43vqcbdk0s1pbgc8h6cnipj55z0i"; depends=[jpeg raster stringr tiff]; }; + PhViD = derive2 { name="PhViD"; version="1.0.8"; sha256="038pw24sb8ja8pbbmj05rww6413i2ljybb2dxwgrpffv22aqawmc"; depends=[LBE MCMCpack]; }; PharmPow = derive2 { name="PharmPow"; version="1.0"; sha256="0gabkd8p4zsig9p697lyk8m2jxb5abjk81rpzd5ih1yk1qanhsn5"; depends=[scatterplot3d]; }; - PharmacoGx = derive2 { name="PharmacoGx"; version="1.1.4"; sha256="1xzirhj05gjl4jszz493g8r629jpllnkqk19yjyjj69gmnlalpdy"; depends=[Biobase caTools downloader magicaxis piano RColorBrewer]; }; PhaseType = derive2 { name="PhaseType"; version="0.1.3"; sha256="092dqyqfaxj8qpwxcjb5cayhnq597rfjz1xb93ps4nrczycqs0l6"; depends=[coda ggplot2 reshape]; }; Phxnlme = derive2 { name="Phxnlme"; version="1.0.0"; sha256="0h9mi8p95rp1s8xsdv38j9fpy2cy9zvjnldjmnj0n469kimp2782"; depends=[ggplot2 gridExtra lattice manipulate testthat]; }; - PhyActBedRest = derive2 { name="PhyActBedRest"; version="1.0"; sha256="0fpg17fwap12da7xka8pnd1wk6rbmw3zl099588g2r05wq3425sx"; depends=[]; }; - PhySortR = derive2 { name="PhySortR"; version="1.0.6"; sha256="0v5d0klii1sfs43np18aj2587li3jawqirvabjf51lz2iciagcl9"; depends=[ape phytools]; }; - PhyloMeasures = derive2 { name="PhyloMeasures"; version="1.1"; sha256="1wxm9yiplasxhqxs3qxys46k1i7n459frxxh275abczafq46l8if"; depends=[ape]; }; + PhyInformR = derive2 { name="PhyInformR"; version="1.0"; sha256="10d720ww909b1xmdrms554pnn0757nzppnrniar4n157mh0qw7ms"; depends=[ape doParallel foreach geiger ggplot2 gplots gridExtra hexbin iterators PBSmodelling phytools RColorBrewer]; }; + PhySortR = derive2 { name="PhySortR"; version="1.0.7"; sha256="1xpxkd2bf3xdsfwa0bzkppr6y7p6v7s4iy0x0m8fiwj93n9jh0pz"; depends=[ape phytools]; }; + PhyloMeasures = derive2 { name="PhyloMeasures"; version="2.1"; sha256="01axs78s10y1bkx8dbs9vvnphdzik7hpibkwyib1x9mznmyg90hr"; depends=[ape]; }; + PhylogeneticEM = derive2 { name="PhylogeneticEM"; version="1.0.0"; sha256="0xrvrfq28a9ivdrbc5s05bpxk4vsij1qqyv01md5c687bl45pj7a"; depends=[ape capushe foreach gglasso glmnet LINselect MASS Matrix plyr Rcpp RcppArmadillo robustbase]; }; + PhysActBedRest = derive2 { name="PhysActBedRest"; version="1.0"; sha256="0gmqh700cf6aiagb45iyyf85pgp3b86fx7fbv9lrsm4mda0r8h75"; depends=[chron lubridate stringr]; }; PhysicalActivity = derive2 { name="PhysicalActivity"; version="0.1-1"; sha256="1aqyip7psf3pdrxkpidfldkk9naihvnc7s3n6w6vvr9h1l5mpmvc"; depends=[]; }; Pijavski = derive2 { name="Pijavski"; version="1.0"; sha256="1027lmmk17br9zxah980j6l3k2p92065bwigw6gpy9g0g5jjl4f1"; depends=[Rcpp]; }; - PivotalR = derive2 { name="PivotalR"; version="0.1.17.45"; sha256="13rw7y2n2hnyj2lslkb78qhj05765k9snkgdhh4dfnlgnyb19kkw"; depends=[Matrix]; }; + PivotalR = derive2 { name="PivotalR"; version="0.1.18.3"; sha256="14l7y57zmfr7h4bq01j83am2plxx320kkhbsh0x2ypif9dni4rf2"; depends=[Matrix]; }; + Planesmuestra = derive2 { name="Planesmuestra"; version="0.1"; sha256="0v7l4hrfckcf7zmk0ihq2ij0qli7x12j17vd6752d1yjk27fgk57"; depends=[]; }; + PlasmaMutationDetector = derive2 { name="PlasmaMutationDetector"; version="1.5.2"; sha256="0bhrz0c134ckfw8b8f0pwa5jkwjy1v7brqcsi6rjdywg0zw2qhxw"; depends=[GenomicRanges ggplot2 robustbase Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; + Plasmidprofiler = derive2 { name="Plasmidprofiler"; version="0.1.6"; sha256="10m3knmz0596rm30ncyfprar6l42bjm7r34n4pjz1biqmiz6yz6k"; depends=[ape dplyr gdata ggdendro ggplot2 gridExtra gtable htmlwidgets magrittr plotly plyr RColorBrewer reshape2 stringr]; }; PlayerRatings = derive2 { name="PlayerRatings"; version="1.0-1"; sha256="0fdk70vfxgmf2hy6j0djbksi5znvilsi74rrbqd0lfhi841j15qj"; depends=[]; }; PlotPrjNetworks = derive2 { name="PlotPrjNetworks"; version="1.0.0"; sha256="13kbyx2phxb3kss6l32f7krf4k5i350indlsmbhav686v0h3nsgp"; depends=[ggplot2 reshape2]; }; PlotRegionHighlighter = derive2 { name="PlotRegionHighlighter"; version="1.0"; sha256="0n1nkfr3sdaq6f5p9kgx4slrsvhpdbax3rinrkfkb1vnjj4swj77"; depends=[]; }; + PoSI = derive2 { name="PoSI"; version="1.0"; sha256="0c08czjvm09mcnkqnas4l22v22r9akgklnacx1j62smk4m546q2m"; depends=[]; }; PogromcyDanych = derive2 { name="PogromcyDanych"; version="1.5"; sha256="1m6sycca44h8kdf9cd67annw6dxxwiscidzfnjrzqmqa4v6n7rsg"; depends=[dplyr SmarterPoland]; }; PoiClaClu = derive2 { name="PoiClaClu"; version="1.0.2"; sha256="1j593sc344h9iy7if1ppihx2qd73dv32d77d8ckac43i7b2lig24"; depends=[]; }; - PoisBinNonNor = derive2 { name="PoisBinNonNor"; version="1.0"; sha256="0a2v5iwrglg4r6zj5qbbg66638kcf45mxw2gs3qv2zpnfkabadnq"; depends=[BB corpcor Matrix mvtnorm]; }; - PoisBinOrd = derive2 { name="PoisBinOrd"; version="1.1"; sha256="151qqxd2rgh6jxzpclxxa51apiif77j122r2w23bdijkb85sqy9z"; depends=[corpcor GenOrd Matrix mvtnorm]; }; - PoisBinOrdNonNor = derive2 { name="PoisBinOrdNonNor"; version="1.0"; sha256="1x41mwvdria48cjr3dyq4d0l8v8kp3v9aayfl6jfxy6dhjwdg4vz"; depends=[BB corpcor GenOrd MASS Matrix]; }; - PoisBinOrdNor = derive2 { name="PoisBinOrdNor"; version="1.1"; sha256="1d6bb2486g5llpbpljmvagw4jijwslqi52jnpkamgzwz6w9y9svy"; depends=[corpcor GenOrd Matrix mvtnorm psych]; }; - PoisNonNor = derive2 { name="PoisNonNor"; version="1.0"; sha256="1i00knyv5m6p9rllkc440cg2agzs36am5b5w9n90506nq36xp8qm"; depends=[BB corpcor MASS Matrix]; }; - PoisNor = derive2 { name="PoisNor"; version="1.0"; sha256="147ma6qg6nwxzp022jm5mpijhg3jz489qclr9g2mli5mhgm31f8j"; depends=[corpcor Matrix mvtnorm]; }; + PoisBinNonNor = derive2 { name="PoisBinNonNor"; version="1.1"; sha256="02xa028jrc50fmrasidjsh5h6z9i8gyyc68q6809ic1bs23sq06i"; depends=[BB corpcor Matrix mvtnorm]; }; + PoisBinOrd = derive2 { name="PoisBinOrd"; version="1.2"; sha256="0ig3iqj0h2v4a4ahf8l2nfvjx4846skkdk5sb7qab8bkqqqkmbpy"; depends=[corpcor GenOrd Matrix mvtnorm]; }; + PoisBinOrdNonNor = derive2 { name="PoisBinOrdNonNor"; version="1.2"; sha256="0bpgr3zzma04l8652da39vifszjyq17sx2hdq5nsqw3fb2s13zyh"; depends=[BB corpcor GenOrd MASS Matrix]; }; + PoisBinOrdNor = derive2 { name="PoisBinOrdNor"; version="1.3"; sha256="0y29p06q977qiybzgay7yx779blv29b8i1vmxfwklc5bm3xiplri"; depends=[corpcor GenOrd Matrix mvtnorm psych]; }; + PoisNonNor = derive2 { name="PoisNonNor"; version="1.2"; sha256="01mixrlpk1vcqh9v5qiz9vkn9rkwks3hss91sjyyw3jjqpggxvp6"; depends=[BB corpcor MASS Matrix]; }; + PoisNor = derive2 { name="PoisNor"; version="1.1"; sha256="0z5h8rdb7kjqzasrdvkpkvwv05rfazv92cza8pln1qrvi6cdk5f3"; depends=[corpcor Matrix mvtnorm]; }; PoissonSeq = derive2 { name="PoissonSeq"; version="1.1.2"; sha256="1hhx0gv06cp6hm6h36mqy411qn9x15y45crpzbyf8crfs85c6gbg"; depends=[combinat]; }; - PolyPatEx = derive2 { name="PolyPatEx"; version="0.9.1"; sha256="1j7pxkwjrhmgffrqpkykvsdvflqn93z6in2ysn1gs6qvk5vlrnbi"; depends=[gtools]; }; + PolyPatEx = derive2 { name="PolyPatEx"; version="0.9.2"; sha256="1z1hwvsw7b6cz5xfy35a5ldrzb3fhp3swiyz56v1zqblpsaz8n9g"; depends=[gtools]; }; + PolyTrend = derive2 { name="PolyTrend"; version="1.2"; sha256="17n6phkzgaqrlzs8x1l5smnij1gxfklr0zj9pqfy5n8xqnpwssm5"; depends=[]; }; PolynomF = derive2 { name="PolynomF"; version="0.94"; sha256="006ds50ivq91v2jyhgpm5rfaipxbzsnljrki6fjplcw07g0frz71"; depends=[]; }; - Pomic = derive2 { name="Pomic"; version="1.0.2"; sha256="1i3zsz7gc4n4vid3yi3srrv04qk1678wqyyw303pfibiyfd4m80q"; depends=[]; }; - PopED = derive2 { name="PopED"; version="0.3.0"; sha256="1ahgnrzjldiqj0a561x8phad62qb5ldrck1az3qcrqvm7n6h6icb"; depends=[codetools dplyr ggplot2 MASS mvtnorm nlme]; }; + Pomic = derive2 { name="Pomic"; version="1.0.3"; sha256="16c0z50zlr9vb1g3j7zdgm2nx595mbwmr4hry184fvkv2hrkk4xc"; depends=[]; }; + PopED = derive2 { name="PopED"; version="0.3.2"; sha256="1lvzqpij4dqbw144ya25bhlx96mwaxz932r0bl3jsx1si9ijb8xz"; depends=[codetools dplyr ggplot2 MASS mvtnorm]; }; PopGenKit = derive2 { name="PopGenKit"; version="1.0"; sha256="0l4mbm0cyppgvcw2cbimrv29aiciyj00k8wfwcj5zr8sh7fgfhs4"; depends=[]; }; - PopGenReport = derive2 { name="PopGenReport"; version="2.2"; sha256="0chpfgxpjbp0ci1h2q60gsbwdbqw14wa3pd7y6la3bz7pmsdbnwf"; depends=[ade4 adegenet calibrate data_table dismo gap gdistance genetics GGally ggplot2 knitr lattice mmod pegas plyr R_utils raster reshape rgdal RgoogleMaps sp vegan xtable]; }; - PopGenome = derive2 { name="PopGenome"; version="2.1.6"; sha256="1wk5k5f80l7k6haiaikhgaqn67q5n7gm632i3yz3frj1ph7bwjb7"; depends=[ff]; }; + PopGenReport = derive2 { name="PopGenReport"; version="3.0.0"; sha256="0z4g7ll3dk9mgawnn7k0ysgj8w55adivc4zcrr898x399g7vnfx4"; depends=[ade4 adegenet calibrate data_table dismo gap gdistance genetics GGally ggplot2 knitr lattice mmod pegas plyr R_utils raster reshape rgdal RgoogleMaps sp vegan xtable]; }; + PopGenome = derive2 { name="PopGenome"; version="2.2.0"; sha256="1rwqv7pa5is2ciyx25q042jxk7jwvr7v64r2z32ak8dc1218x35a"; depends=[ff]; }; PopVar = derive2 { name="PopVar"; version="1.2.1"; sha256="09az5wa0zai6axhvrljqdjn74nb7jikqwjqy8f570qxb6jbgfgay"; depends=[BGLR qtl rrBLUP]; }; PortRisk = derive2 { name="PortRisk"; version="1.1.0"; sha256="05yxqcv0cijy3s9zx68f9xy59jv55kmj3v0pz5pgl17j23kb9rlc"; depends=[copula MASS MCMCpack tseries zoo]; }; PortfolioAnalytics = derive2 { name="PortfolioAnalytics"; version="1.0.3636"; sha256="0xva3ff8lz05f1jvx8hgn8rpgr658fjhf3xyh9ga1r7dii13ld50"; depends=[foreach PerformanceAnalytics xts zoo]; }; - PortfolioEffectEstim = derive2 { name="PortfolioEffectEstim"; version="1.2"; sha256="0qf9h4gwq148m4q9x2avbzw9m07zbs4ljhlqf8glk50bs6vjpfi2"; depends=[PortfolioEffectHFT rJava]; }; - PortfolioEffectHFT = derive2 { name="PortfolioEffectHFT"; version="1.5"; sha256="0mwwfsf6bngxdk10sya19k2mhy4pq9pgyzz59pd5zxgs0rx4hl6k"; depends=[ggplot2 rJava]; }; + PortfolioEffectEstim = derive2 { name="PortfolioEffectEstim"; version="1.4"; sha256="1sfgkwyn7vfy3rqb1cglywiv5xmyxhzvj38vgrvfq5jf3hvzsg21"; depends=[PortfolioEffectHFT rJava]; }; + PortfolioEffectHFT = derive2 { name="PortfolioEffectHFT"; version="1.7"; sha256="043bpyrzl5r7gifi450l162sp7l5pgb1p6arfbf118i0jg0m61j9"; depends=[ggplot2 rJava zoo]; }; PottsUtils = derive2 { name="PottsUtils"; version="0.3-2"; sha256="05ds0a7jq63zxr3jh66a0df0idzhis76qv6inydsjk2majadj3zv"; depends=[miscF]; }; PoweR = derive2 { name="PoweR"; version="1.0.5"; sha256="0zr2p2hyxdh194n3s0g71q9zyvl67czp0wc39zl3fivfk3zkf98r"; depends=[Rcpp RcppArmadillo]; }; - Power2Stage = derive2 { name="Power2Stage"; version="0.4-3"; sha256="1bad2r9kdpg5i9pqz6754xywwm1c1mbl16dxdnb92pjy2pkq1q7x"; depends=[mvtnorm PowerTOST]; }; - PowerTOST = derive2 { name="PowerTOST"; version="1.3-4"; sha256="0zjbnxd9l8m9bw7p3px0qxv8xjhm2w4fx0i1j0jpm95q5i01cgmm"; depends=[mvtnorm]; }; - PracTools = derive2 { name="PracTools"; version="0.3"; sha256="1n9h28nzxy0fs27w1gwyrbaijr437xqiprmkal0i4dz6da7w4928"; depends=[]; }; + Power2Stage = derive2 { name="Power2Stage"; version="0.4-5"; sha256="0wjry83dkrnl6bblb0688hx5ihwwkya05dwb9nrnv39033ksd0a9"; depends=[mvtnorm PowerTOST]; }; + PowerTOST = derive2 { name="PowerTOST"; version="1.4-3"; sha256="1yxxg0y8w6g5138wznd3fil3pmizb20ar1h5gavlbil5b1bhhm44"; depends=[cubature mvtnorm]; }; + PowerUpR = derive2 { name="PowerUpR"; version="0.1.3"; sha256="1znhkyxl8qrs288zf0cr6sxgq6ir029fmilda0k73scc6k1jxz7f"; depends=[nloptr]; }; + PracTools = derive2 { name="PracTools"; version="0.4"; sha256="1klknzbpgjyvrws6d7gwrdmglc16xag3pa3i8rk0zg62wvyb4l1v"; depends=[]; }; + PreKnitPostHTMLRender = derive2 { name="PreKnitPostHTMLRender"; version="0.1.0"; sha256="1749cd734f4bf0n4068s2m617k6as8h9bwp44mm3la2xy3vjf5g1"; depends=[knitr rmarkdown XML]; }; + PredPsych = derive2 { name="PredPsych"; version="0.1"; sha256="1nhaainpp9qr30l6g74vl2qcdy64amrn08m4fsjz3ahbvr908mkj"; depends=[caret e1071 ggplot2 MASS mclust party plyr randomForest rpart]; }; PredictABEL = derive2 { name="PredictABEL"; version="1.2-2"; sha256="08c7j2in1wlas6nmy44s08cq86h5fizqbhsnq312dllqdzmb2h9s"; depends=[epitools Hmisc PBSmodelling ROCR]; }; + PredictTestbench = derive2 { name="PredictTestbench"; version="1.1.3"; sha256="14np4zvr0labhqxzsv07iqzldfxmnsfk91qpfqz7vyiq0vwcymp4"; depends=[forecast ggplot2 imputeTestbench PSF reshape2]; }; PredictiveRegression = derive2 { name="PredictiveRegression"; version="0.1-4"; sha256="15vkisj3q4hinc3d537s8inhj3wk62q67qhy050xmp9j563ainmd"; depends=[]; }; PresenceAbsence = derive2 { name="PresenceAbsence"; version="1.1.9"; sha256="17qn4ggkr5aqml45nkihj1j35y479ywkm1xcfkb2g8ky66jb0c0s"; depends=[]; }; - PrevMap = derive2 { name="PrevMap"; version="1.3.2"; sha256="0dy14cyzlnf33rw3f2imfiskblg833cp3fflpw28zr52m36crrd2"; depends=[geoR maxLik pdist raster splancs truncnorm]; }; + PrevMap = derive2 { name="PrevMap"; version="1.4"; sha256="1yvq2lpylwkhhbz3ys06a6fyfcwcc9zq58ihgh3yhs6f79jcfv2m"; depends=[geoR Matrix maxLik numDeriv pdist raster splancs truncnorm]; }; PrivateLR = derive2 { name="PrivateLR"; version="1.2-21"; sha256="1jwq8f0dnngj8sfbmcmxy34nkkq6yjw0mq3w1f8rasz67v3bwzp3"; depends=[]; }; ProDenICA = derive2 { name="ProDenICA"; version="1.0"; sha256="04gnsnd0xzw3bfbssdp06bar0lk305ry2c97pmwxgiz3ay88dfsj"; depends=[gam]; }; + ProFit = derive2 { name="ProFit"; version="1.0.2"; sha256="0wqm5c3syrpkbb7rwkfgfbva52a0bjbl8fl8rxi624vc4rwicr87"; depends=[fftw FITSio LaplacesDemon magicaxis R2Cuba RColorBrewer Rcpp]; }; ProNet = derive2 { name="ProNet"; version="1.0.0"; sha256="10r0gcxv0djrw99nd6a1jrnwvqmidw10ll645gvkp8l39li0107n"; depends=[igraph linkcomm MCL Rcpp]; }; - ProTrackR = derive2 { name="ProTrackR"; version="0.2.3"; sha256="0zdysy58s2prla07qfhlhsycmnnf7ydjz5dlhhng5da3bc1nlrq2"; depends=[audio lattice signal tuneR]; }; + ProTrackR = derive2 { name="ProTrackR"; version="0.3.4"; sha256="10xwj1d7k1n85hjdwh7q7pkbmcb625y6fzcbyvnplin25v2b03qc"; depends=[audio lattice signal tuneR XML]; }; ProbForecastGOP = derive2 { name="ProbForecastGOP"; version="1.3.2"; sha256="0fnw3g19lx4vs8vmn4qdirvybkiy2cxkhwkn9qa3phz45iixnvx4"; depends=[fields RandomFields]; }; ProbYX = derive2 { name="ProbYX"; version="1.1-0"; sha256="0dphf6jr72l235v3yjhwi8bqmv6ac7yrbyfwhx4qjrrcdnsb7qhl"; depends=[rootSolve]; }; ProbitSpatial = derive2 { name="ProbitSpatial"; version="1.0"; sha256="0pq5bsjd00qc83c7x8vlpsxdksywlnfg7rlsvb6j21fz9wi3hpas"; depends=[Matrix numDeriv RANN Rcpp RcppEigen speedglm]; }; ProfessR = derive2 { name="ProfessR"; version="2.3"; sha256="1y88as4xjvdm2v2ms5l7c6ziq7sll6qkrpgzdd4xnbcjx7c0g9w8"; depends=[RPMG]; }; ProfileLikelihood = derive2 { name="ProfileLikelihood"; version="1.1"; sha256="16cdp1nimhg1sd2x0qbffm7clgk54p0838y688z8lnsrjaggmb0x"; depends=[MASS nlme]; }; ProgGUIinR = derive2 { name="ProgGUIinR"; version="0.0-4"; sha256="0srhk42ssx4i096sbs4jacqjsc1ffqjxjgvpplzshlqaby1h3795"; depends=[ggplot2 MASS svMisc]; }; - ProjectTemplate = derive2 { name="ProjectTemplate"; version="0.6"; sha256="0ijsy49gghnki5l63vg5l2awy57kbxbih618j5i5lxs44g15sa5v"; depends=[]; }; + ProjectTemplate = derive2 { name="ProjectTemplate"; version="0.7"; sha256="0jf8r9lbczvjvnzf15lz6fm31naxm1fpqni88484yrd6vpxjacq6"; depends=[]; }; + ProliferativeIndex = derive2 { name="ProliferativeIndex"; version="1.0.0"; sha256="1baf4v9c2pqqmlgxs1jf7fhwqbsw0l1g7rdiia21acxix2j3b7wj"; depends=[]; }; PropCIs = derive2 { name="PropCIs"; version="0.2-5"; sha256="0wnc5h4390w4rglr7gjh6827f5r7gdhajx1iwp5fggdlm808hgq7"; depends=[]; }; PropClust = derive2 { name="PropClust"; version="1.4-2"; sha256="13ac895i7ljayyqcjjmwvwar6wf1j0qssazcb5nlz8rw155qwavs"; depends=[dynamicTreeCut flashClust]; }; PropScrRand = derive2 { name="PropScrRand"; version="1.1"; sha256="0cj62dzg4zm8d1g8h7qmviiwm93cwplppbi0p674fmmf1wy84v9s"; depends=[]; }; ProteinDescriptors = derive2 { name="ProteinDescriptors"; version="0.1.0"; sha256="1ydm8aym1wwxmfh4krh84nmj1wkgb574igg1sywl58l3qlnhya0l"; depends=[]; }; + Przewodnik = derive2 { name="Przewodnik"; version="0.16.12"; sha256="1aq80aqflfm1ypqa51h10mc3g0qdr651j6g1b7008k7h0ryq42gv"; depends=[PBImisc PogromcyDanych]; }; PsiHat = derive2 { name="PsiHat"; version="1.0"; sha256="0an71x75j6ih55alxp7kfwi0qf4z3y5bwswrjk01z2w4b9glacqh"; depends=[qvalue]; }; PsumtSim = derive2 { name="PsumtSim"; version="0.4"; sha256="0079kb1bgsxs4cwmn33rbbk2jgq39rdjfgz9k9hc64iyzz0i6na3"; depends=[boot EffectsRelBaseline]; }; - PtProcess = derive2 { name="PtProcess"; version="3.3-10"; sha256="175gdyvj1l1d3vm00p0z4sn1ggaf3hly383ngzx2l029nsrxz0zf"; depends=[]; }; + PtProcess = derive2 { name="PtProcess"; version="3.3-12"; sha256="14d39xxgkqnqq79v9sp6g9csj2rp6pix2hzg9acjdmw1xyadn71h"; depends=[]; }; PubBias = derive2 { name="PubBias"; version="1.0"; sha256="0dr5dhfx57knrs05pbx9ngg4k2937n8gjzsgd0jfqd8dfxhy051k"; depends=[R_utils rmeta]; }; - PubMedWordcloud = derive2 { name="PubMedWordcloud"; version="0.3.2"; sha256="1xn4ygpvj6pm548yj5kjh2l8n59p2caihfpbkykvbkzgf7hq8p00"; depends=[RColorBrewer RCurl stringr tm wordcloud XML]; }; + PubMedWordcloud = derive2 { name="PubMedWordcloud"; version="0.3.3"; sha256="1d9k5ilrxz9brv08nl2iqpalqjf4g0bv49qxywq970g66jyxjjij"; depends=[RColorBrewer RCurl stringr tm wordcloud XML]; }; PurBayes = derive2 { name="PurBayes"; version="1.3"; sha256="0nbm4cyrwfbwwbjbjkylr86cshaqbvbif6dkp4fag8kbcgyyx5qh"; depends=[rjags]; }; PwrGSD = derive2 { name="PwrGSD"; version="2.000"; sha256="0qxvws9mfrnqw5s24qhqk6cbffjm13z7awyxdmnilazghpiq1p7s"; depends=[survival]; }; PythonInR = derive2 { name="PythonInR"; version="0.1-3"; sha256="0p4h30wqsz8czz6r4xjg5q79190hq242x9fsaw7v5433px1gmr44"; depends=[pack R6]; }; - QCA = derive2 { name="QCA"; version="2.1"; sha256="0zdg2s0y1qgxyvrg5iims9il6cnsbf0hchj3l8z1b9w50gggdm8k"; depends=[lpSolve QCAGUI shiny venn]; }; - QCA3 = derive2 { name="QCA3"; version="0.0-7"; sha256="0i9i2i633sjnzsywq51r2l7fkbd4ip217hp0vnkj78sfl7zf1270"; depends=[lpSolveAPI]; }; - QCAGUI = derive2 { name="QCAGUI"; version="2.1"; sha256="1lbdx2hrj8im5z58x20l4sgihvc2njw8v1dgy3cmwcfka1l1dw3p"; depends=[lpSolve shiny venn]; }; + QCA = derive2 { name="QCA"; version="2.5"; sha256="0f0gia23aqkhvxna15vcck75im4r3nc6mbs1svg5hldc33088wh7"; depends=[fastdigest lpSolve shiny venn]; }; + QCA3 = derive2 { name="QCA3"; version="0.0-8"; sha256="1cqk5hhx57c4ayg0kn4gz3sfwm1jik96a80psfyb7cnmbxwdgw2s"; depends=[lpSolveAPI]; }; + QCAGUI = derive2 { name="QCAGUI"; version="2.5"; sha256="1v15rd5wmdx1zdssklbchw71cr9v1mjp1mfkv5kg2xa3hp0x2hz9"; depends=[QCA]; }; QCAfalsePositive = derive2 { name="QCAfalsePositive"; version="1.1.1"; sha256="03qzb6vdnbri52gfx3laz14988p2swdv9m8i5z7gpsv3f3bjrxbp"; depends=[]; }; - QCApro = derive2 { name="QCApro"; version="1.0-0"; sha256="1k7av1b8wmr91a6prvgkny65hvf185389shgxncywp51jqaxpikp"; depends=[lpSolve]; }; - QCAtools = derive2 { name="QCAtools"; version="0.2.1"; sha256="167vjlh8b1a1wxvfnqbh4x429xvfhf789v8k6brlh7x5n6bmk114"; depends=[directlabels ggplot2 QCAGUI stringr]; }; + QCApro = derive2 { name="QCApro"; version="1.1-1"; sha256="0rp1mcgp21m4wi301kwb7vzilb4z0pq78h9wavkpyxnq0ch6hnlh"; depends=[lpSolve]; }; + QCAtools = derive2 { name="QCAtools"; version="0.2.3"; sha256="1q49l2mf02hqvz2ahqjdx7i3yxniy7dn2s74xjl9l6zdq8bypfw2"; depends=[directlabels ggplot2 QCA stringr]; }; + QCEWAS = derive2 { name="QCEWAS"; version="1.1-0"; sha256="0snqg1q9848g8gmxxlz1fhw4cnfxwp28qkfyrpc0yzmkswvysx6v"; depends=[]; }; QCGWAS = derive2 { name="QCGWAS"; version="1.0-8"; sha256="1wn1kddgfmqv326pihnavbgsbd2yxrlq5s2xgi6kbprssxvj8bk1"; depends=[]; }; QCSIS = derive2 { name="QCSIS"; version="0.1"; sha256="0ibh3060jxf426svdfxiryvfhr8pwk991xs653d50ip4f9290y3a"; depends=[]; }; + QCSimulator = derive2 { name="QCSimulator"; version="0.0.1"; sha256="1ff7xagnzibhrwrmkqyky4ik3kx7rrlajrs1ypm210sl1d73jwvs"; depends=[ggplot2]; }; + QFASA = derive2 { name="QFASA"; version="1.0.2"; sha256="1gfclbalcfcfmb8bq7rp8kpnaqblai9y7n7n7zh4a3qmia5vrz2b"; depends=[Rsolnp]; }; QFRM = derive2 { name="QFRM"; version="1.0.1"; sha256="1k79sq9il4326q7ivwdwlzw7drjv4pwqra3fr8kyyqcpmxh9296h"; depends=[]; }; - QICD = derive2 { name="QICD"; version="1.0.1"; sha256="136f7qv69x0a5bz5pa1jfawn7vikd90qv3fk8pjga9azpmfjj2wn"; depends=[]; }; - QPot = derive2 { name="QPot"; version="1.0"; sha256="1dw2hzl6hif9g5kn37zyvd1gglqg67ki6ii42rl4vr5p3ar4f8pb"; depends=[MASS]; }; + QGglmm = derive2 { name="QGglmm"; version="0.5.1"; sha256="1112w9dwbr9smxa869w4833iw1vclscr1zbjn2f0xklnpn3nb40d"; depends=[mvtnorm R2Cuba]; }; + QICD = derive2 { name="QICD"; version="1.1.1"; sha256="0mg17w62yzgslifbc08vglsxwiczicgzilczidpjwlcrg3lq8jjc"; depends=[]; }; + QNB = derive2 { name="QNB"; version="1.1.7"; sha256="1xakzwsaf5297nxx5a193ji0dn30rw3yly4rhdjqabgrh3fgzv92"; depends=[locfit]; }; + QPot = derive2 { name="QPot"; version="1.1"; sha256="1ivkk5wdd1lp6v4hwmpr9g230kd7zgmj0vnv5fw0svwpb8zzz14x"; depends=[MASS]; }; + QQperm = derive2 { name="QQperm"; version="1.0.1"; sha256="06xhv54zgnx8i22j23a0dqxhh7my416idpkkwq93qd1rdzgamzc8"; depends=[]; }; + QRAGadget = derive2 { name="QRAGadget"; version="0.1.0"; sha256="0vmhbpfbbpbcs6s9zjam893yl54spbx4x4698c504g96hcc19kkp"; depends=[htmlwidgets leaflet magrittr miniUI raster scales shiny sp]; }; QRM = derive2 { name="QRM"; version="0.4-13"; sha256="0zxhm1bdbs4jizd909vw9yjdn484vmcrwcmpk3a7gr4142q9kdjh"; depends=[gsl Matrix mgcv mvtnorm numDeriv Rcpp timeDate timeSeries]; }; + QRank = derive2 { name="QRank"; version="1.0"; sha256="1f924r5bf5vjfl12hk1n5m3f94g30f6vmvzq2bn8295dflyndck0"; depends=[quantreg]; }; + QRegVCM = derive2 { name="QRegVCM"; version="1.0"; sha256="15fgmgwp9b4bjk46c3myfvq7ipl0qyfqslmf4ha184vi7s600ymj"; depends=[quantreg SparseM truncSP]; }; QSARdata = derive2 { name="QSARdata"; version="1.3"; sha256="0dhldnh0jzzb4assycc0l14s45ymvha48w04jbnr34lrwgr9krh4"; depends=[]; }; QTLRel = derive2 { name="QTLRel"; version="0.2-15"; sha256="15wli0mpcmp7vc4jwp393w0qfm5g5n8dj724j38s711ir98w660b"; depends=[gdata lattice]; }; QUIC = derive2 { name="QUIC"; version="1.1"; sha256="021bp9xbaih60qmss015ycblbv6d1dvb1z89y93zpqqnc2qhpv3c"; depends=[]; }; - QZ = derive2 { name="QZ"; version="0.1-4"; sha256="1k657i1rf6ayavn0lgfvlh8am3kzypgb1jhf2by147gv103izkrz"; depends=[]; }; + QVM = derive2 { name="QVM"; version="0.1.1"; sha256="0dnr4h4084n505vrxfrx3czrkqdbna8s4fxpwr5czfilbfbxhpar"; depends=[gWidgets IMPACT ltm multilevel mvtnorm nlme pander psych]; }; + QZ = derive2 { name="QZ"; version="0.1-5"; sha256="1z531yhlmm7a4m63p84q9nsnsrsiwfqrq505xg6crfygkb5kircc"; depends=[]; }; QoLR = derive2 { name="QoLR"; version="1.0.2"; sha256="1vvs5a4yl1isy0kqxzr2kcfg3y6bg3n2gsy7a2qgch92vjffd18a"; depends=[survival zoo]; }; - Qtools = derive2 { name="Qtools"; version="1.0"; sha256="12ifrk0g63hmfwq17sl25bz2m256jzp6n3lycsm2izm7rc0rv2c8"; depends=[boot MASS mice quantreg]; }; + Qtools = derive2 { name="Qtools"; version="1.2"; sha256="0432ip73aldblq3yyig8d47a56j12fs30fpz8sxvfj186ssawych"; depends=[boot MASS mice quantreg]; }; QuACN = derive2 { name="QuACN"; version="1.8.0"; sha256="1597blp8gqc5djvbgpfzi8wamvy0x50wh5amxj9cy99qa0jlglxi"; depends=[combinat graph igraph RBGL]; }; QualInt = derive2 { name="QualInt"; version="1.0.0"; sha256="1ms96m3nz54848gm9kdcydnk5kn2i8p1rgl2dwn7cqcqblfvsr4j"; depends=[ggplot2 survival]; }; - Quandl = derive2 { name="Quandl"; version="2.7.0"; sha256="15j8wgk067ixmcp70k7fi6wnyl7mz26ljdgrcgy6dwgfng6286h8"; depends=[httr jsonlite xts zoo]; }; + Quandl = derive2 { name="Quandl"; version="2.8.0"; sha256="0n1c4343ki8nia7qrq2m9zb7b05qr3yjwvk1ji7m44sa613w6y5l"; depends=[httr jsonlite xts zoo]; }; QuantPsyc = derive2 { name="QuantPsyc"; version="1.5"; sha256="1i9bh88r8zxndzjqsj14qw64gnvm5a9kvhjhzk3qsrvl3qzjgh93"; depends=[boot MASS]; }; + QuantTools = derive2 { name="QuantTools"; version="0.5.3"; sha256="01q71n9q9fqg6yn8mxnmd3j0mwp7ryxrkfw5cvpjwd1i9ld5d7jd"; depends=[data_table fasttime Rcpp RCurl readxl]; }; QuantifQuantile = derive2 { name="QuantifQuantile"; version="2.2"; sha256="01bdz8a6nhjil6n2z62x5g41v3d6md5v16g0ladsl5zc8raivqdq"; depends=[rgl]; }; - QuantumClone = derive2 { name="QuantumClone"; version="0.15.11"; sha256="1aaikqjcgbwz8wwi89b8aj6r0vzz2haj9wlv0ik1xbhsjlyvvcyz"; depends=[doParallel foreach fpc gridExtra rgl]; }; + QuantileGradeR = derive2 { name="QuantileGradeR"; version="0.1.1"; sha256="1zwc6bg636gk8zll7wpznd3pzl611hcj2fmzp8b9505rra13p0g2"; depends=[]; }; + QuantumClone = derive2 { name="QuantumClone"; version="0.16.8.19"; sha256="019rhpvc4by3pizy3i6sw04230hzhmq79mkhjin3777mn9gdnzfm"; depends=[doParallel foreach fpc ggplot2 gridExtra optimx]; }; QuasiSeq = derive2 { name="QuasiSeq"; version="1.0-8"; sha256="113pxmvwwn331g5dcv2zwsvvi5jgc1v41f38sw9gms06i8x3a7q6"; depends=[edgeR mgcv pracma]; }; Quor = derive2 { name="Quor"; version="0.1"; sha256="1ncl4pj472m881fqndcm6jzn4jkwbnzpc639c9vy5mxa4z569i1g"; depends=[combinat]; }; R_cache = derive2 { name="R.cache"; version="0.12.0"; sha256="006x52w9r8phw5hgqmyp0bz8z42vn8p5yibibnzi1sfa1xlw8iyx"; depends=[digest R_methodsS3 R_oo R_utils]; }; - R_devices = derive2 { name="R.devices"; version="2.14.0"; sha256="1i40033w15q1nazm9ma0gfixb37mdy76yhcssgvaah1dx6p51xb4"; depends=[base64enc R_methodsS3 R_oo R_utils]; }; + R_devices = derive2 { name="R.devices"; version="2.15.1"; sha256="09gmzb87n1ybqwyp4jdpih3w3s7nqkr4hd1qhcqr57kp2pj9jp9x"; depends=[base64enc R_methodsS3 R_oo R_utils]; }; R_filesets = derive2 { name="R.filesets"; version="2.10.0"; sha256="0wdqxskmamqygvxh9jmvkhkgm906yrqci6vivczr9la0j4zwnn0b"; depends=[digest future listenv R_cache R_methodsS3 R_oo R_utils]; }; R_huge = derive2 { name="R.huge"; version="0.9.0"; sha256="13p558qalv60pgr24nsm6mi92ryj65rsbqa6pgdwy0snjqx12bgi"; depends=[R_methodsS3 R_oo R_utils]; }; - R_matlab = derive2 { name="R.matlab"; version="3.5.0"; sha256="1vpdv6ixcfl933r23l6v858ncs1x6gqsmr9nxjjsimx7q56mw6p9"; depends=[R_methodsS3 R_oo R_utils]; }; + R_matlab = derive2 { name="R.matlab"; version="3.6.1"; sha256="013qi3iikikgib23cqg74vpp2ymsbw1zd6zny7m1km2js6gmfchh"; depends=[R_methodsS3 R_oo R_utils]; }; R_methodsS3 = derive2 { name="R.methodsS3"; version="1.7.1"; sha256="11z6v2i7jl647wxi9p5z66yvfnnqv6s7fxqmz7w2gkb6j8wl1f24"; depends=[]; }; - R_oo = derive2 { name="R.oo"; version="1.20.0"; sha256="1l1x4r69mdchjyi6sq52p580fz3b3bqv6dpn1706y9n4vq47qx24"; depends=[R_methodsS3]; }; - R_rsp = derive2 { name="R.rsp"; version="0.21.0"; sha256="0snc6ps75s3ci6sy8mil1wg2i9xmlr1ygh9n244y1brdvp43dfsw"; depends=[R_cache R_methodsS3 R_oo R_utils]; }; - R_utils = derive2 { name="R.utils"; version="2.2.0"; sha256="1340g3agi4w5ab0kkc85rnfy6q03f13x3i9c58vn2jaaq5lmvy90"; depends=[R_methodsS3 R_oo]; }; + R_oo = derive2 { name="R.oo"; version="1.21.0"; sha256="0723gxjazgqq7v3lwnl7axw3brzcnizvhbd71ijkkv8mz31fwp34"; depends=[R_methodsS3]; }; + R_rsp = derive2 { name="R.rsp"; version="0.40.0"; sha256="1hz5fnxz30m3cc7x7ha1swx4pn8c2244z6ka6v9m3l5lpdgc1367"; depends=[R_cache R_methodsS3 R_oo R_utils]; }; + R_utils = derive2 { name="R.utils"; version="2.5.0"; sha256="17q3w5dlly5xl2srrzsmf9s7vs5d576vqbcs6sr2p5x4qvqa1q8s"; depends=[R_methodsS3 R_oo]; }; R0 = derive2 { name="R0"; version="1.2-6"; sha256="1yvcgchxlj7hkgqkw6g8pxnracxkld1grgykkcr6wbhminbylqv8"; depends=[MASS]; }; R1magic = derive2 { name="R1magic"; version="0.3.2"; sha256="1xfldr5y7pfdi6qljjvckknsv2wi9rnzwmqxkpgnyc96md2fvwjr"; depends=[]; }; - R2BayesX = derive2 { name="R2BayesX"; version="1.0-0"; sha256="1p60n14gaqciskzah5haskflpms1g5lh4n57653yysa7fvmfgdhw"; depends=[BayesXsrc colorspace mgcv]; }; + R2BayesX = derive2 { name="R2BayesX"; version="1.1-0"; sha256="043hrznc16j6mkr3h9vjvi9yn6xn497xz5pjp53ks48pzz54jp9p"; depends=[BayesXsrc colorspace mgcv]; }; R2Cuba = derive2 { name="R2Cuba"; version="1.1-0"; sha256="1zmlsambajzxkc9dawlqb0png8s502hwblq0vyhqgc08yf29b43w"; depends=[]; }; R2G2 = derive2 { name="R2G2"; version="1.0-2"; sha256="05d5vybvsi4pyr099916nk1l8sqszs9gaj2vhsx1jxxks8981na7"; depends=[]; }; R2GUESS = derive2 { name="R2GUESS"; version="1.7"; sha256="07w54r5r9v7pa8aklmwbwdcc57j3a3b46b1a7mwmzcl11mcfwdph"; depends=[fields MCMCpack mixOmics mvtnorm snowfall]; }; - R2HTML = derive2 { name="R2HTML"; version="2.3.1"; sha256="01mycvmz4xd1729kkb8nv5cl30v3qy3k4fmrlr2m1112hf5cmp59"; depends=[]; }; - R2MLwiN = derive2 { name="R2MLwiN"; version="0.8-1"; sha256="0gkp5jvvbf9rppxirs1s7vr5nbfkrlykaph3lv20xq8cc8nz9zzx"; depends=[coda digest foreign lattice Matrix rbugs]; }; - R2OpenBUGS = derive2 { name="R2OpenBUGS"; version="3.2-3.1"; sha256="1nnyfhpqgx6wd4n039c4d42png80b2xcwalyj08bmq0cgl32cjgk"; depends=[boot coda]; }; + R2HTML = derive2 { name="R2HTML"; version="2.3.2"; sha256="00kxny7hajs9r2kw63qk7d03ggdxx2j1g8vbrmzp806y8aczvik9"; depends=[]; }; + R2MLwiN = derive2 { name="R2MLwiN"; version="0.8-3"; sha256="1xxwj59f6mfl48jmwn8n5i6b86kkw8kaxpvirkh74gqan861hrpb"; depends=[coda digest doParallel foreach foreign lattice Matrix memisc rbugs texreg]; }; + R2OpenBUGS = derive2 { name="R2OpenBUGS"; version="3.2-3.2"; sha256="1cxr93g0fkdv3lqdh63l2gcp7qn3q42pm1r6nzf35550k9ahkhnv"; depends=[boot coda]; }; R2STATS = derive2 { name="R2STATS"; version="0.68-38"; sha256="1v8mvkvs4fjch0dpjidr51jk6ynnw82zhhylyccyrad9f775j2if"; depends=[cairoDevice gWidgets gWidgetsRGtk2 lattice latticeExtra lme4 MASS Matrix proto RGtk2Extras statmod]; }; R2SWF = derive2 { name="R2SWF"; version="0.9-1"; sha256="0xhq4dyi1mj4n38zylgi6d17d5wp402wm3kic05vgssg4pyfda2d"; depends=[sysfonts]; }; R2WinBUGS = derive2 { name="R2WinBUGS"; version="2.1-21"; sha256="0k8k214x712vjj2k1am4zzf6scccs3b98ysiz4lwxpzm818wp1ps"; depends=[boot coda]; }; - R2admb = derive2 { name="R2admb"; version="0.7.13"; sha256="0sjli498pz1vk5wmw65mca08mramwhzlfli2aih15xj7qzvp0nky"; depends=[coda lattice]; }; + R2admb = derive2 { name="R2admb"; version="0.7.15"; sha256="1v01fbcc7hx6mswn4gkwpm6k171956wk51ls6sgca1i6ia6ckmli"; depends=[coda lattice]; }; R2jags = derive2 { name="R2jags"; version="0.5-7"; sha256="0h1d27cddyacx5m5f23rlki97iwni7clffmb2k7a4bznlnjhn50a"; depends=[abind coda R2WinBUGS rjags]; }; R330 = derive2 { name="R330"; version="1.0"; sha256="01sprsg7kph62abhymm8zfqr9bd6dhihrfxzgr4pzi5wj3h80bjm"; depends=[lattice leaps rgl s20x]; }; R4CouchDB = derive2 { name="R4CouchDB"; version="0.7.1"; sha256="08s999m1kfjzabng41d5fpkag7nrdbricnw7m4jvj1ssqfnil2hj"; depends=[bitops RCurl RJSONIO]; }; R4dfp = derive2 { name="R4dfp"; version="0.2-4"; sha256="02crzjphlq4hi2crh9lh8l0acmc1rgb3wr1x8sn56cwhq4xzqzcb"; depends=[]; }; - R6 = derive2 { name="R6"; version="2.1.2"; sha256="0yad91i9p4r8bbz6nq8zny39y767n9an7ak5p275ynx8km6v3yqv"; depends=[]; }; + R6 = derive2 { name="R6"; version="2.2.0"; sha256="1ir51pb0y6yj05qaxsflk4a6hv8n73cwlb0qajcskbrz632dsyvx"; depends=[]; }; + R6Frame = derive2 { name="R6Frame"; version="0.1.0"; sha256="0ib0van2qk0p89qmii8naj1jx56i6j7srvydzm41pyq2xdg0bmga"; depends=[data_table lazyeval R6]; }; + RAC = derive2 { name="RAC"; version="1.0.1"; sha256="1idy7kik0gfzd404xs8g2mg5ycinld1wp1a9lxd2wqmyc8ghpd0y"; depends=[matrixStats plotrix rstudioapi]; }; RAD = derive2 { name="RAD"; version="0.3"; sha256="0nmgsaykxavq2bskq5x0jvsxzsf4w2gqc0z80a59376li4vs9lpj"; depends=[MASS mvtnorm]; }; - RADami = derive2 { name="RADami"; version="1.0-3"; sha256="0rg07dsh2rlldajcj0gq5sgsl1i3qa28bsrmq88xcljg5hnr4iqn"; depends=[ape Biostrings geiger phangorn]; }; + RADami = derive2 { name="RADami"; version="1.1-2"; sha256="1k4g58r64i19j8wj3d202283bnwaxf19l7ckiz29dlw4zidx6mvz"; depends=[ape Biostrings geiger hierfstat IRanges phangorn]; }; RADanalysis = derive2 { name="RADanalysis"; version="0.5.5"; sha256="1py07p24i1pky8wwyy8ajmkg6h2n7nbpxp1w6lrkiyl0p2kgjm20"; depends=[scales sfsmisc]; }; RAHRS = derive2 { name="RAHRS"; version="1.0.2"; sha256="0s7vkmyc3yh62m2xbsvajgvi9xdw5x4irnp7rcllhqa7z9nj50c9"; depends=[pracma RSpincalc]; }; RAM = derive2 { name="RAM"; version="1.2.1.3"; sha256="1p6rqqbp5q3pqy9m6npml52nkfh8pd4kc245kb22qjslbvl3rrkn"; depends=[ade4 ape data_table FD ggmap ggplot2 gplots gridExtra labdsv lattice MASS permute phangorn phytools plyr RColorBrewer reshape reshape2 RgoogleMaps scales vegan VennDiagram]; }; - RAMP = derive2 { name="RAMP"; version="1.0"; sha256="18cz8gvb49j1hic71dzfcl17hz5gjdcabqvq84yr1h7iqkrq95cq"; depends=[]; }; - RAMpath = derive2 { name="RAMpath"; version="0.3.8"; sha256="1p1l6iirb314n5246kyyz0r3ja4v05xb5a6aq9k26wsb5m42x85k"; depends=[ellipse lavaan]; }; + RAMP = derive2 { name="RAMP"; version="1.9"; sha256="0fy74cj1hjlwsdpayv0mkh7cn829bd1c7z9mgng304vh5ga02nh2"; depends=[]; }; + RAMpath = derive2 { name="RAMpath"; version="0.4"; sha256="0blixfmgiq22hd356hrp4vbhfkkgh0a58143nhirjx3sav9pxc1v"; depends=[ellipse lavaan MASS]; }; RANKS = derive2 { name="RANKS"; version="1.0"; sha256="1lvaya9jlqrr9klqznw4fz5h5x0sw191ci74hpymb4gzhhxcbp27"; depends=[graph limma NetPreProc PerfMeas RBGL]; }; RANN = derive2 { name="RANN"; version="2.5"; sha256="007cgqg9bybg2zlljbv5m6cmlm3r6i251018rpgjcn0xnm9sjsj7"; depends=[]; }; RANN_L1 = derive2 { name="RANN.L1"; version="2.5"; sha256="0sjf92hdw9jczvq1wl5syckhvik7wv0k9vrrgw4nnnsabc25v9pf"; depends=[]; }; RAP = derive2 { name="RAP"; version="1.1"; sha256="18dclijs72p6gxawpg8hk7n512ah4by5jfg2jnrp8mz79ajmdgir"; depends=[]; }; RAPIDR = derive2 { name="RAPIDR"; version="0.1.1"; sha256="14cnw4jjs5anb55zlg1yj6qc9yr51rsamigq2q7h8ypj2ggnna1d"; depends=[Biostrings data_table GenomicAlignments GenomicRanges PropCIs Rsamtools]; }; - RAdwords = derive2 { name="RAdwords"; version="0.1.6"; sha256="0rrkw3s0r7qp87ikphi8i8dq5j46h5708h9phqi3hc0qkmkld8i8"; depends=[RCurl rjson]; }; + RAdwords = derive2 { name="RAdwords"; version="0.1.11"; sha256="069ik7irl68chwpfdpp06ng2w272kr0cx7fjd1c6zz4nrsw8zxrn"; depends=[RCurl rjson]; }; RApiSerialize = derive2 { name="RApiSerialize"; version="0.1.0"; sha256="0gm2j8kh40imhncwwx1sx9kmraaxcxycvgwls53lcyy2ap344k9j"; depends=[]; }; - RAppArmor = derive2 { name="RAppArmor"; version="2.0.1"; sha256="19545bblzplnqbkf6p23ap6b51ma8n30ivxrx57p1rmnnnj55vdz"; depends=[]; }; + RAppArmor = derive2 { name="RAppArmor"; version="2.0.2"; sha256="18zmqqh4rnbnaiwi60jfp4xi8fp63ydr3jk9w4ijmy6s4hkpp75g"; depends=[]; }; RArcInfo = derive2 { name="RArcInfo"; version="0.4-12"; sha256="1j1c27g2gmnxwslff4l0zivi48qxvpshmi7s9wd21cf5id0y4za4"; depends=[RColorBrewer]; }; RAtmosphere = derive2 { name="RAtmosphere"; version="1.1"; sha256="0mk43bq28hlrjwaycsxca458k8xf00q58czgc17d8yx3kz17a5i0"; depends=[]; }; - RBPcurve = derive2 { name="RBPcurve"; version="1.0-33"; sha256="0n49qiam8ydlhhqk2f1h0rqdsl4ivx2vmz9n11kf4yfrq06a02a7"; depends=[BBmisc checkmate mlr shape TeachingDemos]; }; + RBMRB = derive2 { name="RBMRB"; version="2.0.2"; sha256="0znkw5n123xhn902nyv1p0bpm0djyscsyqdab3bpps0n35mfxlq5"; depends=[data_table ggplot2 httr plotly rjson]; }; + RBPcurve = derive2 { name="RBPcurve"; version="1.1"; sha256="0g243h4zpjigayf7kryfpdvshycaxz12ifqilyk3ylz91kk61nmb"; depends=[BBmisc checkmate mlr shape TeachingDemos]; }; RBerkeley = derive2 { name="RBerkeley"; version="0.7-5"; sha256="049qvlpqwcaj82fdl815c0b2il7jbs6karibqpkq0fa3hq0q4hzz"; depends=[]; }; RCA = derive2 { name="RCA"; version="2.0"; sha256="0pidb5czrf0dc3ywy6cwm5akgsc62pvf94kfyxibzmd1favykx1h"; depends=[gplots igraph]; }; - RCALI = derive2 { name="RCALI"; version="0.2-15"; sha256="0w9807dyjghqy1rnv2c0k4kdjlwxzg5fk5r3rsqrmzjj4r8x9g9w"; depends=[splancs]; }; + RCALI = derive2 { name="RCALI"; version="0.2-17"; sha256="1bic7dwxkvgxl3a26glxm6h6gmq4xad70dbrnrnb2d6n5v1dnniw"; depends=[splancs]; }; RCEIM = derive2 { name="RCEIM"; version="0.2"; sha256="0l3lfx3zqxf310rhvjkn977xchxzi7cbzij3ks0nqlx55x5ica9w"; depends=[]; }; - RCMIP5 = derive2 { name="RCMIP5"; version="1.1"; sha256="1aqcwxh2p4z7wn4p224xdiaharbr51rj51aa760rirs5s1ra7f6q"; depends=[abind digest dplyr reshape2]; }; - RCPmod = derive2 { name="RCPmod"; version="1.4"; sha256="1psn1w8ws0n96jqvd98l0wl0l46w0691c5vm9aarql2pqnc73lw9"; depends=[gtools numDeriv]; }; + RCMIP5 = derive2 { name="RCMIP5"; version="1.2.0"; sha256="0bwp1ln0y48g2d0bj9b47y0rlwffzv0pi6gjfzv4sg5anhswc9x7"; depends=[abind assertthat digest dplyr Matrix]; }; + RCPmod = derive2 { name="RCPmod"; version="2.154"; sha256="0x4jk5xv3z3nyi99rv9fh2akhyk4s1736fzsxynqxfm6br3k8mc6"; depends=[fishMod glmnet gtools MASS]; }; RCassandra = derive2 { name="RCassandra"; version="0.1-3"; sha256="0xa241s81cyw6lfjb522f2mlyrd0gav9yz3z5jab9hpdpgg9ri38"; depends=[]; }; - RCircos = derive2 { name="RCircos"; version="1.1.3"; sha256="1kskjli7q4cmppm7cm5w2d8ad7h3crcpay1iayas5wkc03fga4gw"; depends=[]; }; + RChronoModel = derive2 { name="RChronoModel"; version="0.4"; sha256="0haqxwic160pnnm90bgchzxmsdwmi6m97i9xrh8js8bp2xn76l5f"; depends=[hdrcde]; }; + RCircos = derive2 { name="RCircos"; version="1.2.0"; sha256="0jj4jj9qnj7pils99hzw9yx5bwi182q4afdsqh7w7d9kzhp6xl3z"; depends=[]; }; RClimMAWGEN = derive2 { name="RClimMAWGEN"; version="1.1"; sha256="0icy560llfd10mxlq0xmc6lbg6a030za9sygw1rpz8sk5j0lvb84"; depends=[climdex_pcic RMAWGEN]; }; - RClone = derive2 { name="RClone"; version="1.0"; sha256="0rbnac1xdpj6g8sq0dd6ja6mi5gl3nxjz3arnzmdwwh3qaqdx91i"; depends=[]; }; + RClone = derive2 { name="RClone"; version="1.0.2"; sha256="1kv02acj0mk5102wvmdnxnkb7qig3jb9amcs4k2r26fpa4hyfa7f"; depends=[]; }; RColorBrewer = derive2 { name="RColorBrewer"; version="1.1-2"; sha256="1pfcl8z1pnsssfaaz9dvdckyfnnc6rcq56dhislbf571hhg7isgk"; depends=[]; }; RConics = derive2 { name="RConics"; version="1.0"; sha256="1lwr7hi1102gm8fi9k5ra24s0rjmnkccihhqn3byckqx6y8kq7ds"; depends=[]; }; - RCriteo = derive2 { name="RCriteo"; version="1.0.1"; sha256="1wlsp9idywgkcr2v68yj8gabyxd4ss6vzqr4z2id7fgvyqk8fyy4"; depends=[httr plyr RCurl XML]; }; + RCriteo = derive2 { name="RCriteo"; version="1.0.2"; sha256="1vyhnblw9zr5h6c25lf76p9vn95k8vr0hpq1sjkccdwl9yvsyhfy"; depends=[httr plyr RCurl XML]; }; RCryptsy = derive2 { name="RCryptsy"; version="0.4"; sha256="01rz9wz5y1k77mjw4zs0jng3k4zwqda32m5xvw6kx7vkgzfas6q0"; depends=[RCurl RJSONIO]; }; RCurl = derive2 { name="RCurl"; version="1.95-4.8"; sha256="1yrbm8sypizy18qxkl6534fk2gf2ijxhahw6qldk9v5v3cjl68p7"; depends=[bitops]; }; RDIDQ = derive2 { name="RDIDQ"; version="1.0"; sha256="09gincmxv20srh4h82ld1ifwncaibic9b30i56zhy0w35353pxm2"; depends=[]; }; - RDML = derive2 { name="RDML"; version="0.9-1"; sha256="0ir8qp3k326gxy5f0hy144zi8xcgsk6svahz7lr5pjfj05czmxxm"; depends=[assertthat dplyr plyr R6 rlist tidyr XML]; }; - RDS = derive2 { name="RDS"; version="0.7-5"; sha256="13zdan1riq5yzyixywr69svz42i5rp9n3fsz8zwmp2d64y8wsr3j"; depends=[ggplot2 gridExtra igraph reshape2 scales]; }; + RDML = derive2 { name="RDML"; version="0.9-5"; sha256="08q1ixwnxx4j2nwdynswbdy6jw2r97c5a0zlwhaxr888c7hcv6ff"; depends=[checkmate data_table lubridate pipeR R6 readxl rlist stringr xml2]; }; + RDS = derive2 { name="RDS"; version="0.7-8"; sha256="0lxnb6zd5lphs9d42pfdzx607w7iz1mpj3z8pb2ri3s4h011g1vn"; depends=[ggplot2 gridExtra igraph reshape2 scales]; }; RDSTK = derive2 { name="RDSTK"; version="1.1"; sha256="07vfhsyah8vpvgfxfnmp5py1pxf4vvfzy8jk7zp1x2gl6dz2g7hq"; depends=[plyr RCurl rjson]; }; + RDStreeboot = derive2 { name="RDStreeboot"; version="1.0"; sha256="10ry8rna450j389cplvyvgwljxa8lli7licwdin64b1kyzy2cdn7"; depends=[]; }; RDataCanvas = derive2 { name="RDataCanvas"; version="0.1"; sha256="1aw19lmdphxwva5cs3f4fb8hllirzfkk48nqdgrarz32l11y5z5j"; depends=[jsonlite]; }; RDieHarder = derive2 { name="RDieHarder"; version="0.1.3"; sha256="0wls7b0qfbi6hsq9xdywi4mdhim5b6mrzhvyrm9dxp9z1k7imz6m"; depends=[]; }; - RDota = derive2 { name="RDota"; version="1.2"; sha256="1r56s4ii37szmdwgbnlw2g9576kjvyc79nvnfrsgr5mys62pbrzs"; depends=[XML]; }; - REBayes = derive2 { name="REBayes"; version="0.62"; sha256="03fzmj4illah6xa4j4qh8srzxlrda8i4j71sd3269rs6lf2n9bw7"; depends=[Matrix reliaR Rmosek]; }; - RECA = derive2 { name="RECA"; version="1.1"; sha256="1wgcd53yy4xsi7i674n4255qvvv6988r43q7n7pjqrimp04g1qd0"; depends=[]; }; - REDCapR = derive2 { name="REDCapR"; version="0.9.3"; sha256="0il1b1sc05kigl8937s853a73k54xdr16sr4g8c11qyv54iy8d9a"; depends=[httr plyr]; }; + RDocumentation = derive2 { name="RDocumentation"; version="0.8.0"; sha256="0k733c6b2ggwqry13ynnm9bmnrlf1sszya061wx2w52d3x378r2g"; depends=[githubinstall httr proto rjson]; }; + RDota2 = derive2 { name="RDota2"; version="0.1.6"; sha256="0fjsgg4dmzw2xwrf8jxq0f2d7f78bf67bl3ms5qcjk9kskfnymag"; depends=[httr jsonlite]; }; + REAT = derive2 { name="REAT"; version="1.3.0"; sha256="1vm4bxvvwlx1qmnss4zkbh7i29yy95macd79hrf78c7sfc8zkiqn"; depends=[]; }; + REBayes = derive2 { name="REBayes"; version="0.73"; sha256="0fv9ij71r36s6qsd0jrzcdirskvmr1bmxp1gbfvy77qm4dzxg00g"; depends=[Matrix reliaR Rmosek]; }; + RECA = derive2 { name="RECA"; version="1.3"; sha256="1v9ff2inxwpq91pjl6g9bpl9nmlyryp030g6abydikkhkcq3n74b"; depends=[]; }; + REDCapR = derive2 { name="REDCapR"; version="0.9.7"; sha256="0b2dbmmjd4bmr48inv1gwc9353p4rhf8891mb5rs4cdqsl13dic4"; depends=[data_table dplyr httr readr]; }; REEMtree = derive2 { name="REEMtree"; version="0.90.3"; sha256="01sp36p12ky8vgsz6aik80w4abs70idr9sn4627lf94r92wwwsbc"; depends=[nlme rpart]; }; REGENT = derive2 { name="REGENT"; version="1.0.6"; sha256="1f2sjqkhw3rbmwbcmx7l7imj696kblisi8y3fz77xygbcbxa6rmq"; depends=[]; }; - REPPlab = derive2 { name="REPPlab"; version="0.9.3"; sha256="1ildcmqpjxbmrjjvgq0wyg8gj9a8fl54fyxbsbkfxfg6lyfknm2g"; depends=[lattice LDRTools rJava]; }; + REPPlab = derive2 { name="REPPlab"; version="0.9.4"; sha256="1pf8zrjdzziyq2lw31p1ij7cn4j7pf659ygxv8wpfnmcmpaqbc45"; depends=[lattice LDRTools rJava]; }; + REPTILE = derive2 { name="REPTILE"; version="1.0"; sha256="11swy4jrmmb0xjjxm1wyxd628fxxcqnialvijdrjwjpdbvraz4gq"; depends=[doParallel flux foreach optparse randomForest]; }; REQS = derive2 { name="REQS"; version="0.8-12"; sha256="049glqhc8h8gf425kmj92jv70917dsigpm37diby0c6hb4jrg8ka"; depends=[gtools]; }; + REREFACT = derive2 { name="REREFACT"; version="1.0"; sha256="0nggva4qfqlcs58df3sgiigw0z75l5kg8c1yh0k5qsvjnhiq19vn"; depends=[combinat gdata Matrix psych]; }; RESS = derive2 { name="RESS"; version="1.3"; sha256="1vddmifp47ia0sk35rnjpvw6gr9ygygafqczq268h17i1qs6ar22"; depends=[]; }; REST = derive2 { name="REST"; version="1.0.1"; sha256="16v89z7p9qkg7bsypf9vkrnbmb2n7gw3fqnfzbyxwj496wzxdv1x"; depends=[Rcmdr]; }; REdaS = derive2 { name="REdaS"; version="0.9.3"; sha256="09mmcvzgsxvrcq7sq3pw81pxgb1493p8lx8p5hhz8i42vshza6pn"; depends=[]; }; - REndo = derive2 { name="REndo"; version="1.0"; sha256="0mla336jj1c17b2jvi4a10pgk5zpdhiif5f1c70pdhzvisiagmng"; depends=[AER e1071 mvtnorm optimx]; }; + REndo = derive2 { name="REndo"; version="1.1"; sha256="1n168xxjxj9353chdgsj88as0dj7ylm207xk75rbfzv7bdi7rlj9"; depends=[AER corpcor e1071 gmm lme4 lmtest Matrix mvtnorm optimx plyr sandwich]; }; RFGLS = derive2 { name="RFGLS"; version="1.1"; sha256="13ggxj74h5b2hfhjyc50ndxznkvlg18j80m78hkzwh25d3948fsk"; depends=[bdsmatrix Matrix]; }; RFLPtools = derive2 { name="RFLPtools"; version="1.6"; sha256="1hl2crg7jl266zac41xvx151h7kl52346wnlvd8hba64s4s4apay"; depends=[RColorBrewer]; }; RFOC = derive2 { name="RFOC"; version="3.3-3"; sha256="101d7nf4zjni5kdk54w3afdaqnjzl7y90zygybkqpd0vi82q602b"; depends=[GEOmap MASS RPMG RSEIS splancs]; }; + RFc = derive2 { name="RFc"; version="0.1-2"; sha256="0zqnx9hbwp6j4y4r6mndgm95px07if93mpdmp3ls5kh4pnj2n6ff"; depends=[httr jsonlite sp]; }; RFgroove = derive2 { name="RFgroove"; version="1.1"; sha256="1ank7jvmn83w0xzylf7i0fjb60mbrzzydspksfzcy16rkl6f5dvb"; depends=[fda randomForest wmtsa]; }; RFinanceYJ = derive2 { name="RFinanceYJ"; version="0.3.1"; sha256="0qhmzsch7c2p0zckjkspsajzh8m10cf75ixjlgd0nj8rm41fngm3"; depends=[XML xts]; }; + RFinfer = derive2 { name="RFinfer"; version="0.2.0"; sha256="1cgdrg7gm8hdaaycipn8wjx7s4652jyy664n1my9qynmc56qib4n"; depends=[Matrix party pbapply randomForest]; }; RFmarkerDetector = derive2 { name="RFmarkerDetector"; version="1.0.1"; sha256="1zd0sbcji620pka5600ilj4bq9gzdnk5kf82qfd5k5dcx7q9x7rk"; depends=[AUCRF ggplot2 randomForest ROCR UsingR WilcoxCV]; }; - RForcecom = derive2 { name="RForcecom"; version="0.8"; sha256="1w3m6rdmycrjhigs4h9bqy5xqsjwkz2cb1idch397iwxrjzsx1ph"; depends=[httr plyr RCurl XML]; }; - RFormatter = derive2 { name="RFormatter"; version="0.1.0"; sha256="01izxfnwhpy4wgp8ry0xasjjd63071gk1962dl2wzjycgcsig5p5"; depends=[formatR]; }; + RForcecom = derive2 { name="RForcecom"; version="1.1"; sha256="1ch1pwpnqagzb9n4qbgr804bmnz819kp36r5a4zhijmq8xpv3qr2"; depends=[httr plyr RCurl XML]; }; + RFormatter = derive2 { name="RFormatter"; version="0.1.1"; sha256="0jmzdc2cl4vvffsyfwp493fiygh9xinhv970qxp1667rw8wlap8l"; depends=[formatR]; }; RFreak = derive2 { name="RFreak"; version="0.3-0"; sha256="1dmllxb6yjkfkn34f07j2g7w5m63b5d10lh9xsmxyfk23b8l3x0x"; depends=[rJava]; }; - RGA = derive2 { name="RGA"; version="0.4.1"; sha256="1zwkxm1xwgfdd5r4jkgzrfj4hgrdnzz8z0a75318fbpaw1cvaqwq"; depends=[httr jsonlite lubridate plyr]; }; - RGCCA = derive2 { name="RGCCA"; version="2.0"; sha256="0mcp51z5jkn7yxmspp5cvmmvq0cwh7hj66g7wjmxsi74dwxcinvg"; depends=[MASS]; }; - RGENERATE = derive2 { name="RGENERATE"; version="1.3"; sha256="16gkdwbigdsdvnplqhzs11kk4dhb2rlnf7vj6kbzxw9fb1b7818q"; depends=[RMAWGEN]; }; - RGENERATEPREC = derive2 { name="RGENERATEPREC"; version="1.0"; sha256="1f6y3i8r6a9cajbj127s0cd13ihbi8scgrsgizza1fjb7fg2g450"; depends=[blockmatrix copula Matrix RGENERATE RMAWGEN stringr]; }; + RGA = derive2 { name="RGA"; version="0.4.2"; sha256="0pjizgvrh0gbjlyxlb3v93nhigg8rpq3mziv1qlp6r0s5y7cmpi9"; depends=[httr jsonlite lubridate plyr]; }; + RGBM = derive2 { name="RGBM"; version="1.0-4"; sha256="0z4qkwmkwf3r9lpfk5dgrphzb493wqrl7mrh58hyiz09dsy224h1"; depends=[doParallel foreach plyr]; }; + RGCCA = derive2 { name="RGCCA"; version="2.1"; sha256="1xpni9aj37zhpjr6k6gc82dihmzjdxjqy5dyz7lcvscgbwvbw0vl"; depends=[MASS]; }; + RGENERATE = derive2 { name="RGENERATE"; version="1.3.5"; sha256="12dq04xpl06zhkzwqx3zy0bkpvb5phbdj2inxsyczf6d4dk209mb"; depends=[RMAWGEN]; }; + RGENERATEPREC = derive2 { name="RGENERATEPREC"; version="1.2"; sha256="1w28yfzk3ilbz1r9fsc76cigyrnzzhsfm3a81ff8g26za7cb8vjp"; depends=[blockmatrix copula Matrix RGENERATE RMAWGEN stringr]; }; RGIFT = derive2 { name="RGIFT"; version="0.1-5"; sha256="1745fs4bq0ss39fiwljspvrmnkgbbpc1fjvhvcrsmp2iizq12sgn"; depends=[]; }; RGenetics = derive2 { name="RGenetics"; version="0.1"; sha256="0x5sspd67hh08qm62whlnnd838m0np29q3bfzgwp6j85lhil3jrx"; depends=[]; }; RGoogleAnalytics = derive2 { name="RGoogleAnalytics"; version="0.1.1"; sha256="1049fyxl00izw92rm508p90asjp0agmv38b00yfbmasfzsp1r00s"; depends=[httr lubridate]; }; RGoogleAnalyticsPremium = derive2 { name="RGoogleAnalyticsPremium"; version="0.1.1"; sha256="0d22pdd5kvnrspikfb66ny07pgx96rvykr0zi78rwn6g1symdb4q"; depends=[httr jsonlite lubridate]; }; + RGoogleFit = derive2 { name="RGoogleFit"; version="0.2.0"; sha256="1yxp2dflq4hihn8mknjxhsrf3dy4dr4bs4qkzi2zxm2mh9mn0lsl"; depends=[bit64 httr jsonlite RCurl]; }; RGraphics = derive2 { name="RGraphics"; version="2.0-14"; sha256="0bv95g17pvpq3nji0akphdaznh9k85hf5z78qypxwfqr76brxd05"; depends=[ggplot2 lattice]; }; RGtk2 = derive2 { name="RGtk2"; version="2.20.31"; sha256="1ilnlmsk9fis61pc5bn9sf7z4b7vc7f0a0zcy77kk4bns6iqjvyp"; depends=[]; }; RGtk2Extras = derive2 { name="RGtk2Extras"; version="0.6.1"; sha256="19gjz2bk9dix06wrmlnq02yj1ly8pzhvr0riz9b08vbzlsv9gnk2"; depends=[RGtk2]; }; RH2 = derive2 { name="RH2"; version="0.2.3"; sha256="1qbxy600fc8k2xl70liggdgg03ga6a8yad001banqzdmh508wcxl"; depends=[chron rJava RJDBC]; }; - RHRV = derive2 { name="RHRV"; version="4.0"; sha256="16xmmmw8gsqalbqf59xwpkd2bkfwxrdx8bwdn875bizx7mn0bql7"; depends=[nonlinearTseries tkrplot waveslim]; }; + RHRV = derive2 { name="RHRV"; version="4.2.3"; sha256="09rcf9da04195myh4mwva3hqcd483k0wwcn84jgbkj8a5z1zxqc6"; depends=[lomb nonlinearTseries tkrplot waveslim]; }; RHT = derive2 { name="RHT"; version="1.0"; sha256="1gxf8nhj3y92h8al7l3fxa45wc568kb3cykrbdjlsy2zjacf7fcc"; depends=[]; }; - RI2by2 = derive2 { name="RI2by2"; version="1.2"; sha256="0387ncq1nhpz8521nwsjybsdpncm56nrwkz68apgihmrbjlmp6m7"; depends=[gtools]; }; + RI2by2 = derive2 { name="RI2by2"; version="1.3"; sha256="0smc0fb9anq5ih9zx2slfbqyx02njm0hc7g22gpfggskmxf2l509"; depends=[gtools Rcpp]; }; RIFS = derive2 { name="RIFS"; version="0.1-5"; sha256="0705dhirh7bhy2yf3b1mpk3m7lggg4pwy640lvaspwaxkd6zac5w"; depends=[]; }; - RISmed = derive2 { name="RISmed"; version="2.1.5"; sha256="03c2b6iqq147kwrpx6wh440y1p2sy5c4i3v2yph99326pzxbyw7q"; depends=[]; }; + RISmed = derive2 { name="RISmed"; version="2.1.6"; sha256="0gwdx2xg3n4n82cvhj61yvdlmd35ag85dglwfcwhbplk7zh4cjps"; depends=[]; }; RImageJROI = derive2 { name="RImageJROI"; version="0.1.1"; sha256="0a4sa60klbpl31qxxvjjbksdhvs3vwm9na1v7014v93fzxy6bjas"; depends=[spatstat]; }; RImagePalette = derive2 { name="RImagePalette"; version="0.1.1"; sha256="054w8xzsn330qg7piq6ajhji9na2swkkdis2567cy3q099npfl5v"; depends=[ggplot2]; }; RImpala = derive2 { name="RImpala"; version="0.1.6"; sha256="03f4cq4bcrydpy78ypir7smj7abrcfynz0zzlgwgc60vh7vl79lz"; depends=[rJava]; }; RInSp = derive2 { name="RInSp"; version="1.2"; sha256="0zg46qw44wx17ydcz592gl4k9qq08dycmsshxxqkjf92r3g3l6wm"; depends=[]; }; RInside = derive2 { name="RInside"; version="0.2.13"; sha256="0cfhljdai9kkw5m01mjaya0s02g4g1cy1g4i0qpjkhgqyihsh7dy"; depends=[Rcpp]; }; - RItools = derive2 { name="RItools"; version="0.1-13"; sha256="1j7gwn1n3dn3xp0c9rwdlmkkw8arjvf9nq0glwc273nnyh4wg72k"; depends=[abind SparseM svd xtable]; }; + RItools = derive2 { name="RItools"; version="0.1-15"; sha256="0f7g0w8bnbxryll48rnn7blgskgcdqqx9xv4fqmwcbkbasjz37va"; depends=[abind SparseM survival svd xtable]; }; RJDBC = derive2 { name="RJDBC"; version="0.2-5"; sha256="0cdqil9g4w5mfpwq85pdq4vpd662nmw4hr7qkq6510gk4l375ab2"; depends=[DBI rJava]; }; - RJSDMX = derive2 { name="RJSDMX"; version="1.5"; sha256="1dps81ni257j27dsfwpjz20r2q3q60myf29cdjphsmf7zwkrzpiz"; depends=[rJava zoo]; }; + RJSDMX = derive2 { name="RJSDMX"; version="1.6-2"; sha256="0015r71fh2ynwvq4lzdq1h59kvsr04h82anznwz5ixrc3vz3abzj"; depends=[rJava zoo]; }; RJSONIO = derive2 { name="RJSONIO"; version="1.3-0"; sha256="1dwgyiy19sixhy6yclqcaaxswbmpq7digyjjxhy1qv0wfsvk94qi"; depends=[]; }; RJaCGH = derive2 { name="RJaCGH"; version="2.0.4"; sha256="1a8nd0w73dvxpamzi2addwr6q3rxhnnpa1girnlwbd1j1dll0bz6"; depends=[]; }; RJafroc = derive2 { name="RJafroc"; version="0.1.1"; sha256="1630f8nmpid5pax8gqxych8bqf8a1avgrk7yqisk3lf1yx3h68rq"; depends=[ggplot2 shiny stringr xlsx]; }; RKEA = derive2 { name="RKEA"; version="0.0-6"; sha256="1dncplg83b4zznh1zh90wr8jv5259cy93imrry86c5kqdijmhrrp"; depends=[rJava RKEAjars tm]; }; RKEAjars = derive2 { name="RKEAjars"; version="5.0-1"; sha256="00bva6ksdnmwa0i2zvr36n40xp429c0sqyp20a8n3zsblawiralc"; depends=[rJava]; }; - RKEEL = derive2 { name="RKEEL"; version="1.1.6"; sha256="11yc31jswdzm5kr7j9b2cpzd9rhwkirfk02df7z5i8ry420jhm5y"; depends=[doParallel foreach gdata R6 RKEELdata RKEELjars XML]; }; - RKEELdata = derive2 { name="RKEELdata"; version="1.0.2"; sha256="0wnzsf5mgal5cqdclfs1z396h47a7ikkf5raby8508yrv19czv5l"; depends=[]; }; - RKEELjars = derive2 { name="RKEELjars"; version="1.0.11"; sha256="0kmdzvybj8jyiq95clc52jzrnmwk5ifanjjpz3bw4ypvqmj86xn2"; depends=[downloader]; }; + RKEEL = derive2 { name="RKEEL"; version="1.1.21"; sha256="0rcbw4wbp1dg4hqrg6dmim7d4bsaa1j3rdffhkyz3in8hv76i0lq"; depends=[arules doParallel foreach gdata Matrix pmml R6 rJava RKEELdata RKEELjars XML]; }; + RKEELdata = derive2 { name="RKEELdata"; version="1.0.3"; sha256="1imz5qsr04hkhblivax30jlvbvjxya6h0z9x7s0llgqssfxbawpy"; depends=[]; }; + RKEELjars = derive2 { name="RKEELjars"; version="1.0.15"; sha256="06wc4x6lhk9akaghqi5bfkfs3yxg29lbga074a5nwadiz2fbnmkv"; depends=[downloader]; }; RKlout = derive2 { name="RKlout"; version="1.0"; sha256="17mx099393b1m9dl3l5xjcpzmb9n3cpjghb90m9nidccxkhacmqf"; depends=[RCurl]; }; - RLRsim = derive2 { name="RLRsim"; version="3.1-2"; sha256="0wwcn9ch4bndrw5sizsd4cqaq1nvqgykx28dzp05r6wsabixnhxh"; depends=[lme4 mgcv nlme Rcpp]; }; + RLRsim = derive2 { name="RLRsim"; version="3.1-3"; sha256="1r0xqay3jfg435dh9fqc6yy73wjffp658da194rx63vpfhshgz8w"; depends=[lme4 mgcv nlme Rcpp]; }; RLogicalOps = derive2 { name="RLogicalOps"; version="0.1"; sha256="1qyn80x3x3bb5wgzyzw6pxs8a6q26yq1fkmkz7f5wywsnrj8hzfj"; depends=[rstackdeque stringr]; }; - RLumShiny = derive2 { name="RLumShiny"; version="0.1.0"; sha256="0j4w3h1j6dm5q98639am3xfixjdx2xhiiy3qghkb0z8lv5rbvvw5"; depends=[digest googleVis Luminescence RCurl shiny]; }; + RLumModel = derive2 { name="RLumModel"; version="0.2.0"; sha256="164bg9smxllwwk93g3g08v3902p5bl0i278dyal71cxycayzc8y1"; depends=[deSolve Luminescence Rcpp RcppArmadillo]; }; + RLumShiny = derive2 { name="RLumShiny"; version="0.1.1"; sha256="0wrn1lmwzigaq1w3a04mrz6ikgw2whr36718ckixphm5kcqlcnjr"; depends=[googleVis Luminescence shiny]; }; + RM_weights = derive2 { name="RM.weights"; version="1.0"; sha256="0757p4174j913k8xh90zg6fpxh25b9415zap1i7ym9ab78kn0k3i"; depends=[Hmisc psychotools]; }; RM2 = derive2 { name="RM2"; version="0.0"; sha256="1v57nhwg8jrpv4zi22fhrphw0p0haynq13pg9k992sb0c72dx70a"; depends=[msm]; }; - RMAWGEN = derive2 { name="RMAWGEN"; version="1.3.0"; sha256="19p8bxcfk802pdn6990ya0bd9ghbvg8vmk3z01x1v76w09j4bv38"; depends=[chron date vars]; }; + RMAWGEN = derive2 { name="RMAWGEN"; version="1.3.3"; sha256="0spc0vszbxfpfp3kqdj0gnb90nvn50qwalq3mw8151b8h1swmf3l"; depends=[chron date vars]; }; RMC = derive2 { name="RMC"; version="0.2"; sha256="1sc4nsjmaw2ajm8bka7r4mf73zxqhnvx23kl4v20pfpy9rhgd0h6"; depends=[]; }; RMKdiscrete = derive2 { name="RMKdiscrete"; version="0.1"; sha256="0b4adw46sn98qmy4nxv5l5svcjrp5532x7slfhhgsskqx408lzjf"; depends=[]; }; RMOA = derive2 { name="RMOA"; version="1.0"; sha256="01mrl6544wv2jc8b8gk1whs865sbv4id5sywnf1hq3r7g8wgs8lp"; depends=[rJava RMOAjars]; }; RMOAjars = derive2 { name="RMOAjars"; version="1.0"; sha256="0k3w37dwyyvfxh7a9l76cyjm27qq1clxppc5h16li2m8x68fvpjq"; depends=[rJava]; }; RMRAINGEN = derive2 { name="RMRAINGEN"; version="1.0"; sha256="175kd803a44yblq2jw5mrn2qv4piiy249577lf684bmmajf4ird4"; depends=[blockmatrix copula Matrix RGENERATE RMAWGEN]; }; + RMThreshold = derive2 { name="RMThreshold"; version="1.1"; sha256="0wkc42vcggib002ad6ch43h6avpdgl12szrrrfd2p0wl72cwn5n1"; depends=[Matrix png]; }; RMTstat = derive2 { name="RMTstat"; version="0.3"; sha256="1nn25q4kmh9kj975sxkrpa97vh5irqrlqhwsfinbck6h6ia4rsw1"; depends=[]; }; RMallow = derive2 { name="RMallow"; version="1.0"; sha256="0prd5fc98mlxnwjhscmghw62jhq9rj5jk8qf4fnaa2a718yxf9b5"; depends=[combinat]; }; - RMark = derive2 { name="RMark"; version="2.1.14"; sha256="15j50i05y8zpdawpk0x7ndhxwfcmxk3xajhh6lxzf81q1zg92hvd"; depends=[coda matrixcalc msm snowfall]; }; + RMark = derive2 { name="RMark"; version="2.2.2"; sha256="10qinncbvfkc1n6w5i4pc7zr4llc6jskq6p2m5783chxwrwzyjlj"; depends=[coda matrixcalc msm]; }; RMediation = derive2 { name="RMediation"; version="1.1.4"; sha256="19idqx0hwljbcfrpqwa81k7cxbd8kv77ji8yi4n4p7517jbkzma6"; depends=[e1071 lavaan MASS]; }; - RMixpanel = derive2 { name="RMixpanel"; version="0.2-1"; sha256="196z6qvcsh8xvpjaiif4l4h0xkmjgz8q35v5pqky9dc856v0cl9a"; depends=[digest jsonlite RCurl uuid]; }; + RMixpanel = derive2 { name="RMixpanel"; version="0.6-2"; sha256="09z00ryyk3jx1s7p2d1rzvg84qhybv58d1n3cvjcmj07bv1h2dj1"; depends=[jsonlite RCurl uuid]; }; RMongo = derive2 { name="RMongo"; version="0.0.25"; sha256="1anybw64bcipwsjc880ywzj0mxkgcj6q0aszdad6zd4zlbm444pc"; depends=[rJava]; }; - RMySQL = derive2 { name="RMySQL"; version="0.10.8"; sha256="1czy9ahsmh13djapcllh7dx93sfpz8hcfx5yzbnmwymhw5svkk96"; depends=[DBI]; }; + RMySQL = derive2 { name="RMySQL"; version="0.10.9"; sha256="0hpxjvr6yh2093ci7dwrww8wv9zhclfjk3wbx86jxvn87ms9qa21"; depends=[DBI]; }; RNCBIEUtilsLibs = derive2 { name="RNCBIEUtilsLibs"; version="0.9"; sha256="1h1ywx8wxy6n2rbpmjbqw4c0djz29pbncisd0mlbshj1fw226jba"; depends=[rJava]; }; - RNCEP = derive2 { name="RNCEP"; version="1.0.7"; sha256="0yvddsdpdrsg2dafmba081q4a34q15d7g2z5zr4qnzqb8wjwh6q2"; depends=[abind fields fossil maps RColorBrewer sp tgp]; }; - RND = derive2 { name="RND"; version="1.1"; sha256="1rbnjkfrsvm68xp90l4awixbvpid9nxnhg6i6fndpdmqwly2fwdp"; depends=[]; }; + RNCEP = derive2 { name="RNCEP"; version="1.0.8"; sha256="0nkx33997c5rgc3ch5a2bb6rrw5xw1y71rliygw5k1ldi335rsm7"; depends=[abind fields fossil maps RColorBrewer sp tgp]; }; + RND = derive2 { name="RND"; version="1.2"; sha256="1rl5apgw43c841z0lapi9z2jn979dvqh4x1qkqx1ad77zcq87c85"; depends=[]; }; + RNHANES = derive2 { name="RNHANES"; version="1.1.0"; sha256="045ykpgxvc22blbp47ysbk6a6x4akjd39pjr114cr23s7f48g6h4"; depends=[dplyr foreign rvest survey xml2]; }; RNaviCell = derive2 { name="RNaviCell"; version="0.2"; sha256="15k8hkagn5520fy7x672fy329s2v7l0x44s44f6v7ql9mmg4b635"; depends=[RCurl RJSONIO]; }; - RNeXML = derive2 { name="RNeXML"; version="2.0.6"; sha256="1ya628lhb6jidfwvl7dddsy9ww761zwznmg1m0snfqwggxc83y8g"; depends=[ape dplyr httr lazyeval plyr reshape2 stringr taxize tidyr uuid XML]; }; - RNeo4j = derive2 { name="RNeo4j"; version="1.6.3"; sha256="16lkick2swi60pbx1wy869286irv39xb4di5a2vlvbsqjdl0lnrc"; depends=[httr RJSONIO rstudioapi]; }; + RNeXML = derive2 { name="RNeXML"; version="2.0.7"; sha256="1q6ifqkypdj4hmm0f4mhwq8pidg4ba52c7k68527dk9rsrmiyjr6"; depends=[ape dplyr httr lazyeval plyr reshape2 stringr taxize tidyr uuid XML]; }; + RNeo4j = derive2 { name="RNeo4j"; version="1.6.4"; sha256="197ykvcfw1160ir6m568a4ksszyv5vlis2r0aygi155iz04j0bwm"; depends=[httr jsonlite rstudioapi]; }; RNetCDF = derive2 { name="RNetCDF"; version="1.8-2"; sha256="0pn45z1bj777nkfglvwwhpji8vz39sd51yszfa5g6rqxiw1a7y5d"; depends=[]; }; - RNetLogo = derive2 { name="RNetLogo"; version="1.0-2"; sha256="1j0f14n91gks288sph40ki9wr21dg0bsdk9143f1wwhmwr3jm4wi"; depends=[igraph rJava]; }; - RNewsflow = derive2 { name="RNewsflow"; version="1.0"; sha256="1lh9mnv1nvmpx8pqa3bqrv3zc2079hqzajdg73fbq5lfhdpb0rb3"; depends=[data_table igraph Matrix plyr scales slam tm wordcloud]; }; - RNiftyReg = derive2 { name="RNiftyReg"; version="2.2.0"; sha256="0mik24n3qp8j8iy88ss642rgll7rrhxyyc86zh40b6n8y9qc37wq"; depends=[ore Rcpp RcppEigen]; }; + RNetLogo = derive2 { name="RNetLogo"; version="1.0-3"; sha256="0aanp982c5xy4w4jsdcb9bmk1vyns055ad39hp206zaw3wj6vj3d"; depends=[igraph rJava]; }; + RNewsflow = derive2 { name="RNewsflow"; version="1.0.1"; sha256="1vxzcsiapnq8101iq4w73m9k8cq2khgcsxak71x72n295r7qpsd6"; depends=[data_table igraph Matrix plyr scales slam tm wordcloud]; }; + RNifti = derive2 { name="RNifti"; version="0.4.0"; sha256="1gj63rhzzrlxhwcwmn5jmq512zy08zhrbibh7w7xk0fzd6j0lkra"; depends=[Rcpp]; }; + RNiftyReg = derive2 { name="RNiftyReg"; version="2.5.0"; sha256="10ksakp62d1qhl1r8lk0k9f6ng9wfli3lhyd14bxigv625429isa"; depends=[ore Rcpp RcppEigen RNifti]; }; ROAuth = derive2 { name="ROAuth"; version="0.9.6"; sha256="0vhsp8qybrl94898m2znqs7hmlnlbsh8sm0q093dwdb2lzrqww4m"; depends=[digest RCurl]; }; ROC632 = derive2 { name="ROC632"; version="0.6"; sha256="0vgv4rclvb79mfj1phs2hmxhwchpc5rj43hvsj6bp7wv8cahfg5g"; depends=[penalized survival survivalROC]; }; ROCR = derive2 { name="ROCR"; version="1.0-7"; sha256="1jay8cm7lgq56i967vm5c2hgaxqkphfpip0gn941li3yhh7p3vz7"; depends=[gplots]; }; - ROCS = derive2 { name="ROCS"; version="1.2"; sha256="1liph11p5dwvm1z5vq7ph5pizzqrm6ami94cq6y5kvm2qyv0jfah"; depends=[rgl]; }; - ROCt = derive2 { name="ROCt"; version="0.9.4"; sha256="16kcq9dckwmn98izhnyzj9pcqb1ifs6b1hrx126gwb0zp3wdr8ym"; depends=[date relsurv survival timereg]; }; + ROCS = derive2 { name="ROCS"; version="1.3"; sha256="11vdf8701ap6ya7c7kx9jhvg7qfc6vkij3jridna6f4xj384grki"; depends=[poibin rgl]; }; + ROCt = derive2 { name="ROCt"; version="0.9.5"; sha256="0f7day0rv62ggm1nc7qkh45r6svr84mdk7xxpdf09pi4lbdx0rm6"; depends=[date relsurv survival timereg]; }; ROCwoGS = derive2 { name="ROCwoGS"; version="1.0"; sha256="029nramxwhzqim315g1vkg1zsszzkic28w6ahwg9n7bk9d08adzk"; depends=[]; }; - RODBC = derive2 { name="RODBC"; version="1.3-12"; sha256="042m7bwjhlzpq2hgzsq0zy4ri3s8ngw3w4qrqh1ag7fprpn55flj"; depends=[]; }; + RODBC = derive2 { name="RODBC"; version="1.3-14"; sha256="12zjyhfclxj7k9lxhdlwxqh7ckmh916hh3ywmhzbvzvxvzymnkgd"; depends=[]; }; RODBCDBI = derive2 { name="RODBCDBI"; version="0.1.1"; sha256="0jkcc1lm8drsx1pkfj5h6rlbr98cgpvbf9ndzdwr048f3s8gd26i"; depends=[DBI RODBC]; }; - RODBCext = derive2 { name="RODBCext"; version="0.2.5"; sha256="18a0ajqrq3rcfcsyz0c9mwq6bi03prpg83z9jasbbc866gqs6fvq"; depends=[RODBC]; }; + RODBCext = derive2 { name="RODBCext"; version="0.2.7"; sha256="0lklafxhs9s5gwd0jd7jmz7inalxc6967vl4r2faq7d07zxmsyd8"; depends=[RODBC]; }; RODM = derive2 { name="RODM"; version="1.1"; sha256="0cyi2y3lsw77gqxmawla5jlm4vnhsagh3ykdgb6izxslc4j2fszx"; depends=[RODBC]; }; - ROI = derive2 { name="ROI"; version="0.1-0"; sha256="01za8cxjf721m2lxnw352k8g32pglmllk50l7b8yhjwc49k8rl66"; depends=[registry slam]; }; - ROI_plugin_glpk = derive2 { name="ROI.plugin.glpk"; version="0.0-2"; sha256="10p3cq59app3xdv8dvqr24m937a36lzd274mdl2a9r4fwny2rssa"; depends=[Rglpk ROI]; }; - ROI_plugin_quadprog = derive2 { name="ROI.plugin.quadprog"; version="0.0-2"; sha256="0mkjq87rv1xf0bggpqd2r4gabv11spgcds2y94r3vpmh8krf71jf"; depends=[quadprog ROI slam]; }; - ROI_plugin_symphony = derive2 { name="ROI.plugin.symphony"; version="0.0-2"; sha256="1z4cahz0h38jw54p9363ca6i3qq7dwlm3568dr91gvpqf76b05wd"; depends=[ROI Rsymphony slam]; }; + ROI = derive2 { name="ROI"; version="0.2-1"; sha256="1g1qhrr62a74a8h73b75zxa5msbq5gv4cp1gmm0ihrjzzfzinvap"; depends=[registry slam]; }; + ROI_models_netlib = derive2 { name="ROI.models.netlib"; version="1.0"; sha256="13ai7zkd00a03vyzfy1sm64cx8328xzwz5v8yw0shkdz5rchaq2d"; depends=[ROI]; }; + ROI_plugin_cplex = derive2 { name="ROI.plugin.cplex"; version="0.2-1"; sha256="0ik4mmpd5x5233pdp88w8g605fg6lh4yvzlb9ndqxfnmv2nchgwl"; depends=[Rcplex ROI slam]; }; + ROI_plugin_ecos = derive2 { name="ROI.plugin.ecos"; version="0.2-4"; sha256="0lzxz9zs68y2pkkkfa8vgi4jiswbbh128idddfz3hqak5j1gg3rh"; depends=[ECOSolveR Matrix ROI slam]; }; + ROI_plugin_glpk = derive2 { name="ROI.plugin.glpk"; version="0.2-1"; sha256="01y66ir5s8spv4l8qz974wfkslxkqznzlc8padgrqm8vd9wli8k2"; depends=[Rglpk ROI]; }; + ROI_plugin_ipop = derive2 { name="ROI.plugin.ipop"; version="0.2-1"; sha256="1v6imxx9215f7hlqzscppyl7n9f9811rx58dia0h5ydfnhv4alxd"; depends=[kernlab ROI slam]; }; + ROI_plugin_lpsolve = derive2 { name="ROI.plugin.lpsolve"; version="0.0-1"; sha256="0k0308sgkac7z0d01sc9xcrd9pxjfb78gns4rp9mrxkz4k9yvm3h"; depends=[lpSolveAPI ROI]; }; + ROI_plugin_nloptr = derive2 { name="ROI.plugin.nloptr"; version="0.2-4"; sha256="1fyzpbljhkc15gmmsvr37hsmfr7fp7ffp9xylsnvy4zxlw060knp"; depends=[nloptr ROI]; }; + ROI_plugin_quadprog = derive2 { name="ROI.plugin.quadprog"; version="0.2-1"; sha256="0cb23xb56j0qn3v7zgqni1697s8bg256zr7dqm00i65f4zivws0j"; depends=[quadprog ROI slam]; }; + ROI_plugin_scs = derive2 { name="ROI.plugin.scs"; version="0.2-3"; sha256="1z039cnv75nk81b4qp1zwy09gvksaxlnxwgdg30mgzjd2mxcp5cf"; depends=[Matrix ROI scs slam]; }; + ROI_plugin_symphony = derive2 { name="ROI.plugin.symphony"; version="0.2-1"; sha256="0qvyindwcqiafq8k4m9plipdn5qrpycjk6mv90nmw644pnmip77l"; depends=[ROI Rsymphony slam]; }; ROMIplot = derive2 { name="ROMIplot"; version="1.0"; sha256="1njbsvnz7wrsv9l1p70p1ygmckaibz5i6jmvb0sfalp5jdcgl85n"; depends=[MortalitySmooth RCurl]; }; ROSE = derive2 { name="ROSE"; version="0.0-3"; sha256="12b9grh3rgaa07blbnxy8nvy5gvpd45m43bfqb3m4k3d0655jpk2"; depends=[]; }; - RObsDat = derive2 { name="RObsDat"; version="15.08"; sha256="0n64jqba682rdy696yfpi5l5sw6g33421hg1rnb1dwdnvr7yd0y9"; depends=[DBI e1071 sp spacetime vwr xts zoo]; }; + RObsDat = derive2 { name="RObsDat"; version="16.03"; sha256="06d4svg4crgscn3wyg1fi8v46wlhlrgdrbfiv8ak4a5k5z0gws94"; depends=[DBI e1071 sp spacetime vwr xts zoo]; }; + ROpenFIGI = derive2 { name="ROpenFIGI"; version="0.2.8"; sha256="0fvd25vsqkgi3jv4s2lnfag5qksyzyb48d7rhfw6z8piz37n4xaj"; depends=[httr jsonlite]; }; ROpenWeatherMap = derive2 { name="ROpenWeatherMap"; version="1.1"; sha256="0h1yw93v06bx8svhghh1fsrf837qax9896klh64b06djpgg9ngb9"; depends=[httr jsonlite RCurl]; }; - ROptEst = derive2 { name="ROptEst"; version="0.9"; sha256="0m5czyqcsz42dzrhm3vwfmn046n57cb7x5sqzf2nad1gqgxzxp1d"; depends=[distr distrEx distrMod RandVar RobAStBase]; }; + ROptEst = derive2 { name="ROptEst"; version="1.0"; sha256="1hq21rc9ydkgxv54a0zfrlncy4798rjvfmyqx2p88j0swaipy6wp"; depends=[distr distrEx distrMod RandVar RobAStBase startupmsg]; }; ROptEstOld = derive2 { name="ROptEstOld"; version="0.9.2"; sha256="0blf34xff9pjfy983xm7a27xqkh9173nk64ysas6f0g4h31gh8ax"; depends=[distr distrEx evd RandVar]; }; ROptRegTS = derive2 { name="ROptRegTS"; version="0.9.1"; sha256="1a8pbn63wh2w2n409yzbwvarvhphcn82rdqjh407ch3k3x6jz3r5"; depends=[distr distrEx RandVar ROptEstOld]; }; ROptimizely = derive2 { name="ROptimizely"; version="0.2.0"; sha256="059zfn6y687h989wryvpqwgnp9njrrr4ys0gf1ql4pw85b2c50dy"; depends=[httr jsonlite]; }; - ROracle = derive2 { name="ROracle"; version="1.2-2"; sha256="07ai4hmb9gjpx38l1jcdqlynpl5745m97lxvglrga6sv1z6q9cyb"; depends=[DBI]; }; - RPANDA = derive2 { name="RPANDA"; version="1.1"; sha256="1sjzph00rxilgk4vxiklfdn6ji2f9b5jz7hd83pcsdinrwy6pjxg"; depends=[ape cluster deSolve fpc igraph picante pspline pvclust TESS]; }; + ROracle = derive2 { name="ROracle"; version="1.3-1"; sha256="07zqzwaq5iqkjcmns2ahl1l71xjlznialb3dbyl4lwsh3p3fhf2n"; depends=[DBI]; }; + RPANDA = derive2 { name="RPANDA"; version="1.2"; sha256="0zp4zwh5gkywswrribyillgjvrp8hgbdn22c4iyl406wvbaiyy7y"; depends=[ape cluster corpcor deSolve fpc igraph phytools picante pspline pvclust TESS]; }; RPCLR = derive2 { name="RPCLR"; version="1.0"; sha256="03kpyszsjb656lfwx2yszv0a9ygxs1x1dla6mpkhcnqw00684fab"; depends=[MASS survival]; }; - RPEnsemble = derive2 { name="RPEnsemble"; version="0.2"; sha256="1kbgpbk7gma0vhl0aybdj7bk2chhbggzh7h1w7snddgdvvj6cz10"; depends=[class MASS]; }; + RPEnsemble = derive2 { name="RPEnsemble"; version="0.3"; sha256="052c9cnsrjxbk2yxj08psy3nw0mq3mdr75fhnxpz64n4cqzxbr2q"; depends=[class distr MASS]; }; RPMG = derive2 { name="RPMG"; version="2.2-1"; sha256="03gqam7lp6ycrwm30gdwh2irqkcviwzk74ysyxff7b23ng4jkz1j"; depends=[]; }; RPMM = derive2 { name="RPMM"; version="1.20"; sha256="09rwrcd8jz0nii1vx0n3b4daidiq0kp0vf88bvi84y4i06743il7"; depends=[cluster]; }; RPPairwiseDesign = derive2 { name="RPPairwiseDesign"; version="1.0"; sha256="0k2vh698rhs5a0b5vhyvrnnwqnagdzs591zx6hn9vbmm8rm4y1dm"; depends=[]; }; RPPanalyzer = derive2 { name="RPPanalyzer"; version="1.4.3"; sha256="0qgvr671zir8d1q5rzdy0gkljsfr7bz1aj47xpkbbpkjr5hqgihj"; depends=[Biobase gam ggplot2 gplots Hmisc lattice limma quantreg]; }; - RPostgreSQL = derive2 { name="RPostgreSQL"; version="0.4"; sha256="0gpmbpiaiqvjzyl84l2l8v2jnz3h41v8jl99sp1qvvyrjrickra2"; depends=[DBI]; }; - RPresto = derive2 { name="RPresto"; version="1.2.0"; sha256="0dv7yqxy0pj85dbpr1l6lh33rmmxw5g3fy7g3bvraaif3h3f1pv0"; depends=[DBI httr jsonlite RCurl stringi]; }; - RProtoBuf = derive2 { name="RProtoBuf"; version="0.4.3"; sha256="00sik2ri64bvvhrdpb91myrhzwwk3y67m214mi21q3b8710mmcaf"; depends=[Rcpp RCurl]; }; + RPostgreSQL = derive2 { name="RPostgreSQL"; version="0.4-1"; sha256="0ydz206ir797rv435if3653fnnyihgmhr5d0n4zhlrs1m1zy74k2"; depends=[DBI]; }; + RPresto = derive2 { name="RPresto"; version="1.2.1"; sha256="1lka1p4wh1vl9bpg2q4yv72jcd6jjp09330mw68ph27jqhfzinmm"; depends=[DBI httr jsonlite RCurl stringi]; }; + RProtoBuf = derive2 { name="RProtoBuf"; version="0.4.8"; sha256="11z0ka5zlg6kglnm4ix4rfw2wakps6js11fzx762f78945g14r1s"; depends=[Rcpp RCurl]; }; + RPtests = derive2 { name="RPtests"; version="0.1.3"; sha256="0gprbd4m889kaklvc7ljbsl8m7l02pkfrdrzs84d92lgphg0wv9n"; depends=[glmnet randomForest Rcpp]; }; RPublica = derive2 { name="RPublica"; version="0.1.3"; sha256="1w2pn1g44a00ls8kkzj53a739pq6vzp38px2k0yh10rlzimmb21l"; depends=[curl httr jsonlite]; }; - RPushbullet = derive2 { name="RPushbullet"; version="0.2.0"; sha256="1h9yvw9kw7df0ijwhfc2bi29y61fl9zg3mp4xygx3fyr9mycjm7a"; depends=[RJSONIO]; }; - RQDA = derive2 { name="RQDA"; version="0.2-7"; sha256="05h2f5sk0a14bhzqng5xp87li24b6n11p5lcxf9xpy7sbmh5ig6g"; depends=[DBI gWidgets gWidgetsRGtk2 igraph RGtk2 RSQLite]; }; - RQuantLib = derive2 { name="RQuantLib"; version="0.4.2"; sha256="1sj77iw712jp3rcpmyw3b4x1sfsw7qmb56dbl13vwcxnh5jqs1is"; depends=[Rcpp]; }; - RRF = derive2 { name="RRF"; version="1.6"; sha256="1gp224mracrz53vnxwfvd7bln18v8x7w130wslhfgcdl0n4f2d28"; depends=[]; }; + RPushbullet = derive2 { name="RPushbullet"; version="0.3.1"; sha256="15cb1zlfnjaf5z4dqx3xrkbkja152ah7jhs21qhvfl20qz4cyh7r"; depends=[curl jsonlite]; }; + RQDA = derive2 { name="RQDA"; version="0.2-8"; sha256="103mb69x70z1i7z66b2if6zycr5iwcz1p3g8vvz0npmxncr4las9"; depends=[DBI gWidgets gWidgetsRGtk2 igraph RGtk2 RSQLite]; }; + RQGIS = derive2 { name="RQGIS"; version="0.2.0"; sha256="1c160nd33qncp7cjzx6dw3b1scx90czak8wqgf73jn903zynn2m4"; depends=[raster RCurl rgdal sp XML]; }; + RQuantLib = derive2 { name="RQuantLib"; version="0.4.3"; sha256="1c0ilkrgkyf5x31c51rkszm4bnscyv7hy101dlk0cqkjril7mp7m"; depends=[Rcpp zoo]; }; + RRF = derive2 { name="RRF"; version="1.7"; sha256="1nxwqb0ybia8cglqlrbwnm9xzab6ayrn5f3j3l0kqszq1rvkfw95"; depends=[]; }; RRNA = derive2 { name="RRNA"; version="1.0"; sha256="14rcqh95ygybci8hb8ays8ikb22g3850s9f3sgx3r4f0ky52dcba"; depends=[]; }; RRTCS = derive2 { name="RRTCS"; version="0.0.3"; sha256="1riz1gjx3c0pf17xwybizb94nm5zgmfsnv6np3afvw831mb1x3l9"; depends=[sampling samplingVarEst]; }; + RRate = derive2 { name="RRate"; version="1.0"; sha256="1q3f2gphdf50aijnk5xqfpxcqfd4jq7byb1gpb0vcnaxgi3a9lwm"; depends=[]; }; + RRedshiftSQL = derive2 { name="RRedshiftSQL"; version="0.1.2"; sha256="03jbml8d19hcg6achnyc4hcnl5j10yvsx59j80r46zyn0flsnizq"; depends=[DBI RPostgreSQL]; }; RRreg = derive2 { name="RRreg"; version="0.6.1"; sha256="1vf40xcg39hh9wz6hjfr2p10pzpbs4b6x5hmsf1njajcf6yfl09q"; depends=[doParallel foreach lme4]; }; RSA = derive2 { name="RSA"; version="0.9.10"; sha256="0m9gd1h9ghj6gfwixwy8hhc2625f9mi473zp55zdl5w2q10qk3ij"; depends=[aplpack ggplot2 lattice lavaan plyr RColorBrewer tkrplot]; }; RSADBE = derive2 { name="RSADBE"; version="1.0"; sha256="1nzpm88rrzavk0n8iflsx8r3s1xcry15n80zqdw6jijjycz10w1q"; depends=[]; }; RSAGA = derive2 { name="RSAGA"; version="0.94-5"; sha256="0lbvy1p6wcxnn70149wcpmfy2ijk6g37ka452dxm0w0zpg0zga1w"; depends=[gstat plyr shapefiles]; }; RSAP = derive2 { name="RSAP"; version="0.9"; sha256="1sxirfabhpmfm0yiiazc9h1db70hqwva2is1dql6sjfanpl8qanl"; depends=[reshape yaml]; }; + RSAgeo = derive2 { name="RSAgeo"; version="1.2"; sha256="1lgxcf5sd7aqk213s70mvi0kc4prm1w97m4wf3xjnvs7yc7mb5yz"; depends=[]; }; + RSCABS = derive2 { name="RSCABS"; version="0.9.01"; sha256="1zx2272381i24hdpb1dks3l7szds9i0rl119ljxh9f61z4fbkrhp"; depends=[gWidgets gWidgetsRGtk2 R2HTML RGtk2]; }; RSDA = derive2 { name="RSDA"; version="1.3"; sha256="0f2f6bn11p43sv8zmvqpf5w1rdisf7b2dvllhiy3pg9f6r1mc85k"; depends=[abind FactoMineR ggplot2 glmnet princurve RJSONIO scales scatterplot3d sqldf XML]; }; - RSEIS = derive2 { name="RSEIS"; version="3.5-2"; sha256="1mm4l6yymd564ahc189iaanw8j51jxdfpiif47zf4603irl1bglp"; depends=[RPMG Rwave]; }; + RSEIS = derive2 { name="RSEIS"; version="3.6-8"; sha256="1jhxd1aq85abll5vrdbbyz52ch8xyaxzqf5r2nzvnc6953hv6jnf"; depends=[RPMG Rwave]; }; RSGHB = derive2 { name="RSGHB"; version="1.1.2"; sha256="0b2v17p3a3sy8jc4vy0nq65sdkxyf0b8sf5f78yvdcn5knydah6c"; depends=[]; }; - RSKC = derive2 { name="RSKC"; version="2.4.1"; sha256="1dvzxf001a9dg71l4bh8z3aia7mymqy800268qf7qzy9n6552g59"; depends=[flexclust]; }; + RSIP = derive2 { name="RSIP"; version="1.0.0"; sha256="1yddqbnz0av69l53y83m7rnznc42qz66fc3qrispzaajs7p9n8d7"; depends=[ncdf4 raster rasterVis rgdal sp]; }; + RSKC = derive2 { name="RSKC"; version="2.4.2"; sha256="0r9gpwhzscb6rbba3dg13p78pvskahgvsd59biag0shyii3xvwpm"; depends=[flexclust]; }; RSMET = derive2 { name="RSMET"; version="1.2.9"; sha256="1da7kck5g0vcd1ly7xaa1i8d9b1qjf6kwf35sq5d71hfbgx2fb4k"; depends=[stringr]; }; - RSNNS = derive2 { name="RSNNS"; version="0.4-7"; sha256="15293a6lrihk407spv2ndpcf0r9xm5l8ggc1sagf5r2mvbfiv57c"; depends=[Rcpp]; }; - RSNPset = derive2 { name="RSNPset"; version="0.5"; sha256="0jkibpimh61n869r260qilkacq64awcjgpz46wvqadxw330a3p8c"; depends=[doRNG fastmatch foreach qvalue Rcpp RcppEigen]; }; + RSNNS = derive2 { name="RSNNS"; version="0.4-9"; sha256="08f2yyyc42jxqwyhvwakjkyillkc23chnk2b3bfzyxnb4pphbdfl"; depends=[Rcpp]; }; + RSNPset = derive2 { name="RSNPset"; version="0.5.2"; sha256="11w2r1gfnzhqa5pwgy8nfs9s6lmln3cwkxxkid8fdg4b3ndwfl46"; depends=[doRNG fastmatch foreach qvalue Rcpp RcppEigen]; }; RSPS = derive2 { name="RSPS"; version="1.0"; sha256="0ynxhgnxsf27qm8r5d9lyd59zksnc3kvx35hy25vff8j3bg7fqgi"; depends=[gridExtra lattice plyr]; }; - RSQLServer = derive2 { name="RSQLServer"; version="0.2.0"; sha256="1lxk4qw8kl0v7fjl9836arjyvqwwrmph5wyhcmmzg1i6ldn0rd7f"; depends=[assertthat DBI dplyr lubridate rJava RJDBC yaml]; }; - RSQLite = derive2 { name="RSQLite"; version="1.0.0"; sha256="08b1syv8z887gxiw8i09dpqh0zisfb6ihq6qqr01zipvkahzq34f"; depends=[DBI]; }; - RSVGTipsDevice = derive2 { name="RSVGTipsDevice"; version="1.0-4"; sha256="1ybk5q4dhskrh7h1sy86ilchdwi6rivy3vv3lph6pms2virgm854"; depends=[]; }; + RSQLite = derive2 { name="RSQLite"; version="1.1-2"; sha256="0mg9yhdvny3vjn72agai5ghqxd3vk8cd4x1lsc0gzc2b2dm2w0p4"; depends=[BH DBI memoise plogr Rcpp]; }; + RSSL = derive2 { name="RSSL"; version="0.6.1"; sha256="03f0i0v0nygkcci42h4bh7jngxz15wsd78cn2zkzbrqadz1c61r5"; depends=[cluster dplyr ggplot2 kernlab MASS Matrix quadprog Rcpp RcppArmadillo reshape2 scales tidyr]; }; + RSSOP = derive2 { name="RSSOP"; version="1.1"; sha256="119xrxpaf68qdb2kj2pbaja6im2nbxsgibb1bnlpnc3fcxkmqcsf"; depends=[]; }; + RSVGTipsDevice = derive2 { name="RSVGTipsDevice"; version="1.0-7"; sha256="0jdr8l0hp4kzsvlgs8j1m74sr98z4v2lmiqinmc238m406nhppab"; depends=[]; }; + RSarules = derive2 { name="RSarules"; version="1.0"; sha256="0lrql4q45hyhqbix86ixl12mknnjbz3137gx2zkvqpz91bsk145j"; depends=[arules Matrix]; }; + RSauceLabs = derive2 { name="RSauceLabs"; version="0.1.6"; sha256="1p7hw6vnlg6w5ggmfpc3q3s6n1fikjkjnxzz97jifiy0zwn5dp9i"; depends=[data_table httr jsonlite whisker xml2]; }; RSclient = derive2 { name="RSclient"; version="0.7-3"; sha256="07mbw6mcin9ivsg313ycw2pi901x9vjpmi6q7sms1hml4yq50k6h"; depends=[]; }; - RSeed = derive2 { name="RSeed"; version="0.1.31"; sha256="0wljchzkp8800v9zcgjapkbildkb3p2xnkh1m6m7q6qqc9aw8mws"; depends=[graph RBGL sybil]; }; - RSelenium = derive2 { name="RSelenium"; version="1.3.5"; sha256="15pnmnljl4dm9gbcgnad5j58k6cgs6qm34829kdgyb0ygs9q7ya0"; depends=[caTools RCurl RJSONIO XML]; }; + RSeed = derive2 { name="RSeed"; version="0.1.60"; sha256="0rvb6w4z5c2wcdgx5w6vv7c8il8d0096pgv3fyvw21ag25z605jc"; depends=[graph RBGL sybil]; }; + RSelenium = derive2 { name="RSelenium"; version="1.7.1"; sha256="04ghck76jh7w6kgzdszkzjwj9fhyngq13mf9iybavxph5wcy7xgq"; depends=[binman caTools httr openssl wdman XML]; }; + RSentiment = derive2 { name="RSentiment"; version="2.1"; sha256="0gcmgnczqhz8vzwj8img32z95si1ywbg2mvfd3rwlxzxqdkxg98v"; depends=[NLP openNLP plyr stringr]; }; RSiena = derive2 { name="RSiena"; version="1.1-232"; sha256="0qp3bqq5p19bg47m37s2dw8m4q91hnkc2zxwhsgb076q0xvvv9xq"; depends=[Matrix]; }; - RSiteCatalyst = derive2 { name="RSiteCatalyst"; version="1.4.7"; sha256="09g64ndfglpznjp39k4ry40rn7h6chjs3xfs9h3vh3wg7qy8q4vx"; depends=[base64enc digest httr jsonlite plyr stringr]; }; - RSocrata = derive2 { name="RSocrata"; version="1.7.0-14"; sha256="1nw3ga1ff1vsgfljmqdwcmxv9w04nldjrish2226l3r8632iy4am"; depends=[httr jsonlite mime]; }; - RSofia = derive2 { name="RSofia"; version="1.1"; sha256="0q931y9rcf6slb0s2lsxhgqrzy4yqwh8hb1124nxg0bjbxvjbihn"; depends=[Rcpp]; }; - RSpectra = derive2 { name="RSpectra"; version="0.11-0"; sha256="04r59jv0s7ji05d0q1yis8fljj7c5rj82sh7hhl8dfxzy4d6f8hb"; depends=[Matrix Rcpp RcppEigen]; }; + RSiteCatalyst = derive2 { name="RSiteCatalyst"; version="1.4.10"; sha256="1wi2rv5wwibw8m0xd37f284b14irg2gnm31yz73c3wpic2sbf3wf"; depends=[base64enc digest httr jsonlite plyr stringr]; }; + RSmartlyIO = derive2 { name="RSmartlyIO"; version="0.1.1"; sha256="1xxs5q25v3i0qf829xl8n90n2fx1anfgfrzvwzff4dm252y7b2gw"; depends=[RCurl]; }; + RSocrata = derive2 { name="RSocrata"; version="1.7.1-24"; sha256="19myaccxxa11b92zi0ra53b6n5dx0af8ymxymqpmg7hlr3v6n82x"; depends=[httr jsonlite mime plyr]; }; + RSpectra = derive2 { name="RSpectra"; version="0.12-0"; sha256="0aa33mhzj03gznpza5l5qj94s45imfhrgx52bsa8rq00f93fgaf0"; depends=[Matrix Rcpp RcppEigen]; }; RSpincalc = derive2 { name="RSpincalc"; version="1.0.2"; sha256="09fjwfz1bzpbca1bpzxj18ki8wh9mrr5h6k75sc97cyhlixqd37s"; depends=[]; }; RStars = derive2 { name="RStars"; version="1.0"; sha256="1siwqm8sp8wqbb56961drkwcnkv3w1xiy81hxy0zcr2z7rscv7mh"; depends=[RCurl RJSONIO]; }; - RStata = derive2 { name="RStata"; version="1.0.0"; sha256="07y9c1yk2kh37adsdn3vx2k8hqggffiipn5gl1qf6ai5ls5xmfg5"; depends=[foreign]; }; - RStoolbox = derive2 { name="RStoolbox"; version="0.1.4"; sha256="0f6qr6zd2ajfvwxnsa09pdcr42fhg4wd07qr1a4yb7yk0jqawayy"; depends=[caret codetools doParallel foreach geosphere ggplot2 plyr raster Rcpp RcppArmadillo reshape2 rgeos sp XML]; }; + RStata = derive2 { name="RStata"; version="1.1.1"; sha256="1wx6cz4567xkfplybmbwmw25snhlaxn48yi620cv6p5xqv458yp7"; depends=[foreign]; }; + RStoolbox = derive2 { name="RStoolbox"; version="0.1.7"; sha256="122z9792bsh5afd1j9z7q8j1039hf86axw12w1r5cbrnkccnbgpj"; depends=[caret codetools doParallel foreach geosphere ggplot2 raster Rcpp RcppArmadillo reshape2 rgeos sp XML]; }; RStorm = derive2 { name="RStorm"; version="0.902"; sha256="1apk358jwzg5hkrcq8h39rax1prgz9bhkz9z51glmci88qrw1frv"; depends=[plyr]; }; - RSurveillance = derive2 { name="RSurveillance"; version="0.1.0"; sha256="1y17bfv0glzzb5rfniia0z4px810kgv2gns0igizw7w427zshnm0"; depends=[epiR epitools]; }; - RSurvey = derive2 { name="RSurvey"; version="0.8-3"; sha256="0dqrajd3m2v5cd3afl9lni9amfqfv4vhz7kakg3a5180j5rcag12"; depends=[MBA rgeos sp]; }; + RStripe = derive2 { name="RStripe"; version="0.1"; sha256="0vp7zsd5xm8rf7196fivb76kkmxfx3gawxlyjhn9xqv92vawivra"; depends=[httr jsonlite RCurl]; }; + RSurveillance = derive2 { name="RSurveillance"; version="0.2.0"; sha256="1lvl9msnd8l9svd9nyivx1cqfmcxirxvfjfj0xv7yjklza8af7w3"; depends=[epiR epitools mc2d]; }; + RSurvey = derive2 { name="RSurvey"; version="0.9.0"; sha256="09ivilmwvjjbs3451cyxhcgq2w9rx6b8b5dsgg6y7l478k5bffrw"; depends=[colorspace inlmisc MBA raster rgdal rgeos sp]; }; RSvgDevice = derive2 { name="RSvgDevice"; version="0.6.4.4"; sha256="0vplac5jzg6bmvbpmj4nhiiimsr9jlbk8mzyifnnndk9iyf2lcmz"; depends=[]; }; RTConnect = derive2 { name="RTConnect"; version="0.1.4"; sha256="1000jmmqzyhl6vh1ii75jdh88s9inaz52gvfwcin2k2zr7bi91ba"; depends=[]; }; RTDE = derive2 { name="RTDE"; version="0.2-0"; sha256="1dj7dsj4256z9m70y2fpcgprxpqbgqxz0dqwn0jl80sj2325f66s"; depends=[]; }; RTOMO = derive2 { name="RTOMO"; version="1.1-3"; sha256="10qkqdx2zj2m854z9s57ddf5jbzagac9mq5v6z5393c0s8bx10x8"; depends=[GEOmap RPMG RSEIS splancs]; }; RTextTools = derive2 { name="RTextTools"; version="1.4.2"; sha256="1j3zfywq8xgax51mbizxz704i3ys4vzp8hyi5kkjzq6g2lw7ywq2"; depends=[caTools e1071 glmnet ipred maxent nnet randomForest SparseM tau tm tree]; }; RTextureMetrics = derive2 { name="RTextureMetrics"; version="1.1"; sha256="0d0mvpmcpd62cvqlajrqp32lnvpflyf9bqvdzly2v8v1kb8274fc"; depends=[]; }; - RTriangle = derive2 { name="RTriangle"; version="1.6-0.6"; sha256="1g4dp792awbvsl35nvyd8gkx99p2njdcafin16qysfrjl43f5i4s"; depends=[]; }; + RTriangle = derive2 { name="RTriangle"; version="1.6-0.8"; sha256="0mngwi7ybcg6lsk3f7faljwnzsfvyxln4jd2s2hiirr303ml4wzg"; depends=[]; }; RUnit = derive2 { name="RUnit"; version="0.4.31"; sha256="1jqr871jkll2xmk7wk5hv1z3a36hyn2ibgivw7bwk4b346940xlx"; depends=[]; }; - RVAideMemoire = derive2 { name="RVAideMemoire"; version="0.9-53"; sha256="0lapj54w0vr2v5qsnllq1p7nibqldqw1pi2qxlzzypl9lixznxw2"; depends=[ade4 boot car cramer lme4 MASS mixOmics multcompView nnet pls pspearman statmod vegan]; }; + RVAideMemoire = derive2 { name="RVAideMemoire"; version="0.9-62"; sha256="0b4g0ia5kawamm6mpzw04365j1cgf8py5dp18kdsqwgisxxm699f"; depends=[ade4 boot car cramer dunn_test FactoMineR lme4 MASS mixOmics multcompView nnet pls pspearman statmod vegan]; }; RVFam = derive2 { name="RVFam"; version="1.1"; sha256="0gw8rgq11zndnqmay6y3y5rmmljvwhxzm2pqa90vs5413dnchq92"; depends=[coxme kinship2 lme4 MASS Matrix survival]; }; RVPedigree = derive2 { name="RVPedigree"; version="0.0.3"; sha256="0v47bcdlcd0ydw4vffy1g9lj1azvyqwz4400nmlqshf9vqyhf9qq"; depends=[CompQuadForm doParallel foreach kinship2 ks Matrix snpStats]; }; RVideoPoker = derive2 { name="RVideoPoker"; version="0.3"; sha256="06s4dlw0pw8rcq5b31xxqdpdk396rf27mai2vpvmn585vbm1ib7a"; depends=[pixmap rpanel tkrplot]; }; - RViennaCL = derive2 { name="RViennaCL"; version="1.7.1-1"; sha256="135wa3q954nrkwfs5q0x2z9q6izjxyz4wzk7wx4ncx56jqp038kz"; depends=[]; }; - RVowpalWabbit = derive2 { name="RVowpalWabbit"; version="0.0.6"; sha256="06f2lmls92qkbscss00c99xkzpx83mgjah6ds0sixv1b2qi216ap"; depends=[Rcpp]; }; - RVsharing = derive2 { name="RVsharing"; version="1.4.0"; sha256="1csnmh3hhzbzp6cj7s8q41bjac26ng0p22vd696pqc0sl0fprppw"; depends=[kinship2]; }; + RViennaCL = derive2 { name="RViennaCL"; version="1.7.1.4"; sha256="0g7ckda8a278zg5vpfgajpa17r4hknf5akn556afyhmigj8bdax1"; depends=[]; }; + RVowpalWabbit = derive2 { name="RVowpalWabbit"; version="0.0.8"; sha256="013mh8ghxccrhdcrcdfqll2jgf3z5zw7fsn0083bn3nkr19xbabz"; depends=[Rcpp]; }; + RVsharing = derive2 { name="RVsharing"; version="1.7.0"; sha256="1z1jwj6dzyib8sxpz4p4wpiizfhxz6sp62nnig779rhnv7wfkqqf"; depends=[kinship2]; }; RVtests = derive2 { name="RVtests"; version="1.2"; sha256="0k7w6ml981zvr5bix197qw4kaf7rz5jqnwqlxf7aryxbm39gk16c"; depends=[glmnet pls spls]; }; RWBP = derive2 { name="RWBP"; version="1.0"; sha256="104vr2cdk185hh4zn3vmqvb14p1q8ifk11wdgvk7fli1m1zxxwdd"; depends=[igraph lsa RANN SnowballC]; }; - RWeather = derive2 { name="RWeather"; version="0.4"; sha256="1vm8w07gsxwxvg1gpdzn6mpnh8g9kp0ln9fxjw5rl2f1zz80bxpy"; depends=[XML]; }; RWebLogo = derive2 { name="RWebLogo"; version="1.0.3"; sha256="1n65mlnr163ywjnyyngnigbj0wpgkr38c3nx8hw5r8mwjnf3d617"; depends=[findpython]; }; - RWeka = derive2 { name="RWeka"; version="0.4-25"; sha256="0bskypj9153593jq4l4rn9wibydv3py9pq2qmk803d3aqggbqzyg"; depends=[rJava RWekajars]; }; - RWekajars = derive2 { name="RWekajars"; version="3.7.13-1"; sha256="0g8xddi654s4xih5mx6fr1ra7jha9hxhnbns688vqp7l75nv5xgf"; depends=[rJava]; }; - RWiener = derive2 { name="RWiener"; version="1.2-0"; sha256="1ssh4xcyr4whgyd91p6bjsm9mq1ajqjqva0yyk13dnf5jfpsr0gs"; depends=[]; }; - RXKCD = derive2 { name="RXKCD"; version="1.7-5"; sha256="0dsds1bv2vfq61gfppar2ai23dryh09ric5i6zaccms6q64z23md"; depends=[jpeg plyr png RJSONIO]; }; + RWeka = derive2 { name="RWeka"; version="0.4-31"; sha256="0g801r5whb9iw6lxkjv89w042qb3iig8qw7bpwxjnlc2i8didzy4"; depends=[rJava RWekajars]; }; + RWekajars = derive2 { name="RWekajars"; version="3.9.1-1"; sha256="0kr9amnldnaz5vhmy0qkr3a0393wzqcl5x55qc8yqxq6g1ypzg5v"; depends=[rJava]; }; + RWiener = derive2 { name="RWiener"; version="1.3-1"; sha256="0w12xvc18l002m8q6ad3laa667xzqjbcfqf0vvcmicgw2j3bbq6h"; depends=[]; }; + RWildbook = derive2 { name="RWildbook"; version="0.9.2"; sha256="1bzdj55v7g2vlffpdsxpl8gv4k1xxd3xl7h1whvq6q5x76lprw0g"; depends=[data_table jsonlite marked]; }; + RXKCD = derive2 { name="RXKCD"; version="1.7-7"; sha256="13g5nylxh6ms57k2bhz3isfwcbxr4z0swcqja8inky25bid7jqgk"; depends=[jpeg png RJSONIO]; }; RXMCDA = derive2 { name="RXMCDA"; version="1.5.5"; sha256="1ci73q8xf3xxqw8b7sk83v5vz2cqgcb4lkx7qi3hd1ff4xkz1fpa"; depends=[kappalab XML]; }; RXshrink = derive2 { name="RXshrink"; version="1.0-8"; sha256="0l4aknr1vxrkxqsgkjcffs0731jskyzvl055a01vd8h4a0826n5s"; depends=[lars]; }; RYandexTranslate = derive2 { name="RYandexTranslate"; version="1.0"; sha256="0qrv5mnnkn5fs7vx6i74z46s0qj9f98km5bizgj00832qyrq8q1s"; depends=[httr jsonlite RCurl]; }; RYoudaoTranslate = derive2 { name="RYoudaoTranslate"; version="1.0"; sha256="1i3iyqh97vpn02bm66kkmw52ni29js30v18n2aw8pvr88jpdgxm4"; depends=[RCurl rjson]; }; - RadOnc = derive2 { name="RadOnc"; version="1.1.1"; sha256="05ba1yb37fzd2w3w69r4kyjnpgxjg5ssixxhh4iak6g9b3c0i5gq"; depends=[geometry oro_dicom ptinpoly rgl]; }; + RZabbix = derive2 { name="RZabbix"; version="0.1.0"; sha256="0c5803chpzvp7dk9pjfx5f0nqynb76ywakz04ah2nw07ypvcyjyr"; depends=[httr jsonlite]; }; + RadOnc = derive2 { name="RadOnc"; version="1.1.2"; sha256="03pcv5wh1v12k6wys4n1j2gz1x0pzrxnjj7lbimcy7plv183psfi"; depends=[geometry oro_dicom ptinpoly rgl]; }; RadTran = derive2 { name="RadTran"; version="1.0"; sha256="1sb8d4y3b37akbxhdavxrkp34zn3ip061b7gzy0ga57pyn76cvpn"; depends=[ReacTran rootSolve]; }; RadioSonde = derive2 { name="RadioSonde"; version="1.4"; sha256="1v9jdpynmb01m3syhas1s08xxlvjawhlvjkyhils2iggi4xw4hiq"; depends=[]; }; + Radviz = derive2 { name="Radviz"; version="0.7.0"; sha256="0x1b3s3i3f775m7ragvzpdswljry8adbkjb6aq35aqasnkvvnysq"; depends=[gridBase hexbin KernSmooth MASS]; }; + Ramble = derive2 { name="Ramble"; version="0.1.1"; sha256="0225za85i5nvf8l89i5bz7nxsxykd3v9fp1wgihmncca6n8vhgpl"; depends=[]; }; Rambo = derive2 { name="Rambo"; version="1.1"; sha256="1yc04xsfkc54y19g5iwambgnlc49ixjjvfrafsgis2zh5w6rjwv8"; depends=[sna]; }; - Ramd = derive2 { name="Ramd"; version="0.2"; sha256="0a64rp4dwhfr6vxsmya16x7wy7rxj4n98sdhhyy0ll850rdzlxd8"; depends=[]; }; - RandVar = derive2 { name="RandVar"; version="0.9.2"; sha256="04hw4v2d9aa8z9f8wvwbzhbfy8zjl5q8mpl9b91q86fhh1yq5cz4"; depends=[distr distrEx]; }; - RandomFields = derive2 { name="RandomFields"; version="3.1.8"; sha256="1yaf7mzhi61n7s3n44fxwilry5s7wnqq7sbx09jarm1jkbn3gk6x"; depends=[RandomFieldsUtils sp]; }; - RandomFieldsUtils = derive2 { name="RandomFieldsUtils"; version="0.0.14"; sha256="1phnzmj9cbdaxp1v47irxk0c41fyh5qqs7m9y1gxvkpy2l8xkfr2"; depends=[]; }; + RandPro = derive2 { name="RandPro"; version="0.1.0"; sha256="10zb8xhcb54jscfnpz734c7kh43pgi3bb61yasi6rvlqd83g1zdn"; depends=[]; }; + RandVar = derive2 { name="RandVar"; version="1.0"; sha256="0iqq1hh1gl2kzgyfxp6bs31pmj5ic4y6wqwm7iaj20gk2wv923jg"; depends=[distr distrEx startupmsg]; }; + RandomFields = derive2 { name="RandomFields"; version="3.1.36"; sha256="04pj5zl6az69xa9nr044l1rqkl4hzxdzvw99yvn0qppiqkn8grc2"; depends=[RandomFieldsUtils sp]; }; + RandomFieldsUtils = derive2 { name="RandomFieldsUtils"; version="0.3.15"; sha256="0cr8xngvc5984q4h444x05lqxqh6ml8pcgg3pigyg77jafapmy6l"; depends=[]; }; RankAggreg = derive2 { name="RankAggreg"; version="0.5"; sha256="1c5ckk2pfkdxs3l24wgai2xg817wv218fzp7w1r3rcshxf0dcz2i"; depends=[gtools]; }; RankResponse = derive2 { name="RankResponse"; version="3.1.1"; sha256="04s588zbxcjgvpmbb2x46bbf5l15xm7pwiaxjgc1kn1pn6g1080c"; depends=[]; }; - Rankcluster = derive2 { name="Rankcluster"; version="0.93.1"; sha256="1ki0x8fkdzvycyqgx5z2wrdgcjmbj0c379f88k6hngvg7h1fq05k"; depends=[Rcpp RcppEigen]; }; + Rankcluster = derive2 { name="Rankcluster"; version="0.94"; sha256="0ak6cpm073ym4h9l3j7pq0ks9h4is1hzxfjn52j23nc5ifq3fjpq"; depends=[Rcpp RcppEigen]; }; RapidPolygonLookup = derive2 { name="RapidPolygonLookup"; version="0.1"; sha256="0m6r11ksryzcfcm265wr9fhwb867j9ppfhalvvygzig5j85sg92k"; depends=[PBSmapping RANN RgoogleMaps sp]; }; - Rarity = derive2 { name="Rarity"; version="1.3-4"; sha256="0zz1axr8a1r6js0la2ncls0l6jnjvx807ay2ngzb52hqbijifghx"; depends=[]; }; + Rarity = derive2 { name="Rarity"; version="1.3-6"; sha256="1m742qrgc0c5vda9sb2q5n3ghmqnlnfhr1cfpxfs7s5ic707gmlb"; depends=[]; }; RaschSampler = derive2 { name="RaschSampler"; version="0.8-8"; sha256="0y7dkgv1cy6r1mbmyqm27qwl10rl12g1svpx9jkzq5hq0hnm2xhw"; depends=[]; }; RateDistortion = derive2 { name="RateDistortion"; version="1.01"; sha256="1micjlbir1v5ar51g1x7bgkqw9m8217qi82ii6ysgjkhwdvpm075"; depends=[]; }; + RatingScaleReduction = derive2 { name="RatingScaleReduction"; version="1.0"; sha256="0ch368wvvknm38wvjhk2ia0ihk8hikpssph9n0q4p2gzq9m4vj57"; depends=[ggplot2 pROC]; }; + Rbent = derive2 { name="Rbent"; version="0.1.0"; sha256="0xkb57dhhfd3342rv0xwbhbhn4zp5fbfch84fbh0sickm09l9vrj"; depends=[Rfit]; }; RbioRXN = derive2 { name="RbioRXN"; version="1.5.1"; sha256="0lc43wm986y3xbdh1xihn7w583cql9kvj6rb018pn06ghz153i0d"; depends=[ChemmineR data_table fmcsR gdata KEGGREST plyr RCurl stringr]; }; Rbitcoin = derive2 { name="Rbitcoin"; version="0.9.2"; sha256="0ndq4kg1jq6h0jxwhpdp8sw1n5shg53lwa1x0bi7rifmy0gnh66f"; depends=[data_table digest RCurl RJSONIO]; }; - Rblpapi = derive2 { name="Rblpapi"; version="0.3.3"; sha256="1w5dwza2ly38yz0cpazjibvfv147z86njrwxmdhw9msz2a7lj2gj"; depends=[BH Rcpp]; }; - Rborist = derive2 { name="Rborist"; version="0.1-0"; sha256="1irb9scl68m7skqdwny9kvnzg7f1r0q1c0whzqyhhj9l4lw16hmr"; depends=[Rcpp RcppArmadillo]; }; + Rblpapi = derive2 { name="Rblpapi"; version="0.3.5"; sha256="1ykwk3iv4ji8pmcm7kgppqg6sh5gw51n6sv039sfzapw6357i5vq"; depends=[BH Rcpp]; }; + Rborist = derive2 { name="Rborist"; version="0.1-3"; sha256="034mn30in3y8pmwks3xp8qadgzfjslp01py8jwm4zqsb3icxcvi5"; depends=[Rcpp RcppArmadillo]; }; Rcapture = derive2 { name="Rcapture"; version="1.4-2"; sha256="1nsxy5vpfv7fj03i6l5pgzjm0cldwqxxycnvqkfkshbryjcyl0ps"; depends=[]; }; RcellData = derive2 { name="RcellData"; version="1.3-2"; sha256="1zzkgpj2pc42xzz5pspyj981a04gjpna4br3lxna255366ijgz4l"; depends=[]; }; - Rcereal = derive2 { name="Rcereal"; version="1.1.2"; sha256="1cl2b96zk9kc01n7xp60z3855lscczf18yjyp0h3lgf57cr04gf5"; depends=[]; }; + Rcereal = derive2 { name="Rcereal"; version="1.2.1"; sha256="0nl4p0wqpni16z62610sqcxsz1x6kannl2s1zakpmjkk80pyxlk6"; depends=[]; }; Rcgmin = derive2 { name="Rcgmin"; version="2013-2.21"; sha256="02igq7bdlxwa7ysfiyvqfhcvgm866lrp2z3060z5lmnp6afa0958"; depends=[numDeriv]; }; - Rchoice = derive2 { name="Rchoice"; version="0.3"; sha256="1ac2nw03g66z2rgxzv8jqad74cp4c9ry0hvnw77d57ddaxszkrva"; depends=[Formula maxLik msm plm plotrix]; }; + Rchoice = derive2 { name="Rchoice"; version="0.3-1"; sha256="1mx50270vbhvng4vdcc6w94f3l890vjl41y07bqkv40n93fxvffw"; depends=[Formula maxLik msm plm plotrix]; }; Rclusterpp = derive2 { name="Rclusterpp"; version="0.2.3"; sha256="02s5gmmmd0l98wd1y884pjl3h289dyd9p9s7dh7yl2zaslqs2094"; depends=[Rcpp RcppEigen]; }; - Rcmdr = derive2 { name="Rcmdr"; version="2.2-3"; sha256="1mbd5m5gc3x9ndx3c8a4ra1zh8c7ppc6bir2f7i6bwcji5jr2jbm"; depends=[abind car RcmdrMisc tcltk2]; }; - RcmdrMisc = derive2 { name="RcmdrMisc"; version="1.0-3"; sha256="134yr2n0m61bw8rv1iar2l9dk9a178k2pxba0bsxrd1c9j3s1f0j"; depends=[abind car colorspace e1071 Hmisc MASS readxl sandwich]; }; + Rcmdr = derive2 { name="Rcmdr"; version="2.3-2"; sha256="07p22b6kbx2md6h911jzgiin2rds76aizn9d7nd6l4lxp8a76c09"; depends=[abind car RcmdrMisc relimp tcltk2]; }; + RcmdrMisc = derive2 { name="RcmdrMisc"; version="1.0-5"; sha256="11y53wzxflpyq6p187yihs0xpa9nv2rkqhzl70k0mrchvv625bcr"; depends=[abind car colorspace e1071 Hmisc MASS readxl sandwich]; }; RcmdrPlugin_BCA = derive2 { name="RcmdrPlugin.BCA"; version="0.9-8"; sha256="0xkip7q9i57ghgz0rh0pl8nkl7bflf4w1g4zbyjdlcjypyf7lnr8"; depends=[BCA car flexclust foreign nnet Rcmdr RcmdrMisc rpart rpart_plot]; }; + RcmdrPlugin_BiclustGUI = derive2 { name="RcmdrPlugin.BiclustGUI"; version="1.1.0"; sha256="1gigmvzmndxnplsy9w3znj6x4qayka7flzpgj5nsxaqw8xp1z1ip"; depends=[BcDiag BiBitR BicARE biclust fabia gplots iBBiG Rcmdr rqubic s4vd superbiclust viridis]; }; RcmdrPlugin_DoE = derive2 { name="RcmdrPlugin.DoE"; version="0.12-3"; sha256="1iifn71kjjgcp7dfz2pjq57mgbv4rrznrl3b3k9gdc2dva1z9zvc"; depends=[DoE_base DoE_wrapper FrF2 Rcmdr RcmdrMisc relimp]; }; RcmdrPlugin_EACSPIR = derive2 { name="RcmdrPlugin.EACSPIR"; version="0.2-2"; sha256="10r6rb0fwlilcnqxa38zh7yxc54x1a0by5x4f6gzdn9zs7aj5l1r"; depends=[abind ez nortest R2HTML Rcmdr RcmdrMisc reshape]; }; RcmdrPlugin_EBM = derive2 { name="RcmdrPlugin.EBM"; version="1.0-10"; sha256="02zips1jbfn7cshjlrm1gr632px2zxlys8i0f1nrf1gifl44v1qw"; depends=[abind epiR Rcmdr]; }; - RcmdrPlugin_EZR = derive2 { name="RcmdrPlugin.EZR"; version="1.32"; sha256="1zd467z7ydlv9w9gr4qqs3yl4xbmxc8pfw55mqdn6zz11xjbxbpk"; depends=[Rcmdr]; }; - RcmdrPlugin_EcoVirtual = derive2 { name="RcmdrPlugin.EcoVirtual"; version="0.1"; sha256="00yk09c1d1frwpfq12zvhg4gnc3p63r61abnil623jpr6wh4b2x8"; depends=[EcoVirtual Rcmdr]; }; + RcmdrPlugin_EZR = derive2 { name="RcmdrPlugin.EZR"; version="1.35"; sha256="1lppf84s9ymdmbyx6p7f2vvkrg7gbap5rf2yf759l0bqjcx954a7"; depends=[Rcmdr]; }; + RcmdrPlugin_EcoVirtual = derive2 { name="RcmdrPlugin.EcoVirtual"; version="1.0"; sha256="0q879wnrmgbaddv883q9zdnp0i7kjcgn8cffv7lp8nrsqil6l7mc"; depends=[EcoVirtual Rcmdr]; }; RcmdrPlugin_Export = derive2 { name="RcmdrPlugin.Export"; version="0.3-1"; sha256="17fn3si6b6h20c52k1k6fv9mslw3f9v0x1kxixzcvq54scdx0sk0"; depends=[Hmisc Rcmdr xtable]; }; RcmdrPlugin_FactoMineR = derive2 { name="RcmdrPlugin.FactoMineR"; version="1.6-0"; sha256="07k9x3mdaqzk1503wjsha9f8bxzw1074i9g7sa16yqz5lwky4lr7"; depends=[FactoMineR Rcmdr]; }; + RcmdrPlugin_FuzzyClust = derive2 { name="RcmdrPlugin.FuzzyClust"; version="1.1"; sha256="1lg6k3h4n45s6wjkl3ycwfngfr2i6mkhirifhbazsvv297bg0iba"; depends=[clue doParallel foreach ggplot2 iterators MASS Rcmdr reshape2 tcltk2 tkrplot]; }; RcmdrPlugin_GWRM = derive2 { name="RcmdrPlugin.GWRM"; version="1.0.1"; sha256="1ib9lpvz0ns3f44in29cvh746zl101lrv29p1df1zcdfcjnq1qq1"; depends=[GWRM Rcmdr RcmdrMisc]; }; - RcmdrPlugin_HH = derive2 { name="RcmdrPlugin.HH"; version="1.1-43"; sha256="0bn94wcrzvcrzhixh8kyg5gkax762mskhm2wvdfz1sm3n6fc7281"; depends=[HH lattice mgcv Rcmdr]; }; + RcmdrPlugin_HH = derive2 { name="RcmdrPlugin.HH"; version="1.1-46"; sha256="0bl9nq89ga16rxlf411lbm5qsx28f1axxwchr5rp46n0h15d0d3f"; depends=[HH lattice mgcv Rcmdr]; }; RcmdrPlugin_IPSUR = derive2 { name="RcmdrPlugin.IPSUR"; version="0.2-1"; sha256="1lk7divj5va74prsnchq8yx9fbyym7xcsyqzkf72w448fgvvvwlv"; depends=[Rcmdr]; }; - RcmdrPlugin_KMggplot2 = derive2 { name="RcmdrPlugin.KMggplot2"; version="0.2-3"; sha256="1nkpj36mxqlfnxk7q023vbcm202kcjhba5jjccqkpikmggbqx9jz"; depends=[ggplot2 ggthemes plyr Rcmdr RColorBrewer scales survival tcltk2]; }; + RcmdrPlugin_KMggplot2 = derive2 { name="RcmdrPlugin.KMggplot2"; version="0.2-4"; sha256="0lmsd76q31bg2j8jd5p0891wi8cxibpjqx0196177w3y9kgcj3s1"; depends=[ggplot2 ggthemes plyr Rcmdr RColorBrewer scales survival tcltk2]; }; RcmdrPlugin_MA = derive2 { name="RcmdrPlugin.MA"; version="0.0-2"; sha256="1zivlc0r2mkxpx23ba76njmb2wnnjijysvza4f24dg4l47d0sr2p"; depends=[MAd metafor Rcmdr]; }; - RcmdrPlugin_MPAStats = derive2 { name="RcmdrPlugin.MPAStats"; version="1.2.0"; sha256="13nrgrxx2x76mq0xanhwdcadc82pd6i3q535nxn55jspabir6lqc"; depends=[ordinal Rcmdr]; }; - RcmdrPlugin_NMBU = derive2 { name="RcmdrPlugin.NMBU"; version="1.8.5"; sha256="1sj2f7mhlny2wn5wp4ig9ivl3nlywscapxdy01vmq0fczv073hfp"; depends=[MASS mixlm pls Rcmdr xtable]; }; - RcmdrPlugin_RMTCJags = derive2 { name="RcmdrPlugin.RMTCJags"; version="1.0-1"; sha256="1hk8gmv74mngcx2pjgv1zkdh2csixxgd4yqz38bdn1l2zf243czq"; depends=[coda igraph Rcmdr rmeta runjags]; }; + RcmdrPlugin_MPAStats = derive2 { name="RcmdrPlugin.MPAStats"; version="1.2.1"; sha256="0c3mcr8bmmbpxsqm8zfy07cbyglnq5466nafbglfs5m0z836yz9i"; depends=[ordinal Rcmdr]; }; + RcmdrPlugin_NMBU = derive2 { name="RcmdrPlugin.NMBU"; version="1.8.7"; sha256="1pfv4ar3i9mkj6d4jv206dpwhbz5an1yd4g758pxsanliy5mi6cb"; depends=[MASS mixlm phia pls Rcmdr xtable]; }; + RcmdrPlugin_PcaRobust = derive2 { name="RcmdrPlugin.PcaRobust"; version="1.1.4"; sha256="17rq3sv8payazjjn5j37cgd6df5b62d2y8al3grw6hw5nfba7lvn"; depends=[Rcmdr robustbase rrcov tkrplot]; }; + RcmdrPlugin_RMTCJags = derive2 { name="RcmdrPlugin.RMTCJags"; version="1.0-2"; sha256="04g5a1dpch54k5ckfkrg4vsap1nc3af1i0i559qigv3hy8n7pm80"; depends=[coda igraph Rcmdr rjags rmeta runjags]; }; RcmdrPlugin_ROC = derive2 { name="RcmdrPlugin.ROC"; version="1.0-18"; sha256="0alwsvwry4k65ps00zvdqky9rh663bbfaw15lhwydbgcpqdkn2n6"; depends=[pROC Rcmdr ResourceSelection ROCR]; }; RcmdrPlugin_SCDA = derive2 { name="RcmdrPlugin.SCDA"; version="1.1"; sha256="0pd765ndh8d7hy6spds3r4pi09i0ak4b1ygwczp6yr2zcs1aikbc"; depends=[Rcmdr SCMA SCRT SCVA]; }; RcmdrPlugin_SLC = derive2 { name="RcmdrPlugin.SLC"; version="0.2"; sha256="1nwpzmgfla1y05dxf81w0wmvvmvcq5jn5k8phlq30920ia7ybs8g"; depends=[Rcmdr SLC]; }; RcmdrPlugin_SM = derive2 { name="RcmdrPlugin.SM"; version="0.3.1"; sha256="10sjh2x02kb6yaxbvd9ihc6777j4iv6wi6k42gyl3k7i2c39fyn3"; depends=[car colorspace Rcmdr RColorBrewer vcd]; }; - RcmdrPlugin_TeachingDemos = derive2 { name="RcmdrPlugin.TeachingDemos"; version="1.0-7"; sha256="0d473p0df99x9a3jfwb49gxsrcvslcw9yandramwq82cwy3sdcxw"; depends=[Rcmdr rgl TeachingDemos]; }; - RcmdrPlugin_UCA = derive2 { name="RcmdrPlugin.UCA"; version="2.0-5"; sha256="1ykfln99qh07v6n0xaawgckrbw4vsnamsyzz0d47sgg8ffdbxifr"; depends=[randtests Rcmdr tseries]; }; + RcmdrPlugin_TeachingDemos = derive2 { name="RcmdrPlugin.TeachingDemos"; version="1.1-0"; sha256="0fgl1v1g74ca14pf3mmbv26j09v7jy6ddyap5qavgiy9s8qrwrh8"; depends=[Rcmdr rgl TeachingDemos tkrplot]; }; + RcmdrPlugin_UCA = derive2 { name="RcmdrPlugin.UCA"; version="3.1-2"; sha256="1zhfa376409hyz375qvjf55my47dps2x8mlqn5a4pdcasmz90brp"; depends=[car randtests Rcmdr tseries]; }; RcmdrPlugin_coin = derive2 { name="RcmdrPlugin.coin"; version="1.0-22"; sha256="0qmdjnjmgq52wgl4llg69q9x7hvwd73mz3swv0sv88v8zqg7xj93"; depends=[coin multcomp Rcmdr survival]; }; RcmdrPlugin_depthTools = derive2 { name="RcmdrPlugin.depthTools"; version="1.3"; sha256="09mjn5jn4rdj1lh515vr3xlnk615flg13kcwbpk0an2si4xkgm9h"; depends=[depthTools Rcmdr]; }; RcmdrPlugin_doex = derive2 { name="RcmdrPlugin.doex"; version="0.2.0"; sha256="0l3c8vwifyl8a7qkfaqxm7cws2cg1g501qa93w5svcgp03yf98mj"; depends=[multcomp Rcmdr]; }; RcmdrPlugin_epack = derive2 { name="RcmdrPlugin.epack"; version="1.2.5"; sha256="1577qhac4rldifax5x3l39cddan6dhq2dv4iv2n64nadgrl0259w"; depends=[abind forecast MASS Rcmdr TeachingDemos tseries xts]; }; - RcmdrPlugin_lfstat = derive2 { name="RcmdrPlugin.lfstat"; version="0.7"; sha256="009yj9c5cr34k8qa16q19sp7c5iwv95g9swbm004nr18mfah8x9w"; depends=[lfstat Rcmdr]; }; + RcmdrPlugin_lfstat = derive2 { name="RcmdrPlugin.lfstat"; version="0.8.1"; sha256="1ak2fvz1sdbdr1y1w7i15gibwdh4a3662kvr23pka4lfpbsyrah8"; depends=[lfstat Rcmdr]; }; RcmdrPlugin_mosaic = derive2 { name="RcmdrPlugin.mosaic"; version="1.0-7"; sha256="0k6xaz2dfm9ch9lxqsh19jm8d4bbyjj2ffmjjxl57kanb3pvrrwv"; depends=[ENmisc Hmisc Rcmdr vcd]; }; RcmdrPlugin_orloca = derive2 { name="RcmdrPlugin.orloca"; version="4.1"; sha256="19qj6llr5sfw267dgbn2jvrsisb54qbjhgaiigfzymk6px33wwmg"; depends=[orloca orloca_es Rcmdr]; }; RcmdrPlugin_plotByGroup = derive2 { name="RcmdrPlugin.plotByGroup"; version="0.1-0"; sha256="10wc7lnihsrldsynq2s0syr1aqmvfnj9rhgwh1nkk7jlrwcgj0z6"; depends=[lattice Rcmdr]; }; @@ -2095,162 +2584,188 @@ in with self; { RcmdrPlugin_seeg = derive2 { name="RcmdrPlugin.seeg"; version="1.0"; sha256="105c2rl3mrcv7r3iqa9d2zs6cys7vfpyydylkg2cggfqkghxgr95"; depends=[Rcmdr seeg sgeostat spatstat]; }; RcmdrPlugin_sos = derive2 { name="RcmdrPlugin.sos"; version="0.3-0"; sha256="1r9jxzmf5ks62b5jbw0pkf388i1lnld6i27xhfzysjqdxcnzdsdz"; depends=[Rcmdr sos tcltk2]; }; RcmdrPlugin_steepness = derive2 { name="RcmdrPlugin.steepness"; version="0.3-2"; sha256="1na98sl42896y7yklaj07sn88lj6p6ik7gwy9ffaxzicqaa8plgf"; depends=[Rcmdr steepness]; }; - RcmdrPlugin_survival = derive2 { name="RcmdrPlugin.survival"; version="1.0-5"; sha256="1gcc9l1x0vmzmq7v09mzybig1js5jsgsq84096yk494w3dnzrr0a"; depends=[date Rcmdr survival]; }; - RcmdrPlugin_temis = derive2 { name="RcmdrPlugin.temis"; version="0.7.5"; sha256="07lzn84na59sibgmyrrn444klxqgqqw0zf88j0ycnn41152hb4yi"; depends=[ca lattice latticeExtra NLP R2HTML Rcmdr RColorBrewer slam stringi tcltk2 tm zoo]; }; + RcmdrPlugin_survival = derive2 { name="RcmdrPlugin.survival"; version="1.1-1"; sha256="0hgf52pk81wii2jfw69csapm4gw7xrp1cm08b9n2d29chgw0gww6"; depends=[date Rcmdr survival]; }; + RcmdrPlugin_temis = derive2 { name="RcmdrPlugin.temis"; version="0.7.8"; sha256="0sgh2nqmlxsa6nzwdcdpad1q1mwwm6nb4xqpx4wj5afyisq2fbwr"; depends=[ca lattice latticeExtra NLP R2HTML Rcmdr RColorBrewer slam stringi tcltk2 tm zoo]; }; + Rcoclust = derive2 { name="Rcoclust"; version="0.1.1"; sha256="1f4li4pr1cl0nnq21rbk1qksn44zl2p65w9zs6k9k4mb050cyjqy"; depends=[]; }; Rcolombos = derive2 { name="Rcolombos"; version="2.0.2"; sha256="0l92icjqqm5fxafqwd09lnmv5x6kvjdg8cphlm37q86nslwr5rkk"; depends=[httr]; }; - Rcplex = derive2 { name="Rcplex"; version="0.3-2"; sha256="1hx9s327af7yawzyq5isvx8n6pvr0481lrfajgh8nihj7g69nmk7"; depends=[slam]; }; - Rcpp = derive2 { name="Rcpp"; version="0.12.3"; sha256="11i3w6q5hwqq9mglyqdrj5fphb3iwrcp178kb4bjm95s2jzv5krr"; depends=[]; }; + Rcplex = derive2 { name="Rcplex"; version="0.3-3"; sha256="0abmrqphrpdlc831hwbwx15z4vdgn385kxhnqlbb9v0sjmfyszsl"; depends=[slam]; }; + Rcpp = derive2 { name="Rcpp"; version="0.12.9"; sha256="0pndpgmfmvkssvn9m3i4nbq2n6hxz3i4i8y2nlycn2gdipr0vggh"; depends=[]; }; Rcpp11 = derive2 { name="Rcpp11"; version="3.1.2.0"; sha256="1x6n1z7kizagr5ymvbwqb7nyn3lca4d4m0ks33zhcn9gay6g0fac"; depends=[]; }; - RcppAPT = derive2 { name="RcppAPT"; version="0.0.1"; sha256="0fyya80bd3w22qbsbznj9y21dwlj30a16d8a8kww4x8bpvmyil5z"; depends=[Rcpp]; }; - RcppAnnoy = derive2 { name="RcppAnnoy"; version="0.0.7"; sha256="0lhpnlrgdki8ljswi4yr2pfsm5lqx7ckfb09zlsjdw0lkz0vdb49"; depends=[Rcpp]; }; - RcppArmadillo = derive2 { name="RcppArmadillo"; version="0.6.600.4.0"; sha256="0h83rkv706r36lawi21d7pv030zv81sdqzygjca95d43gvz8ap4l"; depends=[Rcpp]; }; + RcppAPT = derive2 { name="RcppAPT"; version="0.0.3"; sha256="0q1iwhf1rafzr6d7pjbxs0ii0anbfrzrl1kpz1ka5yvjw39s3kr8"; depends=[Rcpp]; }; + RcppAnnoy = derive2 { name="RcppAnnoy"; version="0.0.8"; sha256="14hw9nrqwcqx2xwam03wfxk07qg648gp0cnk76c4knpr6pmad9sx"; depends=[Rcpp]; }; + RcppArmadillo = derive2 { name="RcppArmadillo"; version="0.7.700.0.0"; sha256="03cvl2xgmvh4sylw7ff7s020y7k2wzyj34l0zngm09qs44pa9q0m"; depends=[Rcpp]; }; RcppBDT = derive2 { name="RcppBDT"; version="0.2.3"; sha256="0gnj4gz754l80df7w3d5qn7a57z9kq494n00wp6f7vr8aqgq8wi1"; depends=[BH Rcpp]; }; - RcppCCTZ = derive2 { name="RcppCCTZ"; version="0.0.3"; sha256="0zsif6ijp806h3lrz5i3cfv84sb4mvc58mpb6iwrcfdwxagb3c8q"; depends=[Rcpp]; }; - RcppCNPy = derive2 { name="RcppCNPy"; version="0.2.4"; sha256="1cawaxghbliy7hgvqz3y69asl43bl9mxf46nwpbxc0vx3cq15fnk"; depends=[Rcpp]; }; + RcppBlaze = derive2 { name="RcppBlaze"; version="0.1.1"; sha256="0r6mzsm2gq77i8cylcvgg7hn0399d3v11wlf89v559vslkv2b2m0"; depends=[BH Matrix Rcpp]; }; + RcppCCTZ = derive2 { name="RcppCCTZ"; version="0.2.1"; sha256="0895cc1rzppniakvrl1r6k4c3vm45ppihv3vwvf5x062ag34yqsd"; depends=[Rcpp]; }; + RcppCNPy = derive2 { name="RcppCNPy"; version="0.2.6"; sha256="0j2sj1yzpqmw6krjfyjklw4pmkdqdsnyvlfqbic0w1h8gs1mq6yb"; depends=[Rcpp]; }; RcppClassic = derive2 { name="RcppClassic"; version="0.9.6"; sha256="1xhjama6f1iy7nagnx1y1pkqffrq8iyplllcar24vxr0zirgi1xi"; depends=[Rcpp]; }; RcppClassicExamples = derive2 { name="RcppClassicExamples"; version="0.1.1"; sha256="0shs12y3gj5p7gharjik48dqk0fy4k2jx7h22ppvgbs8z85qjrb8"; depends=[Rcpp RcppClassic]; }; RcppDE = derive2 { name="RcppDE"; version="0.1.5"; sha256="1zgz8h7d7jjml9hm164y9wrsgcb1fymp3ipxp235fmk44lbrwpcw"; depends=[Rcpp RcppArmadillo]; }; RcppDL = derive2 { name="RcppDL"; version="0.0.5"; sha256="1gii00bna6k9byaax7gsx42dv1jjnkrp4clbmdq59ybq3vkvw8z2"; depends=[Rcpp]; }; - RcppEigen = derive2 { name="RcppEigen"; version="0.3.2.8.1"; sha256="10fn13fvlip92n8pbv08988ll89c6zjr9d9jj8zw5i9iamwbik6f"; depends=[Matrix Rcpp]; }; - RcppExamples = derive2 { name="RcppExamples"; version="0.1.7"; sha256="1dyw040cw8zvr2rryf2qw5jmvc3hpn292wk3iiagjgkibqx49af9"; depends=[Rcpp]; }; + RcppEigen = derive2 { name="RcppEigen"; version="0.3.2.9.0"; sha256="0fy9kr03160f1ywzff3p380s8a59jz7d2d0rggb14g2y0slzpbr5"; depends=[Matrix Rcpp]; }; + RcppExamples = derive2 { name="RcppExamples"; version="0.1.8"; sha256="15iw2vx6ygb03siq743418whhqvfrxk2i4nqn7p9yg1m3jwafxna"; depends=[Rcpp]; }; RcppFaddeeva = derive2 { name="RcppFaddeeva"; version="0.1.0"; sha256="1rah18sdfmbcxy83i7vc9scrwyr34kn9xljkv9pa31js68gn2jrl"; depends=[knitr Rcpp]; }; - RcppGSL = derive2 { name="RcppGSL"; version="0.3.0"; sha256="1960sn9c3k1vp791c11srkid2nvvnhwl3hjrcaaljd590bxh4hz8"; depends=[Rcpp]; }; - RcppMLPACK = derive2 { name="RcppMLPACK"; version="1.0.10-2"; sha256="1hdvdk6ni2iganmldarklv635yzgzja36zcpflh5w45c5y3ysqvj"; depends=[BH Rcpp RcppArmadillo]; }; + RcppGSL = derive2 { name="RcppGSL"; version="0.3.1"; sha256="00jqn1ix0qpv1zn8ciz161pq6gxq5had1afm194k6k7hahph3bip"; depends=[Rcpp]; }; + RcppGetconf = derive2 { name="RcppGetconf"; version="0.0.2"; sha256="0z5sg2jlr465196ws2pqi7j7hfmd7j8xlqqj6841m635cg4q48ba"; depends=[Rcpp]; }; + RcppHMM = derive2 { name="RcppHMM"; version="1.0.1"; sha256="10ssg2558s6cw6f6adzpw76qcsizbllc70y1s8vbhb2xkc26d1cn"; depends=[Rcpp]; }; + RcppHoney = derive2 { name="RcppHoney"; version="0.1.6"; sha256="1llbs6x4qcvgnlmnd391s1j9lqvybnnq3d4gjwyyc8vy2i5jr28c"; depends=[Rcpp]; }; + RcppMLPACK = derive2 { name="RcppMLPACK"; version="1.0.10-6"; sha256="0vjx6azp3sny6nv5k1cs6vk61hmbllqw8mgvi7zn15p7ilmhsyyi"; depends=[BH Rcpp RcppArmadillo]; }; + RcppNumerical = derive2 { name="RcppNumerical"; version="0.3-1"; sha256="1b88iz0f13w148jrmd3qdkagycs7w3yr82y4zgn123kp17y7vvny"; depends=[Rcpp RcppEigen]; }; RcppOctave = derive2 { name="RcppOctave"; version="0.18.1"; sha256="1b2mwnsx799a86hdpkqy6l1m048g8hqz57l70siybkxnlaib3z0f"; depends=[digest pkgmaker Rcpp stringr]; }; - RcppParallel = derive2 { name="RcppParallel"; version="4.3.15"; sha256="03hyawm2zispknz157nn8rvf52kg15jdl0pv8282zjrq8xh8477x"; depends=[]; }; - RcppProgress = derive2 { name="RcppProgress"; version="0.2.1"; sha256="1dah99679hs6pcaazxyc52xpx5wawk95r2bpx9fx0i33fqs1s4ng"; depends=[Rcpp]; }; - RcppRedis = derive2 { name="RcppRedis"; version="0.1.6"; sha256="1jslck903qi6i8vsb7a2svh887linak00ylmhabzkbbsjrjchp9h"; depends=[RApiSerialize Rcpp]; }; + RcppParallel = derive2 { name="RcppParallel"; version="4.3.20"; sha256="1hc325hj214s61694iy4j3ly5zkya25h92hki29n3562qiirpb0g"; depends=[BH]; }; + RcppProgress = derive2 { name="RcppProgress"; version="0.3"; sha256="0796g11w7iv3ix1wfm3fh09qq7jki4r4cp1mjagq77igri3xrr9x"; depends=[Rcpp]; }; + RcppRedis = derive2 { name="RcppRedis"; version="0.1.7"; sha256="0x456zrd7qv8iclhdbgl4bwa1bvpirlqx6ywsincj6y0446f13rz"; depends=[BH RApiSerialize Rcpp]; }; RcppRoll = derive2 { name="RcppRoll"; version="0.2.2"; sha256="19xzvxym8zbighndygkq4imfwc0abh4hqyq3qrr8aakyd096iisi"; depends=[Rcpp]; }; RcppSMC = derive2 { name="RcppSMC"; version="0.1.4"; sha256="1gcqffb6rkw029cpzv7bzsxaq0a5b032zjvriw6yjzyrpi944ip7"; depends=[Rcpp]; }; - RcppShark = derive2 { name="RcppShark"; version="0.1"; sha256="04l70d51ww247q0irk6jyhy3csybb8bhrw9cidinb0b18dcqmbyq"; depends=[BH checkmate Rcpp]; }; - RcppStreams = derive2 { name="RcppStreams"; version="0.1.0"; sha256="0pb9ri2jajfh7643wx730bkmpvjvvmip682ynm2yn6x6brjll6jf"; depends=[BH Rcpp]; }; - RcppTOML = derive2 { name="RcppTOML"; version="0.0.5"; sha256="0c4595ps1wawdx5f1ipsa4rg307rp4f0fivpl4qa1qhps6hn9h0f"; depends=[Rcpp]; }; + RcppShark = derive2 { name="RcppShark"; version="3.1.0"; sha256="0fyf7ffv5hhxnandrrx9xg72zwrw8cp73bwmb48iy5514gdwg77a"; depends=[BH checkmate Rcpp]; }; + RcppStreams = derive2 { name="RcppStreams"; version="0.1.1"; sha256="0sa0ndnfm89f8lh3ba6jf3gxaan1g97dhlzbmpkwqj22frgggqjw"; depends=[BH Rcpp]; }; + RcppTOML = derive2 { name="RcppTOML"; version="0.1.1"; sha256="1kmhmi13666zv3zsy3wlmh13picvicjc1nrlv9dqjzwcwahpih1l"; depends=[Rcpp]; }; RcppXts = derive2 { name="RcppXts"; version="0.0.4"; sha256="143rhz97qh8sbr6p2fqzxz4cgigwprbqrizxpkjxyhq8347g8p4i"; depends=[Rcpp xts]; }; RcppZiggurat = derive2 { name="RcppZiggurat"; version="0.1.3"; sha256="0s82haf96krr356lcf978f229np6w0aihm2qxcnlm0w3i02gzh3x"; depends=[Rcpp RcppGSL]; }; - Rcsdp = derive2 { name="Rcsdp"; version="0.1.53"; sha256="0x91hyx6z9f4zd7djxlq7dnznmr9skyzwbbcbjyid9hxbcfyvhcp"; depends=[]; }; - Rd2roxygen = derive2 { name="Rd2roxygen"; version="1.6"; sha256="0y0vh1dfflh8lrgrdj9wfmwh70ywd9kiia49f09h849mv1ln1z60"; depends=[formatR roxygen2]; }; + Rcsdp = derive2 { name="Rcsdp"; version="0.1.55"; sha256="1sskjf2vv5alnwirz676d8yphzk2a69wkghhkpxb8my1rjlfdgaw"; depends=[]; }; + Rd2roxygen = derive2 { name="Rd2roxygen"; version="1.6.1"; sha256="1rvqb3lsn5br9cmj63c9ql4dkp0igdrag65sxgajpsyqkpyg17qn"; depends=[formatR roxygen2]; }; + Rdice = derive2 { name="Rdice"; version="1.0.0"; sha256="1xibvm690808p2g3jch7rh1825yrpgln2hjfclgxjwn822qvs4xr"; depends=[data_table]; }; Rdistance = derive2 { name="Rdistance"; version="1.3.2"; sha256="1ajmr58lgc74727jiydfrh4j6ra7vq8hp8nm3l2s3g2mc8n1mqk5"; depends=[]; }; - Rdpack = derive2 { name="Rdpack"; version="0.4-18"; sha256="0s387gadr1bz5f5ix69z0r9hzcp5w4axbrn1iq9932kkincmg8qj"; depends=[bibtex gbRd]; }; - Rdsdp = derive2 { name="Rdsdp"; version="1.0.4"; sha256="1cgfm2yyqak9hgyzb8k7c9rspbplcckwxnkq2wqapfgx2majxrip"; depends=[]; }; + Rdpack = derive2 { name="Rdpack"; version="0.4-20"; sha256="1b1vikh8py4lvf6w90919y8f5aq9xyhv2pprfyzfx0671k99cz6z"; depends=[bibtex gbRd]; }; + Rdsdp = derive2 { name="Rdsdp"; version="1.0.4-2"; sha256="05bk6yqvhzvyfzga1dz34w68nlwl2dc8bvhh3ghd07a61fsnkg4x"; depends=[]; }; Rdsm = derive2 { name="Rdsm"; version="2.1.1"; sha256="07fc6c2hv0vvg15va552y54cla1mrqsd75w3zh02vc7yd226l4rj"; depends=[bigmemory]; }; + Rdtq = derive2 { name="Rdtq"; version="0.1"; sha256="114pyf95nl132014ygn84xi41c2zf1ii2wfgd1acwnnmfzvdw24s"; depends=[Matrix Rcpp]; }; ReCiPa = derive2 { name="ReCiPa"; version="3.0"; sha256="019vlvgxnqqlwghxygfqggzp2b4x2pqzdrbhaa703zdhm58k0n1g"; depends=[]; }; + ReIns = derive2 { name="ReIns"; version="1.0.2"; sha256="05ipf3gvgfv3q58mdh3g9zg7z7wm0gvigb839y1nprb98wvrqj2f"; depends=[doParallel foreach Rcpp survival]; }; ReacTran = derive2 { name="ReacTran"; version="1.4.2"; sha256="1yc0k3wgg4yb6cqmjkyl25sfkbfcfxi5ria106w5jyx7dr5lfvdi"; depends=[deSolve rootSolve shape]; }; RealVAMS = derive2 { name="RealVAMS"; version="0.3-2"; sha256="0rmqy3csgfvq5c3sawvd3v37is8v5nnnrhifschqfsycmadf1gdp"; depends=[Matrix numDeriv Rcpp RcppArmadillo]; }; Rearrangement = derive2 { name="Rearrangement"; version="2.1"; sha256="0q253nj62rl65vjsq6503r80qa2j35wac8lv7ydp9w260p28z923"; depends=[quantreg]; }; - RecordLinkage = derive2 { name="RecordLinkage"; version="0.4-8"; sha256="0wjjrgmz7m11hhsw7dcg3745255xckdgrqp3xlqkyh2kzbyr9rp4"; depends=[ada data_table DBI e1071 evd ff ffbase ipred nnet rpart RSQLite xtable]; }; + RecordLinkage = derive2 { name="RecordLinkage"; version="0.4-10"; sha256="09xp0ad7v2bsg1r7gf3awdqcpds0v3ygsbnkm8ysy8w14sbrrydf"; depends=[ada data_table DBI e1071 evd ff ffbase ipred nnet rpart RSQLite xtable]; }; Records = derive2 { name="Records"; version="1.0"; sha256="08y1g2m6bdrvv4rpkhd5v2lh7vprxy9bcx9ahp1f7p062bn2lwji"; depends=[]; }; RedditExtractoR = derive2 { name="RedditExtractoR"; version="2.0.2"; sha256="1113dm41rhyimn7jc3pkrdqz3biqg5m174vz24jchhmn9n38zsss"; depends=[igraph RJSONIO]; }; + Redmonder = derive2 { name="Redmonder"; version="0.2.0"; sha256="02qrz1b0g7hdacj2s2bks5gfwnypkbiwlmn0bv7im1zz1swg9cp8"; depends=[]; }; RefFreeEWAS = derive2 { name="RefFreeEWAS"; version="2.0"; sha256="1mli7h3d4vw0sds6pav74fzpw4c3lmy7jrlp0dw47cmfxg2rhslg"; depends=[isva quadprog]; }; - RefManageR = derive2 { name="RefManageR"; version="0.10.6"; sha256="0wghxrd3ijvbzr945nbqba2cpn4vrzpny4yqlhala7fbdrd0kbbf"; depends=[bibtex lubridate plyr RCurl RJSONIO stringr XML]; }; + RefManageR = derive2 { name="RefManageR"; version="0.13.1"; sha256="1yw3fbiis1gl7ih66b4vjr299xy3w164irmmdfsqr79n9h3p5kv7"; depends=[bibtex httr lubridate plyr RCurl RJSONIO stringr XML]; }; RegClust = derive2 { name="RegClust"; version="1.0"; sha256="1d9w74phw4fgafglc18j7dpmln96fvxnf1kdc9zddgj90p8yfx63"; depends=[]; }; - RegressionFactory = derive2 { name="RegressionFactory"; version="0.7.1"; sha256="1zx885x49ncp2cl1v8hxzc3r2njka9cjsadjykbvqp9pdbm4ga5l"; depends=[]; }; + RegressionFactory = derive2 { name="RegressionFactory"; version="0.7.2"; sha256="1g23paq42xiiqavikbrflwmr8ikls9z97v1xpgg16pb88svdyayc"; depends=[]; }; RelValAnalysis = derive2 { name="RelValAnalysis"; version="1.0"; sha256="1jl1gfj44gfkmc1yp6g5wwn4miydwpvxwrg76rnkv9454zrc5pvp"; depends=[zoo]; }; - Relatedness = derive2 { name="Relatedness"; version="1.3"; sha256="0ydfv8blqy7rfczh22cs704qsl3kzwfmw4pmbhci0m212y2dgm0y"; depends=[]; }; + Relatedness = derive2 { name="Relatedness"; version="1.4"; sha256="0ahd053sbqwjq93l8m2gq7fqqc9vvgnndz4j8pmgswwcah8h77c8"; depends=[]; }; Reliability = derive2 { name="Reliability"; version="0.0-2"; sha256="12zsicgbjqih3grbs62pw37x8wlkmnyc7g0yz6bqnfb4ym2yb7fg"; depends=[]; }; ReliabilityTheory = derive2 { name="ReliabilityTheory"; version="0.1.5"; sha256="14k979b9baqnz1gbhbjnp76nvdg5z1sc6p29h3v9qgvwv4aanp4v"; depends=[actuar combinat FRACTION HI igraph mcmc PhaseType sfsmisc]; }; - Renext = derive2 { name="Renext"; version="3.0-0"; sha256="0byjr9jf2wmcg9adcxfky544icj6fclyscjj2l93ynwpcs9lmjan"; depends=[evd numDeriv]; }; - RenextGUI = derive2 { name="RenextGUI"; version="1.3-0"; sha256="0ydq57k5va1l10dxyh4hvk3r6d0wncqx9ncj5bkc5691lamqjmj4"; depends=[gWidgets gWidgetstcltk Renext]; }; + Renext = derive2 { name="Renext"; version="3.1-0"; sha256="074djs4y71667aylpgh514pzijr90rgpzm4w5ayq9cgaqz22m3am"; depends=[evd numDeriv]; }; + RenextGUI = derive2 { name="RenextGUI"; version="1.4-0"; sha256="0jfg4a85j06wxk8vq2q6j8md2kcss0s7k71218gfh9vybk7hl4h6"; depends=[gWidgets gWidgetstcltk R2HTML Renext]; }; Reol = derive2 { name="Reol"; version="1.55"; sha256="0147x3fvafc47zd2chgv3b40k480pcjpji8vm1d741i1p6ml448p"; depends=[ape RCurl XML]; }; ReorderCluster = derive2 { name="ReorderCluster"; version="1.0"; sha256="0ss750frzvj0bm1w7zblmcsjpszhnbffwlkaw31sm003lbx9hy58"; depends=[gplots Rcpp]; }; - RepeatABEL = derive2 { name="RepeatABEL"; version="1.0"; sha256="0qd6ijqfm32h87hncndv2n47rmn16gnbnkr0dg89h96xc3miyn2p"; depends=[GenABEL hglm]; }; + RepeatABEL = derive2 { name="RepeatABEL"; version="1.1"; sha256="00bq9ls4d0kczdv752xasqbavb11bjfvpriggfc8dw3g3i7pizpg"; depends=[GenABEL hglm]; }; RepeatedHighDim = derive2 { name="RepeatedHighDim"; version="2.0.0"; sha256="1n9w4jb25pm0mmsahlfhkp9jmhgp5b21l1g85gm2wbxqkjsg7g0g"; depends=[MASS nlme]; }; - ReporteRs = derive2 { name="ReporteRs"; version="0.8.6"; sha256="0j3945xgzvc9by623kfb1ds9xxsgax8yvvc78wv57lhlkzsb729l"; depends=[gdtools knitr png R_utils ReporteRsjars rJava rvg shiny xml2]; }; + ReporteRs = derive2 { name="ReporteRs"; version="0.8.8"; sha256="1pw3hy3g0nc6amga59sb1nnwqc9asdpn6lh2zfh87y8nazrf1hf0"; depends=[gdtools htmltools knitr png R_utils ReporteRsjars rJava rvg shiny xml2]; }; ReporteRsjars = derive2 { name="ReporteRsjars"; version="0.0.2"; sha256="1abvgzxipg0cgiy26z14i99qydzqva6j2v7pnrxapysg7ml5cnjc"; depends=[rJava]; }; ResistorArray = derive2 { name="ResistorArray"; version="1.0-28"; sha256="055zr4rybgrvg3wsgd9vhyjpvzdskrlss68r0g7rnj4yxkix0kxz"; depends=[]; }; - ResourceSelection = derive2 { name="ResourceSelection"; version="0.2-6"; sha256="0ysssac4f5xdpr3wk1d36dpqbzxabw49flm2yiifpfwzqgwz4r5c"; depends=[MASS pbapply]; }; - RevEcoR = derive2 { name="RevEcoR"; version="0.99.2"; sha256="100sman51vvwg5xkypmksyyjqdb6g858z29vn7x4kvly8ncw4hfd"; depends=[gtools igraph magrittr Matrix plyr stringr XML]; }; - Rfacebook = derive2 { name="Rfacebook"; version="0.6.3"; sha256="1whhrg2w7g1j6p5rhk3zqvigbjdwy3p7c094lmj1c42p4607nc52"; depends=[httpuv httr rjson]; }; - Rfit = derive2 { name="Rfit"; version="0.22.0"; sha256="1qnfm2p8xqz45ma53fl9ddagj5spfl8i9sxvn3rq19dgkwbdhqw2"; depends=[quantreg]; }; + ResourceSelection = derive2 { name="ResourceSelection"; version="0.3-1"; sha256="1x7kc0zh22pqi7dw4iav9dac8wpj491lpqbnaqfncyhswpdkimvi"; depends=[MASS Matrix pbapply]; }; + RevEcoR = derive2 { name="RevEcoR"; version="0.99.3"; sha256="1nym263ynjdir5kxv35jnmki9mshlplq0sk3xnjd4ac6f1cfbfqj"; depends=[gtools igraph magrittr Matrix plyr purrr stringr XML]; }; + Rexperigen = derive2 { name="Rexperigen"; version="0.2.1"; sha256="158ksnd1gvzq7ii0ys2v0wrfnr001hni0i8m77p1fn1arixgmqdw"; depends=[digest jsonlite RCurl]; }; + Rfacebook = derive2 { name="Rfacebook"; version="0.6.11"; sha256="1si21in7ykv4532xsz12v9nwzfj142bnbf14qc74fbp1p087k6c0"; depends=[httpuv httr rjson]; }; + Rfast = derive2 { name="Rfast"; version="1.7.4"; sha256="1yrg3iflppbpjmw8rah4jdgwksnqplc0l3ds492s9zrw51vxz38c"; depends=[Rcpp RcppArmadillo RcppZiggurat]; }; + Rfit = derive2 { name="Rfit"; version="0.23.0"; sha256="1gxxipbh7mskrqwrpk1gf1dn8mp3l1v4hgmzii44bppffnxs7slp"; depends=[]; }; Rfmtool = derive2 { name="Rfmtool"; version="1.2"; sha256="1q359574fspwxy1lmlzfqk0cg3qih8jzh3rk74qr22jw0sp7bcyw"; depends=[]; }; + Rga4gh = derive2 { name="Rga4gh"; version="0.1.1"; sha256="0h5y722blkkwn6ask6vjnhl22v9l6511chdm50ig6xcs5dvjam2m"; depends=[httr jsonlite]; }; Rgbp = derive2 { name="Rgbp"; version="1.1.1"; sha256="14xban9d182fhss9ppr13scih7hrbjd9s231avi4gkg79cz87s0s"; depends=[mnormt sn]; }; - Rglpk = derive2 { name="Rglpk"; version="0.6-1"; sha256="011l60571zs6h8wmv4r834dg24knyjxhnmxc7yrld3y2qrhcl714"; depends=[slam]; }; + Rglpk = derive2 { name="Rglpk"; version="0.6-2"; sha256="1dzcc9dwdvrs1g9mgk5z9qdxn3iq04s91ak881z3wrqvxhp42cgr"; depends=[slam]; }; Rgnuplot = derive2 { name="Rgnuplot"; version="1.0.3"; sha256="0mwpq6ibfv014fgdfsh3wf8yy82nzva6cgb3zifn3k9lnr3h2fj7"; depends=[]; }; - RgoogleMaps = derive2 { name="RgoogleMaps"; version="1.2.0.7"; sha256="04k7h8hgxvgsccdiysbblplwjvn8m7g8h3anzdlxmmjaamd8l9lw"; depends=[png RJSONIO]; }; + RgoogleMaps = derive2 { name="RgoogleMaps"; version="1.4.1"; sha256="0fsmlnhl4kw2j4972kfanzw9njhnzk695gsyw8g6yppsmz2clcaq"; depends=[png]; }; Rhpc = derive2 { name="Rhpc"; version="0.15-244"; sha256="1y83sshzsmsnm1m341x0ymmyz87dc5cjkbnr0v975p292rjqz3pd"; depends=[]; }; RhpcBLASctl = derive2 { name="RhpcBLASctl"; version="0.15-148"; sha256="1carylfz9gafradbdyg7fz2bypr7n72fbm8vhyiinmp0k4s5ipvc"; depends=[]; }; RidgeFusion = derive2 { name="RidgeFusion"; version="1.0-3"; sha256="10llmrsfpcqrkcbw7zj44kvfy7ywn9rk49n7zplilz8h94zzcmjv"; depends=[mvtnorm]; }; Ridit = derive2 { name="Ridit"; version="1.1"; sha256="02cni6hzf1bsns7vi8vklnhc0pfb5vwqhjnnfnjnnaxpzpsbvdfn"; depends=[]; }; Rip46 = derive2 { name="Rip46"; version="1.0.2"; sha256="0wfp6fm5mgmjqjkn0c5hvjd95yn4zcv0s8xc5294qf5jqxp8b1w7"; depends=[Rcpp]; }; - Ritc = derive2 { name="Ritc"; version="1.0.1"; sha256="1h41s4jihzj0yj8xyan0zhhyyiq8m5567vw4gvmmr81p1qfzvva8"; depends=[minpack_lm]; }; + RiskPortfolios = derive2 { name="RiskPortfolios"; version="2.1.1"; sha256="1kn0vb4nhm3bxlmk5y2nl5m7a7hdvz3nz0yp8rdigpl6b2dp79w1"; depends=[MASS nloptr quadprog]; }; + Ritc = derive2 { name="Ritc"; version="1.0.2"; sha256="03smhxjhjfkc9pxhlgg54b6v2jznpmnws8373qpvn9a9ky5bcq2l"; depends=[minpack_lm]; }; Rivivc = derive2 { name="Rivivc"; version="0.9"; sha256="0gl3040pp9nqm4g2ympnx80z64zfnn1hfsxka8ynd2cqhjn3b5i1"; depends=[signal]; }; Rjpstatdb = derive2 { name="Rjpstatdb"; version="0.1"; sha256="0iwgsp3mblp7bsx88wfpqn09y1xrkingfkm3z9jsi2bwrnrjc2iv"; depends=[RCurl XML]; }; - Rknots = derive2 { name="Rknots"; version="1.3.1"; sha256="0yv8k85jzviz3gafbwggn1y4vlcjnfdiyf93gi6yvygdnsnrq310"; depends=[bio3d rgl rSymPy]; }; + Rknots = derive2 { name="Rknots"; version="1.3.2"; sha256="1krhma8hy3l5lbm6d8rxjlj9jw1zrd16h4wy4p1clfa5vlhh3bwi"; depends=[bio3d rgl rSymPy]; }; Rlab = derive2 { name="Rlab"; version="2.15.1"; sha256="1pb0pj84i1s4ckdmcglqxa8brhjha4y4rfm9x0na15n7d9lzi9ag"; depends=[]; }; - Rlabkey = derive2 { name="Rlabkey"; version="2.1.129"; sha256="188h3j9hlx6ls0rs0f5n05l8d8l556dp49b93c77nw6bp7n4745l"; depends=[RCurl rjson]; }; + Rlabkey = derive2 { name="Rlabkey"; version="2.1.133"; sha256="1lvik88zfxlipr24qdj04faknfjsaiv6q75zllgz3v6rjbxvh4jz"; depends=[fasttime Rcpp RCurl rjson]; }; Rlibeemd = derive2 { name="Rlibeemd"; version="1.3.7"; sha256="0k2snw8a6h4dvbpl97fklvvbbqma4g9r0ksvh5ndyk4vqwyxy1na"; depends=[Rcpp]; }; - Rlinkedin = derive2 { name="Rlinkedin"; version="0.1"; sha256="0w30zv4a842vckk4yqsh8hhkdz2gy650a0x29aacp77p9y79g9yn"; depends=[httpuv httr XML]; }; + Rlinkedin = derive2 { name="Rlinkedin"; version="0.2"; sha256="15sbiis1d0s466nqk1adjhflb01sb9kn25f4y6sagkdggvyz6b56"; depends=[httpuv httr XML]; }; Rlof = derive2 { name="Rlof"; version="1.1.1"; sha256="1px6ax2mr2agbhv41akccrjdrvp8a9lmhymp0cn8fjrib0ig8vql"; depends=[doParallel foreach]; }; - Rmalschains = derive2 { name="Rmalschains"; version="0.2-2"; sha256="1ki3igj78sk4kk1cvbzrgzjdvw6kbdb7dmqglh6ws2nmr5b6a7fx"; depends=[Rcpp]; }; + Rmalschains = derive2 { name="Rmalschains"; version="0.2-3"; sha256="1gh0f385s1nq12mk6a5l3nj1gd2mc6jzd66lisnxbcip25s4b8pb"; depends=[Rcpp]; }; + RmarineHeatWaves = derive2 { name="RmarineHeatWaves"; version="0.15.1"; sha256="1r8hyvm680fcw0qq1k5i3wachy6xnl86vvaf3vz5hrq789x4xkh5"; depends=[dplyr ggplot2 lazyeval lubridate magrittr plyr raster tidyr zoo]; }; Rmisc = derive2 { name="Rmisc"; version="1.5"; sha256="1ijjhfy3v91fspid77rrkc5dkcb2lav37wc3f4k5lwrn24wzy5y8"; depends=[lattice plyr]; }; - Rmixmod = derive2 { name="Rmixmod"; version="2.0.3"; sha256="0pxblg2si289599807hgcncq9jypabbrfpmv7fyg9hh7d8y19hd7"; depends=[Rcpp]; }; + Rmixmod = derive2 { name="Rmixmod"; version="2.1.1"; sha256="1m5yab7wq343bzg8xszbrlif3cd4d1x7xcqh82czkxbfni1gz7j7"; depends=[Rcpp]; }; RmixmodCombi = derive2 { name="RmixmodCombi"; version="1.0"; sha256="0cwcyclq143938wby0aj265xyib6gbca1br3x09ijliaj3pjgdqi"; depends=[Rcpp Rmixmod]; }; - Rmonkey = derive2 { name="Rmonkey"; version="0.3.1"; sha256="14x076qhcbil7v1bh5x3zivqg04svcb7fvap47kcp3g95dk9jvxa"; depends=[curl httr jsonlite plyr]; }; Rmosek = derive2 { name="Rmosek"; version="1.2.5.1"; sha256="0zggv699s93i9g98qjs4ci2nprgfkzq45lpzgrbhldsxiflf27gz"; depends=[Matrix]; }; - Rmpfr = derive2 { name="Rmpfr"; version="0.6-0"; sha256="06i5jzsddvync284ql16vlk439jp7la6n6yfgyxpck818hidz8a3"; depends=[gmp]; }; - Rmpi = derive2 { name="Rmpi"; version="0.6-5"; sha256="0i9z3c45jyxy86yh3f2nja5miv5dbnipm7fpm751i7qh630acykc"; depends=[]; }; + Rmpfr = derive2 { name="Rmpfr"; version="0.6-1"; sha256="073f01wga1ccxxgspsprjqdmb84iiap13mqhl7b6qcz9al89jl5z"; depends=[gmp]; }; + Rmpi = derive2 { name="Rmpi"; version="0.6-6"; sha256="184skad8m4y4pzk8v98b7k7prqxm9mg1b2pfxbknyvzakq6aizv1"; depends=[]; }; RnavGraph = derive2 { name="RnavGraph"; version="0.1.8"; sha256="1fwzfy41gdr1aw1wg6dw04mxwwpp5s9x2inxyq3bc9s8bm1rlxih"; depends=[graph rgl scagnostics]; }; RnavGraphImageData = derive2 { name="RnavGraphImageData"; version="0.0.3"; sha256="1mrh0p2ckczw4xr1kfmcf0ri2h2fhp7fmf8sn2h1capmm12i1q8f"; depends=[]; }; - RobAStBase = derive2 { name="RobAStBase"; version="0.9"; sha256="1428xaplcjq6r0migbaqncfj0iz8hzzfabmabm167p44wa2bwbwh"; depends=[distr distrEx distrMod RandVar rrcov]; }; - RobLox = derive2 { name="RobLox"; version="0.9"; sha256="1ws6bkzvg1y1cwmls71das0lih6gncx5w3ncd2siznapd4n44p69"; depends=[Biobase distr distrMod lattice RandVar RColorBrewer RobAStBase]; }; + RndTexExams = derive2 { name="RndTexExams"; version="1.4"; sha256="18zmdfq234k4bjj5rz6zjlkiyndbj5v2irjfl3w66vz38lk8sf6v"; depends=[CopyDetect data_table stringi stringr]; }; + RobAStBase = derive2 { name="RobAStBase"; version="1.0"; sha256="0s8hgvgqm6hf1nbhq1kj239f7zpchvzhds8281nfzlm5qzphylqj"; depends=[distr distrEx distrMod RandVar rrcov startupmsg]; }; + RobAStRDA = derive2 { name="RobAStRDA"; version="1.0.2"; sha256="1lyp2y38jnwv8ggrv9pdzprpf2gs62w1mpzwcqcbrmy7fzjsym0b"; depends=[]; }; + RobLox = derive2 { name="RobLox"; version="1.0"; sha256="0y193xai0mfwpm6zhxgy21h4yrlqrpvwx84bj4xnr8ql87wznh7q"; depends=[Biobase distr distrMod lattice RandVar RColorBrewer RobAStBase]; }; RobLoxBioC = derive2 { name="RobLoxBioC"; version="0.9"; sha256="0ia7vn8x8whyp8kl7mpwd6fd0yv0y3pb1mppnh2329x7xdvcs5j4"; depends=[affy beadarray Biobase BiocGenerics distr lattice RColorBrewer RobLox]; }; - RobPer = derive2 { name="RobPer"; version="1.2.1"; sha256="1impcp2yfxxh439a70s2gqwfng6cgi123y20fd01b84jkp9gx3hi"; depends=[BB quantreg rgenoud robustbase]; }; + RobPer = derive2 { name="RobPer"; version="1.2.2"; sha256="0631qfpz61606r50vzn7b3h7arfwxcs8j13q1hg779qx60kwrliy"; depends=[BB quantreg rgenoud robustbase]; }; RobRSVD = derive2 { name="RobRSVD"; version="1.0"; sha256="07z5fw8j5lq7nyxgkvb9i4iwb5inddz2ib4m2bjx6q4c1ricpqz9"; depends=[]; }; RobRex = derive2 { name="RobRex"; version="0.9"; sha256="0ii539mjq462n1lbnyv3whl8b1agvhvlz31wwyz911gb40isl639"; depends=[ROptRegTS]; }; RobustAFT = derive2 { name="RobustAFT"; version="1.4-1"; sha256="180gmlinrpnk4ghl1xickbjkdqr7vb6qzmy6701xpji5k8g9il60"; depends=[robustbase survival]; }; RobustEM = derive2 { name="RobustEM"; version="1.0"; sha256="1li9r3bk7zhpxljgqvr2zila8nb05nasvlzqlswwgi9443i740zi"; depends=[doParallel e1071 ellipse foreach ggplot2 mvtnorm]; }; + RobustGaSP = derive2 { name="RobustGaSP"; version="0.5.3"; sha256="1kzi5mvz78gxwrg1z822pkqzmqwvw73x2gh2yfsaxcwy2d7nr2mx"; depends=[Rcpp RcppEigen]; }; RobustRankAggreg = derive2 { name="RobustRankAggreg"; version="1.1"; sha256="1pslqyr1lji1zvcrwyax4zg2s81p1jnhfldz8mdfhsp5y7v8iar3"; depends=[]; }; RockFab = derive2 { name="RockFab"; version="1.2"; sha256="1b5mhfll5vmqwl4pblmclyx9604vn07jyza02rm0jcsx915ms8sc"; depends=[EBImage rgl]; }; + Rodam = derive2 { name="Rodam"; version="0.1.2"; sha256="0fxsjzillr2v3sxbph13q3wrly6dx6m8rm276qzfvx1md044z14y"; depends=[RCurl]; }; Rook = derive2 { name="Rook"; version="1.1-1"; sha256="00s9a0kr9rwxvlq433daxjk4ji8m0w60hjdprf502msw9kxfrx00"; depends=[brew]; }; RootsExtremaInflections = derive2 { name="RootsExtremaInflections"; version="1.0"; sha256="1vcbjxx1yfla71fmmf5w8dqp0vqw93dxsjsvz0vj28bfqmkmh554"; depends=[]; }; - Rothermel = derive2 { name="Rothermel"; version="1.2"; sha256="0zrz2ck3q0vg0wpa4528rjlrfnvlyiy0x1gr5z1aax1by7mdj82s"; depends=[GA]; }; + Rothermel = derive2 { name="Rothermel"; version="1.2"; sha256="0zrz2ck3q0vg0wpa4528rjlrfnvlyiy0x1gr5z1aax1by7mdj82s"; depends=[ftsa GA]; }; RoughSetKnowledgeReduction = derive2 { name="RoughSetKnowledgeReduction"; version="0.1"; sha256="0zn6y2rp78vay9zwijpzhjpyq1gmcsa13m9fcsxkd1p2c8g5rbmf"; depends=[]; }; RoughSets = derive2 { name="RoughSets"; version="1.3-0"; sha256="08yz19ngipqpzfam6ivwsfnbg8ps2wwyi6djprmd7kfj0n43ab62"; depends=[Rcpp]; }; Rpdb = derive2 { name="Rpdb"; version="2.2"; sha256="0gf6qab05a3ky8skbbjiadizi1gs4pcw3zp25qj5gn82lb6382pd"; depends=[rgl]; }; + RpeakChrom = derive2 { name="RpeakChrom"; version="0.1.0"; sha256="0l7lgscj2lsbm2k1lmzwc15k533hkqz5yhyzz6m2ngg6qf8fhsy3"; depends=[ggplot2 minpack_lm pracma ptw]; }; Rphylip = derive2 { name="Rphylip"; version="0.1-23"; sha256="0kpqmik4bhr74ib8yvaavr10z4v4w3li5vibdhz7lvz35jfirg9r"; depends=[ape]; }; - Rphylopars = derive2 { name="Rphylopars"; version="0.2.1"; sha256="1407p6j6w41wg7apmjzl5xgjch97glqwn9pw0w95xz14ldnn8dk8"; depends=[ape doBy geiger Matrix mvnmle phylolm phytools Rcpp RcppArmadillo]; }; - Rpoppler = derive2 { name="Rpoppler"; version="0.0-1"; sha256="01zsbm538yhwm1cyz5j6x2ngz05yqj16yxyvyxqhn6jp8d0885jh"; depends=[]; }; - Rquake = derive2 { name="Rquake"; version="2.3-1"; sha256="0xb8j76jjv6k3r8nzjxdddic4rq1yj7qsh85asl38qwj7483cyc4"; depends=[cda GEOmap MBA minpack_lm rgl RPMG RSEIS]; }; + Rphylopars = derive2 { name="Rphylopars"; version="0.2.9"; sha256="19y0j5vh82sa9jigylxhv0s0hgjyhx3xq4blvk55jhpj8v7iyiky"; depends=[ape doBy geiger MASS Matrix mvnmle phylolm phytools Rcpp RcppArmadillo]; }; + Rpoppler = derive2 { name="Rpoppler"; version="0.0-3"; sha256="055ldafgf0lp3g2kjlpbhsq03fwwia6a6fwk7d4w5znihah9ibbg"; depends=[]; }; + Rquake = derive2 { name="Rquake"; version="2.4-0"; sha256="14s2mjq9qqxfvlwmq9126h67y5wr7irlc7945pgv1ab9hl1lgmz8"; depends=[GEOmap MBA minpack_lm rgl RPMG RSEIS]; }; Rramas = derive2 { name="Rramas"; version="0.1-4"; sha256="191rm2ylvf3ffc9i4wpjvfbsinmw7s1m0wcq24j4qs4fxg8qqzyq"; depends=[diagram]; }; Rrdrand = derive2 { name="Rrdrand"; version="0.1-14"; sha256="18ry07pi9iwskbxcimvp91fgpvrlaf44z0hp7k90dnyaa8qpbwjx"; depends=[]; }; Rsampletrees = derive2 { name="Rsampletrees"; version="0.1"; sha256="02wh99nxlhyrivr655825nqcl3w0mvppnmvc9yrkdbkjw0l1zsjd"; depends=[ape haplo_stats]; }; + Rsampling = derive2 { name="Rsampling"; version="0.1.1"; sha256="14rp3j7iaii4rc3jkbijmbgvlagxxqjkz3vvfwwpxix43rsi8zsk"; depends=[]; }; Rserve = derive2 { name="Rserve"; version="1.7-3"; sha256="09rha4p86vak7ss721mwp5bm5ig09xam8zlqv63n9wf36v3kdmpn"; depends=[]; }; RsimMosaic = derive2 { name="RsimMosaic"; version="1.0.2"; sha256="0d5z5dffi2prz0r31x08c8gw83448bhkma5mzcmrdlg6kx5y7dp8"; depends=[fields jpeg RANN]; }; Rsolnp = derive2 { name="Rsolnp"; version="1.16"; sha256="0w7nkj6igr0gi7r7jg950lsx7dj6aipgxi6vbjsf5f5yc9h7fhii"; depends=[truncnorm]; }; - Rsomoclu = derive2 { name="Rsomoclu"; version="1.6"; sha256="105isq1c1spwska886phi7dzp6qzifzvvy1r8gqlbv9v6lbgxshf"; depends=[class kohonen Rcpp]; }; - Rssa = derive2 { name="Rssa"; version="0.13-1"; sha256="1v2gvk7pnzf2s2z0y7shjf0mz558lb6ian7vljkjcag06pyygmvi"; depends=[forecast lattice svd]; }; + Rsomoclu = derive2 { name="Rsomoclu"; version="1.7.2"; sha256="0b063b9jwnn7mansm5mbgqcfk8p596inf7l3r6fafvsjw5844b6l"; depends=[class kohonen Rcpp]; }; + Rssa = derive2 { name="Rssa"; version="0.14"; sha256="0r51jw7fl0nxmly05dj85chw804vf8gmrkfs6yi59zh7fq7jsis6"; depends=[forecast lattice svd]; }; Rsundials = derive2 { name="Rsundials"; version="1.6"; sha256="0vrvxsznbclgls4jljc59lyli6cw9k1a3wapfrs6xbkqi8865iif"; depends=[]; }; - Rsurrogate = derive2 { name="Rsurrogate"; version="1.0"; sha256="0s7f86cf2b3mwzwpfpl8cd1g41c8g5hzkykj9qigy1grnf37crvf"; depends=[]; }; - Rsymphony = derive2 { name="Rsymphony"; version="0.1-21"; sha256="0wjj1wlh45fhgbzfqh0rdxrahc68w1gkvzx6kx46m6ww7k6l3pqb"; depends=[]; }; - Rtsne = derive2 { name="Rtsne"; version="0.10"; sha256="14270gg0fp3imq9rafqj56ld56kzby7yyf5rg9z0wlimm7s72hy5"; depends=[Rcpp]; }; - Rttf2pt1 = derive2 { name="Rttf2pt1"; version="1.3.3"; sha256="16bnhrg86rzi4g4zf235m1g8amyhcwxpw0wgcxynfiinm2fl4y1n"; depends=[]; }; + Rsurrogate = derive2 { name="Rsurrogate"; version="2.0"; sha256="1pjyhlxqi8mcbywa7qa1vxgxr5jca0nc9vm1bx53vr231wgnb7gf"; depends=[survival]; }; + Rsymphony = derive2 { name="Rsymphony"; version="0.1-26"; sha256="0v51sjhggvl8i3ysslqcc4x84874nagxq2v68izs4hpvcpzn7268"; depends=[]; }; + Rtauchen = derive2 { name="Rtauchen"; version="1.0"; sha256="09282k6qsjxgm26682npfjymmbx5g8flcc44awmkjl2k4fa1q9ha"; depends=[]; }; + Rtextrankr = derive2 { name="Rtextrankr"; version="1.0.0"; sha256="16dby3xsfcjyp35xdflmgnh7zkqygfbffvj4jqa565vj9ksnq5ir"; depends=[igraph KoNLP sets stringi]; }; + Rtnmin = derive2 { name="Rtnmin"; version="2016-7.7"; sha256="0f8ii87v29v61b93hx2yxdppp3nvgnl5imp80sbb4bjsdg0mf989"; depends=[]; }; + Rtsne = derive2 { name="Rtsne"; version="0.11"; sha256="0zi4nxgpiv1gpdmcnqdhz5kymzp8m5xj02zpf290p1yyydl76bhy"; depends=[Rcpp]; }; + Rttf2pt1 = derive2 { name="Rttf2pt1"; version="1.3.4"; sha256="19wcjgcv871vzclgskvb7xywnzvvi9v5k0qhwxwwi3qc9yx2kpaq"; depends=[]; }; Rtts = derive2 { name="Rtts"; version="0.3.3"; sha256="0jphdpnpbq0d48kzflilxlh6psk282hi1hz3rmnwnd0rx5iyg624"; depends=[RCurl]; }; - RtutoR = derive2 { name="RtutoR"; version="0.1"; sha256="1a27kmasrdy06m0gh11pggx46f049f268hn0s651zb1hr8n3h5mi"; depends=[dplyr DT ggplot2 rmarkdown shiny shinydashboard]; }; + RtutoR = derive2 { name="RtutoR"; version="0.3"; sha256="0knqwk44di24x8w2pf794hk2raq7gcpl6cd6s9m0sr73rxh9sf11"; depends=[dplyr DT ggplot2 ggthemes plotly rmarkdown shiny shinyBS shinydashboard shinyjs]; }; Rtwalk = derive2 { name="Rtwalk"; version="1.8.0"; sha256="0zxf66lsfq8by40flv34xzd5yy0wa1ah9li1d0h7f0yh9nbwhxl5"; depends=[]; }; Ruchardet = derive2 { name="Ruchardet"; version="0.0-3"; sha256="0dgldi6fgp949c3455m9b4q6crqv530jph210xzph41vgw8a2q2v"; depends=[Rcpp]; }; Runiversal = derive2 { name="Runiversal"; version="1.0.2"; sha256="0667mspsjydmxi848c6wsf14gz72bmdj9b3lilma92b7fhqnv7ai"; depends=[]; }; Runuran = derive2 { name="Runuran"; version="0.23.0"; sha256="1qkml3n0h1z59085spla0ry1wl42c1ljg9nh2sxv6mnhxygm6aq1"; depends=[]; }; RunuranGUI = derive2 { name="RunuranGUI"; version="0.1"; sha256="0wm91mzgd01qjinj94fr53m0gkxjvx7yjhmwbkrxsjn6mjklq72l"; depends=[cairoDevice gWidgets gWidgetsRGtk2 Runuran rvgtest]; }; - Rvcg = derive2 { name="Rvcg"; version="0.13.1.2"; sha256="1xlf26qzp8x6shcvxa5ka5c0hgbmv2ma1raj2a25ginmq28ld4ms"; depends=[Rcpp RcppEigen]; }; + Rvcg = derive2 { name="Rvcg"; version="0.15"; sha256="0h0gl6s7xa96g91d0df08ssgr1hnxgc1pqrlirvjdknr7jpkq04k"; depends=[Rcpp RcppArmadillo RcppEigen]; }; Rvmmin = derive2 { name="Rvmmin"; version="2013-11.12"; sha256="1ljzydvizbbv0jv5lbfinypkixfy7zsvplisb866f8w45amd152a"; depends=[optextras]; }; Rwave = derive2 { name="Rwave"; version="2.4"; sha256="1ynj6higx0j6iv033lx8h3i9hlg5b53nl2gv6fwjny4ygm8b1mjm"; depends=[]; }; Rwinsteps = derive2 { name="Rwinsteps"; version="1.0-1"; sha256="0kzngkan9vydibnr3xm4pyz4v6kz0r4h19f0ngqpri07fkhdsxzd"; depends=[]; }; RxCEcolInf = derive2 { name="RxCEcolInf"; version="0.1-3"; sha256="04d6ffl4qs2vjbk0ibvyq17i2l26qnvxr72s6p3f8q4px33rh4kh"; depends=[lattice MASS MCMCpack mvtnorm]; }; - RxODE = derive2 { name="RxODE"; version="0.5-1"; sha256="00s9pb1gx61prbymxdq470s3lv2vd9xdpbp51b0gq3g9kpl7g21i"; depends=[]; }; + RxODE = derive2 { name="RxODE"; version="0.5-5"; sha256="1rh25vjy8pnaavz9df6bcmk9b8d72hxm73n1hg3ha724cyxypzpa"; depends=[]; }; RxnSim = derive2 { name="RxnSim"; version="1.0.1"; sha256="17agz3kw7pj4mpl25y1n8l9lqfj63wn70rqpdkcpnx7j6s6933vx"; depends=[data_table fingerprint rcdk rJava]; }; - Ryacas = derive2 { name="Ryacas"; version="0.2-12.1"; sha256="18dpnr6kj0a8f2jcbj9f6ahd0mg7bm1qm8dcs1wh8kmjl3klr1y8"; depends=[XML]; }; + Ryacas = derive2 { name="Ryacas"; version="0.3-1"; sha256="13qvd5gpdrjgzf6isk3529khd02852y3ajmpp5vl8vn9k1jxp86v"; depends=[Rcpp XML]; }; Rz = derive2 { name="Rz"; version="0.9-1"; sha256="1cpsmfxijrfx06ydpjzbaak7gkad4jjk1ph9453l9zly1cwzgspj"; depends=[foreign formatR ggplot2 memisc psych RGtk2]; }; S2sls = derive2 { name="S2sls"; version="0.1"; sha256="0qq1rff2cdgrm5rj69jxgrl71i0wmzyn424fdvcg02zdv9ggqhd3"; depends=[spanel]; }; - SACCR = derive2 { name="SACCR"; version="1.5"; sha256="101rki50m7kb0h17nrhm5pwjcm1c6ldynili69my1hqkymzwd51x"; depends=[]; }; + SACCR = derive2 { name="SACCR"; version="2.1"; sha256="184mw9q25b06zar4ii3na7c4x28ly922d5csfqkw9b07mdp81k3h"; depends=[data_tree jsonlite Trading]; }; SACOBRA = derive2 { name="SACOBRA"; version="0.7"; sha256="12aj4ghs3i3ks749z0l95ipv8gi33xgggkyjf21zvnzmb1dgphys"; depends=[testit]; }; + SADEG = derive2 { name="SADEG"; version="1.0.0"; sha256="02ilykbdanx1isbd80c43hqpzkckq6dg40y0rklcnck6v96qky3n"; depends=[]; }; SAENET = derive2 { name="SAENET"; version="1.1"; sha256="13mfmmjqbkdr6j48smdlqvb83dkb34kx3i16gx0gmmafk3avdaxx"; depends=[autoencoder neuralnet]; }; SAFD = derive2 { name="SAFD"; version="1.0-1"; sha256="1h9hw66irq2c1ciz502r5h8h9hx32jwhrp9dwl91qlknlj6s1bxr"; depends=[]; }; SAGA = derive2 { name="SAGA"; version="2.0.0"; sha256="022q8hagc38mfakh02cyvf49as2rps1my9iy2xcg8qhrr2czzmy8"; depends=[plotrix viridis]; }; SALES = derive2 { name="SALES"; version="1.0.0"; sha256="1kjmlwa4v2i7hzm947xby9jr0irsf4c851f7jyqyhqna9c65rx0g"; depends=[Matrix]; }; SALTSampler = derive2 { name="SALTSampler"; version="0.1"; sha256="1ys88fgsx92b50x5y8xb0gp03spj0d29nqgw91yl95qwkg0d6bsg"; depends=[lattice]; }; SAM = derive2 { name="SAM"; version="1.0.5"; sha256="1fki43bp6kan6ls2rd6vrp1mcwvz92wzcr7x6sjirbmr03smcypr"; depends=[]; }; + SAMM = derive2 { name="SAMM"; version="0.0.1"; sha256="1yyqci1c0xk5pqi09v3b7p5y0dwbrg1wlsyscfnw6qxwr707y23j"; depends=[Rcpp RcppArmadillo]; }; SAMUR = derive2 { name="SAMUR"; version="0.6"; sha256="0iyv7ljjrgakgdmpylcxk3m3xbm2xwc6lbjvl7sk1pmxvpx3hhhc"; depends=[Matching]; }; SAMURAI = derive2 { name="SAMURAI"; version="1.2.1"; sha256="02fipbjcsbp2b2957x6183z20icv1yly2pd1747nyww9bmpa7ycm"; depends=[metafor]; }; - SAPP = derive2 { name="SAPP"; version="1.0.4"; sha256="0a86vz390v2g5lz1r33qrmhgvak4rpfmpxy39shnivhagnrsarkl"; depends=[]; }; + SAPP = derive2 { name="SAPP"; version="1.0.7"; sha256="0rms9kq87dypdfs248m4393lgpfx37qah0n1s109pfnjh3k64pm3"; depends=[]; }; + SARP_moodle = derive2 { name="SARP.moodle"; version="0.3.6"; sha256="0mm3dls9w9q060pylrkl3zwzix9zprpljajfm6z8k5bbhha1qsbc"; depends=[]; }; SASPECT = derive2 { name="SASPECT"; version="0.1-1"; sha256="1d3yqxg76h9y485pl5mvlx6ls1076f80b320yvx4zxmqq9yxmaba"; depends=[]; }; SAScii = derive2 { name="SAScii"; version="1.0"; sha256="0nq859xmrvpbifk8q1kbx3svg61rqdg8p8gr1pn85fr0j3w7h666"; depends=[]; }; SASmixed = derive2 { name="SASmixed"; version="1.0-4"; sha256="0491x4a3fwiy26whclrc19alcdxccn40ghpsgwjkn9sxi8vj5wvm"; depends=[]; }; @@ -2258,45 +2773,51 @@ in with self; { SAVE = derive2 { name="SAVE"; version="1.0"; sha256="1m9rrga8x00hlvn0c1jcz6yz14pdm6h3dq14905mq49sw63c7zll"; depends=[coda DiceKriging]; }; SBRect = derive2 { name="SBRect"; version="0.26"; sha256="16g0ciy9q9irypsl8x36i0lavl41j3af13r2si0by8q6wj56pxi4"; depends=[rJava]; }; SBSA = derive2 { name="SBSA"; version="0.2.3"; sha256="1v23lzzziyjlvgn5p2n1qcq2zv9hsyz2w15lbnfi5wvinxhlg8sc"; depends=[Rcpp RcppArmadillo]; }; - SCBmeanfd = derive2 { name="SCBmeanfd"; version="1.1"; sha256="0pcyrnzlnlyn4v3lyv7pv01v2lh4vig1x4x8g98lpccpi1bimd4z"; depends=[boot KernSmooth]; }; + SCBmeanfd = derive2 { name="SCBmeanfd"; version="1.2.2"; sha256="045498q71zqgcg8p3665vwd99a8ybf21y0sa7y8316zw66wb1caz"; depends=[boot KernSmooth]; }; SCEPtER = derive2 { name="SCEPtER"; version="0.2-1"; sha256="19sphwcsj2z05dvpmz7vgxykzyghkfn79jwqvk6d66daman679mv"; depends=[MASS]; }; SCEPtERbinary = derive2 { name="SCEPtERbinary"; version="0.1-1"; sha256="0rab0widfndx94dn1nchhs06q0d57vq2n3xy79p130l9rgp9v489"; depends=[MASS SCEPtER]; }; SCGLR = derive2 { name="SCGLR"; version="2.0.3"; sha256="03v76nh6ng41hh4lm27r8ipf382sj98dyl9lh4fzl4y6ff1vwzzj"; depends=[expm Formula ggplot2 Matrix pROC scales]; }; - SCI = derive2 { name="SCI"; version="1.0-1"; sha256="1m5a15a4n0zjqykq38pyw9133g2ih4ykbgak8c8khq8p0isnl8qb"; depends=[fitdistrplus lmomco]; }; + SCI = derive2 { name="SCI"; version="1.0-2"; sha256="1jvzkdv15ifgf6a3zjfzzcgw2y2vg0wp7yhiamiaqp8xkm142w49"; depends=[fitdistrplus lmomco]; }; SCMA = derive2 { name="SCMA"; version="1.1.1"; sha256="1jbx4fkixm31zdlfx65xxdzpf77dzpqazy1l6qyjz7q672s2vidd"; depends=[]; }; SCORER2 = derive2 { name="SCORER2"; version="0.99.0"; sha256="1a28wga69ip9s98ch2dqgl0qkwa3w6frmaqcvhclc360ik813mxq"; depends=[]; }; + SCRSELECT = derive2 { name="SCRSELECT"; version="1.1-0"; sha256="1mf11xxzi6g0cs91l6a0b9dic3a737ckxwrrbxk3m2cz6ymy5k9r"; depends=[mvtnorm]; }; SCRT = derive2 { name="SCRT"; version="1.1.1"; sha256="02sndf5r1y27pgkw4wd9bhz7jhzk3cv78hp3xl222phjznjf2lzi"; depends=[]; }; SCVA = derive2 { name="SCVA"; version="1.1.1"; sha256="1n660pml288ia4x18kjbrcx0n1cnasdxhl6pymh1nzxm4ai2hinc"; depends=[]; }; SCperf = derive2 { name="SCperf"; version="1.0"; sha256="1v9l7d9lil2gy5bw6i7bzc24808m063xaw2spl005j0a9rh4ag41"; depends=[]; }; SDD = derive2 { name="SDD"; version="1.2"; sha256="0wzgm1hgjv5s00bpd7j387qbvn5zvyrrd5fr2rgyll4cw9p4sd33"; depends=[Hmisc rgl rpanel sm tseries]; }; SDDE = derive2 { name="SDDE"; version="1.0.1"; sha256="14vql1bypn409w9xcx1jdzff6apiagcz2wng3y24h3mk7yjv9bzy"; depends=[doParallel foreach igraph iterators]; }; + SDEFSR = derive2 { name="SDEFSR"; version="0.7.1.0"; sha256="1pknkda7iaq5247557b93kc3cf2ih7b3wpqpkqyfgfay3ci9kg16"; depends=[]; }; + SDMPlay = derive2 { name="SDMPlay"; version="1.0"; sha256="0pmqn487lvaxbcbx5nz86xpxsbbbiin20havhw6h9j43ly4qic7q"; depends=[dismo gbm ncdf4 raster rgdal SDMTools sp]; }; SDMTools = derive2 { name="SDMTools"; version="1.1-221"; sha256="1kacrpamshv7wz83yn45sfbw4m9c44xrrngzcklnwx8gcxx2knm6"; depends=[R_utils]; }; - SDR = derive2 { name="SDR"; version="0.7.0.0"; sha256="181ify2yypcfqi1ayk1r0xq4xw4r74r6l2b11k0al9wwxa7gy3c5"; depends=[]; }; SDaA = derive2 { name="SDaA"; version="0.1-3"; sha256="0z10ba4s9r850fjhnrirj2jgnfj931vwzi3kw9502r5k7941lsx0"; depends=[]; }; + SDraw = derive2 { name="SDraw"; version="2.1.3"; sha256="179h5byh92dkycchalf875pwq1h4ryg3hba9fs7fbq4dshki5i7p"; depends=[deldir rgeos sp spsurvey]; }; SEAsic = derive2 { name="SEAsic"; version="0.1"; sha256="1mg01sag6n1qldjvmvbasac86s7sbhi4k99kdkav2hdh6n9jg467"; depends=[]; }; SECP = derive2 { name="SECP"; version="0.1-4"; sha256="0a4j0ggrbs0jzcph70hc4f5alln4kdn2mrkp3jbh321a6494kwl1"; depends=[SPSL]; }; SEER2R = derive2 { name="SEER2R"; version="1.0"; sha256="0lk0kkp8sv3nl19zwqd7449mmjxsj3pqpzdmqf70qf8xh2pqyvzd"; depends=[]; }; - SEERaBomb = derive2 { name="SEERaBomb"; version="2015.2"; sha256="1pm49icslhwd6j4xn6y9m7y7prjyn64bfvl5c12r2jkvq05sd6v8"; depends=[DBI dplyr ggplot2 LaF mgcv plyr Rcpp reshape2 rgl RSQLite scales XLConnect]; }; - SEHmodel = derive2 { name="SEHmodel"; version="0.0.11"; sha256="06678bxy4kprzzr2q7pyc3dscar1554bb7fgcgamlkisdzc32q74"; depends=[deldir fftwtools fields MASS mvtnorm pracma raster rgdal rgeos sp]; }; + SEERaBomb = derive2 { name="SEERaBomb"; version="2016.2"; sha256="0fbgw1xyadqdl8bpf0hydrxjh43z4b0hjdk304fg6igg2v186fp5"; depends=[DBI dplyr ggplot2 LaF mgcv plyr Rcpp reshape2 rgl RSQLite scales XLConnect]; }; SEL = derive2 { name="SEL"; version="1.0-2"; sha256="1nrk0fx6ff330abq8askvp0790xnfv00m3sraqcr32hciw6ks421"; depends=[lattice quadprog]; }; SEMID = derive2 { name="SEMID"; version="0.2"; sha256="1897yjshcbidnrhr575sicsmhzyhjbagv0dp9g3nsv78syb6dr2p"; depends=[igraph]; }; SEMModComp = derive2 { name="SEMModComp"; version="1.0"; sha256="1za67470f13z8jsy3z588c7iiiz993d3vjqrb8v9fann2r6sf1md"; depends=[mvtnorm]; }; SETPath = derive2 { name="SETPath"; version="1.0"; sha256="1dpgmki0dhph13h1fd3mbf308746wccgfz5g5gdm7bwbjnmjzd98"; depends=[]; }; SEchart = derive2 { name="SEchart"; version="0.1"; sha256="19gqcd6xzwg37nzc67p88ip4i0v2f59ds85xfw9qq8lybvdm76k2"; depends=[JM]; }; - SGCS = derive2 { name="SGCS"; version="2.3"; sha256="1c917g03s50mp96lqhkjagsd2cq9rjbprlwf3h409dj59g6k2zx6"; depends=[spatstat]; }; + SGCS = derive2 { name="SGCS"; version="2.5"; sha256="1245xqv8im457zdgcny66jnzv8kyfi8ddic9zdk94sr6jkwx6x17"; depends=[spatstat]; }; SGL = derive2 { name="SGL"; version="1.1"; sha256="1wc430jqn3li102zpfmyyavfbab7x7ww9p89clxsndyigrrbjdr7"; depends=[]; }; - SGP = derive2 { name="SGP"; version="1.5-0.0"; sha256="0c5i28n6q41kksfskcd34199bk1abmwpy3md993aqbgf5bw54b4d"; depends=[Cairo colorspace data_table doParallel doRNG equate foreach gridBase gtools iterators jsonlite matrixStats quantreg randomNames RSQLite sn toOrdinal]; }; - SGPdata = derive2 { name="SGPdata"; version="13.0-0.0"; sha256="11dm2nw7wzd2fbfyjb6a2byyiq1wfnfmlsxys7li6yf3j95d9jw6"; depends=[]; }; - SHELF = derive2 { name="SHELF"; version="1.1.0"; sha256="07r2r75rnlxkp0qxqzp4qcfddnjn2akyzr0v8vblcqrhcyd90y5l"; depends=[ggplot2 shiny]; }; + SGP = derive2 { name="SGP"; version="1.6-0.0"; sha256="02q9kbafnlrwyzrf5xv4lj89ifhmx1gj03jvlrhb9a4g04084w1z"; depends=[Cairo colorspace crayon data_table digest doParallel doRNG equate foreach gridBase gtools iterators jsonlite matrixStats quantreg randomNames RSQLite sn toOrdinal]; }; + SGPdata = derive2 { name="SGPdata"; version="15.0-0.0"; sha256="1mqvrax1sndxbn8rp1hqnkhyfr9nlkz3bl7h2gr27ka3ddz1vv1h"; depends=[data_table]; }; + SHELF = derive2 { name="SHELF"; version="1.2.3"; sha256="1d52a1yci9zq9zl2mkq9ji340jfa47w47br5gpapd84yk9d61llb"; depends=[ggExtra ggplot2 MASS shiny tidyr]; }; SHIP = derive2 { name="SHIP"; version="1.0.2"; sha256="0b83cclibdz1r7sz968nmca4najwgps9wrdlsh4gxrl7fq40k4ln"; depends=[]; }; - SIBER = derive2 { name="SIBER"; version="2.0.2"; sha256="1jnrchwpvqk23vacn8dsh8mjqa5fdmvff1vqjc20xy42mdmkhr68"; depends=[hdrcde mnormt rjags]; }; + SHLR = derive2 { name="SHLR"; version="1.0"; sha256="0anj2bfbax8kipn7cgjhr4ijjcipixm9lshafh19qbxag2li1891"; depends=[doParallel FactoMineR foreach geepack kinship2 MASS Matrix stringr]; }; + SIBER = derive2 { name="SIBER"; version="2.1.0"; sha256="0vny2iy5jyffz6fh6a6y4i270c9ndkj0ixh0322lfa45cc6f4m7q"; depends=[hdrcde mnormt rjags]; }; SID = derive2 { name="SID"; version="1.0"; sha256="1446zy4rqbw0lpyhnhyd06dzv238dxpdxgmsk34hqv7g3j7q5h1w"; depends=[igraph Matrix pcalg RBGL]; }; + SIDES = derive2 { name="SIDES"; version="1.10"; sha256="13v4pdsaqah5v92fpc1lmsg5391igdys1l2frrw4432bvgm74rg9"; depends=[doParallel foreach MASS memoise multicool nnet survival]; }; SII = derive2 { name="SII"; version="1.0.3"; sha256="1k9mvz6g25qs351c0vx7n5h77kb6k833jrcww14ni59yc9jgvsyg"; depends=[]; }; SIMMS = derive2 { name="SIMMS"; version="1.0.2"; sha256="1phvphk7ir9zw77ycm27y4fin6wyxppsmb1cnm4xc83v1yq7lql4"; depends=[glmnet MASS survival xtable]; }; SIN = derive2 { name="SIN"; version="0.6"; sha256="0vq80m3vl8spdnlkwvwy0gk3ziyybqzjp3scnfdcpn942ds7sgg9"; depends=[]; }; - SIS = derive2 { name="SIS"; version="0.7-6"; sha256="0514fycicd1n3r86qw4blqv9bj23ak9s131yg5mfbk9q2fv3mx8k"; depends=[glmnet ncvreg survival]; }; - SKAT = derive2 { name="SKAT"; version="1.1.2"; sha256="1q79szh5xf55ibx401gdga3il81h3hf6pi68mah8i8rqpxph2v8z"; depends=[]; }; + SIS = derive2 { name="SIS"; version="0.8-3"; sha256="03hb5bldbpdm84viwx75vhh7zvh8nrn5nv155pb75v76rcsqx79m"; depends=[glmnet ncvreg survival]; }; + SISIR = derive2 { name="SISIR"; version="0.1"; sha256="08lw9y38j5qq00m2vcxsac97lg14j4w1y6607vw8isrb3qb5db9z"; depends=[doParallel expm foreach glmnet Matrix RSpectra]; }; + SKAT = derive2 { name="SKAT"; version="1.2.1"; sha256="0i8samw6bwzbwcpdf12b932r46yy2fkqp4dn7a5kk50mzzfphib2"; depends=[]; }; SLC = derive2 { name="SLC"; version="0.3"; sha256="0l0y1sjj0glsb7vwla99ijclcgaq2y85bgz1wqm348n4shsmm2rs"; depends=[]; }; + SLDAssay = derive2 { name="SLDAssay"; version="1.5"; sha256="1klfbvzlddblz6wgp0gb2i2c1bdp44iyl0gi87v9sg7wb3kwilld"; depends=[]; }; SLHD = derive2 { name="SLHD"; version="2.1-1"; sha256="0y3ilxd0phmks8zkmpgw7p5zrkwq4k95h976cwk58pavvhfwj9kb"; depends=[]; }; SLOPE = derive2 { name="SLOPE"; version="0.1.3"; sha256="12naak08qjpn6l1ikqwf17h72zk4b5mppgxx7ks9wmnqy9ylhy3x"; depends=[Rcpp]; }; SMC = derive2 { name="SMC"; version="1.1"; sha256="1r4ajgi785lmpnlxrba0n6phmk1f0mb6b5yqk6hx8gng2w8ggclz"; depends=[]; }; @@ -2305,11 +2826,13 @@ in with self; { SMFI5 = derive2 { name="SMFI5"; version="1.0"; sha256="10qp33l0dig00y9gfhpzqig6dbkjw76ch9pfq64dn4xrdkpq1kx5"; depends=[corpcor ggplot2 reshape]; }; SMIR = derive2 { name="SMIR"; version="0.02"; sha256="02q8m5m8lcfrpi78p3kajkps8wiir3jwyqc54j9vfx8aj6mk1v71"; depends=[]; }; SML = derive2 { name="SML"; version="0.1"; sha256="0pdj7321wy50v5l23hknlm30kp8cfgn072pbbifyp8qzmk0hyd8h"; depends=[glmnet lattice Matrix]; }; + SMLoutliers = derive2 { name="SMLoutliers"; version="0.1"; sha256="10frs7wcyn368m7fvw2f1cyd0xqr6sv5jziixnyvr8q5fadyl2p0"; depends=[]; }; SMNCensReg = derive2 { name="SMNCensReg"; version="3.0"; sha256="06542jacy74mw6ic0i1ml09pn45sll96bya7dqja6bg9yp0m6bvr"; depends=[Matrix PerformanceAnalytics]; }; SMPracticals = derive2 { name="SMPracticals"; version="1.4-2"; sha256="0apmkmsv2fqmxpgq08n9k9dvcknj74s4cpp0myjcd6kibb7g9slq"; depends=[ellipse MASS nlme survival]; }; SMR = derive2 { name="SMR"; version="2.0.1"; sha256="0qy56fmismcjklpf29ic2gi1g8ajdjpxsl0akb9cqzyisyf641ia"; depends=[]; }; SMVar = derive2 { name="SMVar"; version="1.3.3"; sha256="17wr4lixy3p32gr4jq02d7zsr88yrbddjsvynzdsdrwbxf4mwqhp"; depends=[]; }; SNFtool = derive2 { name="SNFtool"; version="2.2"; sha256="1d84ybsi91mr3ma4jzmr9606hg1q00yg0dn50vkjnyda50igcb1c"; depends=[heatmap_plus]; }; + SNPMClust = derive2 { name="SNPMClust"; version="1.3"; sha256="1gad1jfla4qpczh8vpwyss5cckzgpffsyj0d71r8drbspr4i3r90"; depends=[MASS mclust]; }; SNPassoc = derive2 { name="SNPassoc"; version="1.9-2"; sha256="113byj8zbg6xyxb1qzm76sqfyk3fap0sd90691zzm1x2pbfnb3mh"; depends=[haplo_stats mvtnorm survival]; }; SNPmaxsel = derive2 { name="SNPmaxsel"; version="1.0-3"; sha256="0pjvixwqzjd3jwccc8yqq9c76afvbmfq0z1w0cwyj8bblrjpx13z"; depends=[combinat mvtnorm]; }; SNPtools = derive2 { name="SNPtools"; version="1.1"; sha256="0l29kiqz4048x7amxx1qzkaw2xnd6lpdsdp5nq3rck9amx2hw64a"; depends=[Biostrings GenomicRanges IRanges Rsamtools]; }; @@ -2318,51 +2841,63 @@ in with self; { SOAR = derive2 { name="SOAR"; version="0.99-11"; sha256="1n38gx5sxpkqfkk4y6vpp6g19b8bs5bisni9wn6311s0csizp86m"; depends=[]; }; SOD = derive2 { name="SOD"; version="1.0"; sha256="0f0rh1qsjzxb3zzr440kvl6fnnj7dvc5apdzs5hpf6xrlfg863pk"; depends=[Rcpp]; }; SODC = derive2 { name="SODC"; version="1.0"; sha256="18s4rcp5dzchvwrzzbfhbs3x91zlg1rymjarxjk5i429mfrn0krx"; depends=[magic MASS ppls psych]; }; + SOFIA = derive2 { name="SOFIA"; version="1.0"; sha256="1jlaggxa2nz2r5yb2xmf0dh5wmxfdk6xwn0l3nwsqh82vyxhp7l9"; depends=[png]; }; + SOIL = derive2 { name="SOIL"; version="1.0"; sha256="1bx399530cfh7k6p8jw4irar3q1zazvpiqcb0k4q02s2ygx3z5p6"; depends=[brglm glmnet MASS ncvreg]; }; SOLOMON = derive2 { name="SOLOMON"; version="1.0-1"; sha256="0z91wsrgdir25ks4dnirzsg4f1ngal7n40235m3w43j6y6dhkqrc"; depends=[]; }; - SOMbrero = derive2 { name="SOMbrero"; version="1.1"; sha256="0zl46da2qh290wfk6xgxn67r6da978gi9mlkq83pnzi5ch5dsp0z"; depends=[igraph knitr RColorBrewer scatterplot3d shiny wordcloud]; }; + SOMbrero = derive2 { name="SOMbrero"; version="1.2"; sha256="1pvgxy22rha4nw0kcp8635hw5gl8l6j2c1ylbf5mvqb4c4pzpg09"; depends=[igraph knitr RColorBrewer scatterplot3d shiny wordcloud]; }; SOPIE = derive2 { name="SOPIE"; version="1.5"; sha256="0isvb2vzzpn57bq0ix2pfaqdnl5z8qk6v6fvf15vnxcqg2sm63q5"; depends=[ADGofTest circular]; }; - SOR = derive2 { name="SOR"; version="0.22"; sha256="1njwlsvdnwxidvwrx18h6h4dhrsdgy0fikkhn20pip42qqwd96gz"; depends=[Matrix]; }; + SOR = derive2 { name="SOR"; version="0.23.0"; sha256="0djmz57g23xpzv6p8i71f3zrsc6xdgqkbcvn5cbx9m78n31ipkm5"; depends=[Matrix]; }; SOUP = derive2 { name="SOUP"; version="1.1"; sha256="0k8nlvl4681cz07xjazprcc0jhknfa5hgr7w1qxxmgrp3sprr8r4"; depends=[tensor]; }; SPA3G = derive2 { name="SPA3G"; version="1.0"; sha256="15f38imwqn1zifym2821q7xysvws9vhlif4g16w0pnvk0wlhyb92"; depends=[]; }; SPACECAP = derive2 { name="SPACECAP"; version="1.1.0"; sha256="11szdq7sqr8ldwz7apbf1dv5mh43rbyb7dkivms58s5623xrq3sm"; depends=[coda]; }; SPARQL = derive2 { name="SPARQL"; version="1.16"; sha256="0gak1q06yyhdmcxb2n3v0h9gr1vqd0viqji52wpw211qp6r6dcrc"; depends=[RCurl XML]; }; SPAr = derive2 { name="SPAr"; version="0.1"; sha256="068jlsvaxx80ih6n86286m2r75cvy6w0m51vpj4gfclhh38py4p4"; depends=[]; }; + SPAtest = derive2 { name="SPAtest"; version="1.0.0"; sha256="07wc5mf49d65jizx3j4cjlcil758fzi6x688jji80spsapfq9gbn"; depends=[]; }; SPCALDA = derive2 { name="SPCALDA"; version="1.0"; sha256="1bmp2zz0favmpyp0ap8a2r1mg1nlan7zg5cj75drdnfpqlsn5vgl"; depends=[MASS]; }; SPECIES = derive2 { name="SPECIES"; version="1.0"; sha256="0p45llf2wjr467bqr4pbljfank9zz3fm42yl3i0r3jbkxgz0rjf0"; depends=[]; }; + SPEDInstabR = derive2 { name="SPEDInstabR"; version="1.3"; sha256="1yzls6i0v3c44lhdb9d2ydw6abphyjnrx2idxdcp0qqj87fw92l4"; depends=[]; }; SPEI = derive2 { name="SPEI"; version="1.6"; sha256="0mbz4nydnzwypfbi1d9fjy09x6133q096qbfrc913dbidzkvfpqv"; depends=[lmomco]; }; - SPIAssay = derive2 { name="SPIAssay"; version="1.0.0"; sha256="1rwa2iicwdm7z8khlnly0ybrqiisw420anr2pcdd5chxa48h8apg"; depends=[]; }; + SPIAssay = derive2 { name="SPIAssay"; version="1.1.0"; sha256="0y02122lj4v95g62w84jmdjdazfz3rch133aid5sgakj2kv68cvh"; depends=[]; }; + SPIGA = derive2 { name="SPIGA"; version="1.0.0"; sha256="0yd06x5rh1h1s4v9apj43c90rkz8m5kssbny7y5mnw5mr2acds9b"; depends=[GA]; }; SPIn = derive2 { name="SPIn"; version="1.1"; sha256="109xxrg7bsmmfd6ik85kxrw2qclxbh5ipsh5mmrdl4hki3hnyp2s"; depends=[quadprog]; }; SPODT = derive2 { name="SPODT"; version="0.9-1"; sha256="01yq429a4s63855bwpn2mqjj2k3cz4187kfpi7n7qqdpdvmxz109"; depends=[rgdal sp tree]; }; - SPOT = derive2 { name="SPOT"; version="1.0.5543"; sha256="0y8rj0wxy8sdk7si9k11i4pb96vp1q78h48ihs4r7d383zykk827"; depends=[AlgDesign emoa MASS mco randomForest rgl rpart rsm twiddler]; }; + SPOT = derive2 { name="SPOT"; version="1.1.0"; sha256="1f1nafp7v8k50s5x8m5bg6r9sb5ihr08f1x4643jqhxf7fcz2x10"; depends=[AlgDesign emoa MASS mco randomForest rpart rsm]; }; + SPPcomb = derive2 { name="SPPcomb"; version="0.1"; sha256="1kn3pi3c7g7waill1grm382ixbvnc7z8pbgzqd94hxqzgkivhid7"; depends=[nleqslv]; }; SPREDA = derive2 { name="SPREDA"; version="1.0"; sha256="1dyqsra899fd1nbk1b7vkw8gs455c6pbcvzw84q9iri77186xqhv"; depends=[nlme survival]; }; SPRT = derive2 { name="SPRT"; version="1.0"; sha256="1r4pfqh8k5avi8qgpk5x1cy8lmkn341yvjvd2r7wqwb3mr242r0v"; depends=[]; }; SPSL = derive2 { name="SPSL"; version="0.1-8"; sha256="1jg1nfhz8qml1wwqa4d0w7vkdmbgdy5xlfqx0h2pdw2z8iij3xxc"; depends=[]; }; SPmlficmcm = derive2 { name="SPmlficmcm"; version="1.4"; sha256="1acs3560a7h6xx286m40abr9b7i5qihn6wni8flj0biahmsszzx6"; depends=[nleqslv]; }; + SPreFuGED = derive2 { name="SPreFuGED"; version="1.0"; sha256="1cdamkrr0xpc0l2dypd9lgjidrmalfxs0ms7z3wfmf22a8b3y0d2"; depends=[Biobase boot CMA lattice limma lme4 mvtnorm]; }; SQDA = derive2 { name="SQDA"; version="1.0"; sha256="0nfimk625wb64010r5r7hzr64jfwgc6rbn13wvrpn0jgayji87h6"; depends=[limma mvtnorm PDSCE]; }; SQN = derive2 { name="SQN"; version="1.0.5"; sha256="0kb8kf6g482zqdp4avwvhs3pqghfny757dbzfl1abaigmvwvx4qj"; depends=[mclust nor1mix]; }; - SQUAREM = derive2 { name="SQUAREM"; version="2014.8-1"; sha256="17fn37da4zslbfq5h4f3dfwyw1dxj5y2rgly3vjl2c4k5bnwxxqw"; depends=[]; }; + SQUAREM = derive2 { name="SQUAREM"; version="2016.8-2"; sha256="1iywv8sj5v0qr5vc0zcs8yqwqrivp0jd45j1g4zkq332c68vvl0k"; depends=[]; }; SRCS = derive2 { name="SRCS"; version="1.1"; sha256="13zf3cqs53w68f9zc1fkb9ql84rvzn7g1hbykqrbvss8hjaq8x1r"; depends=[]; }; SRRS = derive2 { name="SRRS"; version="0.1.1"; sha256="0jv545a97q4pyl89lmhn3y0jhdzyq033mvx144x8lcgx59s7cyi3"; depends=[gtools tcltk2]; }; + SSBtools = derive2 { name="SSBtools"; version="0.2.1"; sha256="1cqdmvh9gxyx2yciy0j54v84hl8cayifv368ip5y3k6g1cff6488"; depends=[]; }; SSDM = derive2 { name="SSDM"; version="0.1.1"; sha256="1kg2694l42sbd0glzhvsykfpadmzarc275n88775g03as800vq1w"; depends=[dismo e1071 earth gbm gplots mgcv nnet randomForest raster rpart SDMTools shiny shinydashboard sp spThin]; }; - SSDforR = derive2 { name="SSDforR"; version="1.4.12"; sha256="19rgr69ygbiq1lv3jnm282xn6914gh0rk99vxbgsx8zkc0n6cksy"; depends=[MASS psych TSA TTR]; }; - SSN = derive2 { name="SSN"; version="1.1.7"; sha256="04gc06ic7np50qfyymvn8v1kiiyqpvm2yjxm6zfwbilm90k7ag0c"; depends=[BH igraph lattice maptools MASS RSQLite sp]; }; + SSDforR = derive2 { name="SSDforR"; version="1.4.14"; sha256="13xj3nq4rfi5yih7h5gp01mpjyj6090sy9835p41k89pfdd6g71p"; depends=[MASS psych TSA TTR]; }; + SSL = derive2 { name="SSL"; version="0.1"; sha256="0fy6svf8xfni72bpsg8a5wr8ly46srhfixk8866lrcsp8pb6mqcd"; depends=[caret e1071 klaR NetPreProc proxy Rcpp xgboost]; }; + SSN = derive2 { name="SSN"; version="1.1.8"; sha256="0r5l8yw9zq8ddmyhifl27r13bab7327kwb5grlpfx4yqpp11szyp"; depends=[BH igraph lattice maptools MASS Matrix rgeos RSQLite sp]; }; + SSRA = derive2 { name="SSRA"; version="0.1-0"; sha256="1d0lg2dz8vf1d63366s5apm0ygrsfxivbrsij907r244zj6i1c37"; depends=[shape stringr]; }; SSRMST = derive2 { name="SSRMST"; version="0.1.0"; sha256="05bjc2bmsfykrddch7ynixqsq6z813wvibpwh37223q78xpb8nry"; depends=[survival survRM2]; }; SSrat = derive2 { name="SSrat"; version="1.0"; sha256="1qpsdfdngsgxx3mqgn4avl65w4v5v4jwsh1nnxzfn9iqi9mg4bhi"; depends=[plyr sna]; }; SSsimple = derive2 { name="SSsimple"; version="0.6.4"; sha256="0p7d4hx7mhn5myq8ajcij6hhg79rjxigk5v8z93yfdw4gjcb5wad"; depends=[mvtnorm]; }; STAND = derive2 { name="STAND"; version="2.0"; sha256="07wrpmvk0jjlghvrb37xyai48vgzj0fby8y09qdxsxdlgwqg1f3s"; depends=[survival]; }; STAR = derive2 { name="STAR"; version="0.3-7"; sha256="1g78j4iyh78li1jaa3zz5qv4p41cg0imhmvbfakd34l32ppih4ll"; depends=[codetools gss mgcv R2HTML survival]; }; - STEPCAM = derive2 { name="STEPCAM"; version="1.1.1"; sha256="009hd59hwvkrqq5g4psw3aw7qbdrqdxglkg7iyxhb6mz3lxbzym3"; depends=[ade4 ape FD geometry gtools MASS vcd]; }; + STB = derive2 { name="STB"; version="0.6.3.1"; sha256="0fj1cfxqhijpxl41z799zd7id95jsb84ylrbqzrd1jlp80plyw83"; depends=[Matrix VCA]; }; + STEPCAM = derive2 { name="STEPCAM"; version="1.2"; sha256="03crbc7hag8w333j9c7k0q7zy7xmfid4lq773p74r55jmac5xpjf"; depends=[ade4 ape FD geometry gtools MASS vcd]; }; STI = derive2 { name="STI"; version="0.1"; sha256="1p408y9w2h4ljaq0bsw7vc1xghczjprf558cyg6994m0nv5fh4c4"; depends=[fitdistrplus zoo]; }; STMedianPolish = derive2 { name="STMedianPolish"; version="0.1"; sha256="1mysmigksrgkgzz7cng5vn8i7q4marq144dpwww30lisw2jgraiq"; depends=[maptools reshape2 sp spacetime zoo]; }; - STPGA = derive2 { name="STPGA"; version="1.0"; sha256="1kqxzjrxf194n006dr3h5kprb4l7qy8bgm2n6251p0sswpvr70j1"; depends=[]; }; + STPGA = derive2 { name="STPGA"; version="3.0"; sha256="093van0k48x7i7r6g2kzn59x58rpqizkkw99l67agndnij13kck9"; depends=[]; }; SUE = derive2 { name="SUE"; version="1.0"; sha256="0akv724s84v2zixvwywj1ydfnfvcjnaabv6gm0601nsrh6ij1mi6"; depends=[]; }; SVMMaj = derive2 { name="SVMMaj"; version="0.2-2"; sha256="01njc7drq01r3364081dv9gn37vrql52zbrb60gd559f3jshqx3m"; depends=[kernlab MASS]; }; SVMMatch = derive2 { name="SVMMatch"; version="1.1"; sha256="1ykwrhlid4hs466xh3kv6y2qdhgk0jiglg0l3zwk5qlni6p26zc9"; depends=[Rcpp RcppArmadillo]; }; SWATmodel = derive2 { name="SWATmodel"; version="0.5.9"; sha256="1i48g9nbjfn30ppwyzyz3k181nscv4wx773l8mzfdwhx0nlv4kyj"; depends=[EcoHydRology]; }; - SWMPr = derive2 { name="SWMPr"; version="2.1.4"; sha256="0i0cy29rk1n4kdrrb7pdj4l8rlxnsabl9iv1pxb06a0fkwpwwk22"; depends=[data_table dplyr ggmap ggplot2 gridExtra httr maptools oce RColorBrewer reshape2 tictoc tidyr wq XML zoo]; }; + SWMPr = derive2 { name="SWMPr"; version="2.2.0"; sha256="1nq3wc06c7fga9v69fwk3dr348lb127wd9ikb59lgnx2w86g83mk"; depends=[data_table dplyr ggmap ggplot2 gridExtra httr lattice maptools oce openair RColorBrewer reshape2 tictoc tidyr XML zoo]; }; SYNCSA = derive2 { name="SYNCSA"; version="1.3.2"; sha256="1m057lhfaf0n35rs3sipia04qgkp04hv7wf7rvnr7bhzic9f4vg3"; depends=[FD mice vegan]; }; Sabermetrics = derive2 { name="Sabermetrics"; version="2.0"; sha256="00axm9wxwzasjrld9nfn1wqzrm2ybm7i6xh6005m9lnkb6qwmvi3"; depends=[XML]; }; - SafeQuant = derive2 { name="SafeQuant"; version="2.2.2"; sha256="1wlvrmn4v81zzk1apdyd8dmfrxrpciqp60m614sbkaymg268d4p4"; depends=[Biobase corrplot data_table epiR gplots limma optparse seqinr]; }; + SafeBayes = derive2 { name="SafeBayes"; version="1.1"; sha256="09bhd3z9ia2mvpn1h0hil00j6cm4x9y9ymxc3gj8wd4ybdi3jqlm"; depends=[]; }; + SafeQuant = derive2 { name="SafeQuant"; version="2.3.1"; sha256="0rgi0ij33sdvkpmjynfmsj0f29kl9l9ylsqckg5x4v49m6mzq1yh"; depends=[Biobase corrplot data_table epiR gplots limma optparse seqinr]; }; Sample_Size = derive2 { name="Sample.Size"; version="1.0"; sha256="1vfnb2gg3rax4sxd81xqznfvh300nv45nn7zjsyrdjyg1n3ym7nw"; depends=[]; }; SampleSizeMeans = derive2 { name="SampleSizeMeans"; version="1.1"; sha256="1wbc46n8b8wbcxl21blbzs5728dr8r0l8d3jpzbha8pcav0xrh1m"; depends=[]; }; SampleSizeProportions = derive2 { name="SampleSizeProportions"; version="1.0"; sha256="0mvkvx3nni0l8ys68sq3h2zlbjvksdcdzxqlf03k0ca5bbcmdf9l"; depends=[]; }; @@ -2371,160 +2906,203 @@ in with self; { Scale = derive2 { name="Scale"; version="1.0.4"; sha256="1fa3840kji34qpbw6mxfavk8wq0vq0vx2w6ya71idbkxnvwc3y06"; depends=[Hmisc MASS psych]; }; SchemaOnRead = derive2 { name="SchemaOnRead"; version="1.0.2"; sha256="0xa53mqmv31gid6n82bnfmds6p8nkjlmkj15hyycxhja2j752knm"; depends=[caTools foreign haven ncdf4 network readbitmap readODS readxl tiff xml2]; }; SciViews = derive2 { name="SciViews"; version="0.9-5"; sha256="199waafpn0ndg7szwfhw2jlgcx1f0pv7j0vix2vzz60knwm698xb"; depends=[ellipse MASS]; }; - SciencesPo = derive2 { name="SciencesPo"; version="1.3.9"; sha256="1w3skni7q3nab1w09fms9gl3cwkr1dzw62iw2xxq21fm2ipawpc6"; depends=[data_table dplyr ggplot2 gridExtra lazyeval magrittr RSQLite shiny stringr vcd]; }; + SciencesPo = derive2 { name="SciencesPo"; version="1.4.1"; sha256="1y9ymm5h6mmcx1ncl7yq2nn681gm0hd25fgxxwill9bzpy34pdnr"; depends=[data_table ggplot2 htmltools lubridate pander Rcpp rstudioapi shiny stringr xtable]; }; ScoreGGUM = derive2 { name="ScoreGGUM"; version="1.0"; sha256="0f7sjfr3a8b8y1n9lrwyiyyljls3rbz84d9s93psi2fnmjj0kvgw"; depends=[]; }; ScottKnott = derive2 { name="ScottKnott"; version="1.2-5"; sha256="1ywwhdghcy30mp2nhsk2yhgb37nrdmb9yan5vvzsg66bchc3xgll"; depends=[]; }; + ScottKnottESD = derive2 { name="ScottKnottESD"; version="1.1"; sha256="135g575hbxlv4arw7l5miwc094z92ykx49aa3mia1spxj8ldly64"; depends=[effsize reshape2 ScottKnott]; }; ScrabbleScore = derive2 { name="ScrabbleScore"; version="1.0"; sha256="19vgaxnhvqsbllqxfbnhnar2j4g0fkxi7rfsmkks2bd2py81x04m"; depends=[]; }; ScreenClean = derive2 { name="ScreenClean"; version="1.0.1"; sha256="0haanr05g4vwp5apncyzv8i3r61g4xf9ihm8ilcabcgpri56gpjk"; depends=[MASS Matrix quadprog]; }; SearchTrees = derive2 { name="SearchTrees"; version="0.5.2"; sha256="11p81x1klkmxarypxpbisf78dlrmhzzg9y9hxpwz75pks1y56gqg"; depends=[]; }; + SecKW = derive2 { name="SecKW"; version="0.2"; sha256="13x9l6ncx8qszkcr7dpfzrk4zqj4w8z5lwd394437vl4xf1xv0k6"; depends=[fdrtool pracma]; }; SegCorr = derive2 { name="SegCorr"; version="1.1"; sha256="1hfkwfq4s3xm0wip82v000x5axkzkn4vkv6wima4mrnlvwi2yb9k"; depends=[cghseg]; }; - Segmentor3IsBack = derive2 { name="Segmentor3IsBack"; version="1.8"; sha256="00m6fvx6s8mz477c8b4dmgdh52jf6jx1lcqzf84l90b1xw93qnv7"; depends=[]; }; + Segmentor3IsBack = derive2 { name="Segmentor3IsBack"; version="2.0"; sha256="0c7ag9svd1xlm60padg41gvz7qnbcp41kg3cz2dvi9hy2yrqw0qd"; depends=[]; }; Sejong = derive2 { name="Sejong"; version="0.01"; sha256="1d9gw42dbs74w7xi8r9bs6dhl23y16yxqzyhqqayvcm98q3l77nf"; depends=[]; }; - SeleMix = derive2 { name="SeleMix"; version="0.9.1"; sha256="04gxgja35qs4k66iil014dzgl5bkx0qhr9w4v7qpmwv2bb07jwz3"; depends=[Ecdat mvtnorm xtable]; }; - SelvarMix = derive2 { name="SelvarMix"; version="1.1"; sha256="0rn6ahqg3yriaf32rn07mdd5aqyqb35xv7v4ydc7q1ym1wmc9zla"; depends=[glasso Rcpp RcppArmadillo Rmixmod]; }; + SeleMix = derive2 { name="SeleMix"; version="1.0.1"; sha256="1qzy59wbjh8llm66l70xi0p3lv94iawh2h5vwa9sqy2ra5vmpaxk"; depends=[mvtnorm]; }; + Select = derive2 { name="Select"; version="1.1"; sha256="16ih65dfk6s8xkn1mqdn2391x40lzlmfsv46g01ngpsym4dry8dq"; depends=[lattice latticeExtra Rsolnp]; }; + SelvarMix = derive2 { name="SelvarMix"; version="1.2"; sha256="03yhsrfnl32n2dk3gn63vsys5vm5j30zrar1kvhrmckl8qczhqr1"; depends=[glasso Rcpp RcppArmadillo Rmixmod]; }; + SemiCompRisks = derive2 { name="SemiCompRisks"; version="2.6"; sha256="0dxr0jjj9fivbpwkknsxd8n2z4amszlkb240p66lj10i8bk5bd8f"; depends=[MASS survival]; }; SemiMarkov = derive2 { name="SemiMarkov"; version="1.4.3"; sha256="1qfsy88bd07xk3gy2r7cjcs6fhx9889aqn1494d92msxmc6zvcz7"; depends=[MASS numDeriv Rsolnp]; }; SemiPar = derive2 { name="SemiPar"; version="1.0-4.1"; sha256="05gnk4s0d6276rmnyyv6gy1wpkji3sw563n8l7hmi9qqa19ij22w"; depends=[cluster MASS nlme]; }; - SemiParBIVProbit = derive2 { name="SemiParBIVProbit"; version="3.7"; sha256="1wk8r8n957l47s4wa6b6xps87p1h5jylif9m1a16d7a5i0bxjj6m"; depends=[ggplot2 magic matrixStats mgcv survey trust VGAM VineCopula]; }; - SemiParSampleSel = derive2 { name="SemiParSampleSel"; version="1.3"; sha256="14m3ahhp8xfnm01a0knd7qw2lrd1z3kxfazw8kin8g4dhcvhxwj7"; depends=[copula gamlss_dist magic Matrix mgcv mvtnorm trust VGAM]; }; + SemiParBIVProbit = derive2 { name="SemiParBIVProbit"; version="3.8-1"; sha256="0a69x24dd4chpag2abf1a0jwr3942d3ydb1i370ky6f4ky5w71q9"; depends=[gamlss_dist ggplot2 magic matrixStats mgcv mnormt Rmpfr survey trust VGAM VineCopula]; }; + SemiParSampleSel = derive2 { name="SemiParSampleSel"; version="1.4"; sha256="0b8dfjrjx7c409mid013wbp5s3wz4q5rh4dcgsla2vin2allv0az"; depends=[copula gamlss_dist magic Matrix matrixStats mgcv mvtnorm trust VGAM VineCopula]; }; SenSrivastava = derive2 { name="SenSrivastava"; version="2015.6.25"; sha256="0r4p6wafnfww07kq19lfcs96ncfi0qrl8n9ncp441ri9ajwj54qk"; depends=[]; }; - SensMixed = derive2 { name="SensMixed"; version="2.0-9"; sha256="15ak95pwnwshgjgp8xpv5y87hbhcx38g4ky7wcjx71pzj2kcxdzj"; depends=[doBy ggplot2 Hmisc lme4 lmerTest plyr reshape2 shiny shinyBS xtable]; }; + SensMixed = derive2 { name="SensMixed"; version="2.0-10"; sha256="0r2lga40xr782n1viyxc4wn9gzgm7g2ick45pfnkgq6m60wx9rfh"; depends=[doBy ggplot2 Hmisc lme4 lmerTest plyr reshape2 shiny shinyBS xtable]; }; SensitivityCaseControl = derive2 { name="SensitivityCaseControl"; version="2.1"; sha256="00jqzqx7g0av9lw13is723gph486gb8ga0wgcmmzpmb24s5nya9z"; depends=[]; }; SensoMineR = derive2 { name="SensoMineR"; version="1.20"; sha256="1qw97cixndg2h29bbpssl0rqag3w8im4nm9964lr7r012y5wdqhx"; depends=[cluster FactoMineR KernSmooth]; }; - SensusR = derive2 { name="SensusR"; version="1.0"; sha256="1b5yrb3iiijr7x0r4ga5dlx6yqqk4bvmh1377655s6c7j36sn1xd"; depends=[jsonlite lubridate plyr rworldmap sp]; }; - SeqFeatR = derive2 { name="SeqFeatR"; version="0.2.0"; sha256="1ypf3gm29vr9vvjx62z96hpcfsygaia9nmi3s71cv22b8p8mxwlx"; depends=[ape Biostrings calibrate coda ggplot2 phangorn plotrix plyr qvalue R2jags tcltk2 widgetTools]; }; + SensusR = derive2 { name="SensusR"; version="2.0.0"; sha256="1897d9lh3srgg99lnjs77j2yrgskbzp68d04i4pkar6slc6xsmli"; depends=[ggmap ggplot2 jsonlite lubridate plyr sp]; }; + SeqAlloc = derive2 { name="SeqAlloc"; version="1.0"; sha256="04rhr3gb2p9i35a3x4k8m0lv42ncfqlhx6sf3bq8yihppwrag8x3"; depends=[]; }; + SeqFeatR = derive2 { name="SeqFeatR"; version="0.2.4"; sha256="0wk40lhx2bjyfl8gcv9g1c3bm7kf3b12pfdb0zk22vcp2flr0mci"; depends=[ape Biostrings calibrate coda ggplot2 phangorn plotrix plyr qvalue R2jags scales tcltk2 widgetTools]; }; SeqGrapheR = derive2 { name="SeqGrapheR"; version="0.4.8.5"; sha256="041hlf64zbndz76r076pmym4dw4xl3fahryvpvjspw0sdlhmfm8c"; depends=[Biostrings cairoDevice gWidgets gWidgetsRGtk2 igraph rggobi]; }; - Sequential = derive2 { name="Sequential"; version="2.0.2"; sha256="1ljrhzr08ynng54szym03gggkw9f6pni54fbkqwgcqja23597f80"; depends=[]; }; - SetMethods = derive2 { name="SetMethods"; version="1.0"; sha256="0zizvrzyk01w4ncazvifmjm4h5zrpsf6n68n11sc8f5kzny9ia48"; depends=[betareg lattice]; }; - SetRank = derive2 { name="SetRank"; version="1.0.1"; sha256="0zh5j6ksaggz46d9j37xpajyxlx7r83bv64yn9gdc6z20slrbch7"; depends=[data_table igraph XML]; }; - ShapeChange = derive2 { name="ShapeChange"; version="1.3"; sha256="0f18z489rmrqyrwlmmv8qra0m65zbbhqkd00zc8sxnmkjn3jlzvw"; depends=[coneproj quadprog]; }; - ShapeSelectForest = derive2 { name="ShapeSelectForest"; version="1.2"; sha256="0z2drcpnfq78wdcd4zbg4pi0jbfs8jkqqjcmm53bzy7mlm0xm2qj"; depends=[coneproj raster rgdal]; }; + SeqMADE = derive2 { name="SeqMADE"; version="1.0"; sha256="0nf1xjhk0kpmmzgcxycg3ccxvwq6gydjq7xq6n9m7k7v35v9v3qf"; depends=[MASS]; }; + SequenceAnalysis = derive2 { name="SequenceAnalysis"; version="1.3"; sha256="0jrpq5ryw7rwkv99w0a5p3r0vj8nbzj6adlcsr84d9ffgxafmhif"; depends=[XML]; }; + Sequential = derive2 { name="Sequential"; version="2.3"; sha256="0z0ywrvc81gyk4wl810628gikaiadhbapbvkqf2ihr6n632cbr2z"; depends=[]; }; + SetMethods = derive2 { name="SetMethods"; version="2.0"; sha256="0ya8n4pin8j54gcc2fx99xgcrmnv9rm4r9a32nnylyqk49yj41dv"; depends=[betareg lattice QCA QCAGUI]; }; + SetRank = derive2 { name="SetRank"; version="1.1.0"; sha256="0p7vwsw05s5hfw1mfh3fbm9nfzsymnxzrdjin7k21dx7asb618wy"; depends=[data_table igraph XML]; }; + SetTest = derive2 { name="SetTest"; version="0.1.0"; sha256="0b5lkdhaymi3vsx9acdn9jxvqwwsac9lbdr43c44c06gglqlvk47"; depends=[]; }; + ShapeChange = derive2 { name="ShapeChange"; version="1.4"; sha256="1ch7avx8mxjk8vrp17inaihmbsv968wflyk1n4fbjvacbl24vn2b"; depends=[coneproj quadprog]; }; + ShapePattern = derive2 { name="ShapePattern"; version="1.0.1"; sha256="18jzs0sq21qhldm86mgx7yb9kl473vv1aljl9hm4560xy5pd5fnb"; depends=[rgdal rgeos sp]; }; + ShapeSelectForest = derive2 { name="ShapeSelectForest"; version="1.3"; sha256="1vvfl1ldrn0l9w38hx0hhszvj5a2dpmfl6ljzw7f0ji181lrx96m"; depends=[coneproj raster rgdal]; }; SharpeR = derive2 { name="SharpeR"; version="1.1.0"; sha256="0qhvpwv81jznqfzm7xysm051ckv8ilq7zhsysxc7wripnlj01c4m"; depends=[matrixcalc sadists]; }; - ShrinkCovMat = derive2 { name="ShrinkCovMat"; version="1.1.1"; sha256="1vzsl6y57fri8q4455pbmiidfj91986mv67nr4ikck7f1z82mq38"; depends=[]; }; - Shrinkage = derive2 { name="Shrinkage"; version="1.0"; sha256="1n338zj4a063c8b9wajccp156kwxzirb70j8rppnklkq497plfc5"; depends=[limma multtest PsiHat]; }; + ShinyItemAnalysis = derive2 { name="ShinyItemAnalysis"; version="1.1.0"; sha256="1njnfmysd16bl46wqynzgw32f84yy0vkf8i1flgy19jkrb7q9zy6"; depends=[corrplot CTT deltaPlotR difNLR difR DT ggplot2 gridExtra latticeExtra ltm mirt moments msm nnet psych psychometric reshape2 rmarkdown shiny shinyjs stringr WrightMap]; }; + ShinyTester = derive2 { name="ShinyTester"; version="0.1.0"; sha256="0wm4rl2p8ggw6v2chk9b6ygh5y8p8cwzbyra0nr0qr2ka97didp8"; depends=[dplyr purrr readr stringr tidyr visNetwork]; }; + ShrinkCovMat = derive2 { name="ShrinkCovMat"; version="1.1.2"; sha256="1rfmsmqd4gq27scm3f0y7p5ivsmk20cjizfycp3sj8ng0qahjmaq"; depends=[]; }; + SiMRiv = derive2 { name="SiMRiv"; version="0.9.1"; sha256="0aw2x9fgjzs8fiz5gqml333w3yi7k65jz611mbhjh26nvbgq82ls"; depends=[raster]; }; SiZer = derive2 { name="SiZer"; version="0.1-4"; sha256="0kiwvxrfa2b49r2iab5v2aysc2yzk5ck3h41f2hr0vq5pdnz0qy5"; depends=[boot]; }; - SigTree = derive2 { name="SigTree"; version="1.10.3"; sha256="1la63w8kv9q0ci302s0lxdabx70smxxn669blynkhip9r30zjx8h"; depends=[ape phyext2 phylobase phyloseq RColorBrewer]; }; + SigTree = derive2 { name="SigTree"; version="1.10.5"; sha256="1i0zhawv0dl764ciyyr3r4sbql2xhhks2r8vbya10wnzyqipxmmb"; depends=[ape MASS phyext2 phylobase phyloseq RColorBrewer vegan]; }; SightabilityModel = derive2 { name="SightabilityModel"; version="1.3"; sha256="0rgv5735y07yyv5y9c3flzha97ykn34ysmzy6as1z94hqfr4w746"; depends=[]; }; - Sim_DiffProc = derive2 { name="Sim.DiffProc"; version="3.2"; sha256="1rx7bpdcf8h1dn647cwx0j7ss3lajizsnxd0cc9dj37v4g14bgyl"; depends=[rgl scatterplot3d]; }; + SignifReg = derive2 { name="SignifReg"; version="1.0"; sha256="1360892wy0qc6dch3753s4a17l3pcijjmxd34zqvzl9534arlsxd"; depends=[]; }; + Sim_DiffProc = derive2 { name="Sim.DiffProc"; version="3.6"; sha256="0hkh97yi7zpm6d87vapzlwyq7l8dra36wy3brfh6b827535wfg3k"; depends=[MASS rgl scatterplot3d]; }; SimComp = derive2 { name="SimComp"; version="2.2"; sha256="07gmlbwvv07kq3z7gq2jxlank011c0cqh8zwwp4pzf061d3gjdm6"; depends=[mratios multcomp mvtnorm]; }; - SimCorMultRes = derive2 { name="SimCorMultRes"; version="1.4.0"; sha256="0hrkwim582cb22ipy5vv1gp9bszjsqyzyzrwqwgy4247brag26fm"; depends=[evd]; }; - SimDesign = derive2 { name="SimDesign"; version="0.8"; sha256="0sf0ajwhkrq3awa6nig09slj5d0bc18jim7d4vg51i4mygs258mi"; depends=[foreach plyr]; }; + SimCorMultRes = derive2 { name="SimCorMultRes"; version="1.4.2"; sha256="04qs0b7sn170m65176p7gmk03dzm2jjgqknmc8kjab8snlrr3r3k"; depends=[evd]; }; + SimDesign = derive2 { name="SimDesign"; version="1.5"; sha256="00hyignxsy3h4qcr98rwsahahgg3p9xhz6dbpr2hn6ymdaxvddyb"; depends=[foreach pbapply plyr]; }; SimHaz = derive2 { name="SimHaz"; version="0.1"; sha256="04q4xyc1ki1zr3grm3khfg0kbykjy3j9qpg332l7pxp4j3wa3aw3"; depends=[survival]; }; - SimInf = derive2 { name="SimInf"; version="1.0.0"; sha256="0y7f6905k14y6rjz7lzx2s6q4l7fjl25dykha40vddcddc83spnd"; depends=[Matrix]; }; + SimInf = derive2 { name="SimInf"; version="3.0.0"; sha256="0pj99jrkx898rnjijvzcw7xxz0hka767a1b2khwlk5kpja7zx5ax"; depends=[Matrix]; }; + SimPhe = derive2 { name="SimPhe"; version="0.1.1"; sha256="00qqqsf7na5c9nslnfpbyr2ysf7d7bi6vnpfiy761nhg8vgf2vjv"; depends=[]; }; SimRAD = derive2 { name="SimRAD"; version="0.96"; sha256="0ivvd3k04v1akbblxcjhlyc315z3ig7wjs0g3b37lvlfp54ppbrg"; depends=[Biostrings ShortRead zlibbioc]; }; - SimReg = derive2 { name="SimReg"; version="1.4"; sha256="0lh2ra9k76zaffdn83an0xkff105iwn9ia3l2m6kijr3kl7ils38"; depends=[ontologyIndex ontologyPlot ontologySimilarity plotrix Rcpp]; }; + SimReg = derive2 { name="SimReg"; version="3.0"; sha256="188q399xcrvjw7y7lf3hfbb7x0m0hc4zaf9i1w2c4xzswmvljd8r"; depends=[ontologyIndex ontologyPlot ontologySimilarity Rcpp]; }; + SimSCRPiecewise = derive2 { name="SimSCRPiecewise"; version="0.1.1"; sha256="0mhlx9m5db8a40wf275qh59345676m8bpjjmyx1v22f6m9p3b2n4"; depends=[]; }; SimSeq = derive2 { name="SimSeq"; version="1.4.0"; sha256="068gg484w07qb4wajik2s3z79xfj0jg5l4pz69267dxi5kzd9fas"; depends=[fdrtool]; }; SimilarityMeasures = derive2 { name="SimilarityMeasures"; version="1.4"; sha256="1w4klcln4hy9vcik9csg7b3b8kk4raxgckwfrhqg089d80xbqsxj"; depends=[]; }; Simile = derive2 { name="Simile"; version="1.3.3"; sha256="1izyjp18m1inac3svkf59z3lddrv44m7pdkhisgkr987xs8gdch4"; depends=[]; }; SimpleTable = derive2 { name="SimpleTable"; version="0.1-2"; sha256="1rkybrp7zlb7cj37799npss1ldic0yf519q5l7a6ikal4yl1afyb"; depends=[hdrcde locfit MCMCpack]; }; - SimplicialCubature = derive2 { name="SimplicialCubature"; version="1.1"; sha256="1zxbrpsc96rhgnv5zcl2zgfmk7y6jshwnchh5dl1d3agqy36509r"; depends=[]; }; + SimplicialCubature = derive2 { name="SimplicialCubature"; version="1.2"; sha256="1g7i31naczqf1hxmk1h5y9gq36rdfhf4al9xvwjgi9bj9zhfg3qp"; depends=[]; }; Simpsons = derive2 { name="Simpsons"; version="0.1.0"; sha256="1pm6wga1yxc35zgz72plzq23d3l4bbzfdvhszdxmkn1pkk64h8ms"; depends=[mclust]; }; SimuChemPC = derive2 { name="SimuChemPC"; version="1.3"; sha256="06sxknaykikcgbw7qbbw1risg0sbaisb68vhfd7cl6sg0327dznk"; depends=[rcdk]; }; SimultAnR = derive2 { name="SimultAnR"; version="1.1"; sha256="0jvmxwmbnx14h27b576dg9mw3c2z0w3m82f51f25zd1darcl06bj"; depends=[]; }; - SixSigma = derive2 { name="SixSigma"; version="0.9-2"; sha256="127q556amd40h636av71xv8vh7qn0kmax8yhvw1l5pfq2h3ms1s1"; depends=[e1071 ggplot2 lattice nortest qcc reshape2 scales testthat xtable]; }; + SinIW = derive2 { name="SinIW"; version="0.2"; sha256="1z7rcjy0i09a9hjpjj1x8i46lv042l20lvb6b0pnsky2sx3v78pd"; depends=[fdrtool pracma]; }; + SixSigma = derive2 { name="SixSigma"; version="0.9-3"; sha256="04d09w1h6aq3j245gbj8cx7dsr88n4np6i751k9sx7lfx6al3w50"; depends=[e1071 ggplot2 lattice nortest qcc reshape2 scales testthat xtable]; }; + SizeEstimation = derive2 { name="SizeEstimation"; version="1.1.1"; sha256="1rz57y76hzp880511kzm7nhxf201n0dr7ccip6slrjz784dl7s27"; depends=[MCMCpack msm]; }; SkewHyperbolic = derive2 { name="SkewHyperbolic"; version="0.3-2"; sha256="10vilra5z884xinqkvk7ryi4nsq5zxlyn5qh23lsajba3b3qwhaw"; depends=[DistributionUtils GeneralizedHyperbolic RUnit]; }; Skillings_Mack = derive2 { name="Skillings.Mack"; version="1.10"; sha256="0zxqiw87avw2rb2acj7mvpyfkf7iwnkshg73ib74y5ml9awmg2mw"; depends=[MASS matrixcalc]; }; Sky = derive2 { name="Sky"; version="1.0"; sha256="02vjdggvanzsjx7ihxskapp5d5dlyalj02122wmarj8qf1ha1i2m"; depends=[EBImage]; }; - Sleuth2 = derive2 { name="Sleuth2"; version="2.0-3"; sha256="030wq178b7s9grdj3a65lplxv1p84m84yf9x4dild392p812199c"; depends=[]; }; - Sleuth3 = derive2 { name="Sleuth3"; version="1.0-1"; sha256="0vy7b69f5y3ahbgi8c2lr42xhz4h0z7zcyrai42050snjmwrxb1l"; depends=[]; }; - SmarterPoland = derive2 { name="SmarterPoland"; version="1.5"; sha256="0qa31z0wgl8bgc3ihgbfdmp1ang3wyy4qylj81zxh1yn2zxx5fr0"; depends=[ggplot2 htmltools httr rjson]; }; + SkyWatchr = derive2 { name="SkyWatchr"; version="0.5-1"; sha256="0mza2r80wsa091ry0rcx9x29k9v0kfk4gnafmpw6pah3bgpd2lk8"; depends=[htmlTable httr sp]; }; + Sleuth2 = derive2 { name="Sleuth2"; version="2.0-4"; sha256="18mh1svmb96hw3rjmgxlwzs7kdcvjkxf4zm8k4w0sxz94ks062i7"; depends=[]; }; + Sleuth3 = derive2 { name="Sleuth3"; version="1.0-2"; sha256="0b4g7j8a204wyvh0q9n1l4zrl9rk7ibyfijd49mjjdyg9zz4kbna"; depends=[]; }; + SmartSVA = derive2 { name="SmartSVA"; version="0.1.1"; sha256="1c35y20llycxs41pkjmb7b74cmspmcwwi98r8r5q6s1vgbzn96zr"; depends=[isva Rcpp RcppEigen sva]; }; + SmartSifter = derive2 { name="SmartSifter"; version="0.1.0"; sha256="16rzma87k27qg6qy39mzywdj8pzkp7r9q7bpqyikazp3fk2nmfri"; depends=[mvtnorm rootSolve]; }; + SmarterPoland = derive2 { name="SmarterPoland"; version="1.7"; sha256="03vs6hcd96va9kfhl2yq77alnm33j1dxy79kgrx17hlijsy65qqv"; depends=[ggplot2 htmltools httr jsonlite rjson]; }; + Smisc = derive2 { name="Smisc"; version="0.3.6"; sha256="0knrgq6831rwr48880kvsmrl6c943nw3nkzds0sh63ljw0dp5ja7"; depends=[doParallel plyr]; }; SmithWilsonYieldCurve = derive2 { name="SmithWilsonYieldCurve"; version="1.0.1"; sha256="0qvhd1dn2wm9gzyp6k7iq057xqpkngkb4cfmvmjqmf0vhysp371w"; depends=[]; }; SmoothHazard = derive2 { name="SmoothHazard"; version="1.2.3"; sha256="0p6hnq782d5qwmq6ak2rmbzx84lrsy02lr303gg3y0vln5i2myyn"; depends=[lava mvtnorm prodlim]; }; + SnakeCharmR = derive2 { name="SnakeCharmR"; version="1.0.4"; sha256="06wzyjpzqclf794lapr67g8qrk9y253gksidpcgn8fmfz5443mrp"; depends=[jsonlite Rcpp stringr]; }; SnowballC = derive2 { name="SnowballC"; version="0.5.1"; sha256="0kbg33hy6m2hv9jspyx6naqmk2q6h2zmvvczjmkwqvlhzlj0c5s4"; depends=[]; }; SoDA = derive2 { name="SoDA"; version="1.0-6"; sha256="0sh2dan4ga2k14rirnkvgzsvbksx1k4ika5gkf5cy247rjkqnpj0"; depends=[]; }; - SocialMediaLab = derive2 { name="SocialMediaLab"; version="0.19.0"; sha256="1zskfncg3dqg7bcw7ck33xqz5w05sz0xi4ajfalzzsmr1sbmh6wj"; depends=[bitops data_table Hmisc httpuv httr igraph instaR plyr RCurl Rfacebook rjson stringr tm twitteR]; }; - SocialMediaMineR = derive2 { name="SocialMediaMineR"; version="0.3"; sha256="10208x0173glbb53997qa8fm57qpqzkwh0d42wk9izdb0k8l2fd1"; depends=[httr jsonlite RCurl]; }; + SocialMediaLab = derive2 { name="SocialMediaLab"; version="0.23.0"; sha256="1a62yklhyvcgsw50yg8r9cvdj54pi9ckzg0ms6v7zdbcd0k0nfbm"; depends=[bitops data_table Hmisc httpuv httr igraph instaR plyr RCurl Rfacebook rjson stringr tm twitteR]; }; + SocialMediaMineR = derive2 { name="SocialMediaMineR"; version="0.4"; sha256="0hd05rm7qn2w8rqx7pw996wpgb2rymcwzmns8xyczcyn81vjx8z8"; depends=[httr jsonlite RCurl]; }; SocialNetworks = derive2 { name="SocialNetworks"; version="1.1"; sha256="0d868xka6d35i17r28cvm0ya971xk6y1kycsfff0279w27cjd9x0"; depends=[Rcpp]; }; SocialPosition = derive2 { name="SocialPosition"; version="1.0.1"; sha256="1rrrjlq6czzhzipvkisbq024ca22v2vzx7wa4ddr9j7hnyyzzpic"; depends=[]; }; - Sofi = derive2 { name="Sofi"; version="0.0.26"; sha256="0jcnwy308h8qdswapdqpphdx5757a4a6bmrdmyzh0ny52a4w07n1"; depends=[foreign sampling shiny]; }; + Sofi = derive2 { name="Sofi"; version="0.16.4.8"; sha256="0h9ir0xrwmsabfhwsr9hbpwabh1fsb3p51y8qcgm92iyvc6dl3mf"; depends=[foreign sampling shiny]; }; SoftClustering = derive2 { name="SoftClustering"; version="1.1502"; sha256="1pgg9mjpfw55m3ny726vx5wl8gwsdkrxv8xzgmy3aqdlwzhh4bwz"; depends=[]; }; SoilR = derive2 { name="SoilR"; version="1.1-23"; sha256="1cryypgnbck5hvkc2izrd8r10q2b97f2p1s46x4dk8p099gck5wg"; depends=[deSolve RUnit]; }; SortableHTMLTables = derive2 { name="SortableHTMLTables"; version="0.1-3"; sha256="1jgrqsm0cj8qlk0s4qn3b83w96mgpp5gmhgcg9q2glc72v8c4ljh"; depends=[brew testthat]; }; SoundexBR = derive2 { name="SoundexBR"; version="1.2"; sha256="0chc332v3wcz30v70yvdxhvcfdmvf4fj193cn00gl899xfxal89p"; depends=[]; }; - SoyNAM = derive2 { name="SoyNAM"; version="1.2"; sha256="0y6iarjn1jiv5rscrszc1fg5m0jdhi5w5qwv4b0bvnh42hjb5rzb"; depends=[lme4 NAM reshape2]; }; - SpaDES = derive2 { name="SpaDES"; version="1.1.1"; sha256="0d09z7plh1sc331b9r6klxq0k587x882sm9g6imdggzyq1m990l7"; depends=[archivist CircStats data_table DiagrammeR digest dplyr ff ffbase fpCompare ggplot2 gridBase httr igraph lazyeval lubridate R_utils RandomFields raster secr sp stringi stringr]; }; + SoyNAM = derive2 { name="SoyNAM"; version="1.3"; sha256="128iq8rrj6nm8zdqrv17gsjxzdsfashgzk1k7lnw38w04a2g05zs"; depends=[lme4 NAM reshape2]; }; + SpATS = derive2 { name="SpATS"; version="1.0-5"; sha256="0nxv6mnbwd1a9yh883dqhcz6qnjznqc7q6c43s23lggj9wmjlzwj"; depends=[data_table fields plot3Drgl spam]; }; + SpaCCr = derive2 { name="SpaCCr"; version="0.1.0"; sha256="0qm1fr6nnax3i1i77fi73x1z8db557avh6kivs0nskb1dfj8ri4m"; depends=[abind dplyr ggplot2 Rcpp RcppArmadillo tidyr]; }; + SpaDES = derive2 { name="SpaDES"; version="1.3.1"; sha256="0a2s0smd0m3dmrjl88hm7dnkv6src96v00bhllc42sq6vq81iwsf"; depends=[archivist chron CircStats data_table DEoptim DiagrammeR digest dplyr DT ff ffbase fpCompare ggplot2 gridBase httr igraph lazyeval lubridate miniUI R_utils RandomFields raster RColorBrewer rstudioapi shiny sp stringi stringr]; }; + SpaTimeClus = derive2 { name="SpaTimeClus"; version="1.0"; sha256="1l204b8yd11pxwcb026xy39f4lps4sqk6mml8cybnjch8clk9djc"; depends=[Rcpp RcppArmadillo]; }; + SpadeR = derive2 { name="SpadeR"; version="0.1.1"; sha256="0iy2rkq4vvps1a73kqq37zpsyl4pvl3vh07dwvpfhvp7f8nxbx99"; depends=[]; }; SparseFactorAnalysis = derive2 { name="SparseFactorAnalysis"; version="1.0"; sha256="0lgfvydxb86r5hks1mf0p0yhgpx8s8fbkc3q6dimc728rw26qcv5"; depends=[directlabels ggplot2 MASS proto Rcpp RcppArmadillo truncnorm VGAM]; }; SparseGrid = derive2 { name="SparseGrid"; version="0.8.2"; sha256="057xbj2bhjm9i32kn39iscnqqdsvsmq0b8c92l8hnf9avf1sx10x"; depends=[]; }; SparseLearner = derive2 { name="SparseLearner"; version="1.0-2"; sha256="1qxycxpch2m2yyk97210gdzsizhlinc0hkhk5ak00rdgkrsxxc0k"; depends=[glmnet lqa mlbench qgraph RankAggreg SIS SiZer]; }; - SparseM = derive2 { name="SparseM"; version="1.7"; sha256="0s9kab5khk7daqf6nfp1wm1qnhkssnnwnymisfwyk3kz4q5maqfz"; depends=[]; }; - SparseTSCGM = derive2 { name="SparseTSCGM"; version="2.2"; sha256="0a1iscn4l587hn582hx4v8fawn6d9gg1m173fc0bsfpkyckgq8hx"; depends=[abind flare glasso longitudinal MASS mvtnorm network]; }; - SpatPCA = derive2 { name="SpatPCA"; version="1.1.1.0"; sha256="0k9y4lm8ixvb571vab9lj3yblqshyb0p848dcc1g7jxibxwv4245"; depends=[Rcpp RcppArmadillo RcppParallel]; }; + SparseM = derive2 { name="SparseM"; version="1.74"; sha256="1fpfhld887y5lyb8jydprmv5krqm1fk6n53z942b4g4z1v4g04j7"; depends=[]; }; + SparseTSCGM = derive2 { name="SparseTSCGM"; version="2.5"; sha256="004hbk5fdd5b5hdvg25wl1908pfya26brm2pz00zypfvis99lps3"; depends=[abind flare glasso longitudinal MASS mvtnorm network QUIC]; }; + SpatMCA = derive2 { name="SpatMCA"; version="1.0.0.1"; sha256="06l2ayjwawjp1kap76jqbnbjhx7x27z7vfn5jd0pz4g764krpfdr"; depends=[fields Rcpp RcppArmadillo RcppParallel]; }; + SpatPCA = derive2 { name="SpatPCA"; version="1.1.1.1"; sha256="0yk6sisl07wqrl16mzk6ch7567l87qrqlnzg976zq2s58cd6y3vh"; depends=[Rcpp RcppArmadillo RcppParallel]; }; SpatialEpi = derive2 { name="SpatialEpi"; version="1.2.2"; sha256="172i4khjb2fh818bq7wdfdm79fwxjwi60nqfj69dgbgcaww55ffr"; depends=[maptools MASS Rcpp RcppArmadillo sp spdep]; }; SpatialExtremes = derive2 { name="SpatialExtremes"; version="2.0-2"; sha256="0ywybk9gziy2hzb1ks88q4rzs3lzzy6y3fzhja2s39ngg195hi6l"; depends=[fields maps]; }; SpatialNP = derive2 { name="SpatialNP"; version="1.1-1"; sha256="108gxk0gbbjck9bgxvqb9h216ww21lmh2by0hrhzwx5r63hhcbmd"; depends=[]; }; SpatialPack = derive2 { name="SpatialPack"; version="0.2-3"; sha256="1gs0x3wj3hj663m6kszwhy3ibcx0lrslr127miy1rhz8683ij71c"; depends=[]; }; - SpatialPosition = derive2 { name="SpatialPosition"; version="1.1"; sha256="07lcn2xq6aan4n7kdldzy5sbdl1jsab7j4zz7fvplr1n2hh41m03"; depends=[raster sp]; }; + SpatialPosition = derive2 { name="SpatialPosition"; version="1.1.1"; sha256="1fbch16qmp8xnlkl7crydn1rh5gj49zlii6c9va5l7zp5wf8cl87"; depends=[raster rgdal rgeos sp]; }; SpatialTools = derive2 { name="SpatialTools"; version="1.0.2"; sha256="0n8l4k0dm9gwirhxwrajv5gx502px9qzlqi6skzx0k32hmymnazh"; depends=[Rcpp RcppArmadillo spBayes]; }; - SpatialVx = derive2 { name="SpatialVx"; version="0.4"; sha256="1kll0q9rkdwd4b003w2967jyz4yan1ypb0f9biwm2jjxxdqy058d"; depends=[boot CircStats distillery fastcluster fields maps smatr smoothie spatstat turboEM waveslim]; }; + SpatialVx = derive2 { name="SpatialVx"; version="0.6"; sha256="1zjjdhfancjliz0pa0rdfbf26wdci1v3krb42bd99kb4crrk9291"; depends=[boot CircStats distillery fastcluster fields maps smatr smoothie spatstat turboEM waveslim]; }; SpatioTemporal = derive2 { name="SpatioTemporal"; version="1.1.7"; sha256="0rc5zf8cnjw59azgqmslfz2dl5i17dfmb7ls5c849qybp2gn2zdv"; depends=[MASS Matrix]; }; SpecHelpers = derive2 { name="SpecHelpers"; version="0.2.2"; sha256="1hwlyjpgzf2wgigbc49xcqhf6rzrjzkbriwa4i9gwpa0bnrs4wp1"; depends=[gsubfn splancs]; }; - SpeciesMix = derive2 { name="SpeciesMix"; version="0.3.1"; sha256="0wl15k00d7n9pmnp1kr28p05z4vrziprcdndw77kwkcgv51cvllk"; depends=[MASS numDeriv]; }; - SpecsVerification = derive2 { name="SpecsVerification"; version="0.4-1"; sha256="0ps1v5vp5ksi0xrykdizjkkylzsacdczbpncdj9d6khmbvvqi15p"; depends=[]; }; + SpeciesMix = derive2 { name="SpeciesMix"; version="0.3.4"; sha256="0d6hfmzxqcvg4fcvpsfxx36k95fwkws4rlylrixikndj2fncgwb5"; depends=[MASS numDeriv]; }; + SpecsVerification = derive2 { name="SpecsVerification"; version="0.5-0"; sha256="02mwl7kv784wdf3v6f15vbjd8sa1mh8ms11k19bjj3qci9xnx4jw"; depends=[Rcpp RcppArmadillo]; }; + SpectralMap = derive2 { name="SpectralMap"; version="1.0"; sha256="15689023k9jzg3s7bx5m97dmn00z876amqhxsxksy8n8wf09wr57"; depends=[fields scatterplot3d]; }; SpherWave = derive2 { name="SpherWave"; version="1.2.2"; sha256="1wd9pql97m1zl0axzpkfq9sxadrm5cfax0gxh0ncqadaq7w7lml4"; depends=[fields]; }; - SphericalCubature = derive2 { name="SphericalCubature"; version="1.0.1"; sha256="0j592zvs07yc6amahlxgdw0k1vqr89gvcq22vcwzkx62igvlf6pv"; depends=[cubature]; }; + SphericalCubature = derive2 { name="SphericalCubature"; version="1.3"; sha256="195is72nj1vbhdx3yqmklmc9hqaaxvipgmcxszgvnqdv5bsiypgw"; depends=[abind cubature mvmesh SimplicialCubature]; }; SphericalK = derive2 { name="SphericalK"; version="1.2"; sha256="18py4ylm10s75pihjvcy7w948379zy9l9azriw7g7pyp7px29wda"; depends=[]; }; SportsAnalytics = derive2 { name="SportsAnalytics"; version="0.2"; sha256="1vb080ak1mfvr6d0q9i3r8hd547ba80bavjdcri0gclqqcjf1ach"; depends=[]; }; + SqlRender = derive2 { name="SqlRender"; version="1.2.0"; sha256="1ijp29skqpb9c1h3a3qby9511qfnawsbz8bg6kdl9cclww7a90ij"; depends=[rJava]; }; StAMPP = derive2 { name="StAMPP"; version="1.4"; sha256="0rmp5l50dkkldq9xc1abhdxjhbwlqk3i3g0d8w3xissidnz5n31b"; depends=[adegenet doParallel foreach pegas]; }; StMoMo = derive2 { name="StMoMo"; version="0.3.1"; sha256="0ly1bznixw4qbnag56xykj8gnfrzhqh5blsii32paalk0n920mrm"; depends=[fanplot fields forecast gnm MASS RColorBrewer reshape2 rootSolve]; }; StMoSim = derive2 { name="StMoSim"; version="3.0"; sha256="18mdgpn0x6338zzvc7nwccz6ypqmlpv7pzcy5fwx5y2wfkmdp4rm"; depends=[Rcpp RcppParallel]; }; - StableEstim = derive2 { name="StableEstim"; version="2.0"; sha256="080khfix88j4656hmdy9l0xpbk9zzw7z7d7f6yvwsbalk3ag18i5"; depends=[fBasics MASS Matrix numDeriv stabledist testthat xtable]; }; + StVAR = derive2 { name="StVAR"; version="1.1"; sha256="0wz5f5i9927fs1s8yczwqs022k912220m28l1sv5f0r081iv656i"; depends=[ADGofTest matlab MCMCpack numDeriv]; }; + StableEstim = derive2 { name="StableEstim"; version="2.1"; sha256="0agi3bfp1xy5pfxxb9ib6xn434agmplgn7kg47nhbh47vf57vang"; depends=[fBasics MASS Matrix numDeriv stabledist testthat xtable]; }; Stack = derive2 { name="Stack"; version="2.0-1"; sha256="09fgfhw9grxnpl5yg05p9gvlz38iw4prns1jn14nj3qx01k5rnxb"; depends=[bit ff ffbase plyr stringr]; }; - StanHeaders = derive2 { name="StanHeaders"; version="2.9.0"; sha256="0hpshkf688qgrrclvpy23waa8ijlxzr51frpzhbj0igwykqjpwji"; depends=[]; }; + StagedChoiceSplineMix = derive2 { name="StagedChoiceSplineMix"; version="1.0.0"; sha256="1008gm6zv5k8lpv0qg42qjriajmx0n4kshjh76mvx91dpi788ivh"; depends=[plyr]; }; + StanHeaders = derive2 { name="StanHeaders"; version="2.14.0-1"; sha256="18x23a7nmj5497g3i6a01cv5g34p0xdkb6srf9nwisbhshz25mxl"; depends=[]; }; StandardizeText = derive2 { name="StandardizeText"; version="1.0"; sha256="0s267k2b109pcdiyd26gm4ag5afikrnnb55d3cs6g2fvzp744hfp"; depends=[]; }; Stat2Data = derive2 { name="Stat2Data"; version="1.6"; sha256="0pk68ffc6ffpddfpf9wi8ch39h6k3r80kldld3z5pnql18rc8nvx"; depends=[]; }; StatDA = derive2 { name="StatDA"; version="1.6.9"; sha256="01bjygis14b3yfsfkjbvy0zlhjxysjf46cfcw8p4a4lwik3qp03b"; depends=[cluster e1071 geoR MASS MBA mgcv rgl robustbase sgeostat xtable]; }; StatDataML = derive2 { name="StatDataML"; version="1.0-26"; sha256="1lcckapbhqdbg6alnhm2yls66lnkxnxamdlzx6pbfqv1dhsy36gf"; depends=[XML]; }; - StatMatch = derive2 { name="StatMatch"; version="1.2.4"; sha256="0h5b26qqjpxr9bzrbhmbla24dh3ni4z531951aa1frjvi8krv18r"; depends=[clue lpSolve proxy RANN survey]; }; + StatMatch = derive2 { name="StatMatch"; version="1.2.5"; sha256="1162yqqrxkbpchdxdibpk5ccv55krvh9j150jgr047zzghr9ansa"; depends=[clue lpSolve proxy RANN survey]; }; StatMeasures = derive2 { name="StatMeasures"; version="1.0"; sha256="1bnbz803xx8kqhy1cx545b35si6f10za0mp5z82qfvd4kv9a9izz"; depends=[data_table]; }; StatMethRank = derive2 { name="StatMethRank"; version="1.3"; sha256="1jn7xg6f78lhpcd1b2bvjm90yws52klqz625lkwvwfmchwqrxi0i"; depends=[MASS pmr Rcpp rjags]; }; StatRank = derive2 { name="StatRank"; version="0.0.6"; sha256="14d8v3bp8vgksi6q0mxajwd9s8zi6lns3qwi1vcr5xp9rjp4n6iy"; depends=[ggplot2 plyr truncdist]; }; - Statomica = derive2 { name="Statomica"; version="1.0"; sha256="0x60n1d7wxfd013k6jjzvfi2mqgr52fd8ylk3yhm3907002jnh1g"; depends=[Biobase distr fBasics multtest]; }; SteinIV = derive2 { name="SteinIV"; version="0.1-1"; sha256="1bm4lc7g9h9jkb1dpzb84289bwxcywp0a8vylv6ipvhiqbqk5d95"; depends=[]; }; Stem = derive2 { name="Stem"; version="1.0"; sha256="1fr02mi5qyxbqavdh2hg8ggw4nfjh3vs7g0vh834h6y0v53l71r5"; depends=[MASS mvtnorm]; }; - StereoMorph = derive2 { name="StereoMorph"; version="1.5"; sha256="1y9mflfpysri4abghvp550m1p0r33k75n6q01wihbip157iqf9pz"; depends=[bezier jpeg png Rcpp rjson shiny svgViewR tiff]; }; + StepwiseTest = derive2 { name="StepwiseTest"; version="1.0"; sha256="1fdm4s9l6grgd45r98ybbsh40rnmnn16c0id6lv28cpmssi0iphi"; depends=[Rcpp RcppArmadillo]; }; + StereoMorph = derive2 { name="StereoMorph"; version="1.6"; sha256="17c8r50i9wlvsq6gha56a4mhq84cmqm82j98zg4lb96jpydcp4dr"; depends=[bezier jpeg png Rcpp rjson shiny svgViewR tiff]; }; StockChina = derive2 { name="StockChina"; version="0.3.1"; sha256="1myxyfchnkskyqb5yciw1wfk3006f51y89ipzfjzdlfyzwy1lsp1"; depends=[]; }; Storm = derive2 { name="Storm"; version="1.2"; sha256="1fg8y9my9yp6px1gh43mr3m2s2z262mzq03pj52mqg3n186vk8z3"; depends=[permute rjson]; }; StrainRanking = derive2 { name="StrainRanking"; version="1.1"; sha256="0q6k90if74320mrs2ccq2izynylr8zakciwbc2c6ms0v57aalwic"; depends=[]; }; - StratSel = derive2 { name="StratSel"; version="1.1"; sha256="0l08v71qmd170027y5vjnvgfm8kqvgaqrpms9msxhv8g5974kla8"; depends=[Formula MASS memisc mnormt]; }; - StreamMetabolism = derive2 { name="StreamMetabolism"; version="1.1.1"; sha256="1r9p6awf3a2d08w9rdlggkwlfhksn14xbhdhdnmxz79ym5mgdd8f"; depends=[chron maptools zoo]; }; - StressStrength = derive2 { name="StressStrength"; version="1.0.1"; sha256="15sgdisgz8zcq4i9z4zm7isr5ckyd7bk6yl1g7a5kngams282ipx"; depends=[]; }; + StratSel = derive2 { name="StratSel"; version="1.2"; sha256="11dkhyh0xgl23f9ksxcjl6bqfhwm6k6i1chgx23dvjifbm6s5s5p"; depends=[Formula MASS memisc mnormt pbivnorm]; }; + Strategy = derive2 { name="Strategy"; version="1.0.0"; sha256="1s89rl6h68sn8px3g7bhhrwmn6k4kmdqhiz0d39xr3kgpfpvi5i2"; depends=[xts zoo]; }; + StratifiedBalancing = derive2 { name="StratifiedBalancing"; version="0.2.0"; sha256="0iwzvschncb2vrmsawb6i94shn2cjbkph854x1z4ykr6ddw411g2"; depends=[plyr]; }; + StreamMetabolism = derive2 { name="StreamMetabolism"; version="1.1.2"; sha256="1sv30i7armk7jhxg5x9lh0r9qq3xixn1k2h0q89halkh1yraal8a"; depends=[chron maptools zoo]; }; + StressStrength = derive2 { name="StressStrength"; version="1.0.2"; sha256="1fq26bzmwsk4nzz9bgasyxz9alw8x2ssahz67mham7vw483w79pd"; depends=[]; }; + StroupGLMM = derive2 { name="StroupGLMM"; version="0.1.0"; sha256="1w0xizdmwqflfhqwygyq7fw5ci7pdzmr8dfv3j0g3ljbj84kndzd"; depends=[aod broom car ggplot2 lme4 lmerTest lsmeans MASS mutoss nlme pbkrtest phia survey]; }; + StructFDR = derive2 { name="StructFDR"; version="1.0"; sha256="13f9y6l7pcjmgyvhhk7qcl6k4j0krmg5m2bn3faq5ijpasw7m56x"; depends=[ape cluster nlme]; }; SubCultCon = derive2 { name="SubCultCon"; version="1.0"; sha256="08q6k4nsv3gl5qk87s87smdg047yc2a4i7kg0fp08i7q7h62jkvz"; depends=[]; }; SubLasso = derive2 { name="SubLasso"; version="1.0"; sha256="12m7ynlqhikjhavd12bhsd04s9cpv8aq5xgm875i10mb3ldpd1bd"; depends=[glmnet gplots psych]; }; + SubVis = derive2 { name="SubVis"; version="2.0.1"; sha256="1r9i27hx8xj8f3mhbm8ygcxwpq1lzxm26vay5mqk4q9swskg1vbh"; depends=[Biostrings shiny]; }; SubpathwayGMir = derive2 { name="SubpathwayGMir"; version="1.0"; sha256="1rw94idhbnaszr2xv1wgnjcxlnxkml912pvmqh2a1nqpwca5mscy"; depends=[igraph XML]; }; SubpathwayLNCE = derive2 { name="SubpathwayLNCE"; version="1.0"; sha256="051csjavr9549y54yirfdn266i7swsvpbcakhziyz4sl4afwx5kl"; depends=[BiasedUrn graph igraph RBGL]; }; Sunder = derive2 { name="Sunder"; version="0.0.4"; sha256="1na41nnscyc4v1qbwzfgqk503r39xxbi6f446pscrz3v0v121f1a"; depends=[mnormt]; }; SunterSampling = derive2 { name="SunterSampling"; version="1.0.1"; sha256="0qfld3j8xlpgp7c58zqw6gzm38m4d740lvdj5vmcflfcc6ja98sf"; depends=[]; }; SuperExactTest = derive2 { name="SuperExactTest"; version="0.99.2"; sha256="0z9yhaz81l30i7ahjz1gxl7x4c0dqyny8ynpckjm8vwsvpr9y9yf"; depends=[]; }; - SuperLearner = derive2 { name="SuperLearner"; version="2.0-19"; sha256="0dp4gqhvksw83asnbf46yd4z1yr1x4yd6b9c8gqjxkwp7bd0kgwb"; depends=[cvAUC nnls]; }; - SuppDists = derive2 { name="SuppDists"; version="1.1-9.2"; sha256="0pkn1jf94hpilpxh82g0llhk4kdrx0zgvczxx3k24z25m6f5kk7h"; depends=[]; }; - Surrogate = derive2 { name="Surrogate"; version="0.1-69"; sha256="04r1zbw8zxbzwfh73s48hpvvbd34073xgmqkpsg2g9xyg9ispzn8"; depends=[lattice latticeExtra lme4 logistf MASS msm nlme OrdinalLogisticBiplot rgl rms survival]; }; + SuperLearner = derive2 { name="SuperLearner"; version="2.0-21"; sha256="0j349yv510s1qjkpks24qrfgr2bip1m70i5dh9ydlna280k43dbh"; depends=[cvAUC nnls]; }; + SuperRanker = derive2 { name="SuperRanker"; version="1.0.1"; sha256="0s5d38xaan4jznb3nlr9rj054haf6wks0229lggykj8mfz746wky"; depends=[prodlim Rcpp]; }; + SuppDists = derive2 { name="SuppDists"; version="1.1-9.4"; sha256="1ffx8wigqqvz2pnh06jjc0fnf4vq9z2rhwk2y3f9aszn18ap3dgw"; depends=[]; }; + Surrogate = derive2 { name="Surrogate"; version="0.1-79"; sha256="1ilh9w6v73aafsxcanhdjz2whsng2vyhkv240smmqifcl93kl208"; depends=[lattice latticeExtra lme4 logistf MASS mixtools msm nlme OrdinalLogisticBiplot rgl rms survival]; }; SurvCorr = derive2 { name="SurvCorr"; version="1.0"; sha256="01rqdl503q1qnkn49iqnsjzis6azdsfi6s2hjky5k2zd6c9g18k5"; depends=[fields survival]; }; + SurvDisc = derive2 { name="SurvDisc"; version="0.1.0"; sha256="0iqjimrljh9iaw3s406v6j03xg62ysf9xdia1yxr2ray38j8148c"; depends=[cubature MASS mvtnorm nlme simex survival]; }; SurvLong = derive2 { name="SurvLong"; version="1.0"; sha256="000ywg0sdk9kailiy7ckhq4mkaawl9hh88w6apj5khgpxsyj8aw3"; depends=[]; }; SurvRank = derive2 { name="SurvRank"; version="0.1"; sha256="1i08yjprzd9irs46rifa5fsmmhwbsf4py0m8qp5rprznyr8504y3"; depends=[doParallel foreach ggplot2 glmnet gplots ipred mboost randomForestSRC reshape rpart sampling survAUC survival]; }; SurvRegCensCov = derive2 { name="SurvRegCensCov"; version="1.4"; sha256="0ipr7lajnrklk963lrlgx946l6r191q3bfif4njkdmw0x797nzm2"; depends=[numDeriv survival]; }; Survgini = derive2 { name="Survgini"; version="1.0"; sha256="1gxkdv2j1njbgnwb52vyhz7p2lrcg3hp6sry3kyhp4wkvf6gnhxi"; depends=[survival]; }; SvyNom = derive2 { name="SvyNom"; version="1.1"; sha256="1jym2x6nd9a3y7nk5hflqpy54gs67y4sqqspkvkalf5l2cc64did"; depends=[Hmisc rms survey survival]; }; - SwarmSVM = derive2 { name="SwarmSVM"; version="0.1"; sha256="10gsasllycnmgaf5xq44ph5x7ajh38cnfd97x4hyc6bk4wz7p42r"; depends=[BBmisc checkmate e1071 kernlab LiblineaR Matrix SparseM]; }; - SweaveListingUtils = derive2 { name="SweaveListingUtils"; version="0.6.2"; sha256="0n15gkiil9rlb0dhnkfimhcs09av35b7qx79iba7bx3y7spvzaqy"; depends=[startupmsg]; }; + SwarmSVM = derive2 { name="SwarmSVM"; version="0.1-2"; sha256="1997nbczgf5xkvj257fa211wxl85lq4jpybjl2q4hajn05ahq7yp"; depends=[BBmisc checkmate e1071 kernlab LiblineaR Matrix SparseM]; }; + SweaveListingUtils = derive2 { name="SweaveListingUtils"; version="0.7.5"; sha256="0b975il4pfnxw709ar74w49k18b6znrjrm71vw6xl0qid8xwqpfa"; depends=[startupmsg]; }; SwissAir = derive2 { name="SwissAir"; version="1.1.4"; sha256="1avc32q7nbwjkcbml7z05car6khv1ghcz3miw0krm8i53w032c6f"; depends=[]; }; SyNet = derive2 { name="SyNet"; version="2.0"; sha256="0mb9dscddkvmkf7l3bbcy4dlfmrvvy588vxdqy5dr783bpa5dkiw"; depends=[tkrplot]; }; SyncMove = derive2 { name="SyncMove"; version="0.1-0"; sha256="1jlnsj5v8y5pijfkww7ng7nkwvj93naw29wcxxj130ww5qk7qk1z"; depends=[]; }; + SyncRNG = derive2 { name="SyncRNG"; version="1.2.1"; sha256="0360pdx2p8a6519y3ik5xfdm2yxndyl31p3bb73nj4ihmr4w6lmj"; depends=[]; }; SynchWave = derive2 { name="SynchWave"; version="1.1.1"; sha256="127hllvig8kcs9gr2q14crswzhacv6v2s4zrgj50qdyprj14is18"; depends=[fields]; }; SynergizeR = derive2 { name="SynergizeR"; version="0.2"; sha256="0z32ylrjjvp8kr6lghhg57yq1laf9r0h8l3adysvis8bbpz2q2sj"; depends=[RCurl RJSONIO]; }; Synth = derive2 { name="Synth"; version="1.1-5"; sha256="1cfvh91nz6skjk8jv04fhwv3ga9kcsfgq3mdy8lx75jkx16zr0pk"; depends=[kernlab optimx]; }; - TAM = derive2 { name="TAM"; version="1.17-0"; sha256="1xi5i79s7wrsfds3pn1lzla82qnb8miw8jlb94h6iyy9qr1xgr95"; depends=[CDM GPArotation lattice lavaan MASS msm mvtnorm plyr psych Rcpp RcppArmadillo sfsmisc tensor WrightMap]; }; + T2EQ = derive2 { name="T2EQ"; version="1.1"; sha256="1skkkryw63pfx1xslia1lczb2psja6v6hcbph4isdcksb4l4pcig"; depends=[]; }; + TAM = derive2 { name="TAM"; version="1.99993-0"; sha256="1n5xs7s1rkn4y0317pkzg1dwdf7r5fm8wkaf0d3jvrz80g6cqbin"; depends=[CDM GPArotation lattice lavaan MASS msm mvtnorm plyr psych Rcpp RcppArmadillo sfsmisc tensor WrightMap]; }; + TANDEM = derive2 { name="TANDEM"; version="1.0.0"; sha256="1zrx5zbfz0zrw46iziqnb11m75ri75dw1x88fd2dhw22am3q2940"; depends=[glmnet Matrix]; }; TANOVA = derive2 { name="TANOVA"; version="1.0.0"; sha256="0c2mrahchwagisrkjl5l1s0mv0ny80kngq8dz0fjj9lwxwqwvwa5"; depends=[MASS]; }; - TAQMNGR = derive2 { name="TAQMNGR"; version="2015.2-1"; sha256="0j7qb15xy4g4ff0cmyjyz4lsalaxxf6zdwbq49j3y80ld0pvwhbk"; depends=[Rcpp]; }; + TAQMNGR = derive2 { name="TAQMNGR"; version="2016.12-1"; sha256="1b3v30zi6ssac866grhgki2bpzbk06pd8vrfya3zcc5anry699bm"; depends=[Rcpp]; }; TBEST = derive2 { name="TBEST"; version="5.0"; sha256="15piy507vv8x59xgga17splxszy0vm87qjbfgxycvba633jishsa"; depends=[fdrtool signal]; }; - TBSSurvival = derive2 { name="TBSSurvival"; version="1.2"; sha256="12ipgffympqjjg8l9gbich5pgz0pqr5g07b0il26rr721xiyxk5v"; depends=[BMS coda mcmc normalp R_utils Rsolnp survival]; }; + TBSSurvival = derive2 { name="TBSSurvival"; version="1.3"; sha256="1r87qvnlvc18i12yi25lfpdb8b5p33fywi38hs2xp1y2vbvz5s9b"; depends=[BMS coda mcmc normalp R_utils Rsolnp survival]; }; TCGA2STAT = derive2 { name="TCGA2STAT"; version="1.2"; sha256="15a5lh0nrdcxdwj7wj5m9rsvk1ygpp6wdjb4swilk91rb1lblikv"; depends=[CNTools XML]; }; - TDA = derive2 { name="TDA"; version="1.4.1"; sha256="1nl7scnqb0qdpqjl259f6v3i8bqnh0a95a5navs7jlphlak0w6k9"; depends=[BH FNN igraph Rcpp scales]; }; + TCGAretriever = derive2 { name="TCGAretriever"; version="1.3"; sha256="0mi8j7k2b1sx75ka8ympydqpk8jqp8wz8dyf4vk4776fra7bq24p"; depends=[httr]; }; + TDA = derive2 { name="TDA"; version="1.5"; sha256="0rp41v0ihwan34bgb8bgzva5nk7lra0agfr9201ww6687mwakk9z"; depends=[BH FNN igraph Rcpp RcppEigen scales]; }; TDAmapper = derive2 { name="TDAmapper"; version="1.0"; sha256="0cxgr2888v8azgdr3sg4vlcdyivkrxkk6dsp1ahv4frrwvg2z09k"; depends=[]; }; TDCor = derive2 { name="TDCor"; version="0.1-2"; sha256="18085prcwhl5w717f1f7jcqskw2jvigvjjs2l5y6106ibiam6hxx"; depends=[deSolve]; }; TDD = derive2 { name="TDD"; version="0.4"; sha256="193y8brybkjsajrbnlx1sdnw1wyyn9rhlm5wvp4aamqhvi8z13vn"; depends=[pracma RSEIS signal]; }; - TDMR = derive2 { name="TDMR"; version="1.3"; sha256="0bbd2an18ayxaxprsjqrybb877lkk74dpxbvbv7qdwc1ivqm8g96"; depends=[adabag SPOT testit twiddler]; }; - TDboost = derive2 { name="TDboost"; version="1.1"; sha256="1pyqssqxkr9bwyz4h1l5isbb78asmvddy20vyxq8snxra2r06hbf"; depends=[lattice]; }; + TDMR = derive2 { name="TDMR"; version="1.4"; sha256="1vaa75bazpk6fa34cahc597ifs307n4d8gq0r50q6rpm5rs0mnxx"; depends=[adabag SPOT testit twiddler]; }; + TDPanalysis = derive2 { name="TDPanalysis"; version="0.99"; sha256="1kyhs4rpkm3gr55l6hrz4xcb9igk95si1m1sp175580k16n885z0"; depends=[plyr]; }; + TDboost = derive2 { name="TDboost"; version="1.2"; sha256="0sc9vby4892gm5b5h8gbdl4misqvgbkfp8fms53dk83malxkw1zx"; depends=[lattice]; }; TED = derive2 { name="TED"; version="1.1.1"; sha256="0nb2arx7c1m8ymnkmj3jwbcw23vhkr1f3vlym2hqs0pq0lnsl4g0"; depends=[animation fields foreach geoR RcppArmadillo zoo]; }; - TEEReg = derive2 { name="TEEReg"; version="1.0"; sha256="1xpr4m8yamifjx7njb7dyqv51rsbjym9c5avflf69r9sazf3n503"; depends=[]; }; + TEEReg = derive2 { name="TEEReg"; version="1.1"; sha256="0v5qz3vvmcm3fh16kjb05j1r0yj23r7hrxf2www20ng3dmga5q0f"; depends=[]; }; + TELP = derive2 { name="TELP"; version="1.0"; sha256="0wzm3dz0489ha7dd6lkashvvjydck9jw2pavlx9plpksvzr4q9ph"; depends=[arules arulesViz ggplot2 gridExtra RColorBrewer tcltk2 tm wordcloud]; }; TEQR = derive2 { name="TEQR"; version="6.0-0"; sha256="112znsz36jqh3krnr4j05xl70picih8qpmqky2gllgyr8nky39fr"; depends=[]; }; TERAplusB = derive2 { name="TERAplusB"; version="1.0"; sha256="0mshx615awcf2arm39mgw2gzgpyn7a3f767484g7z4nqqlikwpgc"; depends=[]; }; TESS = derive2 { name="TESS"; version="2.1.0"; sha256="05xsz2v847pwj4ja7hmg3zfbfqrwwzpf0ri0gjzb8snm2a7xm23y"; depends=[ape coda deSolve Rcpp]; }; @@ -2532,69 +3110,79 @@ in with self; { TFDEA = derive2 { name="TFDEA"; version="0.9.8.3"; sha256="0qg4nhlqqj7hc8lg732zz8klbbp3yksnq8q8n4ml3jz8gadrpyj7"; depends=[lpSolveAPI]; }; TFMPvalue = derive2 { name="TFMPvalue"; version="0.0.6"; sha256="1892jmgqywm0jp5l5k88brp4h8szkbi9bxi0v1jni1929qnsmqyf"; depends=[Rcpp]; }; TFX = derive2 { name="TFX"; version="0.1.0"; sha256="0xrjdbvg0ng4i0s8ql1pfyma10x4n045spilkb05750677r5j44p"; depends=[XML]; }; - TH_data = derive2 { name="TH.data"; version="1.0-7"; sha256="03h7lr5nh8090w167y3pmpxa0na1mqq4g4k8vz3ypjxc9ls2dq99"; depends=[MASS survival]; }; + TH_data = derive2 { name="TH.data"; version="1.0-8"; sha256="17csnwyk2f3d47nghkfy9wly5kff8zhdcfwfml7509hjrjgi13s7"; depends=[MASS survival]; }; TIMP = derive2 { name="TIMP"; version="1.13.0"; sha256="0b6g2afwjz2m7bnfhx1pjmq6x1ghjxgrwi6hz1l867qa4i2yx5hx"; depends=[colorspace deSolve fields gclus gplots minpack_lm nnls]; }; TITAN2 = derive2 { name="TITAN2"; version="2.1"; sha256="0cxcgkf776411ln5wbfdyjxa42jw473vcq1kns6k6p8dpm1y91c2"; depends=[]; }; TInPosition = derive2 { name="TInPosition"; version="0.13.6"; sha256="1cxxrfpbiyknaivv6gyp79lz0rxwhrndcd054smksxq8zcfz0v7c"; depends=[ExPosition InPosition prettyGraphs TExPosition]; }; TKF = derive2 { name="TKF"; version="0.0.8"; sha256="1db87lwx26ayv1x2k8qd9dfr6j3jkvdl9ykisaxr42l6akqy21nr"; depends=[ape expm numDeriv phangorn phytools]; }; TLBC = derive2 { name="TLBC"; version="1.0"; sha256="08w187akbhfbz6nrrf7avf02lrhgj7bbrjmim9gkh4wlbjhzvw67"; depends=[caret HMM randomForest signal stringr]; }; - TLdating = derive2 { name="TLdating"; version="0.1.1"; sha256="1c2879981fs7c5yvh0arpnlx1rb8pi9gvn3g71fv486dzd83gknm"; depends=[gplots Luminescence]; }; - TMB = derive2 { name="TMB"; version="1.6.6"; sha256="0sxkzfdgjqy9pjkmmk1bxlsxfq25lqh5h3nd5ydv2rivnak2jp3g"; depends=[Matrix RcppEigen]; }; + TLMoments = derive2 { name="TLMoments"; version="0.6.3.1"; sha256="1rcix93s70lwjpmlfxqjrdphkp3p84pmxjxxchsm05qif7y6iwn1"; depends=[evd hypergeo Rcpp]; }; + TLdating = derive2 { name="TLdating"; version="0.1.3"; sha256="12lmakk1zd6wqh1318pnl14i7km2hynjn4ymchfjr2bwmp45c1ra"; depends=[gplots Luminescence]; }; + TMB = derive2 { name="TMB"; version="1.7.8"; sha256="0dwfz6js35wb28qah85m3y2ddkfbiy567402npmyqr4wrh8l37p3"; depends=[Matrix RcppEigen]; }; TMDb = derive2 { name="TMDb"; version="1.0"; sha256="0bbcmsv7b3vvskhdjww03gbcgql44vsvyjz2fajy9w2vgkr6ga90"; depends=[httr jsonlite]; }; TOC = derive2 { name="TOC"; version="0.0-4"; sha256="1c16d4wrzir6v3c323sck6r9yz6mv1a70xamlj5ha1ydmfixcza9"; depends=[bit raster rgdal]; }; - TP_idm = derive2 { name="TP.idm"; version="1.0"; sha256="1dgcalzhkhj4cn1yjf23q6cm527fgf083n7nw7201824g78566n5"; depends=[]; }; + TOSTER = derive2 { name="TOSTER"; version="0.1.3"; sha256="15a7g1ccxk9xjcs3gysq8h4p0gd7527yq5zy6k9ara68a8f2dz1r"; depends=[]; }; + TP_idm = derive2 { name="TP.idm"; version="1.2"; sha256="08n5bgc7gw1cbn9q7kd6jfxcwmb5mfjmdmhkhr35fi5ah21a57mh"; depends=[]; }; + TPEA = derive2 { name="TPEA"; version="3.0"; sha256="1ppy9jf0mb43vwnn5qd65g5dxf7wv3agf5rkldyas5y1ynsnbvlg"; depends=[foreach igraph Matrix MESS RCurl XML]; }; TPmsm = derive2 { name="TPmsm"; version="1.2.1"; sha256="1vynzb6qpp8785rdjyarhvwbkasviamhljjlnp4i0dds96wwdgx1"; depends=[KernSmooth]; }; - TR8 = derive2 { name="TR8"; version="0.9.13"; sha256="07wrqwa5gf1l1y3b07mganr5xkzxdzrh6lrv7gf01m9b7bsz564m"; depends=[gdata gWidgets gWidgetstcltk plyr rappdirs RCurl taxize XML]; }; - TRADER = derive2 { name="TRADER"; version="1.2-1"; sha256="01pv2bbz3w880pl15fspj22k7ji2lhk5xxav81j4aqm24hr4l0dp"; depends=[dplR]; }; - TRAMPR = derive2 { name="TRAMPR"; version="1.0-7"; sha256="135ylhijhpdxpznfdbdzwfsvy8bhw1yx28c3520a3lyrqvinpawg"; depends=[]; }; + TR8 = derive2 { name="TR8"; version="0.9.15"; sha256="16mijxxddvnr3ii4v0djx5l844bp36pypmqn2r6gp3jwp9jn8czx"; depends=[gWidgets gWidgetstcltk plyr rappdirs RCurl readxl reshape taxize XML]; }; + TRADER = derive2 { name="TRADER"; version="1.2-3"; sha256="1w9m2b866dyj82s118m64q8j9a1chpq2km2pnn9mfwwj8sivgdgn"; depends=[dplR]; }; + TRAMPR = derive2 { name="TRAMPR"; version="1.0-8"; sha256="0nxp8wdr7yx94fk14m0r4dh2jxcvjqp6lg02092zww5y7jlbf4ds"; depends=[]; }; TRD = derive2 { name="TRD"; version="1.1"; sha256="0bhn4bcrq39f5dgqc74jqsfhs1iqfxhawacqqyncbk2372013nqp"; depends=[Rlab]; }; - TROM = derive2 { name="TROM"; version="1.1"; sha256="090m6l9x3q203mb6c454ign82zwcxk2appx0z3kr7bqrap245s7n"; depends=[AnnotationDbi GO_db gplots gtools lattice openxlsx RColorBrewer topGO]; }; + TROM = derive2 { name="TROM"; version="1.2"; sha256="1gfnlchaa16q9cksrgdkissy2fz481bcbac0cmxnc4vb0vbnz4h5"; depends=[AnnotationDbi GO_db gplots gtools lattice openxlsx RColorBrewer topGO]; }; TRSbook = derive2 { name="TRSbook"; version="1.0.1"; sha256="1w2yl5pchw2vn9l3qnm1ra9mjy946i5xsxh5n5xdvrcj2kak50x5"; depends=[gdata IndependenceTests RColorBrewer xtable]; }; TSA = derive2 { name="TSA"; version="1.01"; sha256="0cm97hwxm6vfgy9mc3kgwq6dnmn86p8a4avnfjbai048qnwrn6hx"; depends=[leaps locfit mgcv tseries]; }; - TSHRC = derive2 { name="TSHRC"; version="0.1-3"; sha256="18ygg7bqwg1pdqi52l1lf33gcd277895rlf5853yzh7ln2ivssmi"; depends=[]; }; + TSHRC = derive2 { name="TSHRC"; version="0.1-4"; sha256="04pvh3vhgx3pj3sgkbxsqdwjglqbmaaj0rsb8b4q162bh608d9zl"; depends=[]; }; TSMining = derive2 { name="TSMining"; version="1.0"; sha256="1n32acagffiw31pr485ly3phx33zw7vj009bvw4lbqpixa1pszj2"; depends=[foreach ggplot2 plyr reshape2]; }; TSMySQL = derive2 { name="TSMySQL"; version="2015.4-1"; sha256="1gdda7li320ba9qfxfl5c4cwl2ln5jdbvid98cryj175g0nbmx7b"; depends=[DBI RMySQL tframe TSdbi TSsql]; }; - TSP = derive2 { name="TSP"; version="1.1-4"; sha256="17gv6kg0v8zirmgrmi61b3phjdb237z3jj5wxz1yn2m94halcnlj"; depends=[foreach]; }; + TSP = derive2 { name="TSP"; version="1.1-5"; sha256="03xxfr5kk4zhzpb1q1pwncdp0dhchm9b48wzhvvxn2dxf3mnby2w"; depends=[foreach]; }; TSPostgreSQL = derive2 { name="TSPostgreSQL"; version="2015.4-1"; sha256="11201zpbrva6gwc9hg8pynadrps6d8pb3syzba9nyjpv2ck6x3ry"; depends=[DBI RPostgreSQL tframe tframePlus TSdbi TSsql]; }; TSPred = derive2 { name="TSPred"; version="2.0"; sha256="0p4msk12n8jc1ss8p7m15rxd0ip7v83c5p78v26nk5dz21a4xprp"; depends=[forecast]; }; + TSS_RESTREND = derive2 { name="TSS.RESTREND"; version="0.1.02"; sha256="1rvxbzhdzjb4f3b4pk53iwv0vpw8s0z8k1fyfpcxvy333f68d59f"; depends=[bfast broom ggplot2 RcppRoll strucchange]; }; TSSQLite = derive2 { name="TSSQLite"; version="2015.4-1"; sha256="10z8s967wmapkb56hh2brb5bafgqr8flwh0sr72yqqv0ca2d06sc"; depends=[DBI RSQLite tframe tframePlus TSdbi TSsql]; }; TSTr = derive2 { name="TSTr"; version="1.2"; sha256="0nljkqsrwzg7i82arpfrz2k9m1k1akin1akf01c5cadxq4rgarsf"; depends=[data_table stringdist stringr]; }; TSTutorial = derive2 { name="TSTutorial"; version="1.2.3"; sha256="0hpk6k3lc72p8pdz5aad04lcjsz9k443h5gs09dc3i10wqw3yhxs"; depends=[MASS]; }; TSclust = derive2 { name="TSclust"; version="1.2.3"; sha256="0m04svw4z2rhvzyckn8l4pg4rmwfn8xlzd9k839c47ldbzgb4z6l"; depends=[cluster dtw KernSmooth locpol longitudinalData pdc wmtsa]; }; TScompare = derive2 { name="TScompare"; version="2015.4-1"; sha256="0jmxnrbsdg368f29bp70rc9i88si5zjblbcn8rcjyn2k9vpd3q2f"; depends=[DBI tfplot tframe TSdbi]; }; - TSdata = derive2 { name="TSdata"; version="2015.4-2"; sha256="1c0ly1gs6p3fspwvk1f6c2xgzvc7p7pkzakm44lisbyjklacnilp"; depends=[]; }; + TSdata = derive2 { name="TSdata"; version="2016.8-1"; sha256="199dy4phc6z0kzbp4kks55519c3xgsx4dkwrypr9sg8xhprrwnib"; depends=[]; }; TSdbi = derive2 { name="TSdbi"; version="2015.7-1"; sha256="00dasnkkxw9rg1wyx1i2sqjr0ys1ahp9z6rdr08f8wl7zw5r8x6w"; depends=[DBI tframe]; }; - TSdist = derive2 { name="TSdist"; version="3.2"; sha256="085s7d4h777iifvfchsss41lhr7vrm5i0lmpvri6yaw3lsab4r90"; depends=[cluster dtw KernSmooth locpol longitudinalData pdc proxy TSclust xts zoo]; }; + TSdist = derive2 { name="TSdist"; version="3.3"; sha256="0n5y0816nyhn21ggyjhwlm8a21rzwynf27nh1vamkwzhqms11msm"; depends=[cluster dtw KernSmooth locpol longitudinalData pdc proxy TSclust xts zoo]; }; + TSeriesMMA = derive2 { name="TSeriesMMA"; version="0.1.1"; sha256="0dkrz3m5lh872c0q9nw4h0p6g4j1j9fn92hz8xlifpsbsyzpz63b"; depends=[]; }; TSfame = derive2 { name="TSfame"; version="2015.4-1"; sha256="197v123mkxr7qlksnb5iadms5zbc8xqbpgr2cspb8x1krz6phssz"; depends=[DBI fame tframe tframePlus tis TSdbi]; }; - TSmisc = derive2 { name="TSmisc"; version="2015.1-3"; sha256="1hv1q9p7vp7pxx9s4s9w3vkif1w1xr4y656x3zaf48ijxf6c6a90"; depends=[DBI gdata its quantmod tframe tframePlus TSdbi tseries xts zoo]; }; + TSmisc = derive2 { name="TSmisc"; version="2016.8-1"; sha256="0xvn6qlvvdc65l356r8b5ppddjd35k9fc4b5w5wn3j5wzxfllbk1"; depends=[DBI gdata quantmod tframe tframePlus TSdbi tseries zoo]; }; TSodbc = derive2 { name="TSodbc"; version="2015.4-1"; sha256="0m6r97gs483jg6jlmfkbzxg3jvf6q140kvpidjccj224zb1sqlcq"; depends=[DBI RODBC tframe tframePlus TSdbi TSsql]; }; - TSsdmx = derive2 { name="TSsdmx"; version="2015.12-1"; sha256="0vl2p1n6jmq4q17fdni1w5vrqyyf71b3g06nzgj03sbxiia20cz2"; depends=[DBI rJava RJSDMX tframe tframePlus TSdbi]; }; + TSsdmx = derive2 { name="TSsdmx"; version="2016.8-1"; sha256="06h1iwgshiq4bvly5l1nrddrh2knc82z2aqxh8ls9ipbs7qjsvaf"; depends=[DBI rJava RJSDMX tframe tframePlus TSdbi]; }; TSsql = derive2 { name="TSsql"; version="2015.1-2"; sha256="1hpi2cssnkzqgnaj91wrvb94fs8zpfg8hi4m1zwswzyl3az0l9sc"; depends=[DBI tframe tframePlus TSdbi zoo]; }; - TTAinterfaceTrendAnalysis = derive2 { name="TTAinterfaceTrendAnalysis"; version="1.5.2"; sha256="00lzzarnpvb5dl4wzch1ll42wzcd2hc3xdi6fkgyiznx0nljapmg"; depends=[e1071 lubridate multcomp mvtnorm nlme pastecs relimp reshape tcltk2 wq]; }; + TTAinterfaceTrendAnalysis = derive2 { name="TTAinterfaceTrendAnalysis"; version="1.5.3"; sha256="0a1v0lsfcn32w5rwcjwmvh0rghamwr5a76rx3npa6kv0dymnvhxf"; depends=[e1071 lubridate multcomp mvtnorm nlme pastecs relimp reshape tcltk2 zoo]; }; + TTCA = derive2 { name="TTCA"; version="0.1.1"; sha256="16slr4c2nwbchsg6fk5prq22p2v4cjxzk93wd3xggav2lzrf8a5h"; depends=[MASS Matrix quantreg RISmed tcltk2 VennDiagram]; }; TTR = derive2 { name="TTR"; version="0.23-1"; sha256="1bmj0ngd3i3a9l2zsanifq3irz3rhsyd2rvvlhyndsgadkq9i5v9"; depends=[xts zoo]; }; TTS = derive2 { name="TTS"; version="1.0"; sha256="0dhxj474dqjxqg0fc2dcx8p5hrjn9xfkn0rjn2vz3js92fa9ik9h"; depends=[mgcv sfsmisc]; }; TTmoment = derive2 { name="TTmoment"; version="1.0"; sha256="0a4rdb4fk1mqnvvz0r15kni0g5vcj4xkkcwwv7c2gxc94xh5i5ih"; depends=[mvtnorm]; }; - TUWmodel = derive2 { name="TUWmodel"; version="0.1-6"; sha256="1i986ra0hdhr3nvh9izg6ym69sg2qp4x7b9kx4x86qgi8w43slvh"; depends=[]; }; + TUWmodel = derive2 { name="TUWmodel"; version="0.1-8"; sha256="0c00jd2bq4i5fd55hj7l2grkpn990p0kmhbsh95b2zrzhbwgcjp6"; depends=[]; }; Table1Heatmap = derive2 { name="Table1Heatmap"; version="1.1"; sha256="1nrabjivfsdhaqmlq365pskkrp99jqsxn8vy03mdnqn5h5zv7wvx"; depends=[colorRamps]; }; TableMonster = derive2 { name="TableMonster"; version="1.2"; sha256="1cl70d0svzx8nsg6kw5dv50s9d6wxqkyg39d2d4vissbpilq6arn"; depends=[xtable]; }; TableToLongForm = derive2 { name="TableToLongForm"; version="1.3.1"; sha256="135q0bgsm2yndrg3vpwmihbqlyf3qkm97i0jvcw6bf06p6b2fk41"; depends=[]; }; + TanB = derive2 { name="TanB"; version="0.1"; sha256="05y9j1a5nzqfpsw48gix5c4ds1cm80liad9wnwmddhbx4fda6p32"; depends=[fdrtool pracma]; }; TaoTeProgramming = derive2 { name="TaoTeProgramming"; version="1.0"; sha256="1b36s5mpm5vbhzcwmvm8g5pl7vpn6rsl5cnglfy8kgm1q9nnr7ff"; depends=[]; }; TapeR = derive2 { name="TapeR"; version="0.3.3"; sha256="0q5j7pn05z7hinwl5ypnrgh9ibsw6hvdfszjbnvavzab3bx8l6nn"; depends=[nlme pracma]; }; - Tariff = derive2 { name="Tariff"; version="1.0.1"; sha256="1jjg6qp6n9788w1snl7jsxdg168bbhskdp5wpqqbvcm651rb6d05"; depends=[]; }; + Tariff = derive2 { name="Tariff"; version="1.0.2"; sha256="0x139hhjjc1iyx9m3h5vdjh57q5kbc6x1mzjysz0ibnqpvhanjb2"; depends=[]; }; TauP_R = derive2 { name="TauP.R"; version="1.1"; sha256="10sjvcv70fjrsl5nnk9gm4sy7nhwm6aaq57gr37cb10v079ykmk1"; depends=[]; }; TauStar = derive2 { name="TauStar"; version="1.1.0"; sha256="1z5n1wfzc9c6zlxbr1vszp492vlq105p28n8jf5gkzsjraznk9zv"; depends=[Rcpp RcppArmadillo]; }; Taxonstand = derive2 { name="Taxonstand"; version="1.8"; sha256="1lxnfzg6r0ak1c1xrgakcbqnqpg1vqni5xh6hk89xxbdl8zgaa91"; depends=[]; }; TcGSA = derive2 { name="TcGSA"; version="0.10.1"; sha256="05cghnxn5r0ldr8cw371bz0iqx2b73b2qa77xj78xj7a950yvxhw"; depends=[cluster ggplot2 gplots GSA gtools lme4 multtest reshape2 stringr]; }; + Tcomp = derive2 { name="Tcomp"; version="1.0.0"; sha256="0ddswvww9yk31gh8qb9nh0glf9w2mp3ny7zps79kdcnvbkrpcbfs"; depends=[forecast Mcomp]; }; + TeachBayes = derive2 { name="TeachBayes"; version="0.1.0"; sha256="0izxdgjzjclnfg01v1inkm4mb4h56nn9y0ilc54m4rrayicvs071"; depends=[dplyr ggplot2 gridExtra LearnBayes shiny]; }; TeachNet = derive2 { name="TeachNet"; version="0.7"; sha256="1p39bsf846r7zwz4lrrv2bpyx9yrkqzrnacajwrz3jjqj6qpp6cn"; depends=[]; }; TeachingDemos = derive2 { name="TeachingDemos"; version="2.10"; sha256="016pivvy8gzz8f3clnr5dg488rb1lf0l5s00c3v34gm1dgiw5x1f"; depends=[]; }; TeachingSampling = derive2 { name="TeachingSampling"; version="3.2.2"; sha256="07c1wx7hl246kvj9ah55kdjpag8a9zbzh3jy0680w5nnv8vzsxxs"; depends=[]; }; + TestDataImputation = derive2 { name="TestDataImputation"; version="1.0"; sha256="07k4sgjda1gwdlx5rap5fhs5rww2ahzyf0fq98dsm99gvjajnmwn"; depends=[Amelia mice]; }; + TestFunctions = derive2 { name="TestFunctions"; version="0.1.0"; sha256="0df69n004svbb8q0z57cfc59i7l8rxpq0c7krcn8mb03hp79fpwd"; depends=[]; }; TestScorer = derive2 { name="TestScorer"; version="1.7.2"; sha256="006c3g3gx55mfr93srldwvgz5vm6nkr3f57yi4qg6krn0d32865f"; depends=[]; }; TestSurvRec = derive2 { name="TestSurvRec"; version="1.2.1"; sha256="05f5gc8hvz09hx015jzis6ikki9c1brdq7l7a9bxm9bqbcc9f2f9"; depends=[boot survrec]; }; TestingSimilarity = derive2 { name="TestingSimilarity"; version="1.0"; sha256="1fagy9168cz09p460pa0qyn8m79zg4i2b9j5vg8gm1ssqi2znsl9"; depends=[alabama DoseFinding lattice]; }; - TextoMineR = derive2 { name="TextoMineR"; version="1.1"; sha256="0pdf3zd1glbwqm1lwvv6mcn1pd9phrg5vdwxr2lhh22xsmggswjp"; depends=[FactoMineR gdata MASS stringr tm]; }; - Thermimage = derive2 { name="Thermimage"; version="1.0.1"; sha256="16wpmwqfqjghhp4g5wpmgzf0ii2aa0gawcq74rfn4frfizzdy0ad"; depends=[]; }; + Thermimage = derive2 { name="Thermimage"; version="2.2.3"; sha256="16pwykp33bwmca7dlcr4ia3sakfdazxxk501v4rcr735767fsvyh"; depends=[png tiff]; }; Thinknum = derive2 { name="Thinknum"; version="1.3.0"; sha256="0j48vgr4wsc2chm95aprq0xm0dk720xk5zmiijxasg92sfp0va6n"; depends=[RCurl RJSONIO]; }; - ThreeArmedTrials = derive2 { name="ThreeArmedTrials"; version="0.1-0"; sha256="1pafm8k90yv0hrk5a9adfv37087l2in0psslhkxha6mkmdh6a5f6"; depends=[MASS]; }; + ThreeArmedTrials = derive2 { name="ThreeArmedTrials"; version="1.0-0"; sha256="075cn99k06lgdd0cwl1i9242fcxwmd5malcyks0mmwjf9kzw00z2"; depends=[MASS numDeriv]; }; ThreeGroups = derive2 { name="ThreeGroups"; version="0.21"; sha256="0hipxa45v9ysb2qbk33kjycnvqar7bff1ajxd6fzhpc3jc9hflw4"; depends=[]; }; ThreeWay = derive2 { name="ThreeWay"; version="1.1.3"; sha256="17yl8zq029wiy3c0f4ssljx85dnm9n862wj2d24w7p0lxlvarmz6"; depends=[]; }; ThresholdROC = derive2 { name="ThresholdROC"; version="2.3"; sha256="08bmjsbwndb5i902plsy1wa5c1i5f96r3s6fdy0a16w9n6rvll1k"; depends=[MASS numDeriv pROC]; }; @@ -2603,29 +3191,38 @@ in with self; { TideCurves = derive2 { name="TideCurves"; version="0.0.1"; sha256="0xpb5xf7ipfnfrrc7j5gsvkn6njqz3ral9nim5gqqfgbnhxkvk1b"; depends=[chron data_table fields]; }; TideHarmonics = derive2 { name="TideHarmonics"; version="0.1-0"; sha256="0inqwa2y4pqs1g9d5m5y6w9j1kgc9qil6gmcilhkjrk886whf622"; depends=[]; }; TideTables = derive2 { name="TideTables"; version="0.0.1"; sha256="08c1fbwxc2kc3vicjdw8qg452y8jrsgyi6b4qbnpb8j6nj91qcx3"; depends=[chron data_table]; }; - Tides = derive2 { name="Tides"; version="1.1"; sha256="0w2xjnw2zv4s49kvzbnfvy30mfkn8hqdz6p155xm1kfqwvyb28qq"; depends=[]; }; + Tides = derive2 { name="Tides"; version="1.2"; sha256="1bd5x5wx6dd7498dc8jl0hsflxvlya2b6rkwg39dpsxsigb4qc5n"; depends=[]; }; + TileManager = derive2 { name="TileManager"; version="0.1.11"; sha256="11jlg99zfi00ss2a9qzmzxxdphdl3zy3pac0c7b0j2v2f529xwsw"; depends=[APfun raster rgeos sp]; }; TilePlot = derive2 { name="TilePlot"; version="1.3.1"; sha256="0yfzjyzc743rv5piw9mb7y0rr558hkxszgz49lya2w3i1mqvxbzy"; depends=[]; }; TimeMachine = derive2 { name="TimeMachine"; version="1.2"; sha256="1dz0j777wmd8mpkm2ryiahpcw6w88w429zjcw6m67pi20r1992cb"; depends=[]; }; TimeProjection = derive2 { name="TimeProjection"; version="0.2.0"; sha256="04yr4cg2khkw9n3y3qk0ni1327k4pxm09zz2xg8mpjdvgi4p9yi3"; depends=[lubridate Matrix timeDate]; }; - TimeWarp = derive2 { name="TimeWarp"; version="1.0.12"; sha256="1qadaf8n8ym5nv1z328hd5wiw78f014imgd2ryvi70sh4dmzb16l"; depends=[]; }; + TimeWarp = derive2 { name="TimeWarp"; version="1.0.15"; sha256="1v6f6d1h9dc8npdy0ph5hhc4jjkzh8kac48lz4ahgngi9n0xwql9"; depends=[]; }; Tinflex = derive2 { name="Tinflex"; version="1.1"; sha256="1wnb893x4gj1h3fpyblks07dln5ilpllpmmwp7wpqbvj7hzrj661"; depends=[]; }; - TipDatingBeast = derive2 { name="TipDatingBeast"; version="0.1-6"; sha256="0yfm99j2b3k9har87qb675jxgfp5vq3aizqvxc1njnfyh5yjg89k"; depends=[mclust]; }; - Tmisc = derive2 { name="Tmisc"; version="0.1.5"; sha256="17z3l8q86rd683ljiamc56a94ivbl6n4dyzxc3ppmnfy5m6ybv0p"; depends=[dplyr]; }; + TipDatingBeast = derive2 { name="TipDatingBeast"; version="1.0-5"; sha256="0n0kw90nzyh8ik09kp1lq301rhdink6dqzd6xw9qkl10z8rzq7v1"; depends=[DescTools mclust TeachingDemos]; }; + TippingPoint = derive2 { name="TippingPoint"; version="1.1.0"; sha256="1f5bfag892yk47r1pw2rlvqz9qnkaz8radprpxh0q0knviw3f9fp"; depends=[bayesSurv ggplot2 RColorBrewer reshape2]; }; + Tlasso = derive2 { name="Tlasso"; version="1.0.1"; sha256="0flx4l7q3qndp77349ayfrszyim7mvs7yfvv3j9a1mhf3gdn9j14"; depends=[expm huge igraph rTensor]; }; + Tmisc = derive2 { name="Tmisc"; version="0.1.12"; sha256="1awmc2gdas90hz66wiy4n7yqz3p0bl65adx0l6q7zx88w8nxn6lw"; depends=[audio dplyr]; }; + Tnseq = derive2 { name="Tnseq"; version="0.1.1"; sha256="00pd51mmy2w5cpxrx2zh5jmpcirj8ynma3whnv1nmdy4lf10mn50"; depends=[Biobase Ckmeans_1d_dp DESeq edgeR limma]; }; TopKLists = derive2 { name="TopKLists"; version="1.0.6"; sha256="1hmm9g68scq8sqdb9axqn51p00mx6p6lw0fdgjljfi2q72xcqhq3"; depends=[gplots Hmisc]; }; - TraMineR = derive2 { name="TraMineR"; version="1.8-11.1"; sha256="037l0857vv51n3046vrcsxrc24hljwr7ya1q3d6cbw9la1qv5f0d"; depends=[boot Hmisc RColorBrewer]; }; - TraMineRextras = derive2 { name="TraMineRextras"; version="0.2.4"; sha256="144s25ivq27f81dgh9x9h1fph1hdk86w9yac1hy6358kc8jnmi3q"; depends=[cluster combinat RColorBrewer survival TraMineR]; }; + TotalCopheneticIndex = derive2 { name="TotalCopheneticIndex"; version="0.1"; sha256="1477zp8jzq1p22q8484vkrdx5nxwq4i44mxg4zhj9fixiw4shpx9"; depends=[ape]; }; + TraMineR = derive2 { name="TraMineR"; version="1.8-13"; sha256="058fj2jkr9hzpigmawzfv20c7dzdf70lwwxng46x0b1r34pdgrfr"; depends=[boot Hmisc RColorBrewer]; }; + TraMineRextras = derive2 { name="TraMineRextras"; version="0.2.5"; sha256="198yvnvw8yq321p2cdan1s47dy9vy4yxhqsnlp391lzykvan1qpc"; depends=[cluster combinat RColorBrewer survival TraMineR]; }; TrackReconstruction = derive2 { name="TrackReconstruction"; version="1.1"; sha256="1f2l3nshb6qrhyczw5rxqqzmsjxf0rvv3y78j8d9lv1nnd9kxzq5"; depends=[fields RColorBrewer]; }; + Trading = derive2 { name="Trading"; version="1.1"; sha256="1mzqck9n14xp16vflx1sx8lry0wjmx37hqv76ldj21xnk5zbrgil"; depends=[]; }; Traitspace = derive2 { name="Traitspace"; version="1.1"; sha256="1wlrpnzb39vgkqy0ynbwlgrkkqgklrk6pw7f8p7p2i132qk2c291"; depends=[mclust permute]; }; TransModel = derive2 { name="TransModel"; version="1.0"; sha256="1cxvfmf304x8riwcnx6gp5fb5gkqa552zby2n6yxc0ic0m0w77kb"; depends=[survival]; }; TransP = derive2 { name="TransP"; version="0.1"; sha256="0p6pfcp8qjdah0lfhx0a396nxjzp3ckpda9hl3snpppx79iyww55"; depends=[]; }; - TransferEntropy = derive2 { name="TransferEntropy"; version="1.2"; sha256="11hwfbf53y88cpm693742hfzzpfwldwxag5860bv0h5r538aqini"; depends=[BH Rcpp]; }; - TreatmentSelection = derive2 { name="TreatmentSelection"; version="1.2.0"; sha256="10b9saa15mcsmzsxmg79hs8kmdn6by1b1j889105qii62cd0pzdl"; depends=[ggplot2]; }; + TransferEntropy = derive2 { name="TransferEntropy"; version="1.4"; sha256="0620axdj6qyskf7xszrs8j5d2l73ns4bgbdg03fvr8i7jmq70zb8"; depends=[BH Rcpp]; }; + TreatmentSelection = derive2 { name="TreatmentSelection"; version="2.0.3"; sha256="00z85vmpy7k4vi2jj9yspybc9hkwqqfnvl1x9jqayyb8xw8wk0f6"; depends=[binom ggplot2 survival]; }; + TreeBUGS = derive2 { name="TreeBUGS"; version="1.0.1"; sha256="19nszlw5xgvd4r8rn6a4ayhx2nxxrmqw1ji4pbvn01y15cfyilfq"; depends=[coda hypergeo MASS Rcpp RcppArmadillo rjags runjags]; }; TreePar = derive2 { name="TreePar"; version="3.3"; sha256="1sm518b1b4b1p0n5979qzvi2nacxpp3znbg9n75pf2a8z8wy6p4l"; depends=[ape deSolve Matrix subplex TreeSim]; }; TreeSim = derive2 { name="TreeSim"; version="2.2"; sha256="1c61afb49kjlfb6iy69vk2bgl20g8bhsbwnai2d2shmv1nimi5jf"; depends=[ape geiger laser]; }; TreeSimGM = derive2 { name="TreeSimGM"; version="1.2"; sha256="0y6hadwx3apw11jy5d4al3dav3his8b4xvkv7s5d5rd92l7yrw0r"; depends=[TreeSim]; }; + TrendInTrend = derive2 { name="TrendInTrend"; version="1.0.1"; sha256="1fph4sz3y7drni0mjivz82jvmfa8hp468vmqk00k51w4nkg3hyif"; depends=[]; }; TriMatch = derive2 { name="TriMatch"; version="0.9.7"; sha256="06idgh9bwwbwa16hlc2kgm06n9shzm0825f7k65zpz3isq23dp7q"; depends=[ez ggplot2 gridExtra PSAgraphics psych reshape2 scales]; }; TrialSize = derive2 { name="TrialSize"; version="1.3"; sha256="1hikhw2l7d3c7cg4p7zzrgdwhy9g4rv06znpw5mc6kwinyakp75q"; depends=[]; }; - TripleR = derive2 { name="TripleR"; version="1.4.1"; sha256="028xvy3l72n1jhhfzv1fx1a51ya9bx008icz81ixjdwghzqr0wmi"; depends=[ggplot2 plyr reshape2]; }; + TripleR = derive2 { name="TripleR"; version="1.5.3"; sha256="13s1vlmr4sqa2sq2fbcld86bh3g73yb204aawbks11rjblwzvb0h"; depends=[ggplot2 plyr reshape2]; }; + TropFishR = derive2 { name="TropFishR"; version="1.0.2"; sha256="0rkgjx3nnjyy46fbn4szvbsiz8awf6238h7br9kjwc06aaj935dp"; depends=[beepr doParallel GA GenSA MASS msm propagate reshape2]; }; TruncatedNormal = derive2 { name="TruncatedNormal"; version="1.0"; sha256="1qj18xcq58xah1niwxgqqzscl7dfgxh2s8fdbzk1vigwwm5xfvij"; depends=[randtoolbox]; }; Tsphere = derive2 { name="Tsphere"; version="1.0"; sha256="0xgxw2hfj40k5s0b54dcmz7savl8wy4midmmgc7lq4pyb8vd58xx"; depends=[glasso rms]; }; TukeyC = derive2 { name="TukeyC"; version="1.1-5"; sha256="08s9scsd2l6wavc7qqlffjbf89vkd6xpb4iawvbqf7jh8jiyvw17"; depends=[]; }; @@ -2635,77 +3232,94 @@ in with self; { TwoPhaseInd = derive2 { name="TwoPhaseInd"; version="1.1.1"; sha256="0xsqiq4x7vmhif9j8zi1smbchwm4fsbgb10i4vxi0biijybizk9z"; depends=[survival]; }; TwoStepCLogit = derive2 { name="TwoStepCLogit"; version="1.2.5"; sha256="050y7na91izg36gkwd8yn8rx3r39dk6qlvhd3137f3jnk4v00bck"; depends=[survival]; }; UBCRM = derive2 { name="UBCRM"; version="1.0.1"; sha256="1h9f8wlxdgb67qqqnfhd9gfs4l2cq84vajhcb0psva0gwdd1yf6i"; depends=[]; }; - UNF = derive2 { name="UNF"; version="2.0.1"; sha256="1gnzj7lxfp0x5f2ws9aclzaq75gbmsqhjqi02llmihf05gq0kp23"; depends=[base64enc digest]; }; + UBL = derive2 { name="UBL"; version="0.0.5"; sha256="13dvfpkyn9fc2lwlxzf5s47zjhgjnm7s9825w2brgq4l6x5afz9q"; depends=[]; }; + UCR_ColumnNames = derive2 { name="UCR.ColumnNames"; version="0.1.0"; sha256="1nwwq93f60r9aik51l7mzckg81f81nz5kgzynyzp5sm4y2wmpzwn"; depends=[]; }; + UNCLES = derive2 { name="UNCLES"; version="2.0"; sha256="0c61sm09dh0yfrjrjjnizg7qrf8xgc1zdldwhjh64kq8k8g5wa69"; depends=[class kohonen pdist]; }; + UNF = derive2 { name="UNF"; version="2.0.5"; sha256="1lag4aby81nnd7w8f68zswgm4afp24xhj72k0v7cka9hyxz0p129"; depends=[base64enc digest]; }; UPMASK = derive2 { name="UPMASK"; version="1.0"; sha256="19krsqkz2g5b6svqp29s6i92bhlk7liv8lf7d03za848w7y2jkhq"; depends=[DBI MASS RSQLite]; }; USAboundaries = derive2 { name="USAboundaries"; version="0.2.0"; sha256="1if3wf22h395iqcn1n5rfnacwhxd3mpmbvygdwbs2amk55r18vg4"; depends=[sp]; }; + USGSstates2k = derive2 { name="USGSstates2k"; version="1.0.1"; sha256="11yk0pkss23j6fmmxnjkjm9p24ln343y4hijigbrbvcnb21wj2py"; depends=[sp]; }; UScancer = derive2 { name="UScancer"; version="0.1-2"; sha256="0p1kxw1phqq598ljk3njznc9kmgscc8gmwdrvx1scba9rr6n61kl"; depends=[rgdal]; }; UScensus2000cdp = derive2 { name="UScensus2000cdp"; version="0.03"; sha256="143hqnzdla3p31n422ddzaaa34wc6xnnhil4y53m4qydyg407700"; depends=[foreign maptools sp]; }; UScensus2000tract = derive2 { name="UScensus2000tract"; version="0.03"; sha256="11ppw75k8zghj7xphx5xyl3azsdsyd142avp0la2g941w6f8l2n1"; depends=[foreign maptools sp]; }; UScensus2010 = derive2 { name="UScensus2010"; version="0.11"; sha256="1q06spkh8f4ijvfg557rl3176ki4i8a1y39cyqm3v7mnzwckyj3l"; depends=[foreign maptools sp]; }; + UStatBookABSC = derive2 { name="UStatBookABSC"; version="1.0.0"; sha256="16r6clhfaalfsg5hmvzm8a128zygxax5hyc0vr1q9bsw9hj7cs0c"; depends=[]; }; UWHAM = derive2 { name="UWHAM"; version="1.0"; sha256="1qaj8anaxqnx4nc6vvzda9hhhzqk9qp8q7bxm26qgia4hgascnrv"; depends=[trust]; }; Ultimixt = derive2 { name="Ultimixt"; version="2.0"; sha256="18xg1z41nccwzn9mdzpap41ffp4cmfww8bwk10m1v96acf9kq2i5"; depends=[coda gtools]; }; UncerIn2 = derive2 { name="UncerIn2"; version="2.0"; sha256="08cg7armz9xwwn1222aws98cwrvmw0s73pxpnszmrmrli1qs92k1"; depends=[automap fields geoR gstat RandomFields Rcpp sp]; }; - Unicode = derive2 { name="Unicode"; version="8.0.0-1"; sha256="0mhr0hirllcr55y92hywsx2xw0l4jyaq3dahlcpkypa3c19nx631"; depends=[]; }; - UpSetR = derive2 { name="UpSetR"; version="1.1.1"; sha256="1ygrjim2r2ff98dmksrdzlhgyh64xm6ryl79g25v9mxa2pygpc3k"; depends=[ggplot2 gridExtra plyr]; }; + UncertainInterval = derive2 { name="UncertainInterval"; version="0.3.0"; sha256="09x52g691qqsphy2sppm3852gak0ammsan4x306vd16yz9z0zlb2"; depends=[nloptr reshape2 rootSolve]; }; + Unicode = derive2 { name="Unicode"; version="9.0.0-1"; sha256="1daf4wlglqzha0p6cbmrkwn4ppkzfvpvg1aa64gphr4dg2g5jsdf"; depends=[]; }; + UpSetR = derive2 { name="UpSetR"; version="1.3.2"; sha256="0b8nms8b3n6m2ya1ms68crya41k0kq149kxg5999fw5lykx35bjr"; depends=[ggplot2 gridExtra plyr scales]; }; UsingR = derive2 { name="UsingR"; version="2.0-5"; sha256="1w1swcb5srb2b76agbh3mipz8b3vbhpnhxfhg7k546y38j3crafq"; depends=[HistData Hmisc MASS]; }; - V8 = derive2 { name="V8"; version="1.0.0"; sha256="1d9smhmcmmc1mlkj8zx9nix7isd81589r3qdw4s2hqkjwvzdkcca"; depends=[curl jsonlite Rcpp]; }; + V8 = derive2 { name="V8"; version="1.2"; sha256="1sdjmg3d8m0jmfs7zmz7cpw4ffar76nia2dzymnb373alm1gwlh6"; depends=[curl jsonlite Rcpp]; }; VAR_etp = derive2 { name="VAR.etp"; version="0.7"; sha256="0py5my3ilhcmz44m15hh0d219l9cz7rda4a9gbmf8wh9cgvvj1s3"; depends=[]; }; - VARSEDIG = derive2 { name="VARSEDIG"; version="1.1"; sha256="0fhn0r548k6xkm61bvl1bz81x284qycmc4ccql1g9770q68695va"; depends=[ade4 adehabitatHS car IDPmisc kulife MASS]; }; + VARSEDIG = derive2 { name="VARSEDIG"; version="1.3"; sha256="1qvc9lyfdc0irivi4y27hc5yn5lk05nbgqx7zcj602s0r7i7nvln"; depends=[]; }; VARsignR = derive2 { name="VARsignR"; version="0.1.3"; sha256="09mnf9hvsi4wx1c81yq97mzggwk6s7nka7awrws63icjybqjmra9"; depends=[HI minqa mvnfast]; }; VBLPCM = derive2 { name="VBLPCM"; version="2.4.4"; sha256="09b80313w2dljl009xzcfhdcl6flc8nqzw9pzgfbciwi61666ppb"; depends=[ergm mclust network sna]; }; VBmix = derive2 { name="VBmix"; version="0.3.1"; sha256="0gicp470w6xy2z4r54ywjd4c9cck2yhhw7ismdp4jm9zsvc7nv1y"; depends=[lattice mnormt pixmap]; }; - VCA = derive2 { name="VCA"; version="1.2.1"; sha256="0jwqwrjl7wl4358yrz5ab9a5hp9vd9apsxi5is6rlkswlam33hls"; depends=[Matrix numDeriv]; }; + VCA = derive2 { name="VCA"; version="1.3.2"; sha256="10d8vw6ihnsmqgvbfd6dwdilk9mz9wvmlxi39fpq219mqvqyzkah"; depends=[lme4 Matrix numDeriv]; }; VDA = derive2 { name="VDA"; version="1.3"; sha256="063mpwbyykx4f46wzfvrgnlq73ar7i06gxr4mjzbhqcfrsybi72b"; depends=[rgl]; }; - VGAM = derive2 { name="VGAM"; version="1.0-1"; sha256="1sh5gb4glnl84iiz33dnwmb37y1wpafjja1s70zy5kkg8178crn0"; depends=[]; }; - VGAMdata = derive2 { name="VGAMdata"; version="1.0-0"; sha256="1ywqmfn469hpw9h07raxxrw2wc736i3wbxq2vq31qll4shqnc4q3"; depends=[]; }; + VDAP = derive2 { name="VDAP"; version="2.0.0"; sha256="134x4aisaim72xkyzb1vb8vhl2m4i12yzh6cj858a1ag7b0ing3n"; depends=[drc ggplot2 reshape2 stringr]; }; + VGAM = derive2 { name="VGAM"; version="1.0-3"; sha256="0wr6szcpj8r4a1rlzgd6iym7khin69fmvxcf37iyvs8mms86dfr3"; depends=[]; }; + VGAMdata = derive2 { name="VGAMdata"; version="1.0-3"; sha256="1jicadjaqmys1bbgkp64hmm8wwmi6f734il00v8qjz3jl9b02pkn"; depends=[]; }; VHDClassification = derive2 { name="VHDClassification"; version="0.3"; sha256="1ij4h3gzxb9mm9q743kc3sg2q609mnqz6mhlrbim1wcjji2b7bv4"; depends=[e1071 lattice]; }; VIF = derive2 { name="VIF"; version="1.0"; sha256="0yvg6ikrcs7mhg0pavhcywrfysv7ylvnhxpc5sam86dbp69flx9x"; depends=[]; }; - VIFCP = derive2 { name="VIFCP"; version="1.1"; sha256="1xy9bsiz4ixsf7znlcaswcyryj8wf6r778wl11b1c33ip3ibq28x"; depends=[]; }; + VIFCP = derive2 { name="VIFCP"; version="1.2"; sha256="0w41k25vss806m5vpwmmcfsmwaixmln0pliql3a6xlwsihha5i34"; depends=[]; }; VIGoR = derive2 { name="VIGoR"; version="1.0"; sha256="1c24s917aafqy46b3xlsw8v3afs11nd5bq83vlygpgnz1612jpga"; depends=[]; }; - VIM = derive2 { name="VIM"; version="4.4.1"; sha256="0kpf4rdcm69k742d8naphw10wdwicx3jfm159n2d1c3v6hfjmv0g"; depends=[car colorspace data_table e1071 MASS nnet Rcpp robustbase sp vcd]; }; - VIMGUI = derive2 { name="VIMGUI"; version="0.9.0"; sha256="195lakyik597sjkq6c5v3881p35111gzmj2r5f5nr53vi6bn4pzm"; depends=[Cairo foreign gWidgetsRGtk2 Hmisc RGtk2 survey tkrplot VIM]; }; + VIM = derive2 { name="VIM"; version="4.6.0"; sha256="1yl6bsdigwjfkdn5mbfrw10ip1xr7scw1mvykdwgzkyfnlb8z86w"; depends=[car colorspace data_table e1071 laeken MASS nnet Rcpp robustbase sp vcd]; }; + VIMGUI = derive2 { name="VIMGUI"; version="0.10.0"; sha256="14na9ss0vkcys979kdcciynwssqsvy2w566nydgzd3n7gcmx2agm"; depends=[Cairo foreign gWidgets gWidgetsRGtk2 Hmisc RGtk2 survey tkrplot VIM]; }; VLF = derive2 { name="VLF"; version="1.0"; sha256="1il8zhm80mc22zj16dpsy4s6s9arj21l9ik0vccyrpnlr8ws3d3l"; depends=[]; }; VLMC = derive2 { name="VLMC"; version="1.4-1"; sha256="0y91cl9pv1d5s8956grdx3y4xa5l1fabrh1wl5hn11fjgyz1dcij"; depends=[MASS]; }; VNM = derive2 { name="VNM"; version="4.1"; sha256="1vmdm4f7y69imsbxnd7q85q1ygcyl94pq5n7f33d0sd8rw51dmdj"; depends=[Rcpp]; }; VPdtw = derive2 { name="VPdtw"; version="2.1-11"; sha256="0qsw5mqv36k8mcvwj1ka41z5kc05yn79wv41ai8f5412sbngihlr"; depends=[]; }; + VRPM = derive2 { name="VRPM"; version="1.1"; sha256="19rr31w0yzy7w9k34ny2sjk9ijwgnkfzbdizdch77g9rnpzpw597"; depends=[fields ggplot2 Hmisc kernlab R2HTML ROCR shiny survival viridis]; }; VSE = derive2 { name="VSE"; version="0.99"; sha256="07m5080nw72b77238v2wwdh4dxsvv6y78d4j1329n90wyj2crxl4"; depends=[car GenomicRanges igraph IRanges]; }; - VSURF = derive2 { name="VSURF"; version="1.0.2"; sha256="1wrvgymwh2mgxrsciy62ib7lf9jyc5w9ga3s88cvcrvinagl21xs"; depends=[doParallel foreach randomForest rpart]; }; + VSURF = derive2 { name="VSURF"; version="1.0.3"; sha256="0fgy1qk1jkrnil4cirkp2lj21xjwbpgjgxqrsjs321s69rw2dy1j"; depends=[doParallel foreach randomForest rpart]; }; VTrack = derive2 { name="VTrack"; version="1.11"; sha256="1w8zp7l60mwzppg3gqq0zv5a065y0vdrp2v0x0yl4a8jq0zlvppx"; depends=[doParallel foreach plotKML sp spacetime]; }; + VWPre = derive2 { name="VWPre"; version="0.9.5"; sha256="1qxaq60zpb8hdpq3c17sm77jvm8r0yy88xvq1k8i52ggn8nn7gsc"; depends=[dplyr ggplot2 lazyeval mgcv shiny tidyr]; }; VaRES = derive2 { name="VaRES"; version="1.0"; sha256="0gw05jiqgirhz3c8skbb07y4h44r6vi68gnd5y7ql455v0c2raza"; depends=[]; }; VarSelLCM = derive2 { name="VarSelLCM"; version="1.2"; sha256="1pzcadzg1snv2nkdrbhgi6scrd70cawprncm8hs82gcl3r9dscic"; depends=[Rcpp RcppArmadillo]; }; VarSwapPrice = derive2 { name="VarSwapPrice"; version="1.0"; sha256="12q2wp2cqi9q47mzbb7sc250zkjqkhs9z0h93ik0h63dv339abgj"; depends=[]; }; - VarfromPDB = derive2 { name="VarfromPDB"; version="2.0.5"; sha256="1wni4ywwkqp1kd82prrzzxjw8ljacq5d7lb751gyg4jrpcsdclr5"; depends=[RCurl RISmed stringi stringr XML XML2R]; }; - VariABEL = derive2 { name="VariABEL"; version="0.9-2"; sha256="0vlr6zxl75i49p35jxrc5fwfrb55n91hqdan2ikcix3r2k4qs5k0"; depends=[]; }; + VarfromPDB = derive2 { name="VarfromPDB"; version="2.1.11"; sha256="1pxv6f7bz7g75hk3y7ndc9qcf49fzl82xc8f165w18wgkqk0v6a4"; depends=[RCurl RISmed stringi stringr XML XML2R]; }; + VariABEL = derive2 { name="VariABEL"; version="0.9-2.1"; sha256="00k08mvd09rpplakvid6qal1zdxaj1bxn4d2ivpnqihisf7nxqbs"; depends=[]; }; + VariableScreening = derive2 { name="VariableScreening"; version="0.1.1"; sha256="03l929qhgr1bd721488xx0il1hlswv3zdad518ki94ghq9c4nmg3"; depends=[expm gee MASS]; }; VarianceGamma = derive2 { name="VarianceGamma"; version="0.3-1"; sha256="0h424hdphbgi9i84bgzdwmsq05w61q8300x8f9y4szbxa5k2dnar"; depends=[DistributionUtils GeneralizedHyperbolic RUnit]; }; VdgRsm = derive2 { name="VdgRsm"; version="1.5"; sha256="13mbv3ih6p2915wdzq4zjx7m4k37w1xddkxx6dzk1jiak2br9slj"; depends=[AlgDesign permute]; }; Vdgraph = derive2 { name="Vdgraph"; version="2.2-2"; sha256="1q8l711zbrrj4h1wmpv93nbvlg8xi6kjv22zpidkck8ncpyyla80"; depends=[]; }; - VecStatGraphs2D = derive2 { name="VecStatGraphs2D"; version="1.7"; sha256="08f9ixpiq8s5h8h608wrs9l16xk3c1xcrvwgvm5wqm6xfkj9gpfd"; depends=[MASS]; }; + VecStatGraphs2D = derive2 { name="VecStatGraphs2D"; version="1.8"; sha256="0jjxdwcj0n6kk5l7hw4zibpikqxhkkik5819qv75z4gqdgg0fgch"; depends=[MASS]; }; VecStatGraphs3D = derive2 { name="VecStatGraphs3D"; version="1.6"; sha256="1pnpgnxdiis4kzwhh17k61aidyan5fp9rzqhvwf6gljb4csqsk54"; depends=[MASS misc3d rgl]; }; - VennDiagram = derive2 { name="VennDiagram"; version="1.6.16"; sha256="180w0bbfzms12w5s23rbndk413ly5bmdia5qnj0025hicfbh9wvx"; depends=[futile_logger]; }; + VennDiagram = derive2 { name="VennDiagram"; version="1.6.17"; sha256="14cahgxm5kq133j5wv6p7ivlmcmym5r39v4dpj69wnq6w9rjqki8"; depends=[futile_logger]; }; VertexSimilarity = derive2 { name="VertexSimilarity"; version="0.1"; sha256="0f638y272dbmz5747wxqy9pxasxk3a9f9wf31gf297qx7268ab1m"; depends=[igraph]; }; - ViSiElse = derive2 { name="ViSiElse"; version="1.0.1"; sha256="1fqk9dcf1fkk7lk7b3iicvxd67q04mmqdf3zggj3cgw6jimx7ba7"; depends=[chron colorspace Matrix stringr]; }; + VetResearchLMM = derive2 { name="VetResearchLMM"; version="0.1.0"; sha256="0k5mr9426v1b3kqnzrb1nizrsvjmm5qx6fybrnn0y1j2w7hk99jr"; depends=[ggplot2 lme4 lmerTest multcomp nlme]; }; + ViSiElse = derive2 { name="ViSiElse"; version="1.2.0"; sha256="0k5hhzyjws0haawx2r2c0rxjbjdfx821x0jmj88786q6x67x86n0"; depends=[chron colorspace Matrix stringr]; }; VideoComparison = derive2 { name="VideoComparison"; version="0.15"; sha256="0592fz0v4xvq1qy2hj4ph90v7zn1cnzr6a094mp9p1k61ki3fbg2"; depends=[pracma Rcpp RCurl RJSONIO zoo]; }; - VineCopula = derive2 { name="VineCopula"; version="1.6-1"; sha256="1yxsn6n5fd6n155jpk72wn09fw6x85m0kpdm4gbng8jdz5x4b49d"; depends=[ADGofTest copula igraph lattice MASS mvtnorm]; }; + VineCopula = derive2 { name="VineCopula"; version="2.1.1"; sha256="1cqfa7s3gqrbdhjy2v8yn44k6vlxpzi0bmlcpzf9kkzy36p3vz84"; depends=[ADGofTest copula doParallel foreach kdecopula lattice MASS mvtnorm network]; }; VisuClust = derive2 { name="VisuClust"; version="1.2"; sha256="0hnjmrz352950rzky88q4nwvkx7zp6x3lsm7kff5dl4w05iq4wsl"; depends=[aplpack]; }; - VizOR = derive2 { name="VizOR"; version="0.7-9"; sha256="1xw06y86nsrwpri6asrwh8kccjsqzzidgbpld6d6l7vrglp8m6sr"; depends=[lattice rms]; }; + VizOR = derive2 { name="VizOR"; version="0.8-5"; sha256="1v76m67xdlg06w3dmp27mh3mv3lfqy6bd1iq907dynp2g4qf4ww0"; depends=[lattice rms]; }; Voss = derive2 { name="Voss"; version="0.1-4"; sha256="056izh1j26vqjhjh01fr7nwiz1l6vwr5z4fll87w99nc5wc4a467"; depends=[fields]; }; VoxR = derive2 { name="VoxR"; version="0.5.1"; sha256="07lsp6lrkq0gv55m84dl9w7gz5246d9avypqnkz96n3rbbgd0w5z"; depends=[]; }; W2CWM2C = derive2 { name="W2CWM2C"; version="2.0"; sha256="139rbbhshiap3iq4s4n84sip3cwwjn2x7lm7kmzwj5glhl5dc6ga"; depends=[colorspace wavemulcor waveslim]; }; - W3CMarkupValidator = derive2 { name="W3CMarkupValidator"; version="0.1-5"; sha256="1d4qpz6a984jv3p0l1w4xdhfx5iz9njz3dxlp0llyfzqg1szbqzj"; depends=[curl xml2]; }; + W3CMarkupValidator = derive2 { name="W3CMarkupValidator"; version="0.1-6"; sha256="0nfay5nqss3zlw4nikj8h3zzlnjfxjch4pm3qky15qrcigrybrbl"; depends=[curl xml2]; }; WACS = derive2 { name="WACS"; version="1.0"; sha256="1x6vn7xhrnaggrxkvap6si8gz7b6z2zpjpbb9zgag4vyq3s7nxgy"; depends=[mclust mnormt mvtnorm tmvtnorm]; }; - WARN = derive2 { name="WARN"; version="1.2-0"; sha256="0iamg0jh11ydy04mp3vn6zjhr89454m78iz5mmyfywf0s5415san"; depends=[MASS]; }; + WARN = derive2 { name="WARN"; version="1.2-2"; sha256="1kp0p9ax6k4y990j95q70dhd1r37hjw3i583c2f6ds8gpddqdi3v"; depends=[MASS]; }; WCE = derive2 { name="WCE"; version="1.0"; sha256="1kb1z67ymnz8cgwxq6m5fpqgxmmrfiwh2q3x4rhanac2sinagyn4"; depends=[plyr survival]; }; WCQ = derive2 { name="WCQ"; version="0.2"; sha256="1yhkr2iazd7lh9r68xz1lh32z6r1sdnmqrjshcrm4rbwai0j3lkr"; depends=[]; }; WDI = derive2 { name="WDI"; version="2.4"; sha256="0ih6d9znq6b2prb4nvq5ypyjv1kpi1vylm3zvmkdjvx95z1qsinf"; depends=[RJSONIO]; }; + WEE = derive2 { name="WEE"; version="1.0"; sha256="0i3h67p72lr708mwdw3rbzr1lqqr8n2dxv7f0bwyqzxv41sx1iz3"; depends=[doParallel foreach quantreg]; }; WGCNA = derive2 { name="WGCNA"; version="1.51"; sha256="0hzvnhw76vwg8bl8x368f0c5szpwb8323bmrb3bir93i5bmfjsxx"; depends=[AnnotationDbi doParallel dynamicTreeCut fastcluster foreach GO_db Hmisc impute matrixStats preprocessCore survival]; }; - WHO = derive2 { name="WHO"; version="0.1"; sha256="0szyzf8048czq8yh2wbck80qmnsgrzg7ik5zp7l71rzgjpcyf8hm"; depends=[dplyr httr]; }; + WHO = derive2 { name="WHO"; version="0.2"; sha256="0rpk7ddpkjcqs0m7cgxs55k178js0d70ccfximp2vqrsw0igkmk9"; depends=[dplyr httr]; }; WMCapacity = derive2 { name="WMCapacity"; version="0.9.6.7"; sha256="167wx759xi7rv74n6sdsdkjnfpxdsiybk4ik70psdgfwdqqcga1y"; depends=[cairoDevice coda gtools gWidgets gWidgetsRGtk2 RGtk2 XML]; }; WMDB = derive2 { name="WMDB"; version="1.0"; sha256="10wdjy3g2qg975yf1dhy09w9b8rs3w6iszhbzqx9igfqvi8isrr1"; depends=[]; }; - WRS2 = derive2 { name="WRS2"; version="0.4-0"; sha256="11yfq8jkr2f28zmshkvjv0ajslh0137mprn9clgala8y4xrpqv94"; depends=[MASS plyr reshape]; }; + WPC = derive2 { name="WPC"; version="1.0"; sha256="0li502hwa4n945yfnilslyvl12ls66kazbfmxb4kkjbaf500mjp9"; depends=[msm survival]; }; + WRS2 = derive2 { name="WRS2"; version="0.9-1"; sha256="0w7qnqf289p5jnfr9l83bcplxg1rvbhc90iz7wwnphx7246nkdvv"; depends=[MASS mc2d plyr reshape]; }; + WRTDStidal = derive2 { name="WRTDStidal"; version="1.0.1"; sha256="14xi1wksyj07nch678dd4rbaa3q1in4nbsarv5bijl2b11dhfi7j"; depends=[caret dplyr fields foreach forecast ggplot2 gridExtra lubridate quantreg RColorBrewer survival tidyr]; }; + WVPlots = derive2 { name="WVPlots"; version="0.2.2"; sha256="11zbmsq2nbvb9m7wkybwcmk1lj6n8w1v355qwsp41j9pd7r3ccw8"; depends=[ggplot2 gridExtra mgcv replyr reshape2 sigr wrapr]; }; WWGbook = derive2 { name="WWGbook"; version="1.0.1"; sha256="0q8lnd1fp4rmz715x0lf61py3xw8wg55yq3gvswaqwy68dlqrzjc"; depends=[]; }; + WWR = derive2 { name="WWR"; version="1.0.0"; sha256="0nsgcasdgzxxlnpicmq9n9200gg2c2si3gfpwaxdy4ccwasgjq6p"; depends=[]; }; WaterML = derive2 { name="WaterML"; version="1.7.1"; sha256="0aqcanq2l3m9w1kglmkbqshs80wx9inmjp0c1i2j901g4k35ss5j"; depends=[httr RJSONIO XML]; }; Watersheds = derive2 { name="Watersheds"; version="1.1"; sha256="1gn52nl0rr29pqq94gjasc4fi1kjxlrpjdkgm2x56j5jbd162drk"; depends=[lattice maptools rgeos sp splancs]; }; Wats = derive2 { name="Wats"; version="0.10.3"; sha256="1wh4wxzmdj154mh61ng4bg827hpx1kw85x34c1d7xdpbq3wag4g1"; depends=[colorspace ggplot2 lubridate plyr RColorBrewer testit zoo]; }; + WaveLetLongMemory = derive2 { name="WaveLetLongMemory"; version="0.1.0"; sha256="1qfh5ca8389b3zimqfrlhjyzkrvvj3dixhbab1a0wrnbcc55dcq1"; depends=[fracdiff wmtsa]; }; WaveletComp = derive2 { name="WaveletComp"; version="1.0"; sha256="16ghxqjbv39pmgd52im6ilkkh0hpnaw8ns0hwkngpbr479m1grdp"; depends=[]; }; WaverR = derive2 { name="WaverR"; version="1.0"; sha256="084fhzggzm075w6wp2lqd3j0an21idhw8z5l8ynz4y96mpmn204a"; depends=[kimisc MASS]; }; Weighted_Desc_Stat = derive2 { name="Weighted.Desc.Stat"; version="1.0"; sha256="030i12mnwlj976avvk3grrccgprsckmc35dm2ajwdfc9dijhypnj"; depends=[]; }; @@ -2713,166 +3327,199 @@ in with self; { WeightedPortTest = derive2 { name="WeightedPortTest"; version="1.0"; sha256="007v3w9ssiv2sds7sikpal27g6pxwxhs7bvcyw6kr0vg8gvlbi8h"; depends=[]; }; WhatIf = derive2 { name="WhatIf"; version="1.5-6"; sha256="02lqvirnf24jn8b2s08z5fjmpilp2z08lww1s793n3pn783adbky"; depends=[lpSolve]; }; WhiteStripe = derive2 { name="WhiteStripe"; version="1.1.1"; sha256="1naavgkvgky3lzg5vlz11g589cxr0fgiqz2waz86da1ksk4a19gw"; depends=[mgcv oro_nifti]; }; - WhopGenome = derive2 { name="WhopGenome"; version="0.9.3"; sha256="1lalx3vr8n66nb84psjvc1mgi1rp7g1bylhxr93yyp5w4lwcfv77"; depends=[]; }; - WiSEBoot = derive2 { name="WiSEBoot"; version="1.3.0"; sha256="0db7h357h3g7y5qw8f8lgjkv48nayc9p7alr468r9lpn2kk7z54j"; depends=[FAdist wavethresh]; }; + WhopGenome = derive2 { name="WhopGenome"; version="0.9.4"; sha256="085jzpgd1wgbsj68n5cixq6q4hw2sz485d9lpmch9qakhbpm7849"; depends=[]; }; + WiSEBoot = derive2 { name="WiSEBoot"; version="1.4.0"; sha256="1fch78884ay7m2gy602k8df78gkvjiwzkjk550w0k4xbv430ld0h"; depends=[FAdist wavethresh]; }; WikiSocio = derive2 { name="WikiSocio"; version="0.7.0"; sha256="1rc90cidc8mj8x7vw82vx41ivwnmil3cmc1whc8ghxrwli256w32"; depends=[httr igraph pbapply plyr RCurl stringr XML]; }; - WikidataR = derive2 { name="WikidataR"; version="1.0.1"; sha256="1c1mckbfyya9i2xd2a46fwfqyydxb6ayrlzgic2l12m5gdkzbxnr"; depends=[httr jsonlite WikipediR]; }; - WikipediR = derive2 { name="WikipediR"; version="1.3.0"; sha256="0ccxbz1vmfl73v6xcfpwnaxphdc7mcif09i4sk9nd58r1isbbhxn"; depends=[httr jsonlite]; }; + WikidataQueryServiceR = derive2 { name="WikidataQueryServiceR"; version="0.1.0"; sha256="17vnfarnqf5cqdldgwg505vcj2l0hji409zdyncks7xcq8myvswz"; depends=[dplyr httr jsonlite]; }; + WikidataR = derive2 { name="WikidataR"; version="1.2.0"; sha256="053gyls7bv4xb34jifxm5040zml2cwznna3brckf0191cvd5jgws"; depends=[httr jsonlite WikipediR]; }; + WikipediR = derive2 { name="WikipediR"; version="1.5.0"; sha256="1w4ggq42vlq7zbrz3v9ripz9yscbd8m8as60q7cplpxn9zqfdl7q"; depends=[httr jsonlite]; }; WikipediaR = derive2 { name="WikipediaR"; version="1.1"; sha256="0fxk247jb82g0f3nmwraa4kvdpjxy5s4dcyzj9vkjw2lq8by3l0h"; depends=[httr XML]; }; WilcoxCV = derive2 { name="WilcoxCV"; version="1.0-2"; sha256="1kbb7ikgnlxybmvqrbn4cd8xnqrkwipk4xd6yja1xsi39a109xzl"; depends=[]; }; + Wmisc = derive2 { name="Wmisc"; version="0.3.2"; sha256="1dyfpmsl1fdznnz79l8zkp6v4kxc9a260qp7g52mwxj9xw0jb0z7"; depends=[hash R6 Rcpp]; }; WordPools = derive2 { name="WordPools"; version="1.0-2"; sha256="1izs4cymf2xy1lax85rvsgsgi05ygf0ibi9gzxc96sbgvy4m78kf"; depends=[]; }; - WrightMap = derive2 { name="WrightMap"; version="1.2"; sha256="0d57wq639wgbs1kpr3ilzw70c3rz1i055n3flbyzvy49z9ghvcyp"; depends=[]; }; + Wrapped = derive2 { name="Wrapped"; version="1.0"; sha256="1c12yk0qw017ccdjr2hk6zxm93735hx7lwg2gp2cj15yb3rwnscf"; depends=[AdequacyModel ald cubfits evd fBasics gamlss_dist GeneralizedHyperbolic GEVStableGarch glogis irtProb LCA lqmm NormalLaplace normalp ordinal sgt SkewHyperbolic sld sn VarianceGamma VGAM]; }; + WrightMap = derive2 { name="WrightMap"; version="1.2.1"; sha256="16zp7h28fap5hq5xzvkb4lc217yhfmwzfbvw2lsni0gf9qxqkgqd"; depends=[]; }; WriteXLS = derive2 { name="WriteXLS"; version="4.0.0"; sha256="0nwxi36w3rkzw9j0qil64gakhb101rxg1wydjkwlpg0nbsj1sm50"; depends=[]; }; WufooR = derive2 { name="WufooR"; version="0.6.1"; sha256="0nshs1c00f2cw7wmrphz1833gd336bckqa9h0q90hxj388kwis3y"; depends=[dplyr httr jsonlite]; }; - XBRL = derive2 { name="XBRL"; version="0.99.16"; sha256="1wrcm8srn185qrba7rig3fvwjz1n2ab296i0jr71vhyp9417h40q"; depends=[Rcpp]; }; + XBRL = derive2 { name="XBRL"; version="0.99.17"; sha256="00dg9624hc1l8c0nw1ma4ykgkmjzk3gqf77ndnagddh65cqbiigq"; depends=[Rcpp]; }; + XGR = derive2 { name="XGR"; version="1.0.8"; sha256="1fy203927bai86pj80m275afvcpj78nil1yi99lf1jvmmfck7riv"; depends=[BiocGenerics dnet GenomicRanges ggplot2 igraph IRanges Matrix RCircos rtracklayer S4Vectors supraHex]; }; XHWE = derive2 { name="XHWE"; version="1.0"; sha256="1ca8y9q3623d0vn91g62nrqf3pkbcbkpclmddw5byd37sdrgsi5l"; depends=[]; }; - XLConnect = derive2 { name="XLConnect"; version="0.2-11"; sha256="02wxnr6h06h125dqszs8mzq4av842g445ndr59xgscxr03fyvi8p"; depends=[rJava XLConnectJars]; }; - XLConnectJars = derive2 { name="XLConnectJars"; version="0.2-9"; sha256="0js79297himq628cwx5cc3pcq3iv6p16bn4bpd5diyjaya4x27g3"; depends=[rJava]; }; - XML = derive2 { name="XML"; version="3.98-1.4"; sha256="09hiy5a875v2fhsgrsfymrwccn9249wnnsr6ck2slrig65svq2lw"; depends=[]; }; + XLConnect = derive2 { name="XLConnect"; version="0.2-12"; sha256="0b7nz5k3sai32fvpqzxim5ckcqrqmzd111qxm65369zvg3q281jh"; depends=[rJava XLConnectJars]; }; + XLConnectJars = derive2 { name="XLConnectJars"; version="0.2-12"; sha256="1wkdrvm6h1kpkfvwf5xcx7v1j06dmp6qxgiy5ca5b0qixhqg8sv7"; depends=[rJava]; }; + XML = derive2 { name="XML"; version="3.98-1.5"; sha256="0dcdj7ryn8lm7wmv4hqhh9jxa5k97l6ad8xyvb932yfkwj1g1byy"; depends=[]; }; XML2R = derive2 { name="XML2R"; version="0.0.6"; sha256="0azfh950r2b7ck3n1vzk3mdll7zy844nx3mbk676jxnj8gg7nxk5"; depends=[plyr RCurl XML]; }; XMRF = derive2 { name="XMRF"; version="1.0"; sha256="0jnyy9pcksfadznidqsbwh8nlqv3k0yppj76q8a2g0aidbdmg2cc"; depends=[glmnet igraph MASS Matrix snowfall]; }; XNomial = derive2 { name="XNomial"; version="1.0.4"; sha256="1mwx302576rmsjllbq2clfxilm3hkyp5bw0wmwqbn0kgv5wpy8z6"; depends=[]; }; + XR = derive2 { name="XR"; version="0.7"; sha256="1wvjvvwmp39i23v61x46b4cw90yf8khcn5c61icpms0rmxcbdc7n"; depends=[jsonlite]; }; + XRJulia = derive2 { name="XRJulia"; version="0.7"; sha256="0xcm8rkgg6l5p50x7mpzxx4ln29j8s2ngdswfmgb6vq48p7ws9gw"; depends=[XR]; }; + XRPython = derive2 { name="XRPython"; version="0.7"; sha256="1vgxby01ac8s9ldfnjdyg0yj0y0341w596pp4sx5szdrl359n0fn"; depends=[rPython XR]; }; + XRSCC = derive2 { name="XRSCC"; version="0.1"; sha256="0hs2whjsd02avaz79zkrd8gjw9qd7l6ysxmhx4w1r7gb1cj9rr7c"; depends=[]; }; XiMpLe = derive2 { name="XiMpLe"; version="0.03-23"; sha256="13vsf9l3s0scqvxwxj109n6vb7rx3a2hv5lbrnjk6rxjwl8iqrly"; depends=[]; }; Xmisc = derive2 { name="Xmisc"; version="0.2.1"; sha256="11gwlcyxhz1p50m68cnqrxmisdk99v8vrsbvyr7k67f0kvsznzs1"; depends=[]; }; YPmodel = derive2 { name="YPmodel"; version="1.3"; sha256="1vll33nm7xynnbq15wksk9c38jhjfd6l1bbzijn5skqc5yik1r5x"; depends=[]; }; YaleToolkit = derive2 { name="YaleToolkit"; version="4.2.2"; sha256="12wggdyz0wgnmxnqhp8bypyy1x1p50g49fwdzl2l43il44cdyv0g"; depends=[foreach iterators]; }; YieldCurve = derive2 { name="YieldCurve"; version="4.1"; sha256="0w47j8v2lvarrclnixwzaq98nv1xh2m48q5xvnmk7j9nsv2l3p68"; depends=[xts]; }; - YplantQMC = derive2 { name="YplantQMC"; version="0.6-4"; sha256="09galr2bcjvfpcp84znsv45j2cfyn4yhdx31kxs062sylys6kxld"; depends=[geometry gplots LeafAngle rgl]; }; + YplantQMC = derive2 { name="YplantQMC"; version="0.6-6"; sha256="153sznajgp4bjsjhn3xk6kbp68ihswdc48gn0y3wmg5xa15yrqlk"; depends=[geometry gplots LeafAngle maps rgl]; }; YuGene = derive2 { name="YuGene"; version="1.1.5"; sha256="1f1bia1q1z2rzp4pw218zglf02x1m9zpz5gqllrd77ggw8ilqfjc"; depends=[mixOmics]; }; - ZIM = derive2 { name="ZIM"; version="1.0.2"; sha256="1n4dc0as011gzaac153zq1dfbg1axvmf9znlmhl7xjj4dz4966qm"; depends=[MASS]; }; + ZIM = derive2 { name="ZIM"; version="1.0.3"; sha256="1497ki0pr0x21fz5wa2z6zgb2br99z56gvfxyn9cglqq45if6cjh"; depends=[MASS]; }; ZRA = derive2 { name="ZRA"; version="0.2"; sha256="1sx1q5yf68hhlb5j1hicpj594rmgajqr25llg7ax416j0m2rnagi"; depends=[dygraphs forecast]; }; ZeBook = derive2 { name="ZeBook"; version="0.5"; sha256="1djwda6hzx6kpf4dbmw0fkfq39fqh80aa3q9c6p41qxzcpim27dw"; depends=[deSolve triangle]; }; - Zelig = derive2 { name="Zelig"; version="5.0-11"; sha256="134s2d3038b8j2j6xsh0a3parzpqsr50vi67nfjpsxm27qrih27y"; depends=[AER Amelia dplyr geepack jsonlite MASS MatchIt maxLik MCMCpack plyr quantreg sandwich survey survival VGAM]; }; - ZeligChoice = derive2 { name="ZeligChoice"; version="0.9-0"; sha256="0mp59mkfbvayml3118kaxsvdqzh7mycnd27fy9dahapvb9qj408l"; depends=[dplyr jsonlite MASS VGAM Zelig]; }; + Zelig = derive2 { name="Zelig"; version="5.0-15"; sha256="1a55v03znczpbwlxd70dy73lzq75ifmqfkhwmwn7vdz8pdcsmiqx"; depends=[AER Amelia coda dplyr geepack jsonlite MASS MatchIt maxLik MCMCpack quantreg sandwich survey survival VGAM]; }; + ZeligChoice = derive2 { name="ZeligChoice"; version="0.9-3"; sha256="0wh10mzasl2mzn0afas2k9dqjsmdgnbjci9i9s1fqxgdil0jp09q"; depends=[dplyr jsonlite MASS VGAM Zelig]; }; + ZeligEI = derive2 { name="ZeligEI"; version="0.1-0"; sha256="1vkni4p1b0aq63l4nqg16f6a28c6ccm8nyg67z45x0yfq7xgcsi6"; depends=[dplyr ei eiPack jsonlite MASS MCMCpack Zelig]; }; + ZillowR = derive2 { name="ZillowR"; version="0.1.0"; sha256="1wrr58p76ps29fqzzwgfvfibxrvc72p2yzs5kc2rv1yxzzcpyxvb"; depends=[RCurl XML]; }; aCRM = derive2 { name="aCRM"; version="0.1.1"; sha256="0kzp568hd9c9a9qgniia5s5gv0q5f89xfvvwpzb197gqhs3x092v"; depends=[ada dummies kernelFactory randomForest]; }; aLFQ = derive2 { name="aLFQ"; version="1.3.3"; sha256="0ar325hwzmldviq7f8c478z95xlamvhwwmqs2fv6p3cx7l9k0kz6"; depends=[bio3d caret data_table lattice plyr protiq randomForest reshape2 ROCR seqinr]; }; - aRpsDCA = derive2 { name="aRpsDCA"; version="1.0.2"; sha256="1h1gkk5i77f9dl77dgw2vlm0s7mkmpc4dhcw5mdggyxx944kg33s"; depends=[]; }; + aRpsDCA = derive2 { name="aRpsDCA"; version="1.1.0"; sha256="128f3ggnqpdv12d1f1hpkq5nb1wdwihifvvb2k2ixizmhw7vn6dy"; depends=[]; }; aRxiv = derive2 { name="aRxiv"; version="0.5.10"; sha256="1q8nblb0kfdidcj1nwxn0fap87wpkg49z0bgmwayskwv1p860wrh"; depends=[httr XML]; }; - aSPU = derive2 { name="aSPU"; version="1.41"; sha256="1p9rfph1s2gwgi5vf2clqgy3mnh19ffxmpgg09q8x46g62dg35yw"; depends=[gee MASS matrixStats mvtnorm Rcpp RcppArmadillo]; }; + aSPU = derive2 { name="aSPU"; version="1.46"; sha256="01xysgyc7hj0pzidbmmg1119krcz1hvx52qbybijhjr3y0hw2mfi"; depends=[fields gee MASS matrixStats mvtnorm Rcpp RcppArmadillo]; }; aTSA = derive2 { name="aTSA"; version="3.1.2"; sha256="1p3spas0sxj08hkb8p6k2fy64w86prlw1hbnrqnrklr0hnkg2g54"; depends=[]; }; - abbyyR = derive2 { name="abbyyR"; version="0.3"; sha256="0x6c0ika129rgn4im1hhmfchqivdkfawi0sxkhkbxc9k1z41k95i"; depends=[curl httr readr RecordLinkage XML]; }; + aVirtualTwins = derive2 { name="aVirtualTwins"; version="1.0.0"; sha256="193289dm3nvmkx0dmclm1isz62jvvmhynnm1w1964v5nz2jc8vzd"; depends=[party randomForest rpart]; }; + abbyyR = derive2 { name="abbyyR"; version="0.5.0"; sha256="1i0mrh25mgl8aykprihsdm3zn0nsw0cr458rqnz7djff1j0mp8rg"; depends=[curl httr progress readr XML]; }; abc = derive2 { name="abc"; version="2.1"; sha256="0ngzaaz2y2s03fhngvwipmy4kq38xrmyddaz6a6l858rxvadrlhb"; depends=[abc_data locfit MASS nnet quantreg]; }; abc_data = derive2 { name="abc.data"; version="1.0"; sha256="1bv1n68ah714ws58cf285n2s2v5vn7382lfjca4jxph57lyg8hmj"; depends=[]; }; abcdeFBA = derive2 { name="abcdeFBA"; version="0.4"; sha256="1rxjripy8v6bxi25vdfjnbk24zkmf752qbl73cin6nvnqflwxkx4"; depends=[corrplot lattice rgl Rglpk]; }; - abcrf = derive2 { name="abcrf"; version="1.2"; sha256="13kfp1v5qimz8raa004f929xaknphjkp5w4kkj008svca3lp3a61"; depends=[doParallel doRNG foreach MASS randomForest]; }; + abcrf = derive2 { name="abcrf"; version="1.5"; sha256="1jfplr549cd6mpm694spc8ws0d56q3pa5wv1z57blayk4mxnczwv"; depends=[MASS ranger readr stringr]; }; abctools = derive2 { name="abctools"; version="1.0.4"; sha256="0y03sql473ylwcbiayl7rn4psc7d8ck0z6vbimnwpx73l143jww2"; depends=[abc abind plyr]; }; abd = derive2 { name="abd"; version="0.2-8"; sha256="191gspqzdv573vaw624ri0f5cm6v4j524bjs74d4a1hn3kn6r9b7"; depends=[lattice mosaic nlme]; }; abf2 = derive2 { name="abf2"; version="0.7-1"; sha256="0d65mc1w4pbiv7xaqzdlw1bfsxf25587rv597hh41vs0j0zlfpxx"; depends=[]; }; - abind = derive2 { name="abind"; version="1.4-3"; sha256="1km61qygl4g3f91ar15r55b13gl8dra387vhmq0igf0sij3mbhmn"; depends=[]; }; - abn = derive2 { name="abn"; version="1.0"; sha256="1nv9ibk9d58njjz24mswhdv7v9bf0icnjvavqyzh1l0g16aw0ih5"; depends=[Cairo]; }; + abind = derive2 { name="abind"; version="1.4-5"; sha256="0b1zd8jbnl6l292cr9rb50m09fy3ylxvzkpgi5lfb1nbzddcwfis"; depends=[]; }; + abjutils = derive2 { name="abjutils"; version="0.0.1"; sha256="0bgk522jxj31crzg3pa4pghz1sjx6gr3jchh9cwqdslr9ydd0g0j"; depends=[devtools dplyr httr magrittr stringr tibble]; }; + abn = derive2 { name="abn"; version="1.0.2"; sha256="0jxpw5mplnpc57jjg9w3zrik40g7va6s8m9zbfsyf0vqn645wfwq"; depends=[Cairo]; }; abodOutlier = derive2 { name="abodOutlier"; version="0.1"; sha256="1pvhgxmh23br84r0fbmv7g53z2427birdja96a67vqgz18r3fdvj"; depends=[cluster]; }; - abundant = derive2 { name="abundant"; version="1.0"; sha256="0n2yvq057vq5idi7mynnp15cbsijyyipgbl4p7rqfbbgpk5hy3qb"; depends=[QUIC]; }; - acc = derive2 { name="acc"; version="1.2.4"; sha256="17211jrpkn65p07x1547l650y33k3l8cmjj1jgk485kbr4kdzk99"; depends=[mhsmm nleqslv PhysicalActivity plyr zoo]; }; + abundant = derive2 { name="abundant"; version="1.1"; sha256="1m76qdmqvwpgm0sihazi2dna7cgsz9rljal18vgffb5wamwmg9k7"; depends=[QUIC]; }; + acc = derive2 { name="acc"; version="1.3.3"; sha256="1ii2vm47djxbixa75h690q1s2f9m9x6i8nkygik93j6dayr6kr1m"; depends=[circlize DBI ggplot2 iterators mhsmm nleqslv PhysicalActivity plyr R_utils Rcpp RcppArmadillo RSQLite zoo]; }; accelerometry = derive2 { name="accelerometry"; version="2.2.5"; sha256="00mn09j7y39sc7h5srnnfk2l73vhh6zq7rzc0vckfvs72lncmwv5"; depends=[Rcpp]; }; - accrual = derive2 { name="accrual"; version="1.1"; sha256="12zlv34pgmhcvisqk3x09hjpmfj91pn56pkjyj483mcf634m9ha4"; depends=[fgui SMPracticals]; }; - accrued = derive2 { name="accrued"; version="1.3.5"; sha256="10j8vrjgb43bggkf2gn518ccfard2f071mj6nwsxrzkm00pbx32v"; depends=[]; }; - acepack = derive2 { name="acepack"; version="1.3-3.3"; sha256="13ry3vyys12iplb14jfhmkrl9g5fxg3iijiggq4s4zb5m5436b1y"; depends=[]; }; + accelmissing = derive2 { name="accelmissing"; version="1.1"; sha256="0s2vy16zcpvbqyqz4ifdqccs6bfp8sf7azvfy8jjcm73xncv6ij3"; depends=[mice pscl]; }; + accrual = derive2 { name="accrual"; version="1.2"; sha256="1d9jis7d2fihkmwlqqvjl2kh6dcinzbffc9c0m4aqwzaq7c6ngjx"; depends=[fgui SMPracticals tcltk2]; }; + accrued = derive2 { name="accrued"; version="1.4.1"; sha256="05g1jb5914z18rcai1ahn7nihn27vr2rnadwv94gc1j7ivvikvs5"; depends=[]; }; + acebayes = derive2 { name="acebayes"; version="1.3.4"; sha256="0zg2yzbmmbv8nfgvncgc1hxrswxpj786pljlpmkib0iw9zvpy48w"; depends=[compare lhs Rcpp RcppArmadillo]; }; + acepack = derive2 { name="acepack"; version="1.4.1"; sha256="1f98rpfjmhd92rdc3j004plyfpjailz6j0ycysbac0kgj83haxc2"; depends=[]; }; acid = derive2 { name="acid"; version="1.1"; sha256="030i0y8s283ivbsmjccpbv9v7mgbcg2jk9df7vgcbbns74swf9hd"; depends=[gamlss gamlss_dist Hmisc]; }; acm4r = derive2 { name="acm4r"; version="1.0"; sha256="1wqzc35i1rshx0zlmas8y4qkkvy6h9r4i4apscjjv1xg2wjflzxa"; depends=[MASS]; }; acmeR = derive2 { name="acmeR"; version="1.1.0"; sha256="000b2hqlhj93958nddw0fqb15ahigs08najv2miivym046x04mf7"; depends=[foreign]; }; acnr = derive2 { name="acnr"; version="0.2.4"; sha256="1nry927zqhb34h9lcixr344n3sxvq1142zwgj8hadlw69dv8m59y"; depends=[R_utils xtable]; }; acopula = derive2 { name="acopula"; version="0.9.2"; sha256="1z8bs4abbfsdxfpbczdrf1ma84bmh7akwx2ki9070zavrhbf00cf"; depends=[]; }; acp = derive2 { name="acp"; version="2.1"; sha256="0lcwbjcyyr32m6qjmjqh25qjwrbyqj1n092xhgbhxzd8fslppnmn"; depends=[quantmod tseries]; }; + acrt = derive2 { name="acrt"; version="1.0.1"; sha256="0y9ndcq8ffpfrv7w9rikm4zn68jpsj6baqisq9kp2433xrwzdb6s"; depends=[Rcpp RcppEigen sandwich]; }; acs = derive2 { name="acs"; version="2.0"; sha256="0iddpjbswmxgqbly35gw1f9h3kv7yq3y72j9ngzq6xx00jarc3y7"; depends=[plyr RCurl stringr XML]; }; acss = derive2 { name="acss"; version="0.2-5"; sha256="0cqa60544f58l5qd7h6xmsir40b9hqnq6pqgd5hfx2j2l5n7qhmk"; depends=[acss_data zoo]; }; acss_data = derive2 { name="acss.data"; version="1.0"; sha256="09kl4179ipr8bq19g89xcdi1xxs397zcx5cvgp6viy8gn687ilgv"; depends=[]; }; - activity = derive2 { name="activity"; version="1.0"; sha256="1y1vy3kj9n21jvbyl3s5hllfkqp3z1rnn7701c5jxhay5dbdz3p2"; depends=[circular overlap pbapply]; }; - activpalProcessing = derive2 { name="activpalProcessing"; version="1.0"; sha256="1s84z9h68lwfinnr747brwbn4iai1axn7kh5nmlc6h41rchf64ja"; depends=[chron]; }; - actuar = derive2 { name="actuar"; version="1.2-0"; sha256="14zbp152wsrnflj08mj9hxr61lzb6lx4spxyw45l2rs65ahj8hd6"; depends=[]; }; - ada = derive2 { name="ada"; version="2.0-3"; sha256="1c0nj9k628bcl4r8j0rmyp5f1igdjq6qhjxyif6575fvn2gdzmbw"; depends=[rpart]; }; + activity = derive2 { name="activity"; version="1.1"; sha256="1lqajgxfps2h6amz1791vp3f52rs9ghmanq1nqfxqd2jmk3idkrx"; depends=[circular overlap pbapply]; }; + activpalProcessing = derive2 { name="activpalProcessing"; version="1.0.2"; sha256="1y0bjx2qx53iy930y9iww4q1yzjj8y16cwgixk1mq3w4g1f116d1"; depends=[chron]; }; + actuar = derive2 { name="actuar"; version="2.1-0"; sha256="0zmfhdii3k1bjcv7dk4ic21645j96z75mvrqgwhg926qfzifsick"; depends=[expint]; }; + ada = derive2 { name="ada"; version="2.0-5"; sha256="1h3a07czp0w3hrhjcg1fz721y8vsfclzqi3rq8qfzgpfb4h1f06r"; depends=[rpart]; }; adabag = derive2 { name="adabag"; version="4.1"; sha256="0a6hwcr0fg0a99y91i3wxrk6k0f7ldwvz9jr3akmiprc28v8r4zz"; depends=[caret mlbench rpart]; }; - adagio = derive2 { name="adagio"; version="0.6.3"; sha256="0f5sn25qx0zmwqphd06qppf9j7annqhqxax3jssg37yqjakbbln2"; depends=[quadprog]; }; + adagio = derive2 { name="adagio"; version="0.6.5"; sha256="0jy8g5604alaqbi5ynj95ig07igzbgk8x03a4x1rzkvfwvydfflz"; depends=[]; }; + adapr = derive2 { name="adapr"; version="1.0.2"; sha256="1mbl0b9njjf0zwddkylmwyvrridqqx69v9invxqhc5kc6fvk4f10"; depends=[devtools digest doParallel gdata ggplot2 git2r igraph knitr plotly plyr rmarkdown shiny shinydashboard]; }; adaptDA = derive2 { name="adaptDA"; version="1.0"; sha256="0nk7n628d30jz03a2rmpgzrwwd79rlpqvr6lwhilmkg1gblvz7r1"; depends=[MASS]; }; adaptMCMC = derive2 { name="adaptMCMC"; version="1.1"; sha256="1y1qxn3qm59nyy9ld5x30p452yam7b2fyl236b14xvpm8g3xx1fa"; depends=[coda Matrix]; }; adaptTest = derive2 { name="adaptTest"; version="1.0"; sha256="08d7a5dlzhaj236jvaw3c91008l66vf5i4k5anhcs32a3j8yh2iv"; depends=[lattice]; }; - adaptivetau = derive2 { name="adaptivetau"; version="2.2"; sha256="1xqvbbdmn70fmycpn0680q1l9s34kcmkjl812d7yrfxwm1bjfif5"; depends=[]; }; + adaptivetau = derive2 { name="adaptivetau"; version="2.2-1"; sha256="1hd2l1jv4i5mg0k0g8bbrvv43nk1zxbwh21594zayrzjyikb2593"; depends=[]; }; adaptsmoFMRI = derive2 { name="adaptsmoFMRI"; version="1.1"; sha256="1h79gh1bd6s2xhwf4whh72wf2cz4di2p8dnlf6192mfg108qc6nw"; depends=[coda Matrix MCMCpack mvtnorm spatstat]; }; - addhaz = derive2 { name="addhaz"; version="0.3"; sha256="1jkj5ldxlzz3cb87v2syzvzs0fwlc6dpjnapqkhfaqh1pvmwgnwi"; depends=[boot MASS Matrix]; }; + addhaz = derive2 { name="addhaz"; version="0.4"; sha256="0i3czmv538m8s3pnxrhh2a1mrdv9m3hgzjkb25p7hygwnzz54drg"; depends=[boot MASS Matrix]; }; addhazard = derive2 { name="addhazard"; version="1.0.0"; sha256="178rn3md0pgbg9nimvypj4c3paq3bgh2h06vqj3p0n78hrwf97rl"; depends=[ahaz rootSolve survival]; }; + addinslist = derive2 { name="addinslist"; version="0.2"; sha256="04jqhdy0axs1a9c0cfi3pqy9hd67jqxz79a2lj209gd27qv1q22c"; depends=[curl devtools DT miniUI rappdirs rmarkdown rvest shiny shinyjs xml2]; }; additivityTests = derive2 { name="additivityTests"; version="1.1-4"; sha256="048ds90wqjdjy1nyhna3m06asdklbh8sx1n556kss2j1r1pma1sw"; depends=[]; }; addreg = derive2 { name="addreg"; version="2.0"; sha256="1lc8p70di466i061jrbahq4hir4g5a8rns6044jjjg8v7b1y8alc"; depends=[combinat glm2]; }; - ade4 = derive2 { name="ade4"; version="1.7-4"; sha256="17sbicash7z4b63dlrbaf8xx2pbwh62vykzvhdjs43h8jkl881y7"; depends=[]; }; + ade4 = derive2 { name="ade4"; version="1.7-5"; sha256="0aaqbnydm5fb37nrvqj4bx6hxax7255j426cwh2lh88nyvznbq37"; depends=[]; }; ade4TkGUI = derive2 { name="ade4TkGUI"; version="0.2-9"; sha256="0kfnikkzhyfxskrphr65b8amjhdfq35x6dda4kivdhn7ak07s3ll"; depends=[ade4 adegraphics lattice tkrplot]; }; adegenet = derive2 { name="adegenet"; version="2.0.1"; sha256="045vc1s1n4ihw9id02c3w315pgfr004was2b0d6xb07ncipg9pby"; depends=[ade4 ape boot dplyr ggplot2 igraph MASS reshape2 seqinr shiny spdep vegan]; }; - adegraphics = derive2 { name="adegraphics"; version="1.0-5"; sha256="023ii21r3abw78wl1xjmn40rz2dplk3a402618xpwjk93ah74kgc"; depends=[ade4 KernSmooth lattice RColorBrewer sp]; }; + adegraphics = derive2 { name="adegraphics"; version="1.0-6"; sha256="0qahc6ld5nz6z81jv9yhh2cd27vh9n02swdf787fr83jgig43hja"; depends=[ade4 KernSmooth lattice latticeExtra RColorBrewer sp]; }; adehabitat = derive2 { name="adehabitat"; version="1.8.18"; sha256="1ng55j95hzhh853qa55mfx4xdh954ap8pqy01kyg5mgyn45i7rpa"; depends=[ade4 shapefiles sp tkrplot]; }; adehabitatHR = derive2 { name="adehabitatHR"; version="0.4.14"; sha256="0ljmn4zbg2lb5b2ckddbxd7ibbib1pzv4iv0ld2k3bv1mvn2j565"; depends=[ade4 adehabitatLT adehabitatMA deldir sp]; }; adehabitatHS = derive2 { name="adehabitatHS"; version="0.3.12"; sha256="06lrg1s3l7slbff17my62ap7mn6h3p6s8jnn7j8mrs48nvim00z9"; depends=[ade4 adehabitatHR adehabitatMA sp]; }; - adehabitatLT = derive2 { name="adehabitatLT"; version="0.3.20"; sha256="0sxi4dzd34p61d8dskj92nw7n4x9iflyf9fx48jxwb19lvy5902m"; depends=[ade4 adehabitatMA CircStats sp]; }; - adehabitatMA = derive2 { name="adehabitatMA"; version="0.3.10"; sha256="0b8nxk8339chhmjqjwsdlmy9nf729p0fgyh2hd1q93grgds9p1rs"; depends=[sp]; }; - adephylo = derive2 { name="adephylo"; version="1.1-6"; sha256="1sk639gmk3cs711xn68mx18r28kjd1pychcg89qlki03y1hnxg7j"; depends=[ade4 adegenet ape phylobase]; }; + adehabitatLT = derive2 { name="adehabitatLT"; version="0.3.21"; sha256="0anyvijvlrq7c0a77dpcyq60yl1jc817rj5cb3s9iq6scicymp87"; depends=[ade4 adehabitatMA CircStats sp]; }; + adehabitatMA = derive2 { name="adehabitatMA"; version="0.3.11"; sha256="1911zdpwyr1gqyjvnn5w3blhk0mjafy0xmr3l6l749lx4cwa08d9"; depends=[filehash sp]; }; + adephylo = derive2 { name="adephylo"; version="1.1-10"; sha256="1hj9nkl2z2xdb5yv9a7fb7zn9sd41lrhk2ff5z8s88xab3b2vhnc"; depends=[ade4 adegenet ape phylobase]; }; + adespatial = derive2 { name="adespatial"; version="0.0-7"; sha256="0abbds2f43dcri50crlz2fbqy444zp4bhbs81zdiby5fz64m9gr5"; depends=[ade4 adegraphics lattice MASS shiny sp spdep]; }; adhoc = derive2 { name="adhoc"; version="1.0"; sha256="193adddarjkc2kk1xncfkm919s1lkmc1yzgyz9793p74nqmfsj0a"; depends=[ape polynom spider]; }; - adimpro = derive2 { name="adimpro"; version="0.7.8"; sha256="06zwdgl7g4azg2mn7p35may8hsjcvf2dz7dj86zqngjspda123s4"; depends=[]; }; + adimpro = derive2 { name="adimpro"; version="0.8.2"; sha256="0nfzk9pp4p16c1nvpidngag96r845376h8ljh7m6p6rhk9fs4jdw"; depends=[awsMethods]; }; adlift = derive2 { name="adlift"; version="1.3-2"; sha256="0nzg16vhm5qg3xzczi3f6cynvp9ym2jsfrc4fdyxq7bwp9kry2i4"; depends=[EbayesThresh]; }; + admixturegraph = derive2 { name="admixturegraph"; version="1.0.2"; sha256="0ld4qyyvbnr5lz9ff64wjwif4c9xnqyjmbfgbl9bk6pia98zppl3"; depends=[doParallel dplyr foreach ggplot2 MASS neldermead pracma]; }; ads = derive2 { name="ads"; version="1.5-2.2"; sha256="17k24dihl41jgkkglhnkj7lvvl53dgahjkb5jhfmfgk6i16c7s23"; depends=[ade4 spatstat]; }; + advclust = derive2 { name="advclust"; version="0.4"; sha256="1g8a8q4zh6d4152jb66fh7wj7k6ks5k4kfcazzw70jdn10yi6b38"; depends=[clue ggplot2 knitr MASS reshape2]; }; adwave = derive2 { name="adwave"; version="1.1"; sha256="0kkwgcyxddzmrb8h1w1f4xy2cq40b86q0lxwfdhx25z3zjc4m1ni"; depends=[waveslim]; }; - aemo = derive2 { name="aemo"; version="0.1.0"; sha256="1iik0rrqkkx9n1qb1pvq5iwxqmvs6vnx8z80hdzb5vqq0lvi1bsx"; depends=[assertthat dplyr lubridate stringr]; }; - afex = derive2 { name="afex"; version="0.15-2"; sha256="0fcrl3lmrrdp1x4rxghfrmpa1v0pz87kwwmbqmg2qpvvzib8r9fa"; depends=[car coin lme4 lsmeans Matrix reshape2 stringr]; }; + aemo = derive2 { name="aemo"; version="0.2.0"; sha256="11msifszq7pzmcmwibf2dk2j5dqjc74hrxdxshlprkp6p8sfhijh"; depends=[assertthat dplyr lubridate stringr]; }; + afex = derive2 { name="afex"; version="0.16-1"; sha256="0y0q7lbdraw8sn4l9qazvdawqpsyjzhfzddp9gii8w72a69s90dq"; depends=[car coin lme4 lsmeans Matrix pbkrtest reshape2 stringr]; }; + after = derive2 { name="after"; version="1.0.0"; sha256="0r0cdb0jspqi5vmaighwwqc0636wc5m297nq1j3n84w7z2aglg2w"; depends=[]; }; aftgee = derive2 { name="aftgee"; version="1.0-0"; sha256="0gfp05r6xvn9fcysbqyzkz916axpsc2d3lb5wmb1v92z1zw3037b"; depends=[BB geepack MASS survival]; }; - agRee = derive2 { name="agRee"; version="0.4-0"; sha256="19nvn2hiijn81wgqhx7s6blr2ilzx6p2s2qx1lw9shmnsmyywmss"; depends=[coda lme4 miscF R2jags]; }; + agRee = derive2 { name="agRee"; version="0.5-0"; sha256="16ijw02x5qvc8rppf0yn35aljd35alnvjkjyi6725nywjib2xy5x"; depends=[coda lme4 miscF R2jags]; }; agop = derive2 { name="agop"; version="0.1-4"; sha256="1jwyl02z053rsdw9hryv1nyj9wlq310l51fghp1p0j51c159mlpx"; depends=[igraph Matrix]; }; - agricolae = derive2 { name="agricolae"; version="1.2-3"; sha256="0lly0dpdmc2kk843mdpj7gawffysf2yc31shsyhqlnf0sibblmik"; depends=[AlgDesign cluster klaR MASS nlme spdep]; }; + agricolae = derive2 { name="agricolae"; version="1.2-4"; sha256="115k72riidc2dmq6gz52vqv63ijwj6akdwp31k14qmlv3a28asiz"; depends=[AlgDesign cluster klaR MASS nlme spdep]; }; agridat = derive2 { name="agridat"; version="1.12"; sha256="1b3dgrp6mkfpfaywqdm22sakadhnl1vlyj1n3rq6bc2f0gf8kcrw"; depends=[lattice reshape2]; }; - agrmt = derive2 { name="agrmt"; version="1.40.1"; sha256="06pd9svpvw38x5skdqz6fhax92wgrxjkdpw5qfph4hgqx53dxz9p"; depends=[]; }; + agrmt = derive2 { name="agrmt"; version="1.40.4"; sha256="1y2gnq6b4zkxknygg73r8qrd435y7c69iqn8i56kwk1ccc1rwddx"; depends=[]; }; agsemisc = derive2 { name="agsemisc"; version="1.3-1"; sha256="1905q35jgjhghlawql43yh296kbpysp927x3hj750yshz5zayzyr"; depends=[lattice MASS]; }; ahaz = derive2 { name="ahaz"; version="1.14"; sha256="1z7w5rxd5cya7kxhgxqvn72k87y33ginxra9g7j9wrfs5jgx6kvx"; depends=[Matrix survival]; }; - ahp = derive2 { name="ahp"; version="0.2.8"; sha256="07h6z4qp0jhfmjavk18cc3j95wg4jyfclpz4rcj93j484qj0f1aa"; depends=[data_tree DiagrammeR formattable yaml]; }; + ahp = derive2 { name="ahp"; version="0.2.11"; sha256="09n06k5dmmpw6h6s51x9xy6rkk54fswss8pflh3v9nprbx7vzx4i"; depends=[data_tree DiagrammeR formattable yaml]; }; aidar = derive2 { name="aidar"; version="1.0.0"; sha256="01vs14bz4k504q5lx65b60kyi7hgvjdmib8igiipjmg4snwh8hdk"; depends=[XML]; }; - akima = derive2 { name="akima"; version="0.5-12"; sha256="10lbx69val6ysy6gk5nn1nl0ldgg90xfnj5snf9kdixfapi8vxnk"; depends=[sp]; }; + aimPlot = derive2 { name="aimPlot"; version="1.0.0"; sha256="1d52b7kccxba6j7n0gbd7pzs0p87zn32vv8gdf2f7lyr75qzgz7x"; depends=[ggplot2]; }; + airGR = derive2 { name="airGR"; version="1.0.5.12"; sha256="02nasl8qamvbggwwfpgjfgqazfs1bfv6h48r1kab9wynpgqknynm"; depends=[]; }; + akima = derive2 { name="akima"; version="0.6-2"; sha256="1klprj4a2pgy5pwdwnrn3siisi2lh8hr4z6vz38sdvjkcmakxnk1"; depends=[sp]; }; akmeans = derive2 { name="akmeans"; version="1.1"; sha256="1nqbxbx583n0h2zmpy002rlmr6j86j6bg76xj5c69brrh59dpyw1"; depends=[]; }; alabama = derive2 { name="alabama"; version="2015.3-1"; sha256="0mlgk929gdismikwx4k2ndqq57nnqj7mlgvd3479b214hksgq036"; depends=[numDeriv]; }; - alakazam = derive2 { name="alakazam"; version="0.2.3"; sha256="0z2kmzv33qyb7iawzndynpl1n395sk05lx3a31qbin6f1yc55lrp"; depends=[dplyr ggplot2 igraph lazyeval scales seqinr stringi]; }; - ald = derive2 { name="ald"; version="1.0"; sha256="1vphmqhx6wlzsz3s94jsa4mk6wpacp93wfgpj0vp9ljfb3aplhik"; depends=[]; }; + alakazam = derive2 { name="alakazam"; version="0.2.5"; sha256="1mc6riwycizbmr7mx6r4fs513ij8g14fgs5ngg2rai7cp58796cc"; depends=[data_table dplyr ggplot2 igraph lazyeval Rcpp scales seqinr stringi]; }; + ald = derive2 { name="ald"; version="1.1"; sha256="1ar9mrvfw2jz4js9prbp9icsync7fw6wpirpximsr4cy1klqjfpn"; depends=[]; }; + algorithmia = derive2 { name="algorithmia"; version="0.0.2"; sha256="0kly70l9si8ni8n5xm30vai70pvfvip6354scvjqj34362s0lm0a"; depends=[base64enc httr rjson xml2]; }; algstat = derive2 { name="algstat"; version="0.0.2"; sha256="1ssdrrwnxrhx3syndqxqcaldlbnjamk3x2yiq7jgxy0qsiadmqsi"; depends=[mpoly Rcpp reshape2 stringr]; }; - alineR = derive2 { name="alineR"; version="1.1.2"; sha256="11ddg93iaq4xpg5rfw8qi82qhnmw6qnbzzsahr80xc0qn3p94i7d"; depends=[]; }; + alineR = derive2 { name="alineR"; version="1.1.3"; sha256="000rywvianwi0xm0ccsmc7g2hl9d0zjl3qplidrr7rz872f6snwm"; depends=[]; }; allan = derive2 { name="allan"; version="1.01"; sha256="02bv9d5ywbq67achfjifb3i7iiaaxa8r9x3qvpri2jl1cxnlf27m"; depends=[biglm]; }; allanvar = derive2 { name="allanvar"; version="1.1"; sha256="142wy1mf4jbp4hy756rz95w24f4j1dgf14f1n5sd09dg4w98j7xg"; depends=[gplots]; }; - alleHap = derive2 { name="alleHap"; version="0.9.2"; sha256="1hi764kczvza6kkqdnw8rk30r8rf1zfj1lbjiq9xc2lnfminxwiv"; depends=[abind]; }; + alleHap = derive2 { name="alleHap"; version="0.9.7"; sha256="1fpfi8d6fb1r41fq18b35ngzfmbm9qq0lvdbbgahlgjf9n0zbp30"; depends=[abind]; }; allelematch = derive2 { name="allelematch"; version="2.5"; sha256="1kws6y3igq6l85cfjrck2dzcfpgr56ridbc6w071h8kjw19mlzas"; depends=[dynamicTreeCut]; }; allelic = derive2 { name="allelic"; version="0.1"; sha256="0xs4kd3vqb5ph8kqc3lcqgirrdkz8b627pvnczvci2g0sr3cl18j"; depends=[]; }; + alluvial = derive2 { name="alluvial"; version="0.1-2"; sha256="039frwrsxq1lb97s7vf2vbyyadimkigs628ymym06fxka53drdkp"; depends=[]; }; alm = derive2 { name="alm"; version="0.4.0"; sha256="125cl5b1sps33ipsh2pygrw79mhin1qj374lq56ny7c9rp4n9w7p"; depends=[ggplot2 httr jsonlite lubridate plyr reshape reshape2 stringr]; }; - alphaOutlier = derive2 { name="alphaOutlier"; version="1.1.0"; sha256="0agca8dbypp2r08x7b4pscyz280m4l27ckkcvg1plk412v0n8dq8"; depends=[nleqslv quantreg Rsolnp]; }; + alphaOutlier = derive2 { name="alphaOutlier"; version="1.2.0"; sha256="09yrbv7jsiymw5gzp8p92ki70v1fys2k75x4sb9s7wy3c58wn1cd"; depends=[nleqslv quantreg Rsolnp]; }; + alphabetr = derive2 { name="alphabetr"; version="0.2.2"; sha256="1pmp6zwhgycb38y5jbvrbv2nza7gyjh508vy09ml483c2cysvc1r"; depends=[clue dplyr multicool Rcpp]; }; alphahull = derive2 { name="alphahull"; version="2.1"; sha256="129b2j9j60p2wvbb8703x18pydv1g715vmjcb1a80v70i93w4f49"; depends=[ggplot2 R_utils sgeostat spatstat splancs tripack]; }; alphashape3d = derive2 { name="alphashape3d"; version="1.2"; sha256="1apbirffqipdj618qgqh7vjlhg9fp6ncxb0yk4dclpn7g645863x"; depends=[geometry rgl]; }; alr3 = derive2 { name="alr3"; version="2.0.5"; sha256="0zrrsv2kjq3cky3bhk6gp32p1qpr1i5k2lx7c1w08bql0nb1x740"; depends=[car]; }; alr4 = derive2 { name="alr4"; version="1.0.5"; sha256="0m8jgc4mfni17psf8m0avf0m364vcq5k3c9x807p98ch2z5nsygv"; depends=[car effects]; }; - altmeta = derive2 { name="altmeta"; version="1.0"; sha256="1rca3qkx8ba39qjf35wmshdgdx0wmkpcmid22fvjbkkl8vr2m4h3"; depends=[]; }; + altmeta = derive2 { name="altmeta"; version="2.2"; sha256="1k3p06v8ccj0dbjfpl4nw6579bwcy4j925rk15v55khqmrlx780l"; depends=[]; }; amap = derive2 { name="amap"; version="0.8-14"; sha256="1dz37z9v4zvyvqrs4xvpfv468jwvpxav60qn2w0049bw8llj6xdl"; depends=[]; }; - ameco = derive2 { name="ameco"; version="0.2.2"; sha256="1r2gnd4mq3vdil8igh5n50yldz0g8g3syv4xv757fymwg6w7lk7g"; depends=[]; }; + ameco = derive2 { name="ameco"; version="0.2.6"; sha256="1jbkw79kv6b83kv1s2id2xrljzbz25bc7yqld3p8dfpngcpmgvq8"; depends=[]; }; amei = derive2 { name="amei"; version="1.0-7"; sha256="0dyx6a1y5i0abwka0y89d0mpj55rm5ywb4r9c2mqmy43djp181hn"; depends=[]; }; amen = derive2 { name="amen"; version="1.1"; sha256="084bl46sxn2sxslcpi9lm22k6x8cz1jld228l0iardy4vmh4cxdk"; depends=[]; }; aml = derive2 { name="aml"; version="0.1-1"; sha256="09xxlxp784wlb561apns3j8f2h9pfk497cy5pk8wr4hhqqv4d3al"; depends=[lars]; }; + ampd = derive2 { name="ampd"; version="0.2"; sha256="0bi8qngd37n60ym516yjcahxc536vdwm60rq5ld32170hww69j7c"; depends=[]; }; anacor = derive2 { name="anacor"; version="1.0-6"; sha256="0nq3jhai586d3980y8raqmbhh8snd5bpx5z8mlwrxvkmr62hcrpl"; depends=[car colorspace fda rgl scatterplot3d]; }; - analogsea = derive2 { name="analogsea"; version="0.3.0"; sha256="14mh9lbbzxv75aprm2gixz05pyy5lh46ysflkdnnnpj2c5mpj2k9"; depends=[httr jsonlite magrittr yaml]; }; + analogsea = derive2 { name="analogsea"; version="0.5.0"; sha256="1lfa8vl42n2wjl8r4m0144sircrrdvcanjd85l5m54r4vack846p"; depends=[httr jsonlite magrittr yaml]; }; analogue = derive2 { name="analogue"; version="0.17-0"; sha256="00wk4jnzif28ibx9s3m68qdx64ycdgg5yr6ybb0srlydikvf1sy8"; depends=[brglm lattice MASS mgcv princurve vegan]; }; - analogueExtra = derive2 { name="analogueExtra"; version="0.1-0"; sha256="0hyl0vn2i594r5czzha7y9a1n4dpznfpmh2j46mci2r57p2s3qr2"; depends=[analogue rgl vegan3d]; }; + analogueExtra = derive2 { name="analogueExtra"; version="0.1-1"; sha256="1s3qs10hf6hkna0bicid1mc8x8r449bl93xpgyw6lnsjgh2yx62c"; depends=[analogue rgl vegan3d]; }; + analytics = derive2 { name="analytics"; version="1.0"; sha256="1f5jmc0j3r8y401d9j0acl83d3mp63a2n4hsmxznph2vva9y9kxc"; depends=[cluster MASS powerplus]; }; analyz = derive2 { name="analyz"; version="1.4"; sha256="0qdh1gld2dkl0krbhm2vcqg8dfs03dn51rclgsw02554s06dlgxw"; depends=[]; }; - anametrix = derive2 { name="anametrix"; version="1.6"; sha256="14xrrnvz7jn1jqds48l5pvzlx6hsaxrjc932lqnvv70sfypinjkm"; depends=[pastecs RCurl XML]; }; + anametrix = derive2 { name="anametrix"; version="2.0.0"; sha256="1dnmz7mpm1rsw61a39pkby0jsiprwk0g74h09g3r4vbn4k93r375"; depends=[dplyr plyr RCurl XML]; }; anapuce = derive2 { name="anapuce"; version="2.2"; sha256="0qs27as628090k3sq5b14l90g7qdp23d0jz5lb1wxsgi3ji0f7qj"; depends=[]; }; anchors = derive2 { name="anchors"; version="3.0-8"; sha256="12gd2526y7s2a8i6b9xma2c3sc6zxnwzl6sn8b50hbxizwr8d34j"; depends=[MASS rgenoud]; }; andrews = derive2 { name="andrews"; version="1.0"; sha256="130i86qkdy1xpcf611jpzqgmd17iik7j7spdcfwzk48f31biyp8v"; depends=[]; }; - anesrake = derive2 { name="anesrake"; version="0.70"; sha256="17127rmjfrdwnr2m6205cci3b0kd9girp82qranxwac4mgb7p7ld"; depends=[Hmisc]; }; + anesrake = derive2 { name="anesrake"; version="0.75"; sha256="1blq1blyq122jlj2yp8l7gam49q6h1wg6c9v0kkfkmnh5dwgz3mm"; depends=[Hmisc weights]; }; anfis = derive2 { name="anfis"; version="0.99.1"; sha256="1v8di5dzwb1g1ldi7idcmmr9nirp9kxvc8km1qq1i8zaw1bh8pqb"; depends=[]; }; + aniDom = derive2 { name="aniDom"; version="0.1"; sha256="0nffgszifar9da8310ymhfns19xnnnjh49rlvaxxk711h0a72fc5"; depends=[rptR]; }; anim_plots = derive2 { name="anim.plots"; version="0.1"; sha256="0qjwmxpkvjf27parh1fvhrkiczm4zlv9c034dp04yysbdz65r1by"; depends=[animation]; }; animalTrack = derive2 { name="animalTrack"; version="1.0.0"; sha256="0jlvfflpaq64s48sblzh1n1vx8g3870iss97whigri29s6hn79ry"; depends=[rgl]; }; animation = derive2 { name="animation"; version="2.4"; sha256="092xqnnr16rdf9yx68l6qgq4gg2ghdk31s4liycx71kvn6kr3vss"; depends=[]; }; + anocva = derive2 { name="anocva"; version="0.1.0"; sha256="1kira0bs3yjmsq7zrd4y5zzl948pz3rgbfsvkzidi2n6vvcl5344"; depends=[cluster]; }; anoint = derive2 { name="anoint"; version="1.4"; sha256="10gdqgag9pddvxh80h458gagvv1474g4pcpa71cg3h7g62rqvmv5"; depends=[glmnet MASS survival]; }; anominate = derive2 { name="anominate"; version="0.5"; sha256="0qhq3ngxi1d3yln6bafg3c36a7whnznnww0101da2y0i6dw79lg5"; depends=[coda MCMCpack oc pscl wnominate]; }; anonymizer = derive2 { name="anonymizer"; version="0.2.0"; sha256="0zlzxcqy8fjhh6ab58a1pi0k686dzgap58d160ms6bsr5mgn3fbf"; depends=[]; }; antitrust = derive2 { name="antitrust"; version="0.95.1"; sha256="14qz4c78lyfhgh3xyybn2sb8kl4rjzvb3dwrwxl9dzjmk5k6ab7i"; depends=[BB evd ggplot2 MASS numDeriv]; }; + anytime = derive2 { name="anytime"; version="0.2.1"; sha256="0grz40c4wv8z174b7avrj2fcfbr3clmvbrqjgmvi6x3ww6sqfppm"; depends=[BH Rcpp]; }; aod = derive2 { name="aod"; version="1.3"; sha256="1a6xs5d5289w69xd2salsxwikjjhjzvsnplqrq78b1sr6kzfyxz3"; depends=[]; }; aods3 = derive2 { name="aods3"; version="0.4-1"; sha256="074c16wmgd1vc2yvwx1y84bg55hvmm5yi8zgpwh51jcsbqlhbpgn"; depends=[boot lme4]; }; aoos = derive2 { name="aoos"; version="0.4.0"; sha256="16kkgbk54fqn18pm2psw6v1g71vl8xrc9mk0na5zh83ag69cjqcz"; depends=[magrittr roxygen2]; }; - aop = derive2 { name="aop"; version="0.99.5"; sha256="1mncia5m79m1nw2kwfsrf62i2dlmxdcwj0rrrs95s51b7c6d369h"; depends=[graph igraph Rgraphviz rjson]; }; + aop = derive2 { name="aop"; version="1.0.0"; sha256="1i3mixiwcvqygbcvj6f9vm223plmydzmixpy6nhis2zv9d90vakd"; depends=[ggplot2 graph igraph plyr Rgraphviz rjson]; }; aoristic = derive2 { name="aoristic"; version="0.6"; sha256="0b9h2l59vvrvbjjwwb43j74frvwa8lsj4x5kwhwpsfjfch1yqwjl"; depends=[classInt ggplot2 GISTools lubridate maptools MASS plotKML RColorBrewer reshape2 rgdal sp spatstat]; }; apTreeshape = derive2 { name="apTreeshape"; version="1.4-5"; sha256="0mvnjchhfbpbnrgnplb6qxa7r2kkvw29gqiprwggkf553wi6zl48"; depends=[ape quantreg]; }; - apaStyle = derive2 { name="apaStyle"; version="0.2"; sha256="1vkbjlqn36f51yn7vmrcm74airi3mc5i70h2848gcb87f7zcwbh9"; depends=[ReporteRs]; }; + apa = derive2 { name="apa"; version="0.1.0"; sha256="1a5xhybx43xgwf68fkxrqwj6azj70jpsrp2fwi1m7gvn4klcv3wh"; depends=[dplyr magrittr purrr rmarkdown stringr]; }; + apaStyle = derive2 { name="apaStyle"; version="0.4"; sha256="0ckxp37p1aizvs5sql54xvpimhq4m4944x18ihqffhpzb3dxw1ba"; depends=[ReporteRs]; }; apaTables = derive2 { name="apaTables"; version="1.0.4"; sha256="1ncs79n0jvr6m9gmaazi5d9g2c6c6hf8alrb45z8fy8sj9bj51hn"; depends=[car MBESS rockchalk]; }; - apc = derive2 { name="apc"; version="1.2"; sha256="1977d17sxky256jdh0ikyrm3d7kdn4kl5170jxc63nwdfnmh2ns3"; depends=[lattice]; }; + apc = derive2 { name="apc"; version="1.3"; sha256="1hgkqkvry9is8kjk2w46k637sig7fdznnc75wbrc8bq1hbrmf785"; depends=[lattice]; }; apcluster = derive2 { name="apcluster"; version="1.4.3"; sha256="1pqcxh83189388qqc6cngqnsygvpx4kjy0j2r8ykcgxvdwi8r58m"; depends=[Matrix Rcpp]; }; - ape = derive2 { name="ape"; version="3.4"; sha256="11cfw02gm5i21p4k7c8sfg9xmzg57bn9n6zr2j1wryily31gifsz"; depends=[lattice nlme]; }; - apex = derive2 { name="apex"; version="1.0.1"; sha256="188hczb39dqi6xq2hbwhgas9jj9y7bbcsdz0kczimkbqwd9rz7cp"; depends=[adegenet ape phangorn]; }; - aplore3 = derive2 { name="aplore3"; version="0.7"; sha256="1xj3k13wjpsydcrai474b94kyj298islzfpfwn8n51k67h8r4l08"; depends=[]; }; + apdesign = derive2 { name="apdesign"; version="1.0.0"; sha256="041zyd7ih9nnj92jj9vb9ya1ij9lmj1dzx64q74vyiadw1ix5l66"; depends=[Matrix]; }; + ape = derive2 { name="ape"; version="4.1"; sha256="0959fiiy11rzfzrzaknmgrx64bhszj02l0ycz79k5a6bmpfzanlk"; depends=[lattice nlme]; }; + apex = derive2 { name="apex"; version="1.0.2"; sha256="0p2sjpjg3b6i0ya99hkx2vl40w97k34z0z6ccnz08sfg3fyjiv24"; depends=[adegenet ape phangorn]; }; + aplore3 = derive2 { name="aplore3"; version="0.9"; sha256="0af6klscsxvh4amp519b6r41bzysf61p040fj4l5706bbya1arhw"; depends=[]; }; aplpack = derive2 { name="aplpack"; version="1.3.0"; sha256="0i6jy6aygkqk5gagngdw9h9l579lf0qkiy5v8scq5c015w000aaq"; depends=[]; }; apmsWAPP = derive2 { name="apmsWAPP"; version="1.0"; sha256="1azgif06dsbadwlvv9nqs8vwixp6balrrbpj62khzmv1jvqr4072"; depends=[aroma_light Biobase DESeq edgeR genefilter gtools multtest seqinr]; }; appell = derive2 { name="appell"; version="0.0-4"; sha256="0g7pzhxqgscnyf07xycbrpyimp1z1hljgcr3nqigpx09w7zi5wlw"; depends=[]; }; @@ -2881,149 +3528,191 @@ in with self; { approximator = derive2 { name="approximator"; version="1.2-6"; sha256="165qvx5946wkv1qsgbmjhmwvik7m23r1vbpnp7claylflgj1ycnm"; depends=[emulator]; }; aprean3 = derive2 { name="aprean3"; version="1.0.1"; sha256="17rnq02sncl6rzwyln10200s43b8z1s2j0kdi9kgcb6qr51v12rv"; depends=[]; }; apricom = derive2 { name="apricom"; version="1.0.0"; sha256="1gyd1yln14cn0iswj7sjs4hav6j6d4f3ncps4gqbci5fwha5blcr"; depends=[logistf penalized rms shrink]; }; - aprof = derive2 { name="aprof"; version="0.3.1"; sha256="1zlpx72lhrc0jwfr4qydh64gvmwy52krfym1slz51r51w31q84x9"; depends=[]; }; + aprof = derive2 { name="aprof"; version="0.3.2"; sha256="1rv7nr1y7jdvj2p8c6p67sn11bvmif2kj70fb2029hnsjk7lm15b"; depends=[]; }; apsimr = derive2 { name="apsimr"; version="1.2"; sha256="14vhsm6am2c2q2sgabnhxr0lgldifss0anjpisrhjqk04njllviy"; depends=[ggplot2 lubridate MASS mgcv reshape2 XML]; }; apsrtable = derive2 { name="apsrtable"; version="0.8-8"; sha256="1qmm89npjgqij0bh6p393wywl837lfsshp2mv9b5izh1sg2qfwvw"; depends=[]; }; apt = derive2 { name="apt"; version="2.5"; sha256="1y18bqnnxy5p0xx9gbfrnrzq3nlhw3psl5zlibrw6lfhb8lxd4mk"; depends=[car copula erer gWidgets urca]; }; aqfig = derive2 { name="aqfig"; version="0.8"; sha256="0ha0jb5ag3zx6v7c63lsm81snslzb8y8g565mxjmf7vxpcmzzqsi"; depends=[geoR]; }; - aqp = derive2 { name="aqp"; version="1.9.3"; sha256="0805d05dvid7s67anlrw61bsdz21hii2c41ar9q8377rzvb4cfsd"; depends=[cluster digest Hmisc lattice MASS plotrix plyr RColorBrewer reshape scales sp stringr]; }; + aqp = derive2 { name="aqp"; version="1.10"; sha256="1c8vj10mygsrlixx4pwfs1xk69bvhdi37hl4p1v6g3nwvsr8f7ac"; depends=[cluster digest Hmisc lattice MASS plotrix plyr RColorBrewer reshape scales sp stringr]; }; aqr = derive2 { name="aqr"; version="0.4"; sha256="04frgil3nbxsww66r9x0c6f308pzqr1970prp20bdv9qm3ym5axw"; depends=[RCurl xts]; }; - archdata = derive2 { name="archdata"; version="1.0"; sha256="1hs2pgdaixifqjnwcbrjxlrzng0r2vmv6pdzghsyvzlg28rnq2rk"; depends=[]; }; + arabicStemR = derive2 { name="arabicStemR"; version="1.2"; sha256="1vflynbi7aln7x2p4jg9gsvfrxn4v6qkb4wbrzxmj561lqy9fcay"; depends=[]; }; + arc = derive2 { name="arc"; version="1.0"; sha256="1arms8crr198i4niq1wvp8ig474hlgjx63q0m96f8w6fsz63knqy"; depends=[arules discretization Matrix R_utils]; }; + archdata = derive2 { name="archdata"; version="1.1"; sha256="07ca51kl5imy6d9s0qi501xxl3zn4q3gbm0w8kvznfw8imclq17z"; depends=[]; }; archetypes = derive2 { name="archetypes"; version="2.2-0"; sha256="1djzlnl1pjb0ndgpfj905kf9kpgf9yizrcvh4i1p6f043qiy0axf"; depends=[modeltools nnls]; }; archiDART = derive2 { name="archiDART"; version="1.4"; sha256="1ymk56w07jj51p2r4g7qa4a3nyhnjrbn6igxgn6644mm0v118b8h"; depends=[XML]; }; - archivist = derive2 { name="archivist"; version="2.0.3"; sha256="13yncsy3g213d9x6wsm05kaxkccfwwa6l9phc13asajw7dyiwirb"; depends=[DBI digest httr lubridate magrittr RCurl RSQLite]; }; - archivist_github = derive2 { name="archivist.github"; version="0.1"; sha256="0s6b5fcghm307n0z4pa6m1kg9a3w1cnlhy1hcs36pmbvlid6xva6"; depends=[archivist digest git2r httr jsonlite]; }; + archivist = derive2 { name="archivist"; version="2.1.2"; sha256="1d6bm9hdaj1lfbismv50qdzz3v91pvw28ijjxvhnaa4yqq9qh967"; depends=[DBI digest httr lubridate magrittr RCurl RSQLite]; }; + archivist_github = derive2 { name="archivist.github"; version="0.2.2"; sha256="04xb2i47y12ic87gb2l30bldil0505h7s9601hq0afjg3npx6jq7"; depends=[archivist digest git2r httr jsonlite]; }; arf3DS4 = derive2 { name="arf3DS4"; version="2.5-10"; sha256="12cbrk57c9m7fj1x7nfmcj1vp28wj0wymsjdz8ylxhm3jblbgmxc"; depends=[corpcor]; }; arfima = derive2 { name="arfima"; version="1.3-4"; sha256="0348zkr8h5la1vh66fifl1fn21hp03k34zv5ga29crmwvvsvk8pi"; depends=[ltsa]; }; argosfilter = derive2 { name="argosfilter"; version="0.63"; sha256="0rrc2f28hla0azw90a5gk3zj72vxhm1b6yy8ani7r78yyfhgm9ig"; depends=[]; }; - argparse = derive2 { name="argparse"; version="1.0.1"; sha256="03p8dpwc26xz01lfbnmckcx6wzky43dyq71085b0anzsavgx0786"; depends=[findpython getopt proto rjson]; }; - argparser = derive2 { name="argparser"; version="0.3"; sha256="1lwlkrh8hq4p02jmb76nss9qjrgyf5fqqzifv9z8ff1lk7szgmy4"; depends=[]; }; - arm = derive2 { name="arm"; version="1.8-6"; sha256="1bdjzq1da9nwfll4ial74ln920f2i19n4mwc5f4a5lwqrk4c69c7"; depends=[abind coda lme4 MASS Matrix nlme]; }; + argparse = derive2 { name="argparse"; version="1.0.4"; sha256="1qyca2kmvks338v48g7bqzg3gc6vn3cynwn77liqk42kwd327g8g"; depends=[findpython getopt proto rjson]; }; + argparser = derive2 { name="argparser"; version="0.4"; sha256="0s1wxshx4jk69wfxhycx973q6y8cmqrfymyjklhq1i8xrj0kmmx9"; depends=[]; }; + arm = derive2 { name="arm"; version="1.9-3"; sha256="00773z8ai07s9wa2annzjqrxml3z13fh9zqls0z1n7s3h8fwrvqw"; depends=[abind coda lme4 MASS Matrix nlme]; }; arnie = derive2 { name="arnie"; version="0.1.2"; sha256="14xkgyfn9zvkbgram15w7qzqc5pl1a8ig66cif7a79najrgd914r"; depends=[]; }; aroma_affymetrix = derive2 { name="aroma.affymetrix"; version="3.0.0"; sha256="1i6swcg13sajsr2r49ga3qnkiza87ql49v96mjwaj0s5x23szknp"; depends=[aroma_apd aroma_core future listenv MASS matrixStats R_cache R_devices R_filesets R_methodsS3 R_oo R_utils]; }; aroma_apd = derive2 { name="aroma.apd"; version="0.6.0"; sha256="1l9p5qww71h6wlg2z15wirsfz2i7hmf637l17zaf3n7fp9s3flc7"; depends=[R_huge R_methodsS3 R_oo R_utils]; }; aroma_cn = derive2 { name="aroma.cn"; version="1.6.1"; sha256="1d9g81b12a3m03wrvb3cvg33fjybgiabpxhci2y2rr6diay42pmr"; depends=[aroma_core matrixStats PSCBS R_cache R_filesets R_methodsS3 R_oo R_utils]; }; aroma_core = derive2 { name="aroma.core"; version="3.0.0"; sha256="0y0hydf2b2fp2dn2fqxbdqsf2r04rk7y1s2wwm1dg3p6nzsgnypk"; depends=[future listenv matrixStats PSCBS R_cache R_devices R_filesets R_methodsS3 R_oo R_rsp R_utils RColorBrewer]; }; - arrApply = derive2 { name="arrApply"; version="1.0.4"; sha256="0sm0msprajh6mc36pjc8dkhiqmk6553gra43p5kg444lfw57yd57"; depends=[Rcpp RcppArmadillo]; }; - arrayhelpers = derive2 { name="arrayhelpers"; version="0.76-20120816"; sha256="1q80dykcbqbcigv2f9xg1brfm3835i0zvs0810q6kh682a3hpqbi"; depends=[]; }; + arrApply = derive2 { name="arrApply"; version="2.0.1"; sha256="007fsqgb9bsr4mscljhp37dvrk7cv6nrb7y28w8kc7mxvgdq29wg"; depends=[Rcpp RcppArmadillo]; }; + arrayhelpers = derive2 { name="arrayhelpers"; version="1.0-20160527"; sha256="1ib91hpg6xgy0jr4sb8ib19x0v4f5n96lak0qm0z5vksawgcnp1l"; depends=[svUnit]; }; ars = derive2 { name="ars"; version="0.5"; sha256="0m63ljb6b97kmsnmh2z5phmh24d60iddgz46i6ic4rirshq7cpaz"; depends=[]; }; - artfima = derive2 { name="artfima"; version="1.2"; sha256="1a4kagi3lh8fbs75zy30hbd4jcm88a9ngrxj52l97hb910w20wz1"; depends=[gsl ltsa]; }; - arules = derive2 { name="arules"; version="1.4-0"; sha256="1xgawdl3zb4hlydqwqwffjh9d8k1iwpcr43bkhz9v8hs7capn948"; depends=[Matrix]; }; + arsenal = derive2 { name="arsenal"; version="0.2.0"; sha256="1rwzgza4dy1xyi0p157yfhwr1bwwk6bxbkb31752av34nvddl4cm"; depends=[broom stringr]; }; + artfima = derive2 { name="artfima"; version="1.5"; sha256="1nqsq9fsqk9kag9n7i2r9yvf578nkdfrkkv7qy8650prka0jca2p"; depends=[gsl ltsa]; }; + arules = derive2 { name="arules"; version="1.5-0"; sha256="0x75ggaaqnhikkpk2rhwnzbg1lakch7kykw6q9iw6wzvq8qbmnmi"; depends=[Matrix]; }; + arulesCBA = derive2 { name="arulesCBA"; version="1.0.2"; sha256="0sckrw702ah5dphbixfinnb0g9sca7r12k91c564aigfj3yspc1s"; depends=[arules caret Matrix testthat]; }; arulesNBMiner = derive2 { name="arulesNBMiner"; version="0.1-5"; sha256="1q4sx6c9637kc927d0ylmrh29cmn4mv5jxxpl09yaclzfihjlk9a"; depends=[arules rJava]; }; - arulesViz = derive2 { name="arulesViz"; version="1.1-0"; sha256="0kapvhrbxsn8pw6gfabnswzzgwgs621riq54xrlswicn5p2ywgxy"; depends=[arules colorspace igraph scatterplot3d seriation vcd]; }; + arulesSequences = derive2 { name="arulesSequences"; version="0.2-17"; sha256="1ch2k70k713h5vr3g7ddzv1bsgpyiaf6i6jjf7jmvcc4m6pcg2s1"; depends=[arules]; }; + arulesViz = derive2 { name="arulesViz"; version="1.2-0"; sha256="1vdcrqw5m4ca379y4xapz8azifnv608lna0mx3kl7zi6iy8ysn61"; depends=[arules colorspace DT igraph plotly scatterplot3d seriation vcd]; }; + as_color = derive2 { name="as.color"; version="0.1"; sha256="1y5qpm0pabfk5qvgx6s2vqqxfhp1x99g7dva24zay34nvf4bxrzn"; depends=[]; }; asVPC = derive2 { name="asVPC"; version="1.0.2"; sha256="07nfwr0lsfpwgfdgzcdn1svw8dnjfni5ga9q77yjd1bj0wf76ci2"; depends=[ggplot2 plyr]; }; - asaur = derive2 { name="asaur"; version="0.44"; sha256="08f04vvd0v22l56mq1f0nmpi5qr085kc2lax3yd74jxcybn5nrnk"; depends=[]; }; - asbio = derive2 { name="asbio"; version="1.3-1"; sha256="1avzy32fblvn977ciri96gr1b8iia3yc3546n69c8lvy3ybdp4fb"; depends=[deSolve lattice multcompView mvtnorm pixmap plotrix scatterplot3d]; }; + asaur = derive2 { name="asaur"; version="0.50"; sha256="0c1rgic76w3i2xhna7i52lyc0p01s5b1mxyn55gqw6i19v9mq0b3"; depends=[]; }; + asbio = derive2 { name="asbio"; version="1.3-4"; sha256="02jpbc4lsca6bvp8ljv7nb452diz7maas6y3kjg07v3hgmwrkwvy"; depends=[deSolve lattice multcompView mvtnorm pixmap plotrix scatterplot3d]; }; ascii = derive2 { name="ascii"; version="2.1"; sha256="19dfbp7k4bjxjn8wdzhbmz7g3za6gn8vcnd5qkm4dz7gg1fg7b8p"; depends=[]; }; - asd = derive2 { name="asd"; version="2.0"; sha256="1nnsbh6g0bhvhp6644zf2l6frr3qnls0s7y7r0g211b5zagq20z3"; depends=[mvtnorm]; }; + asd = derive2 { name="asd"; version="2.2"; sha256="0p3r4qjam3sl3rpcilb0pgx4xx3ly71xqnvkv31vzjs885lgxz4l"; depends=[mvtnorm]; }; asdreader = derive2 { name="asdreader"; version="0.1-2"; sha256="0lfm0c5nzm276zaaxxwkpkqca5xg9r6ysfpgl6wvdbbvs9s83x4a"; depends=[]; }; ash = derive2 { name="ash"; version="1.0-15"; sha256="1ay2a2agdmiz7zzvn26mli0x0iwk09g5pp4yy1r23knhkp1pn2lb"; depends=[]; }; - asht = derive2 { name="asht"; version="0.5"; sha256="04wlvn4j8c8c3sxsa9ydb1garb7px768xvrnr6ywhb722srwi5gy"; depends=[bpcp coin exact2x2 exactci ssanv]; }; - asnipe = derive2 { name="asnipe"; version="0.85"; sha256="0mp8gbi0390hdrdyhsmyj100w1zzzj78cyilkr9fzp176qqy1b6c"; depends=[]; }; + ashr = derive2 { name="ashr"; version="2.0.5"; sha256="0blr19ipcanwjxizilkd8hb37dlhb6idjcw2lf0ll8pkd2l68f5z"; depends=[assertthat doParallel etrunct foreach pscl Rcpp SQUAREM truncnorm]; }; + asht = derive2 { name="asht"; version="0.8"; sha256="0j8fabrdpnp7y8pa7crjx976hngyvm2zy0chdp4p44pgcs4dn071"; depends=[bpcp coin exact2x2 exactci ssanv]; }; + aslib = derive2 { name="aslib"; version="0.1"; sha256="0dkb6bb6dqavjklbciqxqhi3fdqib9asdnhiap2gp9b9wfnkyq7k"; depends=[BatchExperiments BatchJobs BBmisc checkmate corrplot ggplot2 llama mlr parallelMap ParamHelpers plyr reshape2 RWeka stringr yaml]; }; + asnipe = derive2 { name="asnipe"; version="1.1.3"; sha256="1kg58k52wiwcqgxgzsvrcn10j5gcl395mw4vky4k85kmcw1h63ks"; depends=[MASS Matrix]; }; aspace = derive2 { name="aspace"; version="3.2"; sha256="1g51mrzb6amafky2kg2mx63g6n327f505ndhna6s488xlsr1sl49"; depends=[Hmisc shapefiles splancs]; }; aspect = derive2 { name="aspect"; version="1.0-4"; sha256="1kxddm8v1y0v2r7lg24r1wpzk7lqzxlrpzq5xb9kn343g53lny6i"; depends=[]; }; - asremlPlus = derive2 { name="asremlPlus"; version="2.0-3"; sha256="0by2d8inwgyi79gqiivgxkm1xxy58jzyp4n76q21kwzqxj8agjgk"; depends=[dae ggplot2]; }; - assertive = derive2 { name="assertive"; version="0.3-2"; sha256="11zyia1pynr82zc98cdlv7zfpg7ncx0gg2a4ry7sy5n06l4nvcrs"; depends=[assertive_base assertive_code assertive_data assertive_data_uk assertive_data_us assertive_datetimes assertive_files assertive_matrices assertive_models assertive_numbers assertive_properties assertive_reflection assertive_sets assertive_strings assertive_types knitr]; }; - assertive_base = derive2 { name="assertive.base"; version="0.0-5"; sha256="0w43pplkqc51cxpfhni7q4hiqy6pq5s7rhwi9ja73yfglrh1rnrk"; depends=[]; }; + aspi = derive2 { name="aspi"; version="0.2.0"; sha256="0rhvxw243vvdv3hxa6pi343gcjc2cbxq1jzqirl9k1l4i3897l87"; depends=[]; }; + asremlPlus = derive2 { name="asremlPlus"; version="2.0-12"; sha256="119r7wwrz11j85idq21xdp2wq7l2jly73q3179d3bsywbmx5sr17"; depends=[dae ggplot2]; }; + assertable = derive2 { name="assertable"; version="0.2.1"; sha256="0q204l1wlnwvlf72lzaqfxf5x88h53c8zva5vmiq0c825h2v67an"; depends=[data_table]; }; + assertive = derive2 { name="assertive"; version="0.3-5"; sha256="0blbbhlxcb5ffdxqxi62xs33ljiawh6s22a0pyvbbh79jf46rzr3"; depends=[assertive_base assertive_code assertive_data assertive_data_uk assertive_data_us assertive_datetimes assertive_files assertive_matrices assertive_models assertive_numbers assertive_properties assertive_reflection assertive_sets assertive_strings assertive_types knitr]; }; + assertive_base = derive2 { name="assertive.base"; version="0.0-7"; sha256="1xs3ysvj0z57c58jw57pckq2rynia6ks4rmjmc02alczhk54wbgh"; depends=[]; }; assertive_code = derive2 { name="assertive.code"; version="0.0-1"; sha256="0drdrc9ljznkz52lvpwx0mvrghl0wf6dffzc3msz8lnvraxmanyw"; depends=[assertive_base assertive_properties assertive_types]; }; assertive_data = derive2 { name="assertive.data"; version="0.0-1"; sha256="0pjw7rf76d99awd8i4krmhbyks39lx89c9pb4j49nmz3w6x3z233"; depends=[assertive_base assertive_strings]; }; assertive_data_uk = derive2 { name="assertive.data.uk"; version="0.0-1"; sha256="0z2hpvfl34zzy9sncmihcj1ir5nnm9d05j7ip7j83by2pfwsjdhf"; depends=[assertive_base assertive_strings]; }; assertive_data_us = derive2 { name="assertive.data.us"; version="0.0-1"; sha256="0nfwfkaczbmxaj4bpyibcvsypigkn5j2syn2wb4d2grm7virk9bk"; depends=[assertive_base assertive_strings]; }; - assertive_datetimes = derive2 { name="assertive.datetimes"; version="0.0-1"; sha256="1fm85kzpdfzg8f6c7janpk5p6s4llk9yghmiwwqm54d4dgjkav10"; depends=[assertive_base assertive_types]; }; - assertive_files = derive2 { name="assertive.files"; version="0.0-1"; sha256="0fc0qki4kpdq0zw51s2xc9gxrzsngx4mb859m8x16k2phmy83z1z"; depends=[assertive_base assertive_numbers]; }; + assertive_datetimes = derive2 { name="assertive.datetimes"; version="0.0-2"; sha256="00a98fx8p3pr3ckayh8wmxmm4rz01s67wah9697m92yci6pv3m78"; depends=[assertive_base assertive_types]; }; + assertive_files = derive2 { name="assertive.files"; version="0.0-2"; sha256="02pfz8j5vwcj5kl6zca46894li7lxwnlrr29j922f14ay6kdssmy"; depends=[assertive_base assertive_numbers]; }; assertive_matrices = derive2 { name="assertive.matrices"; version="0.0-1"; sha256="1vk0i860r87rc5x0navai8xx9ixqyp96waxlk6j5p8y8hrpiyyif"; depends=[assertive_base]; }; assertive_models = derive2 { name="assertive.models"; version="0.0-1"; sha256="1pkyssavld57njmv545bfa3a7dmyrgpsvr9vdhqmrmcpc55w89cj"; depends=[assertive_base]; }; - assertive_numbers = derive2 { name="assertive.numbers"; version="0.0-1"; sha256="0wsnk6nxcxhbq09gzrp3g7l4nzxyhkbxiyv4yzh1hqqqry066hsa"; depends=[assertive_base]; }; - assertive_properties = derive2 { name="assertive.properties"; version="0.0-2"; sha256="1bh9h56zq6yrhvsjm9pzdz30f2hb1k51rvsn9y1ifhn8syvzvpnf"; depends=[assertive_base]; }; - assertive_reflection = derive2 { name="assertive.reflection"; version="0.0-2"; sha256="1mr1fi3ij8srpgl812imi0jyi44gnyhrrr4x5s1lwn4mwzjw657r"; depends=[assertive_base]; }; - assertive_sets = derive2 { name="assertive.sets"; version="0.0-2"; sha256="0azs5nqzm03m1f5yhci49y51phnw85yk2yk9a8qka3mcd0kin9rw"; depends=[assertive_base]; }; - assertive_strings = derive2 { name="assertive.strings"; version="0.0-2"; sha256="0181mj61fjj3gz74zwr6cb4mq7fclsbyh1zdlnpfmy3vzpmcpsb5"; depends=[assertive_base assertive_types]; }; - assertive_types = derive2 { name="assertive.types"; version="0.0-2"; sha256="0s2yq8ycrmpr5m35psz4546shrcp5q1rz28pmh3s5f5y7gvqidxa"; depends=[assertive_base assertive_properties]; }; - assertr = derive2 { name="assertr"; version="1.0.0"; sha256="0z7cgksjc0a7niar9f26f0512ln0a7cifyqcfrbhar552dnkg33i"; depends=[dplyr lazyeval MASS]; }; + assertive_numbers = derive2 { name="assertive.numbers"; version="0.0-2"; sha256="0jc3ss64j4m7bjydhagwwmka5n7c72vpw4kfcch0m5jvkq5qrqds"; depends=[assertive_base]; }; + assertive_properties = derive2 { name="assertive.properties"; version="0.0-4"; sha256="0sqs54acs9qk9kvm32rxzfbzxz1l8mjahpfnw7r30z2brgz661jw"; depends=[assertive_base]; }; + assertive_reflection = derive2 { name="assertive.reflection"; version="0.0-4"; sha256="19zmsbn00crfqm0kwd9ys5gv87xs3gi6wmlikrz9xiwzm7hp4dhj"; depends=[assertive_base]; }; + assertive_sets = derive2 { name="assertive.sets"; version="0.0-3"; sha256="1cqvh2syvh5b6d85h601zjmsdbbf3h8q98ids4dfl4frdshpasc7"; depends=[assertive_base]; }; + assertive_strings = derive2 { name="assertive.strings"; version="0.0-3"; sha256="0n6jrk88670g4ym0r8ii40a08a90z1xadj8wcryk8h0nl04dchfm"; depends=[assertive_base assertive_types stringi]; }; + assertive_types = derive2 { name="assertive.types"; version="0.0-3"; sha256="0zxq1jfrzgw95ll7alvm0xnk7aihjdksngq4ya2whyvfjbmv4vdb"; depends=[assertive_base assertive_properties codetools]; }; + assertr = derive2 { name="assertr"; version="1.0.2"; sha256="1l0j0jxg5dr6c1hkigwpmr04df30s0cqpy64brrkl8jkwf4c1ji1"; depends=[dplyr lazyeval MASS]; }; assertthat = derive2 { name="assertthat"; version="0.1"; sha256="0dwsqajyglfscqilj843qfqn1ndbqpswa7b4l1d633qjk9d68qqk"; depends=[]; }; + assignPOP = derive2 { name="assignPOP"; version="1.1.1"; sha256="11786lxnrwi4gb1nddk8bkz7h9wyjiav8gajss43cybhiwpcy0p1"; depends=[caret doParallel e1071 foreach ggplot2 MASS randomForest reshape2 stringr tree]; }; assist = derive2 { name="assist"; version="3.1.3"; sha256="0ngnn75iid5r014fcly29zhcfpqkqq24znncc3jdanbhdmfyybyz"; depends=[lattice nlme]; }; assortnet = derive2 { name="assortnet"; version="0.12"; sha256="1vyzrb8vsi9pcdn6jd83k77bg0q2a3dwdvlnmxnshqiif2pakb8m"; depends=[]; }; aster = derive2 { name="aster"; version="0.8-31"; sha256="1rn9hp7dg81rd14ckmfz23aav3ywm7i3w46jx66kqbrfs7kdrslq"; depends=[trust]; }; aster2 = derive2 { name="aster2"; version="0.2-1"; sha256="1gr9hx0mhyan0jy7wsl4ccsx9ahlvhfiq0j1xnffa4m3hzazisn5"; depends=[]; }; astro = derive2 { name="astro"; version="1.2"; sha256="1c7zrycgj2n8gz50m94ys1dspilds91s1b2pwaq6df1va17pznby"; depends=[MASS plotrix]; }; astroFns = derive2 { name="astroFns"; version="4.1-0"; sha256="0g5q0y067xf1ah91b4lg8mr9imj0d6lgig7gbj3b69fn335k363g"; depends=[]; }; - astrochron = derive2 { name="astrochron"; version="0.5"; sha256="16zgjc5x5dzscvb1cki65p23c3kp1rad2x82bjcr4i0hg8xqs4ig"; depends=[fields IDPmisc multitaper]; }; + astrochron = derive2 { name="astrochron"; version="0.6.5"; sha256="141nw03ggxc4p297g799kvk15sa6n5apf733kg7w9bbfgqwm4aa5"; depends=[fields IDPmisc multitaper]; }; astrodatR = derive2 { name="astrodatR"; version="0.1"; sha256="00689px4znwmlp6qbj6z2a51b7ylx1yrrjpv6zjkvrwpv6lyj9fw"; depends=[]; }; astrolibR = derive2 { name="astrolibR"; version="0.1"; sha256="0gkgry5aiz29grp9vdq9zgg6ss47ql08nwcmz1pfvd0g0h9h75l8"; depends=[]; }; - astsa = derive2 { name="astsa"; version="1.3"; sha256="01bslr6hww029097244r5l4bz4v7z46gpihw39har8h0xicl6ywk"; depends=[]; }; + astsa = derive2 { name="astsa"; version="1.7"; sha256="1rzl1ayzv8lnn2009j4v667pp8sxdbn7qbqqyjpq00c75f4wss6x"; depends=[MASS]; }; asymLD = derive2 { name="asymLD"; version="0.1"; sha256="1q05pxwn6arpalspgf2m0cym4ivnwyv94i58k9kaihd37kvm5lgc"; depends=[]; }; + asymmetry = derive2 { name="asymmetry"; version="1.2"; sha256="08xq0m3z0z8j875792hx6c3i7ssdxi62mbnpchsvwwa930nzdk3j"; depends=[gplots rJava smacof]; }; asympTest = derive2 { name="asympTest"; version="0.1.3"; sha256="11nlkgws3y8xbz3yli55414a2rkk7367q9q5r2ssa61jaiimibhh"; depends=[]; }; asypow = derive2 { name="asypow"; version="2015.6.25"; sha256="0il38djkmw5ka7czpalmhq6yycx7flpdpgbd7p5nx52rsjdv49mj"; depends=[]; }; atmcmc = derive2 { name="atmcmc"; version="1.0"; sha256="05k69b5wlysz3kh0yiqvshgvr0nyz34zkvn6bjs30cwz7s9j21pn"; depends=[]; }; atsd = derive2 { name="atsd"; version="1.0.8441"; sha256="1jz2bdgvk1wamrm8r9ygprhyf0z3mdk9c1pwlb4bfmwvbnqd0yqa"; depends=[httr RCurl]; }; + attrCUSUM = derive2 { name="attrCUSUM"; version="0.1.0"; sha256="113y40v9hyvnvvzvyqg81n0n1h84pj4zph5q8p0vc0384hw00544"; depends=[Rcpp RcppArmadillo]; }; attribrisk = derive2 { name="attribrisk"; version="0.1"; sha256="1zqx53mxz2hh9jyanf3jkadgpj44jbqrk4p13fas91zvhpw9pn5s"; depends=[boot survival]; }; auRoc = derive2 { name="auRoc"; version="0.1-0"; sha256="1ijk127p6g5mzc7b4b9lnjnfzvklz3g8w6bckrdahlw7djd9mgz1"; depends=[coda MBESS ProbYX rjags]; }; aucm = derive2 { name="aucm"; version="2016.1-2"; sha256="1nyxxyivs6inq8r18x7fl3zkpn75sczwnbzsv672nzdlqj5d2b5f"; depends=[kyotil]; }; audio = derive2 { name="audio"; version="0.1-5"; sha256="1hv4052n2r6jkzkilhkfsk4dj1xhbgk4bhba2ca9nf8ag92jkqml"; depends=[]; }; audiolyzR = derive2 { name="audiolyzR"; version="0.4-9"; sha256="09jsrjy15vcn6da0kgk06ghayyrf3s853gqv8qdawg745ky2hbgi"; depends=[hexbin plotrix RJSONIO]; }; audit = derive2 { name="audit"; version="0.1-1"; sha256="0hrcdcwda5c0snskrychiyfjcbnymkcl2x43bapb6inw9y8989qv"; depends=[]; }; + autoSEM = derive2 { name="autoSEM"; version="0.1.0"; sha256="0s58dnpr7zyclk5vwaf7a2id6paqsnb224f0gpmj2nms4klsw323"; depends=[GA lavaan snowfall]; }; autoencoder = derive2 { name="autoencoder"; version="1.1"; sha256="0ly1aanayk28nx6yqfhl7d0zm4vg6rfjikf5ibn8zhmkrfyflj1y"; depends=[]; }; + autoimage = derive2 { name="autoimage"; version="1.1"; sha256="0yi6n60b72qw20bp2hchxn653c3a9x2yvgawkqs31xbkq0s50rbc"; depends=[fields ggplot2 mapproj maps viridis]; }; automap = derive2 { name="automap"; version="1.0-14"; sha256="1190kbmp0x80x0hyifdbblb4ijq79kvrfn9rkp5k6diig4v30n0w"; depends=[gstat lattice reshape sp]; }; + automultinomial = derive2 { name="automultinomial"; version="1.0.0"; sha256="15cxnqaai2dln6jvk7lpfqvlpv5237zn18axp459p5zxcgg0lw88"; depends=[Hmisc igraph MASS Matrix]; }; autopls = derive2 { name="autopls"; version="1.3"; sha256="1qf5gk1vsz1p5670w7bgzh3b15wvrx1gy6ih4sivw0vj8bcjxbw9"; depends=[pls]; }; autovarCore = derive2 { name="autovarCore"; version="1.0-0"; sha256="08h51bh1m3d47nprd5z7v3k3lkrixbxwinr73zd5442wskf4x82v"; depends=[Amelia jsonlite Rcpp urca vars]; }; - averisk = derive2 { name="averisk"; version="1.0.1"; sha256="18gr7nv826sxh085rd8vqbg6isbhans47a2prff2rxwy9jjn8dvg"; depends=[MASS]; }; - aws = derive2 { name="aws"; version="1.9-4"; sha256="11vbsg4yhnl4995m8gq5gykrlk61y3a618g2zxkc9wdf5z4xqdny"; depends=[awsMethods gsl]; }; - aws_signature = derive2 { name="aws.signature"; version="0.2.0"; sha256="0g2cxhvf27h1in9iwb74y85rg3w4w4py608f2ybdjgix3lxk60ag"; depends=[digest]; }; - awsMethods = derive2 { name="awsMethods"; version="1.0-3.1"; sha256="0iswk1ijnxwik66crcplldkbfp5flbgk15xap1ys2jp6nwhlw3qw"; depends=[]; }; + averisk = derive2 { name="averisk"; version="1.0.2"; sha256="0k7f0l7bx76q5x8cam2z0q6akc9a6zj0pj0644v8gbr40n2y5snz"; depends=[MASS]; }; + aws = derive2 { name="aws"; version="1.9-6"; sha256="0mfq44pji0p6d7s1wbwi0f97lsh3f33wnj8fiyimpg9fv8lr4inz"; depends=[awsMethods gsl]; }; + aws_alexa = derive2 { name="aws.alexa"; version="0.1.2"; sha256="0ddgsk8bj51dz43flkxha73m7cmqbi63bp4ascwd3yp8645jjx6h"; depends=[aws_signature httr plyr XML]; }; + aws_ec2metadata = derive2 { name="aws.ec2metadata"; version="0.1.1"; sha256="0xzilzvrvzhna1iyhjb5r9k1wbd7545sc1yjcf69r35585gnm8rr"; depends=[curl jsonlite]; }; + aws_polly = derive2 { name="aws.polly"; version="0.1.2"; sha256="0ij0rbng8q7xfa08p4x1l1lcmskmz3fy2pvln28zxqbs6jbc22rm"; depends=[aws_signature httr jsonlite tuneR]; }; + aws_ses = derive2 { name="aws.ses"; version="0.1.4"; sha256="13hf4iqhnpkm9rnr7nzwky663vplnkjrgk90zix91cn2fvaspjgp"; depends=[aws_signature httr jsonlite]; }; + aws_signature = derive2 { name="aws.signature"; version="0.2.6"; sha256="0cd92kymlmcm1940s57p025blckbvavwx9rsrrsn13p7b03xwakf"; depends=[base64enc digest]; }; + aws_sns = derive2 { name="aws.sns"; version="0.1.5"; sha256="1l013yczlvgbi07xfdslfrwmnc39j58f6kfqwa8j4kdxb0h58lq4"; depends=[aws_signature httr jsonlite xml2]; }; + aws_sqs = derive2 { name="aws.sqs"; version="0.1.8"; sha256="1qgq2jbm523jb4qhzjbpq2f04saanwarz6nnhyn4g3dliv3fhsf6"; depends=[aws_signature httr jsonlite xml2]; }; + awsMethods = derive2 { name="awsMethods"; version="1.0-4"; sha256="0n4mxn9fkqkvv19mfaqhrmhwhmkxiahfnls47b5ki3a3gsr6cm8l"; depends=[]; }; + awsjavasdk = derive2 { name="awsjavasdk"; version="0.2.0"; sha256="1461h565il4y68g0a3k7wgn9jyb6pys8405f780ldg6g44aa7p60"; depends=[assertthat R_utils rappdirs rJava]; }; aylmer = derive2 { name="aylmer"; version="1.0-11"; sha256="1b6dryvfz9yp00nj8lv8j1isnshcgwn9fx41knah9pw7dn4pxkk2"; depends=[Brobdingnag]; }; b6e6rl = derive2 { name="b6e6rl"; version="1.1"; sha256="17scdskn677vaxx1h2jypqaffvjgczryplg17nr3wigi1x0cxg7a"; depends=[]; }; bPeaks = derive2 { name="bPeaks"; version="1.2"; sha256="1z6jghcmw0lwv17ms7gdp5zzimaawq3ahbwkxa4062g373592smd"; depends=[]; }; bReeze = derive2 { name="bReeze"; version="0.4-0"; sha256="1znhmb2inbfv574adhwjwk3qf9kikrxrly4n6sfyim1z6sagnj0z"; depends=[]; }; - bWGR = derive2 { name="bWGR"; version="1.3.1"; sha256="0bfxizypi3nnkv2ycvlvsly9zhf0yyln2x10ayhgxgcj1abmg57y"; depends=[Rcpp]; }; + bWGR = derive2 { name="bWGR"; version="1.3.2"; sha256="0c0fj8w6gzkcbpfw68hvdp3ihjdwpnplqgnxnj7zp5cxac996vs8"; depends=[Rcpp]; }; babar = derive2 { name="babar"; version="1.0"; sha256="13j5klrcnd4dwrgdbxlvwcj56l9mzi4j9ga6jj5i04pgdc6vsfx5"; depends=[]; }; - babel = derive2 { name="babel"; version="0.2-6"; sha256="1dsxjnhr0cky7wlzz8pr8rn3cldfcyrh8v6gn2ba4abr0df7i4dd"; depends=[edgeR]; }; + babel = derive2 { name="babel"; version="0.3-0"; sha256="1iwvx69051yhlxbcl6bypvc3mcih0q8bf3i29r3i79356hp12xqa"; depends=[edgeR]; }; babynames = derive2 { name="babynames"; version="0.2.1"; sha256="1knzr0pn77k8krinp8pmlzf07v8597g2iby4mayig91cna1m0psx"; depends=[]; }; - backShift = derive2 { name="backShift"; version="0.1.3"; sha256="0l4i3z7iwacr64g8n4gwjncxgmkcf5jz2w9l2xy3l90wlnfd15rp"; depends=[clue ggplot2 igraph jointDiag matrixcalc pcalg reshape2]; }; - backpipe = derive2 { name="backpipe"; version="0.1.5"; sha256="0syna8mpv4cxx7q4yii14qvnn60mx8nvyjnq81h4ffpavjg6wi6c"; depends=[]; }; - backports = derive2 { name="backports"; version="1.0.2"; sha256="136nyq06f4pincn85xqgqrf6lkhlqx0gynk4bz6d40va85iswwpp"; depends=[stringi]; }; + backShift = derive2 { name="backShift"; version="0.1.4.1"; sha256="1vixr9l9zqaqy0knahijp6y9vzix4m8bz3abiprk3v2pjzg5nrvm"; depends=[clue ggplot2 igraph jointDiag MASS matrixcalc mvnmle reshape2]; }; + backblazer = derive2 { name="backblazer"; version="0.1.0"; sha256="020kdydksm0brnxsa00blf5sylxd4hz49wmngk1x1fx43kdlyc41"; depends=[httr jsonlite openssl]; }; + backpipe = derive2 { name="backpipe"; version="0.1.8.1"; sha256="1nid5rbgwiq8axkrl2gwl4vr5bjq5k5nrhq7macddvijcn3r2dz8"; depends=[]; }; + backports = derive2 { name="backports"; version="1.0.5"; sha256="1pn1ii8vbkgxcqvx52kzsbwf9gkn9fp33388087zky2hmdzdirn0"; depends=[]; }; backtest = derive2 { name="backtest"; version="0.3-4"; sha256="1s0mf247dz2vvyf4m3sp9xiqhv7xcs4rphyg9gdcy73060sah2ad"; depends=[lattice]; }; backtestGraphics = derive2 { name="backtestGraphics"; version="0.1.6"; sha256="14l9dbkbcx4kl45kpjbq4ihzf47j859khhd1db40vnp8x57g9xcx"; depends=[dplyr dygraphs scales shiny xts]; }; - bacr = derive2 { name="bacr"; version="1.0"; sha256="1as9vfzwv8aix44mr0j3av0ghnqmmbcs6w0jpwbjrvxkb7bhxgdm"; depends=[MCMCpack]; }; + bacr = derive2 { name="bacr"; version="1.0.1"; sha256="14zr1v4rihx0ra3x0vsb81vsz0g8gzskkdxkg7nhiz835hp2fiy8"; depends=[MCMCpack]; }; + badgecreatr = derive2 { name="badgecreatr"; version="0.1.0"; sha256="070zb5jw817s9ykqc3dvzjqk48612gydkdc31svc0ji01s1y1545"; depends=[stringr]; }; bagRboostR = derive2 { name="bagRboostR"; version="0.0.2"; sha256="1k9w98p3ad3myzyqhcrc4rsn7196qvhnmk5ddx3fpd1rdvy2dnby"; depends=[randomForest]; }; - bamdit = derive2 { name="bamdit"; version="2.0.1"; sha256="105y4cayymqhd3f7dk297syv966pba9cjg6dx9jabcximicdw4l9"; depends=[ggplot2 gridExtra R2jags rjags]; }; + baitmet = derive2 { name="baitmet"; version="1.0.0"; sha256="0qrg3a5h5c0w8awnpnn1bfvgqqm4bylkwgjwq3l58xkfji6l0d08"; depends=[erah HiClimR osd Rcpp signal XML]; }; + bamdit = derive2 { name="bamdit"; version="3.0.0"; sha256="0hph6z3id4japk9ljgmn9ygbbswlj50viqllww4qsi2a5wxjls3f"; depends=[ggExtra ggplot2 gridExtra MASS R2jags rjags]; }; + bamlss = derive2 { name="bamlss"; version="0.1-1"; sha256="1r34qgy0w0hx2q9bfc7bxzyjgnqn3wfb0r0ij3rkvdi5rzcrsw7z"; depends=[coda colorspace Formula Matrix MBA mgcv mvtnorm sp spam survival]; }; bandit = derive2 { name="bandit"; version="0.5.0"; sha256="03mv4vbn9g4mqikd9map33gmw2fl9xvb62p7gpxs1240w5r4w3fp"; depends=[boot gam]; }; - bapred = derive2 { name="bapred"; version="0.3"; sha256="0jfg5cz8ra289z5mym621231cm43472gkiss7j66dbm3i4n94ygj"; depends=[FNN fuzzyRankTests glmnet lme4 MASS mnormt sva]; }; + bannerCommenter = derive2 { name="bannerCommenter"; version="0.1.0"; sha256="0ycx771g9a73w0sx8zzix8kswwbjagzhbyvaq7l5r8a9ayfli8ic"; depends=[]; }; + banxicoR = derive2 { name="banxicoR"; version="0.9.0"; sha256="0vchm2hnqm45fhn8k38rcam4vkazmifcl40390s2r04bgvqr0pnl"; depends=[rvest stringr xml2]; }; + bapred = derive2 { name="bapred"; version="1.0"; sha256="08kvc4cc984jv08ikwbja8zxidrcdiwi5w88hlqakbm8yc6hzssa"; depends=[affy affyPLM Biobase FNN fuzzyRankTests glmnet lme4 MASS mnormt sva]; }; barcode = derive2 { name="barcode"; version="1.1"; sha256="14zh714cwgq80zspvhw88cs5b82gvz4b6yfbshj9b7x0y2961nxd"; depends=[lattice]; }; - bartMachine = derive2 { name="bartMachine"; version="1.2.1"; sha256="0r6gr608y0xb14nlq1smwny79hnij4dmi4jsqxvsf97v3nzbgd4r"; depends=[bartMachineJARs car missForest randomForest rJava]; }; + bartMachine = derive2 { name="bartMachine"; version="1.2.3"; sha256="15bv7q64ifjdg5ppx7vp3i3agil6dwirk5cf02lc243hmlg5lk1i"; depends=[bartMachineJARs car missForest randomForest rJava]; }; bartMachineJARs = derive2 { name="bartMachineJARs"; version="1.0"; sha256="1vnicq9amayxh69jqgly8jm7hvgjr22kvm1g6y2n7vphz70p9cq9"; depends=[rJava]; }; - base64 = derive2 { name="base64"; version="1.1"; sha256="1wn3zj1qlgybzid4nr6hvlyqg1rp2dwfh88vxrfby2fy2ba1nl5x"; depends=[]; }; + base64 = derive2 { name="base64"; version="2.0"; sha256="1labh0ycdm2xcjssj8bhnyjvbk44mcdsi0rb2p8rfqa428mrq9cf"; depends=[openssl]; }; base64enc = derive2 { name="base64enc"; version="0.1-3"; sha256="13b89fhg1nx7zds82a0biz847ixphg9byf5zl2cw9kab6s56v1bd"; depends=[]; }; - basefun = derive2 { name="basefun"; version="0.0-30"; sha256="149s2giv1nj2l85lxzalah0c7h441v2kngjv2mj13fl1k8nbxgfl"; depends=[Matrix orthopolynom polynom variables]; }; + base64url = derive2 { name="base64url"; version="1.1"; sha256="1f0asnf5ri55q6mhjkv7lfhr2hncs65vrykmr80r5sxsha6bqndz"; depends=[backports]; }; + basefun = derive2 { name="basefun"; version="0.0-35"; sha256="12sakwz9g3w0w4di2i0l12nk5lmdniqhiq2nvmzbdy3vs4n06m3i"; depends=[Matrix orthopolynom polynom variables]; }; baseline = derive2 { name="baseline"; version="1.2-1"; sha256="1vk0vf8p080ainhv09fjwfspqckr0123qlzb9dadqk2601bsivgy"; depends=[SparseM]; }; - basicspace = derive2 { name="basicspace"; version="0.17"; sha256="1aq2w3lk3ksb60x21cgwayf151nhfcwbcxskbxlgdzs3i2r00b48"; depends=[]; }; + basicspace = derive2 { name="basicspace"; version="0.18"; sha256="1jnylqaxgmdj9ld9q7hkmi4af8yzswaqgykbw96qzzxp9cvini1y"; depends=[]; }; + bastah = derive2 { name="bastah"; version="1.0.7"; sha256="08xdba16wj0inp0kq2sbcrdr6wj8bwlq7rqnfrzjrz03wxhc5bk0"; depends=[BigQuic foreach glmnet lars MASS Matrix scalreg]; }; batade = derive2 { name="batade"; version="0.1"; sha256="1lr0j20iydh15l6gbn471vzbwh29n58dlpv9bcx1mnsqqnsgpmal"; depends=[hwriter]; }; batch = derive2 { name="batch"; version="1.1-4"; sha256="03v8a1hsjs6nfgmhdsv6fhy3af2vahc67wsk71wrvdxwslmn669q"; depends=[]; }; - batchmeans = derive2 { name="batchmeans"; version="1.0-2"; sha256="126q7gyb1namhb56pi0rv9hchlghjr95pflmmpwhblqfq27djss2"; depends=[]; }; + batchmeans = derive2 { name="batchmeans"; version="1.0-3"; sha256="1qkdljngvlahk0pbrkarkjh2g4sxxwiva9f3m5y8gz8pjw9fpy9n"; depends=[]; }; + batchtools = derive2 { name="batchtools"; version="0.9.2"; sha256="0hi2bxfx2gvsr1vssydi39595kxwb0qwk8w9xvwbhc7n92gc9bwf"; depends=[backports base64url brew checkmate data_table digest progress R6 rappdirs stringi]; }; batman = derive2 { name="batman"; version="0.1.0"; sha256="0ccgx506p4iri23k2ikb8jmh04dp08w66785bv52iy8kd359h43f"; depends=[Rcpp]; }; batteryreduction = derive2 { name="batteryreduction"; version="0.1.1"; sha256="0j838q7063bplkzd50kmnxji80cgysfsq7m1qifv8z7a2zsh8c8g"; depends=[pracma]; }; + bayesAB = derive2 { name="bayesAB"; version="0.7.0"; sha256="1visjwxf7jc9z1m99dnplg01sbbx4w4cr6ykh3n1nzh5r9xinimm"; depends=[devtools ggplot2 plumber Rcpp reshape2]; }; bayesDccGarch = derive2 { name="bayesDccGarch"; version="2.0"; sha256="1s2b8f43wi9ja966n2p2r4l4s79vk6xb8mqaxsagnw90g969p681"; depends=[coda numDeriv]; }; - bayesDem = derive2 { name="bayesDem"; version="2.5-0"; sha256="0iz4cysiqkyia61mslgbiczsqxlmdism3vkwihm50xly5g1fvhhk"; depends=[bayesLife bayesPop bayesTFR gWidgets gWidgetsRGtk2 RGtk2 wpp2015]; }; - bayesGARCH = derive2 { name="bayesGARCH"; version="2.0.2"; sha256="1fl1sdila3b7a6ikmay1bxyx6am2mqa9nvf29b9r38002dj5ylz2"; depends=[coda mvtnorm]; }; - bayesLife = derive2 { name="bayesLife"; version="3.0-0"; sha256="0ssmg5yrwyx53lj8iicpnrngpn8gjdxd47xvndb110k7cqzkfyf0"; depends=[bayesTFR car coda hett wpp2015]; }; + bayesDem = derive2 { name="bayesDem"; version="2.5-1"; sha256="1cxrqil1p692mbzkcj1fvsx335qyy6c1y43mq48s4shs1hhc69bn"; depends=[bayesLife bayesPop bayesTFR gWidgets gWidgetsRGtk2 RGtk2 wpp2015]; }; + bayesGARCH = derive2 { name="bayesGARCH"; version="2.1.3"; sha256="1480mmzfshchfbfh3x420cq5qblfh59jkl21hkq2jvnwppksdn9w"; depends=[coda mvtnorm]; }; + bayesGDS = derive2 { name="bayesGDS"; version="0.6.2"; sha256="0ash16hmassn76x3f59dfvp4plqp8vb17qzcwmag7vi3mi3y2ap6"; depends=[Matrix]; }; + bayesImageS = derive2 { name="bayesImageS"; version="0.3-3"; sha256="08d7ffv1nr1q7syf8fxp40fczyl5i8xd2cyv3piqn40l7dlpckhj"; depends=[Rcpp RcppArmadillo]; }; + bayesLife = derive2 { name="bayesLife"; version="3.0-4"; sha256="1n15df1rsyad3ij7l6ib79q7yflgwaykxq8msbkaq4ly8fvyy72x"; depends=[bayesTFR car coda hett wpp2015]; }; bayesMCClust = derive2 { name="bayesMCClust"; version="1.0"; sha256="14cyvcyx3nmkbvsy7n4xjp7zvcgdhy013dv9d72y8j5dvlv82pb4"; depends=[bayesm boa e1071 gplots gtools MASS mnormt xtable]; }; - bayesPop = derive2 { name="bayesPop"; version="6.0-1"; sha256="0wkvvh7ad484cil736rg54ikcg9gdmpprz5y3ai91jjs7ri4mklw"; depends=[abind bayesLife bayesTFR fields googleVis plyr rworldmap wpp2012 wpp2015]; }; - bayesQR = derive2 { name="bayesQR"; version="2.2"; sha256="0w5fg7hdwpgs2dg4vzcdsm60wkxgjxhcssw9jzig5qgdjdkm07nm"; depends=[]; }; + bayesPop = derive2 { name="bayesPop"; version="6.0-4"; sha256="16i9h7zvym1mj1al3wzima3y4igxhwax03npgnypaxahi1sbiwha"; depends=[abind bayesLife bayesTFR fields googleVis plyr rworldmap wpp2012 wpp2015]; }; + bayesQR = derive2 { name="bayesQR"; version="2.3"; sha256="1c6y7r9h9626ghp68pl5k1g0l95fwd6dp0jfznmhy53qza0ny8z4"; depends=[]; }; bayesSurv = derive2 { name="bayesSurv"; version="2.6"; sha256="0lam6w0niy30wgzbc3zrwbfz291whig20prjzdpcpv91syrnw687"; depends=[coda smoothSurv survival]; }; - bayesTFR = derive2 { name="bayesTFR"; version="5.0-1"; sha256="0zpjf2r48z9jsp97jml26ax57pc1mbbs2bvsih0b8j384npb95q8"; depends=[coda MASS mvtnorm wpp2015]; }; - bayesboot = derive2 { name="bayesboot"; version="0.2.0"; sha256="0l2wlj8sar1p404ikrq5z4738757cwiq7l2rj8dvxir33v0gil0q"; depends=[HDInterval plyr]; }; + bayesTFR = derive2 { name="bayesTFR"; version="5.0-5"; sha256="091yzazvj66g6l9997qgnybbhvidfd9gr1wj15b7r3ji0cigywkm"; depends=[coda MASS mvtnorm wpp2015]; }; + bayesbio = derive2 { name="bayesbio"; version="1.0.0"; sha256="08qa4lzkrcwin7n3kzfqfdlnlqahdmjl1lxpdh29n780cgyjfvs0"; depends=[]; }; + bayesboot = derive2 { name="bayesboot"; version="0.2.1"; sha256="0gd3in9z8kx3d29dvyd8blmhlc7wxxl5b2hxnrrq0w13jcnsn57w"; depends=[HDInterval plyr]; }; bayescount = derive2 { name="bayescount"; version="0.9.99-5"; sha256="0c2b54768wn72mk297va3k244256xlsis9cd6zn6q5n1l7ispj6j"; depends=[coda rjags runjags]; }; + bayesianETAS = derive2 { name="bayesianETAS"; version="1.0.3"; sha256="0nbif0b6lcik2kh948zg5ska5mvkdsfr0dg8ndnfpscm2mp7y1dg"; depends=[]; }; + bayesloglin = derive2 { name="bayesloglin"; version="1.0.1"; sha256="0j2ziahf6mwsz2gvb1azvdzlmszlpqgr5zqcqa68pxgq947sa2cs"; depends=[igraph]; }; bayesm = derive2 { name="bayesm"; version="3.0-2"; sha256="014l14k8fraxjqfch2s6ydgp1mcljvj4cgrznjyz2l35fwj3rcf3"; depends=[Rcpp RcppArmadillo]; }; - bayesmeta = derive2 { name="bayesmeta"; version="1.1"; sha256="15f81n8pnrq1s49gw0bzkc8gawn7m2rj5d24bbxak64jkxclgkd9"; depends=[]; }; + bayesmeta = derive2 { name="bayesmeta"; version="1.4"; sha256="0ks0g7jdr2jqm7nwbm0p34nk8hm9746nldf0kyzgkl7vb29jb9f1"; depends=[forestplot]; }; bayesmix = derive2 { name="bayesmix"; version="0.7-4"; sha256="1qms1nnk2nq3gqr8zf2b9ri4wv8jrxv5i8s087k1rwdvya3k5r9a"; depends=[coda rjags]; }; + bayesplot = derive2 { name="bayesplot"; version="1.1.0"; sha256="0c71ma6v6b44j39x7z44wyashnpd8xdwj3hrvvjafx473pgmbx4s"; depends=[dplyr ggplot2 reshape2]; }; bayespref = derive2 { name="bayespref"; version="1.0"; sha256="0gwlzs7qkgmf90np7xv85d27jjqggyhfj00vpya664a2znyjb3jm"; depends=[coda lattice MASS MCMCpack RColorBrewer]; }; + bayesreg = derive2 { name="bayesreg"; version="1.0"; sha256="0crld04cxxqw0xq2d4rdv040iq7vchwjbzacj0z8jv245hwgr9qy"; depends=[BayesLogit]; }; bayess = derive2 { name="bayess"; version="1.4"; sha256="0axipk5hn2hw3g4dfh7y3xa0dxqmi8kqpbr77nl14y7ydpija6xm"; depends=[combinat gplots MASS mnormt]; }; bayou = derive2 { name="bayou"; version="1.1.0"; sha256="1ndd7lygphngvn4a432616f6anmhxbdzmkksrhpl76xvrw5agwkc"; depends=[ape coda denstrip fitdistrplus foreach geiger MASS mnormt phytools Rcpp RcppArmadillo]; }; + bazar = derive2 { name="bazar"; version="0.1.4"; sha256="1dmxii9y61hpi7vpdm7vqdrc9lcsdazi3634k9yrdjcf6xzh4byd"; depends=[kimisc]; }; bbefkr = derive2 { name="bbefkr"; version="4.2"; sha256="1wjx652w3p41sq71a2zdzmb7frjxm6xvcgrc2ark2spwb0lbjjw6"; depends=[]; }; bbemkr = derive2 { name="bbemkr"; version="2.0"; sha256="015c57s8mpimm82nddnh382wlkisxgdmc2hvp7k38pcnqxc5gb5q"; depends=[MASS]; }; bbmle = derive2 { name="bbmle"; version="1.0.18"; sha256="0gcj16msny7ni60r000mv2knb4gxbb470qn16pc6vzdhrl6c6dxj"; depends=[lattice MASS numDeriv]; }; bbo = derive2 { name="bbo"; version="0.2"; sha256="19xrbla3bb3csg3gjjrpkgyr379zfwyh293bcrcd6j8rnm6g4i01"; depends=[]; }; - bc3net = derive2 { name="bc3net"; version="1.0.3"; sha256="0plzi5ncm3izw4k97rlyrvbnhc5zcd8mv2ldp3wy9zav0x168jda"; depends=[c3net igraph infotheo lattice Matrix]; }; - bcRep = derive2 { name="bcRep"; version="1.3.2"; sha256="0n6pcmmzrl2mv2iw2n7hc32ms6b4gwniwgpmwf4kb92bgi0yjbk4"; depends=[ape doParallel foreach gplots ineq plotrix proxy stringdist vegan]; }; + bc3net = derive2 { name="bc3net"; version="1.0.4"; sha256="15dghd0v1s71h77iw8b49v5h7wcda5mb4540lfyibsdipbashv2h"; depends=[c3net igraph infotheo lattice Matrix]; }; + bcROCsurface = derive2 { name="bcROCsurface"; version="1.0-1"; sha256="0gikx66lwirvh037za1ipwvw6kj7n8r31zdsbsasrvksg4r3k58m"; depends=[boot nnet Rcpp RcppArmadillo rgl]; }; + bcRep = derive2 { name="bcRep"; version="1.3.6"; sha256="1fibx11ykkkjv4sgg6zc2a0g270384z2cf68hwghnld0wi002b5z"; depends=[ape doParallel foreach gplots ineq plotrix proxy stringdist vegan]; }; bclust = derive2 { name="bclust"; version="1.5"; sha256="01kx02azj26b6swly53zhf3sny6c6jglkxnzylsc0pvri89x7yj2"; depends=[]; }; bcp = derive2 { name="bcp"; version="4.0.0"; sha256="1bkd7812jacyk955l71b2szpc9550p0hpv3x337qgl09zck4vdgm"; depends=[Rcpp RcppArmadillo]; }; bcpa = derive2 { name="bcpa"; version="1.1"; sha256="0rwbd39szp0ar9nli2rswhjiwil31zgl7lnwm9phd0qjv8q0ppar"; depends=[plyr Rcpp]; }; @@ -3033,144 +3722,185 @@ in with self; { bcv = derive2 { name="bcv"; version="1.0.1"; sha256="0yqcfariw9sw0b8cpljcr7vf5rf0cwr1wbif23icchfaxk2m42gj"; depends=[]; }; bda = derive2 { name="bda"; version="5.1.6"; sha256="0rpxvmjbqiph8hpzsvlj8q6h70jsc9771fiq7l3lmkz69jn1gf4q"; depends=[]; }; bde = derive2 { name="bde"; version="1.0.1"; sha256="1f25gmjfl58x4pns89abfk85yq5aad3bgq9yqpv505g5gxk62d3v"; depends=[ggplot2 shiny]; }; - bdots = derive2 { name="bdots"; version="0.1.7"; sha256="053www3dydrzcakv6yb4ymwqhwzb88hxmgnnazzs19gpwmf7fkfm"; depends=[doParallel doRNG foreach mvtnorm nlme]; }; + bdots = derive2 { name="bdots"; version="0.1.9"; sha256="0nwcwzrh7pdxsyqnhhgd2jb9icgi7y9irlzlpz97f61mrr9n18ry"; depends=[doParallel doRNG foreach mvtnorm nlme]; }; + bdpopt = derive2 { name="bdpopt"; version="1.0-1"; sha256="1z7mdqklw3frsdzyhvx8s8wvblwm28fr1gca2yrivqjng0r47lx4"; depends=[coda rjags]; }; bdpv = derive2 { name="bdpv"; version="1.1"; sha256="0i6wdf27243ch8pn2chqriwxjg3g72wbvzlx52mz4ahw700xjc7n"; depends=[]; }; + bdrift = derive2 { name="bdrift"; version="1.2.2"; sha256="03vwiyvxv174l0sy76gp2x8lwjf3s45zxzwrlbn97hg9c3j9adjm"; depends=[Quandl quantmod scales xts zoo]; }; bdscale = derive2 { name="bdscale"; version="2.0.0"; sha256="1hkkfd69g2bg2y4hicjs6bnw9f0zw74jy0dpadchnzw17lffpms3"; depends=[ggplot2 scales]; }; bdsmatrix = derive2 { name="bdsmatrix"; version="1.3-2"; sha256="16qhfwk0r1snm9hg32qwz7hizkpwc32m723hjm23m2026gvz2nwy"; depends=[]; }; - bdvis = derive2 { name="bdvis"; version="0.1.0"; sha256="1f837i48gmspx9xrnxzsgdbg6ykxmvkp8l20y19yd9iakhv7k3jy"; depends=[ggplot2 maps plotrix plyr sqldf taxize treemap]; }; + bdvis = derive2 { name="bdvis"; version="0.2.9"; sha256="0qgxi9i2vblc219d0gn81mkqnpn9i6c84fczc5lrbcf9a2x0q88g"; depends=[chron ggplot2 lattice leafletR maps plotrix plyr sqldf taxize treemap]; }; bdynsys = derive2 { name="bdynsys"; version="1.3"; sha256="07gfyp0qwq9y1cnh7lhcz7q0b1s51cjwlbpll50l2cza2dszmf29"; depends=[caTools deSolve Formula Hmisc MASS matrixStats plm pracma]; }; + bea_R = derive2 { name="bea.R"; version="1.0.1"; sha256="15ihbw3chmwnlyh68dwdzzzbvzj909jz8d1m4gnmi71s4v5mc1v8"; depends=[chron colorspace data_table DT ggplot2 googleVis gtable htmltools htmlwidgets httpuv httr jsonlite magrittr munsell plyr Rcpp scales shiny shinydashboard stringi stringr xtable yaml]; }; beadarrayFilter = derive2 { name="beadarrayFilter"; version="1.1.0"; sha256="044dq5irc00v2f2gjz0vb69w7q7b84lppc55ganabdv4f0dxdblc"; depends=[beadarray RColorBrewer]; }; beadarrayMSV = derive2 { name="beadarrayMSV"; version="1.1.0"; sha256="0785vmjsli37hjyppk7hlqmn0b683s1apysx9dghbw4h6rgvr8n9"; depends=[Biobase geneplotter limma rggobi]; }; beanplot = derive2 { name="beanplot"; version="1.2"; sha256="0wmkr704fl8kdxkjwmaxw2a2h5dwzfgsgpncnk2p2wd4768jknj9"; depends=[]; }; - bedr = derive2 { name="bedr"; version="1.0.2"; sha256="0sbhzbqmjr9x075dsv0vykfzswkqxy48baaas3n8g251lw9c5fmk"; depends=[data_table R_utils testthat VennDiagram yaml]; }; + beanz = derive2 { name="beanz"; version="1.7.1"; sha256="1x810fwciw5ca9710z8km5ccq4dspz6c7jx0kx800k7w648lnvqq"; depends=[BH Rcpp RcppEigen rstan StanHeaders survival]; }; + bedr = derive2 { name="bedr"; version="1.0.3"; sha256="1v1r5rndpd1wbwcsyzpqwag0dswicdppvs4qq28zr1acgi8cy722"; depends=[data_table R_utils testthat VennDiagram yaml]; }; beepr = derive2 { name="beepr"; version="1.2"; sha256="0w4szy3rgj1bdcanxbcb9agyw38jqp0hc7qsn7j9700vh20zqbln"; depends=[audio stringr]; }; - beeswarm = derive2 { name="beeswarm"; version="0.2.1"; sha256="07fiapl7pl610h3662jx22914mfvdh4rmnmmzhk2adiyyymclnn2"; depends=[]; }; + beeswarm = derive2 { name="beeswarm"; version="0.2.3"; sha256="0hy89bwv7jixlg91li1fywa77916am2whqp1m1fx1khd45g44581"; depends=[]; }; + belex = derive2 { name="belex"; version="0.1.0"; sha256="1563yngc1lvncmx3h6kgsj1r6k3hvxidh6h9rb7apxs2rq5k32ms"; depends=[XML]; }; benchden = derive2 { name="benchden"; version="1.0.5"; sha256="1cwcgcm660k8rc8cpd9sfpzz66r55b4f4hcjc0hznpml35015zla"; depends=[]; }; benchmark = derive2 { name="benchmark"; version="0.3-6"; sha256="05rgrjhbvkdv06nzbh0v57b06vdikrqc1d29wirzficxxbjk1hih"; depends=[ggplot2 plyr proto psychotools relations reshape scales]; }; - benchmarkme = derive2 { name="benchmarkme"; version="0.2.3"; sha256="05ncmgddq83v1ndcyfa30g367a4rv1zvsxh0sn640c6qx2q1q3xy"; depends=[benchmarkmeData httr Matrix]; }; - benchmarkmeData = derive2 { name="benchmarkmeData"; version="0.2.2"; sha256="0b9m9w9948jga0cxrj9mcp6kxvgwnzr316jiyb988a901jmg04wn"; depends=[]; }; - benford_analysis = derive2 { name="benford.analysis"; version="0.1.3"; sha256="0mhi1yf3p9lffl1mcjsjxn3cay1pcjvpgg39cxr9v0nqpkyycfbh"; depends=[data_table]; }; + benchmarkme = derive2 { name="benchmarkme"; version="0.4.0"; sha256="1x17nhpxvz51mllml8mhn9lzx5in1mmfi1f6arqw2xhxd6rkbjdz"; depends=[benchmarkmeData httr Matrix]; }; + benchmarkmeData = derive2 { name="benchmarkmeData"; version="0.4.0"; sha256="06nphyma03pmjynmck9mcnws6sjp32894wv8pvh9xa14ifxqf48f"; depends=[]; }; + benchr = derive2 { name="benchr"; version="0.1.0"; sha256="1a47ambg70hl4jsr6v96z29rm3ipg1psqma792k5l2ws8422gxgw"; depends=[Rcpp]; }; + benford_analysis = derive2 { name="benford.analysis"; version="0.1.4"; sha256="0kz55548f141ic4bvg6wbb0dqrkdnggpdsalf7pra7dj8x67wbhm"; depends=[data_table]; }; bentcableAR = derive2 { name="bentcableAR"; version="0.3.0"; sha256="1gjrlv94av9955jqhicaiqm36rrgmy0avxn9y7wbp2s1sbg7fyg7"; depends=[]; }; ber = derive2 { name="ber"; version="4.0"; sha256="0gl7rms92qpa5ksn8h3ppykmxk5lzbcs13kf2sjiy0r2535n8ydi"; depends=[MASS]; }; - berryFunctions = derive2 { name="berryFunctions"; version="1.9.0"; sha256="0j3nfby1c54y3p66zwb7826z98x2b0isndabfm1ma90y9nbl2p1m"; depends=[]; }; - bestglm = derive2 { name="bestglm"; version="0.34"; sha256="0b6lj91v0vww0fy50sqdn99izkxqbhv83y3zkyrrpvdzwia4dg9w"; depends=[leaps]; }; + berryFunctions = derive2 { name="berryFunctions"; version="1.14.0"; sha256="16332811v3ivddklif5n3mwjp02c2hzysbj4vc6z6v6sxd1jvjq2"; depends=[abind]; }; + bestglm = derive2 { name="bestglm"; version="0.35"; sha256="047gb82hgivgafx5b267gpgq9y11m74rag5j05rprmv9nz43hdqj"; depends=[lattice leaps]; }; betafam = derive2 { name="betafam"; version="1.0"; sha256="1nf5509alqnr5qpva36f1wb7rdnc084p170h91jv89xvzsidqxca"; depends=[]; }; - betalink = derive2 { name="betalink"; version="2.2.0"; sha256="0gqkrrak44ipnl2k4bb6a52c65csgnh4jha00yrh8cclbfsv75wf"; depends=[igraph plyr stringr]; }; - betapart = derive2 { name="betapart"; version="1.3"; sha256="0h2y2c3q6njzh2rlxh8izgkrq9y7abkbb0b13f2iyj9pnalvdv52"; depends=[ape geometry picante rcdd]; }; + betalink = derive2 { name="betalink"; version="2.2.1"; sha256="1wskr8nh1jzcrnc8fn58lscphsvj5z9p1i1pnpfdjn60mdb09rkp"; depends=[igraph plyr stringr]; }; + betapart = derive2 { name="betapart"; version="1.4-1"; sha256="1ldz6hr08vsgvz0h9ilsm5ab5fyppjpnz215lhri80x7biym3c0q"; depends=[ape geometry picante rcdd]; }; betaper = derive2 { name="betaper"; version="1.1-0"; sha256="1gr533iw71n2sq8gga9kzlah7k28cnlwxb2yh562gw6mh1axmidm"; depends=[ellipse vegan]; }; - betareg = derive2 { name="betareg"; version="3.0-5"; sha256="1zpj1x5jvkn7d8jln16vr4xziahng0f54vb4gc4vs03z7c853i4a"; depends=[flexmix Formula lmtest modeltools sandwich]; }; + betareg = derive2 { name="betareg"; version="3.1-0"; sha256="05s5lszj22186xhvk0dxgz4vqfvmss40pbh147mwqkz1h48z5pf7"; depends=[flexmix Formula lmtest modeltools sandwich]; }; betas = derive2 { name="betas"; version="0.1.1"; sha256="1v85r6lrk21viwzam42gi42bgbwh5ibn3dpbh3aqrf3dnn1rdsyd"; depends=[robust]; }; - betategarch = derive2 { name="betategarch"; version="3.2"; sha256="0x3l1zvdp8r7mam7fvdlh1w3dwpjwj86n0ysfk8g824p4mn2wsgv"; depends=[zoo]; }; + betategarch = derive2 { name="betategarch"; version="3.3"; sha256="0hqvyps3lwix2fkzk18wrkhxpqhgardvib9sq1ip8gn8sn1dsi8y"; depends=[zoo]; }; bethel = derive2 { name="bethel"; version="0.2"; sha256="1zlkw672k1c5px47bpa2vk3w2906vkhvifz20h6xm7s51gmm64i0"; depends=[]; }; + beyondWhittle = derive2 { name="beyondWhittle"; version="0.17"; sha256="1lmrsc85v3gjafk2pb013jr5v01jlf7y7csbzck48rmlgv6bqf89"; depends=[ltsa Rcpp]; }; bezier = derive2 { name="bezier"; version="1.1"; sha256="1bhqf1zbshkf1x8mgqp4mkgdxk9jxi51xj6i47kqkyn9gbdzch0c"; depends=[]; }; - bfa = derive2 { name="bfa"; version="0.3.1"; sha256="02vnbm77blllb74kll8w1i91k0llk43vq60aqjwpc5kqmzy652pk"; depends=[coda Rcpp RcppArmadillo]; }; + bfa = derive2 { name="bfa"; version="0.4"; sha256="08n6446xl2w8z0rsqi6v2hp9cp744frxw6vrbxg5cpybhyyfzr36"; depends=[coda Rcpp RcppArmadillo]; }; bfast = derive2 { name="bfast"; version="1.5.7"; sha256="0n75minka55rxpvs3qkj0c65ydn1gc3i8lkr2gdyn1adjkl5yn01"; depends=[forecast raster sp strucchange zoo]; }; bfork = derive2 { name="bfork"; version="0.1.2"; sha256="0gcmvxs57gkyvsx67dyg2jqs9wr3clndmmfqq5rvi5ys31g6krb8"; depends=[]; }; - bfp = derive2 { name="bfp"; version="0.0-30"; sha256="09im14hhykg9a3rfl4pr2af36whpxfh8dvqnsjz88jl0wzw77i3k"; depends=[Rcpp]; }; + bfp = derive2 { name="bfp"; version="0.0-31"; sha256="01b6471a0vwfickj5sl4dak1y4bqysanmzlxs867j7dcsh6nqha7"; depends=[Rcpp]; }; bgeva = derive2 { name="bgeva"; version="0.3"; sha256="0isijl43kmg4x7mdnvz0lrxr87f68dl4jx7gmlg70m8r6kk8cfqn"; depends=[magic mgcv trust]; }; bglm = derive2 { name="bglm"; version="1.0"; sha256="1ln5clsfhpzjkm6cjil0lfqg687b0xxbvw1hcvangc0c0s314mrz"; depends=[mvtnorm]; }; + bgmfiles = derive2 { name="bgmfiles"; version="0.0.6"; sha256="10qldfjjq5fx5jrrakdxc8k2pf0vp8ifg18nq56lvx9n28mqigim"; depends=[]; }; bgmm = derive2 { name="bgmm"; version="1.7"; sha256="00bjwmgqvz053yczvllf1nxy1g88fgwrrzhnw309f2yjr1qvjbgg"; depends=[car combinat lattice mvtnorm]; }; + bgsmtr = derive2 { name="bgsmtr"; version="0.1"; sha256="09h118msqf9yl2z7d6dsvgn4vrvy43ynznajj58k7gkxdlm1nimg"; depends=[coda EDISON Matrix mnormt mvtnorm sparseMVN statmod]; }; + bhm = derive2 { name="bhm"; version="1.1"; sha256="00xnqppq95qvdbiklsz4af4f0f4p61b7c7v0l1k1isxqr3mgcgia"; depends=[coda survival]; }; biasbetareg = derive2 { name="biasbetareg"; version="1.0"; sha256="1562zdin0y5mrp36ih11ir3h9cv49cx1l98chxd89fkj8x3c1fbg"; depends=[betareg]; }; + bib2df = derive2 { name="bib2df"; version="0.1.1"; sha256="0jhl1cbd04dgr9y9qw3s1wa6cnzvgid3668kv0mmn721i30hk5q3"; depends=[dplyr plyr stringr]; }; + bibliometrix = derive2 { name="bibliometrix"; version="1.4"; sha256="14p5rss6maqy4d63w537lnslgdadvybg5vkscj38db16vqasvhcf"; depends=[dplyr factoextra FactoMineR ggplot2 igraph Matrix SnowballC stringr]; }; + bibliospec = derive2 { name="bibliospec"; version="0.0.4"; sha256="0abrbaw2knnlh8g5r4c2i6cc7a6ilfxry8zhscrx0x58irmp790b"; depends=[DBI RSQLite]; }; bibtex = derive2 { name="bibtex"; version="0.4.0"; sha256="0sy1czwjff3kdfnmlkp036qlnw8dzdl5al7izy1cc0535hsijv0d"; depends=[]; }; biclust = derive2 { name="biclust"; version="1.2.0"; sha256="03vkj7zp3dl4zbv2gzv9pahcd1018lbv4ixghvv1g0fsbndrybdg"; depends=[colorspace flexclust lattice MASS]; }; bifactorial = derive2 { name="bifactorial"; version="1.4.7"; sha256="187zlsqph7m63wf6wajvs6a4a08aax9hiqssgvma6cpkpisfiz4k"; depends=[lattice multcomp mvtnorm Rcpp]; }; + bife = derive2 { name="bife"; version="0.1"; sha256="09pv4xll609y4nfgalssyfgqd8c74zc75bbyq4d8h94yyhw1d8d0"; depends=[Formula Rcpp RcppArmadillo]; }; + bigFastlm = derive2 { name="bigFastlm"; version="0.0.1"; sha256="00i5hq3i837hj5kszm9rqax86g273aklxwikrabzwnyai9ziz8qa"; depends=[BH bigmemory Rcpp RcppEigen]; }; bigGP = derive2 { name="bigGP"; version="0.1-6"; sha256="0fwm06rzx1qbh16ii93x26i4v4yb50jk67k3qmzyr3gr4z9b9xhg"; depends=[Rmpi]; }; + bigQueryR = derive2 { name="bigQueryR"; version="0.2.0"; sha256="1z9a725jd9nparid0df7fyvsa5mvz92krj0q7mq75x6cprr44f29"; depends=[googleAuthR googleCloudStorageR]; }; bigRR = derive2 { name="bigRR"; version="1.3-10"; sha256="08m77r9br6wb9i21smaj4pwwpq3nxdirs542gnkrpakl7bvyp6s3"; depends=[DatABEL hglm]; }; + bigReg = derive2 { name="bigReg"; version="0.1.2"; sha256="1hmvh5j40zpzz6c88hmikphps8rb741yvkg60dxmkfl8gxqsrp3w"; depends=[MASS Rcpp RcppArmadillo uuid]; }; bigalgebra = derive2 { name="bigalgebra"; version="0.8.4"; sha256="19rv552ac0q9djc1yvpldkc0lipdf6q143m9dnndpsqs7ayqlr4g"; depends=[BH bigmemory]; }; biganalytics = derive2 { name="biganalytics"; version="1.1.14"; sha256="1hsqdg5hkhs6z9pwvn055q02hzpksjwrf33q5zdnkm387g188ca6"; depends=[BH biglm bigmemory foreach Rcpp]; }; bigdata = derive2 { name="bigdata"; version="0.1"; sha256="1n1zcjhvb2s87d7fkcm95x11ss4b8pczza0n55gxjv4przfiq0in"; depends=[glmnet lattice Matrix]; }; biglars = derive2 { name="biglars"; version="1.0.2"; sha256="17zs25dvlja9ynx2fm5f4nmgkx4mnyqs5iscwsyahr6qigx1rz9x"; depends=[ff]; }; - biglasso = derive2 { name="biglasso"; version="1.0-1"; sha256="09yahcklcnrf03rsr2j01gh4n3mlnzjsvv13nlhg48r88r6wizmy"; depends=[BH bigmemory Matrix ncvreg Rcpp RcppArmadillo]; }; + biglasso = derive2 { name="biglasso"; version="1.3-3"; sha256="1mv9zildvkq8a5rvhr8hr1d7v3zn58j5bjc17wz75mqk0dsfwdjs"; depends=[BH bigmemory Matrix ncvreg Rcpp RcppArmadillo]; }; biglm = derive2 { name="biglm"; version="0.9-1"; sha256="1z7h4by457z93k5i6qf5rq7xmd1y2kcd1rq4pv465cd32d4mb2g1"; depends=[DBI]; }; - bigmemory = derive2 { name="bigmemory"; version="4.5.18"; sha256="1yl4izrq00pcsnzji4qx2yfrfk15iwf0v4r8rdm62lbaj0vx3haf"; depends=[BH bigmemory_sri Rcpp]; }; + bigmemory = derive2 { name="bigmemory"; version="4.5.19"; sha256="191gbzca557kpk7mdsg716vfyqpr7j5din6qb8hin4g1nkzzwmg6"; depends=[BH bigmemory_sri Rcpp]; }; bigmemory_sri = derive2 { name="bigmemory.sri"; version="0.1.3"; sha256="0mg14ilwdkd64q2ri9jdwnk7mp55dqim7xfifrs65sdsv1934h2m"; depends=[]; }; bigml = derive2 { name="bigml"; version="0.1.2"; sha256="0vl5krjbgckknxwl26b2hn63jhb80zbn7abpckhxzxfxzncpnfz9"; depends=[plyr RCurl RJSONIO]; }; bigpca = derive2 { name="bigpca"; version="1.0.3"; sha256="0hqkaamj5fyp2jw5727pkvmnqr194ngh4hlja14qmj81nr26a88p"; depends=[biganalytics bigmemory bigmemory_sri irlba NCmisc reader]; }; - bigrquery = derive2 { name="bigrquery"; version="0.2.0"; sha256="15hwi4n574j03nh2brr6qyfigkg25mj4pq4fm0igyg45cm3ixdw8"; depends=[assertthat dplyr httr jsonlite R6]; }; - bigsplines = derive2 { name="bigsplines"; version="1.0-8"; sha256="00w8jv5nlkm12djry69w11dzpg85x4ygriq9g9d3x0saisii5x12"; depends=[]; }; + bigrquery = derive2 { name="bigrquery"; version="0.3.0"; sha256="0g13fqs0x5v7nzqd0iyajw4dw9arykm3zn0wvnk0lb7c9izkk9lr"; depends=[assertthat DBI dplyr httr jsonlite R6]; }; + bigsplines = derive2 { name="bigsplines"; version="1.1-0"; sha256="0jjlv9qidn8xrz630wbyq7kz7vlxgaphv2y2siv90j01j5nj4s89"; depends=[quadprog]; }; + bigstep = derive2 { name="bigstep"; version="0.7.1"; sha256="1x8bx0n9nplb6h54nf1s18qv2zgy79ykass08qin6l1d65qvpfwc"; depends=[bigmemory R_utils RcppEigen speedglm]; }; bigtabulate = derive2 { name="bigtabulate"; version="1.1.5"; sha256="1jvp3m0ms2cav9z8vvhh80gsa0kvc351brv2jq99rxv1mwvpa4xj"; depends=[BH biganalytics bigmemory Rcpp]; }; + bigtcr = derive2 { name="bigtcr"; version="1.0"; sha256="1wh85r6f4jd8xzinczr5g1p1acbcyn4am3v1n4blfbn447l9nx4z"; depends=[]; }; + bikeshare14 = derive2 { name="bikeshare14"; version="0.1.0"; sha256="12399c01s8p9rmpi3fpy4rm7xxnsf627slz3h234frbahhs882c4"; depends=[]; }; bild = derive2 { name="bild"; version="1.1-5"; sha256="03has1zi57inicahl52ja006vv5cdndyxfsxp77l6nc3zc6ixna8"; depends=[]; }; bimetallic = derive2 { name="bimetallic"; version="1.0"; sha256="181qi4dr0zc7x6wziq7jdc1his20jmprfpq3hrfm56fr5n1sj8wl"; depends=[]; }; bimixt = derive2 { name="bimixt"; version="1.0"; sha256="0nhszpzjqy8z3vngl5jdzqxzshnn92wgi0ci5n3n5kzi24xkfrzc"; depends=[pROC]; }; binGroup = derive2 { name="binGroup"; version="1.1-0"; sha256="1sf7prg2x1ryynf1kz7jr50svmga7kjgd5pi9qm3g2hyimz8mvs4"; depends=[]; }; binMto = derive2 { name="binMto"; version="0.0-6"; sha256="1h9s42wk848x15f4glhsh2iikpra64miwlia6xz5dqlzbs4vw86k"; depends=[mvtnorm]; }; - binaryLogic = derive2 { name="binaryLogic"; version="0.3.2"; sha256="04ghil0h560zm2q4rndyxsxgp9jzh6xx3apx2m8y84p4c9h2q695"; depends=[]; }; + binaryLogic = derive2 { name="binaryLogic"; version="0.3.5"; sha256="1zaqwkrr1dyxsbfa3zvz1ciipmqddl932jkw9r00qmnhdh3ybpa6"; depends=[]; }; binda = derive2 { name="binda"; version="1.0.3"; sha256="15rhxnlif7agblzd09gyllkqkf5d8cc75b4vmp7grx8a6y7w47g0"; depends=[entropy]; }; bindata = derive2 { name="bindata"; version="0.9-19"; sha256="15ya21fz1kvq4qsppkn9ypiqvaq8q4vszdcgcymampa7zc07z2ld"; depends=[e1071 mvtnorm]; }; - binequality = derive2 { name="binequality"; version="0.6.1"; sha256="18pcz5b65zk6fwh597pcbpyy0j7gkxp5swwadxvsa3cainvyd07n"; depends=[gamlss gamlss_cens gamlss_dist ineq survival]; }; + bindr = derive2 { name="bindr"; version="0.1"; sha256="0d95ifm0x4mrfzi20xf39f5pzd7rfzqsld0vjqf6xzga5rhnd8fc"; depends=[]; }; + bindrcpp = derive2 { name="bindrcpp"; version="0.1"; sha256="0djmmvkkf9z291r1h41g542v81qccqqh50xdn5y7za1kaxmh9pj1"; depends=[bindr plogr Rcpp]; }; + binequality = derive2 { name="binequality"; version="1.0.1"; sha256="0an73s9nj96hm83va4p5zfv2sv8vnp1fwjwx4ls5carg8f5pmfv5"; depends=[gamlss gamlss_cens gamlss_dist ineq survival]; }; + binford = derive2 { name="binford"; version="0.1.0"; sha256="04mpdvynlm4gddybys04k0446gc9hyq0vaxr6a525p76ls5aw4b1"; depends=[]; }; bingat = derive2 { name="bingat"; version="1.2.2"; sha256="1vx6zm6vvv7nzp781fa6mb2iq6hmndi5f3yml15ydw4cx3f8r0xd"; depends=[doParallel foreach genalg gplots matrixStats network]; }; binhf = derive2 { name="binhf"; version="1.0-1"; sha256="0l8925bj6mjv2y7fn76zh2g8xjig3kbbdy4jl0ip3gd9kbrakl9k"; depends=[adlift wavethresh]; }; + binman = derive2 { name="binman"; version="0.1.0"; sha256="103f74gm124vw4rwbfrd5dlgca3v83kqd8m5j9z3ma3snh788mkx"; depends=[assertthat httr jsonlite rappdirs semver xml2 yaml]; }; binom = derive2 { name="binom"; version="1.1-1"; sha256="0mjj92dqf5q69jxzqya4izb1mly3mkydbnmlm4wb3zqqg82a324c"; depends=[]; }; - binomSamSize = derive2 { name="binomSamSize"; version="0.1-3"; sha256="0hryaf0y3yjxp84c0k80mhxj8zzlad697bv2yrvcjvllkzdvzbm7"; depends=[binom]; }; + binomSamSize = derive2 { name="binomSamSize"; version="0.1-4"; sha256="0m7g4fagw44l23ancisnp41928pwkr0cwyi1015nbccqbgrw2g3n"; depends=[binom]; }; binomTools = derive2 { name="binomTools"; version="1.0-1"; sha256="14594i7iapd6hy4j36yb88xmrbmczg8zgbs0b6k0adnmqf83bn4v"; depends=[]; }; binomen = derive2 { name="binomen"; version="0.1.0"; sha256="0r89xcbp0jjirr36j3i4xmdjn2wh142c0jv1whzpzjdmcsh806g6"; depends=[dplyr jsonlite lazyeval]; }; binomialcftp = derive2 { name="binomialcftp"; version="1.0"; sha256="00c7ymlxk1xnx3x1814x7bcyir7q5sy4rb82dcpzf2bdly4xa1qr"; depends=[]; }; binomlogit = derive2 { name="binomlogit"; version="1.2"; sha256="1njz1g9sciwa8q6h0zd8iw45vg3i1fwcvicj5y8srpk8wqw3qp7k"; depends=[]; }; binr = derive2 { name="binr"; version="1.1"; sha256="0kgk91zy7bdrhpkh9c5bi206y9hjwjwzb508i8qqmznqyxmza70r"; depends=[]; }; - binseqtest = derive2 { name="binseqtest"; version="1.0.1"; sha256="0snlrwmmmwrl3fj8652rllgays737m020qc3fqv4sfp1vn6aayng"; depends=[clinfun]; }; + binseqtest = derive2 { name="binseqtest"; version="1.0.3"; sha256="0661a2bqmv6bckq23c6m04ggwrp8z10lfgjg9dgkz4bfxsd297gs"; depends=[clinfun]; }; + binsmooth = derive2 { name="binsmooth"; version="0.1.0"; sha256="1zlw4zmkckg7rwf4hx8wyr2yl644xkdkazayysy99saysr9pk2c9"; depends=[ineq pracma triangle]; }; + binst = derive2 { name="binst"; version="0.2.0"; sha256="13hg9kmxlaczbkbimlqphpimzx67kncc6qvnlk9cxqyvfkb0ph47"; depends=[]; }; bio_infer = derive2 { name="bio.infer"; version="1.3-3"; sha256="14pdv6yk0sk6v8g9p6bazbp7mr3wmxgfi6p6dj9n77lhqlvjcgm9"; depends=[]; }; - bio3d = derive2 { name="bio3d"; version="2.2-4"; sha256="0kzbg4rzpbs3qicbg9cfqggm9fzy81waw6b0n1kn2yc9azlqwgvz"; depends=[]; }; + bio3d = derive2 { name="bio3d"; version="2.3-1"; sha256="0dm582jam4ll5q82vfxf1gjrmv1qzl60kws6vmxjx91d5jwf1fqy"; depends=[Rcpp]; }; bioPN = derive2 { name="bioPN"; version="1.2.0"; sha256="0mvqgsfc7d4h6npgg728chyp5jcsf49xhnq8cgjxfzmdayr1fwr8"; depends=[]; }; - biogas = derive2 { name="biogas"; version="1.2.1"; sha256="0prp9s60d133s94n78m2rvlaph98j1xpsw2ykwkp33mq4sgjqbkq"; depends=[]; }; - biogram = derive2 { name="biogram"; version="1.2"; sha256="1kklidp1nm9jb0nvlhlhxklh4fp86plfsslp4ajnv8i4rc6h0v19"; depends=[bit entropy slam]; }; - bioinactivation = derive2 { name="bioinactivation"; version="1.1.2"; sha256="1hcn29nvq9sf3ayc5nlyxiihqacccbqikcxlypxxq5x7kv20ml9a"; depends=[deSolve dplyr FME ggplot2 lazyeval MASS]; }; - biom = derive2 { name="biom"; version="0.3.12"; sha256="18fmzp2zqjk7wm39yjlln7mpw5vw01m5kmivjb26sd6725w7zlaa"; depends=[Matrix plyr RJSONIO]; }; - biomartr = derive2 { name="biomartr"; version="0.0.3"; sha256="15ds9518kanr7ifc6xnswmj28asmqh7qm2nz8ll6ak1c97gwllmg"; depends=[biomaRt Biostrings data_table downloader dplyr httr RCurl readr stringr XML]; }; + biogas = derive2 { name="biogas"; version="1.6.0"; sha256="100593ddrsl82hhpq289vs0gdasrm9fmwf6vhd530rp8k7y07j4a"; depends=[]; }; + biogeo = derive2 { name="biogeo"; version="1.0"; sha256="14sqgg8b06gp5dajxvyj9s3ndsk7jpkfr0mkyl2l61kgp6qx53rh"; depends=[maptools raster sp stringr vegan]; }; + biogram = derive2 { name="biogram"; version="1.4"; sha256="1kkim6dxmvvpby2ir280adl14jmrz7nsib3m8g2ki81d539km6il"; depends=[bit combinat entropy partitions slam]; }; + bioimagetools = derive2 { name="bioimagetools"; version="1.1.0"; sha256="0ws99rx7bhqi448qqy08jsl3c4vbq96gigqb85yv1mzrc82sg62p"; depends=[EBImage httr tiff]; }; + bioinactivation = derive2 { name="bioinactivation"; version="1.1.5"; sha256="0m20947n2kzrfy8a592k1d9fg1xlv83vjf11pp4h5hhxd8fbm0w5"; depends=[deSolve dplyr FME ggplot2 lazyeval MASS]; }; + biomartr = derive2 { name="biomartr"; version="0.3.0"; sha256="15r0dx0pbb2fxgc1ai2f9rg4dd3vly1yxkh4vv698gkf1z0r6cxx"; depends=[biomaRt Biostrings data_table downloader dplyr httr jsonlite RCurl readr stringi stringr tibble XML]; }; biomod2 = derive2 { name="biomod2"; version="3.3-7"; sha256="0mbf6j4m7vvq82l1grmznfqirj1ynr6jzzlpx0s2wjd3hdbvgzia"; depends=[abind dismo earth gbm ggplot2 MASS maxent mda nnet PresenceAbsence pROC randomForest raster rasterVis reshape rpart sp]; }; bionetdata = derive2 { name="bionetdata"; version="1.0.1"; sha256="1l362zxgcvxln47b1vc46ad6ww8ibwhqr2myxnz1dnk2a8nj7r2q"; depends=[]; }; - biorxivr = derive2 { name="biorxivr"; version="0.1.2"; sha256="1715i1wp9ja7ipw3awh9mw5whdnwjygf2m73z4pr2f57wyb11n7f"; depends=[XML]; }; + bioplots = derive2 { name="bioplots"; version="0.0.1"; sha256="184wp1jvgf7a80srrfq72a4r1la2psr8b16kxs00v2gcbgjyvr10"; depends=[ggplot2 gplots RColorBrewer reshape2]; }; + biorxivr = derive2 { name="biorxivr"; version="0.1.3"; sha256="1vi035c4jld5i52xnp79dn5642308cv11vfrw0n62wlsbjfbdma4"; depends=[XML]; }; bios2mds = derive2 { name="bios2mds"; version="1.2.2"; sha256="1avzkbk91b7ifjba5zby5r2yw5mibf2wv05a4nj27gwxfwrr21cd"; depends=[amap cluster e1071 rgl scales]; }; biosignalEMG = derive2 { name="biosignalEMG"; version="2.0.0"; sha256="0avn35r567crp3z4i1fvlfirvc085cf3g6znc6wgnm7mhxp3l1ss"; depends=[signal]; }; + biotic = derive2 { name="biotic"; version="0.1.2"; sha256="1p18jkdd263dgk90626n9awkj6m4zn1n7897596fzrzrahksa978"; depends=[]; }; biotools = derive2 { name="biotools"; version="3.0"; sha256="0k5dgaw2ris9vp370d8qhpnvnd0hllac8cv5sp52vgqskwygg7fx"; depends=[boot lattice MASS rpanel SpatialEpi tkrplot]; }; - bipartite = derive2 { name="bipartite"; version="2.05"; sha256="05w3ypdxy2lfygdlvg9xv88dpsf21i60rsbvvz058zwpfzr39hfh"; depends=[fields igraph MASS permute sna vegan]; }; + bipartite = derive2 { name="bipartite"; version="2.07"; sha256="10gpmcnlnhv55ffff23xsmwbq58r2wvg54wyv1isa0jp4vh0b67x"; depends=[fields igraph MASS permute sna vegan]; }; biplotbootGUI = derive2 { name="biplotbootGUI"; version="1.1"; sha256="0k92z9iavvq5v56x2hgkmrf339xl7ns1pvpqb4ban8r1j8glzawi"; depends=[cluster dendroextras MASS rgl shapes tcltk2 tkrplot]; }; + birdnik = derive2 { name="birdnik"; version="0.1.0"; sha256="1ql29qbv7jw6cngd36qcgljx0zvvzp2v5rjd44v0j04gww1kb2bc"; depends=[httr]; }; birdring = derive2 { name="birdring"; version="1.3"; sha256="1vlivapmgq3kz2zz795c7hcfpibnqcfnxp7m42di37yngqc90q87"; depends=[geosphere ks lazyData raster rgdal rgeos rworldmap rworldxtra sp]; }; - birk = derive2 { name="birk"; version="2.1.0"; sha256="00hzhv209wzgmngaq699f1sr003vwsk9s42s8pkli4qjlwzwqk12"; depends=[]; }; + birk = derive2 { name="birk"; version="2.1.2"; sha256="07ck59m5mw897a60vmdn1b3qrmqj20qpfsn3093haqbpn8z13dmn"; depends=[]; }; bisectr = derive2 { name="bisectr"; version="0.1.0"; sha256="1vjsjshvzj66qqzg32rviklqswrb00jyq6vwrywg1hpqhf4kisv7"; depends=[devtools]; }; bisoreg = derive2 { name="bisoreg"; version="1.4"; sha256="1ianhk5vrzhwb9ymzvlx9701p5c4iasxyq7nhrvm815dm15rf2wf"; depends=[bootstrap coda monreg R2WinBUGS]; }; bit = derive2 { name="bit"; version="1.1-12"; sha256="0a6ig6nnjzq80r2ll4hc74za3xwzbzig6wlyb4dby0knzf3iqa6f"; depends=[]; }; bit64 = derive2 { name="bit64"; version="0.9-5"; sha256="0fz5m3fhvxgwjl76maag7yn0zdw24rx34gy6v77378fajag9yllg"; depends=[bit]; }; bitops = derive2 { name="bitops"; version="1.0-6"; sha256="176nr5wpnkavn5z0yy9f7d47l37ndnn2w3gv854xav8nnybi6wwv"; depends=[]; }; + bitrugs = derive2 { name="bitrugs"; version="0.1"; sha256="0sqgp05b902mdldr4ckz4knmkbsqvgl1vx0l792cn2r437yqlgp3"; depends=[]; }; bivarRIpower = derive2 { name="bivarRIpower"; version="1.2"; sha256="0vgi0476rwali6k8bkp317jawzq5pf04v75xmycpmadb7drnpzy0"; depends=[]; }; - biwavelet = derive2 { name="biwavelet"; version="0.17.10"; sha256="0rvlpqfrgajaw5bifc3103ixj2akdhpcxqhgw9fv0r1c5kv98qz0"; depends=[fields]; }; + bivrp = derive2 { name="bivrp"; version="1.0"; sha256="0q00k24fssvjkgpndg84vdm7w9hswq593k6yjha4pl0a8bmnv6f8"; depends=[MASS]; }; + biwavelet = derive2 { name="biwavelet"; version="0.20.11"; sha256="0fmk4b8gzbq0l4n08zq4pl1csaxxxi3hpqd886ccbhmg6zn8dz01"; depends=[fields foreach Rcpp]; }; biwt = derive2 { name="biwt"; version="1.0"; sha256="1mb3x8ky3x8j4n8d859i7byyjyfzq035i674b2dmdca6mn7paa14"; depends=[MASS rrcov]; }; - bizdays = derive2 { name="bizdays"; version="0.2.2"; sha256="1n2bh7vy0fhxq20s4lnbhgig1012di34kfl61i0ap7pc6464kg8d"; depends=[]; }; - blavaan = derive2 { name="blavaan"; version="0.1-2"; sha256="0g04554s11v2nybawvv635dgf3dajh12h2hlxlccjz5rslg27hb8"; depends=[lavaan loo MASS MCMCpack mnormt nonnest2 runjags]; }; + bizdays = derive2 { name="bizdays"; version="1.0.1"; sha256="1nig6nfxw7vrvq20p49l2b5z8cnjihljivir3lgj99djb5w8i6lk"; depends=[]; }; + bkmr = derive2 { name="bkmr"; version="0.1.0"; sha256="0pw82sd8x82nk5c5c6lr7yqr767nrkgk1rvbpwy5vwdpvwwj5ibl"; depends=[dplyr fields magrittr MASS nlme tidyr truncnorm]; }; + blackbox = derive2 { name="blackbox"; version="1.0.18"; sha256="1sgq6i8p066li9lr3241zplygv7yc7mp7k13c6nih0289v3l7jg7"; depends=[geometry lattice MASS nloptr numDeriv proxy rcdd Rcpp RcppEigen spaMM]; }; + blavaan = derive2 { name="blavaan"; version="0.2-2"; sha256="1jiicy21zhrnk04b74nxs4yp3g0mzcxxb6zn5wks12b1791ykrm6"; depends=[coda lavaan loo MASS MCMCpack mnormt nonnest2 runjags]; }; + blendedLink = derive2 { name="blendedLink"; version="1.0"; sha256="19d1pnjag89jjvkl5a6wx531qjqp4cv5jk95md6jby27yr52r8vp"; depends=[]; }; blender = derive2 { name="blender"; version="0.1.2"; sha256="1qqkfgf7fzwcz88a43cqr8bw86qda33f18dg3rv1k77gpjqr999c"; depends=[vegan]; }; blighty = derive2 { name="blighty"; version="3.1-4"; sha256="1fkz3vfcnciy6rfybddcp5j744dcsdpmf7cln2jky0krag8pjzpn"; depends=[]; }; + blkbox = derive2 { name="blkbox"; version="1.0"; sha256="14bl0b5w46gb7v8p94df5r56nj849r7jqisajagvd1irda3vkc7z"; depends=[bartMachine caret dplyr e1071 ggplot2 glmnet gtools kknn knitr magrittr nnet pamr party plyr pROC randomForest reshape reshape2 rJava rmarkdown shiny shinyjs stringr tibble tidyr xgboost]; }; blkergm = derive2 { name="blkergm"; version="1.1"; sha256="0giknhcl14b4djn5k5v5n33b7bc3f8x6lx2h4jr25kpd89aynhq5"; depends=[ergm network statnet_common]; }; blm = derive2 { name="blm"; version="2013.2.4.4"; sha256="1w6c30cq38j4i1q4hjg12l70mhy5viw886l1lsnxyvniy113in4i"; depends=[]; }; blme = derive2 { name="blme"; version="1.0-4"; sha256="1ca2b0248k0fj3lczn9shfjplz1sl4ay4v6djldizp2ch2vwdgy2"; depends=[lme4]; }; blmeco = derive2 { name="blmeco"; version="1.1"; sha256="1hzg5dimzj1khygm9dv0y30mx1nf9vdhgicqdg1rvj7nf426h2ki"; depends=[arm lme4 MASS MuMIn]; }; - blockTools = derive2 { name="blockTools"; version="0.6-2"; sha256="0h04179ybklwbs69rg73p5h09fi3vzagh845r00ivw4iv18anq40"; depends=[MASS]; }; - blockcluster = derive2 { name="blockcluster"; version="4.0.2"; sha256="0pvsi56v2dm9mz9a2h401z5h07ln5hfrgch2r6jmgnyg26kxa72r"; depends=[Rcpp rtkore]; }; + blob = derive2 { name="blob"; version="1.0.0"; sha256="0zjb3sbx4q36d69p2164im1nvpsdjz5mqa5rmncjziipgz6aix38"; depends=[tibble]; }; + blockTools = derive2 { name="blockTools"; version="0.6-3"; sha256="0023p0msfmp8swq4f5aff40m976np7y051x8hjizzw91hrfa4w2n"; depends=[MASS tibble]; }; + blockcluster = derive2 { name="blockcluster"; version="4.2.1"; sha256="05fy6l0q0q0jmvyfph3wmlkniz4njkrzmhyy14hamzsiwn23cpiw"; depends=[Rcpp rtkore]; }; blockmatrix = derive2 { name="blockmatrix"; version="1.0"; sha256="14k69ly4i8pb8z59005kaf5rpv611kk1mk96q6piyn1gz1s6sk6r"; depends=[]; }; blockmodeling = derive2 { name="blockmodeling"; version="0.1.8"; sha256="0x71w1kysj9x6v6vsirq0nndsf6f3wzkf8pbsq3x68sf4cdji1xl"; depends=[]; }; blockmodels = derive2 { name="blockmodels"; version="1.1.1"; sha256="088629i4g63m8rnqmrv50dgpqbnxd1a4zl5wr3ga0pdpqhmd53wp"; depends=[digest Rcpp RcppArmadillo]; }; blockrand = derive2 { name="blockrand"; version="1.3"; sha256="1090vb26w6s7iqjcal0xbb3qb6p6j46a5w25f1wjdppd1spvh7f9"; depends=[]; }; - blocksdesign = derive2 { name="blocksdesign"; version="2.0"; sha256="0d99dp7wci89gc2iacq830ibvfx0qa90ds9l7h2zwr4knam4brzz"; depends=[crossdes]; }; + blocksdesign = derive2 { name="blocksdesign"; version="2.4"; sha256="0nwcayxrp829599hlz860xkrm49ij1l6anxrf4gsvfgs4rlm380j"; depends=[crossdes]; }; blockseg = derive2 { name="blockseg"; version="0.2"; sha256="183hjb66589qqjwf14rzdmy770biad73r0l5pkh6f4xk9xac1r62"; depends=[ggplot2 Matrix Rcpp RcppArmadillo reshape2]; }; - blsAPI = derive2 { name="blsAPI"; version="0.1.3"; sha256="10jkfrl4xa3vzvh5rk3jdn5ix3hhqgbdg6h0wcijmgqhj8v9gj0j"; depends=[RCurl rjson]; }; + blsAPI = derive2 { name="blsAPI"; version="0.1.7"; sha256="0q04vsmhxz5galdjcqrbabghfn747pi6zdpchj3xavcf6wx8xs5s"; depends=[RCurl rjson]; }; + blscrapeR = derive2 { name="blscrapeR"; version="2.1.2"; sha256="0qyj1fnhb5cb425y3ws1rwpv6sm2bqx9j3gyk3l8m2yn5z6qmjns"; depends=[ggplot2 httr jsonlite magrittr]; }; bmd = derive2 { name="bmd"; version="0.5"; sha256="0d4wxyymycb416sdn272292l70s1h2m5kv568vakx3rbvb8y6agy"; depends=[drc]; }; bmem = derive2 { name="bmem"; version="1.5"; sha256="1miiki743rraralk9dp12dsjjajj3iizcrfwmplf6xas6pl8sfk6"; depends=[Amelia lavaan MASS sem snowfall]; }; bmeta = derive2 { name="bmeta"; version="0.1.2"; sha256="19pm60xpmlanngq4nbibp0n5m98xw24b2xghz92ly31i3mkg2n68"; depends=[forestplot R2jags]; }; + bmixture = derive2 { name="bmixture"; version="0.3"; sha256="1q22wdg3909krdqg0vgkny9lq9l7j0cs99ay68aggqjd9kcgrl4g"; depends=[]; }; bmk = derive2 { name="bmk"; version="1.0"; sha256="1wxkrlrhmsxsiraj8nyiax9bqs834ln2swykmpf40wxspkykgfdq"; depends=[coda functional plyr]; }; + bmlm = derive2 { name="bmlm"; version="1.2.10"; sha256="1kng958v08vv54y3wbvf65rlpq6iwwfnr2gj0j3n05nq3c3qdm9n"; depends=[BH ggplot2 Rcpp RcppEigen rstan StanHeaders]; }; bmmix = derive2 { name="bmmix"; version="0.1-2"; sha256="00php2pgpnm9n0mnamchi6a3dgaa97kdz2ynivrf38s0vca7fqx8"; depends=[ggplot2 reshape2]; }; bmp = derive2 { name="bmp"; version="0.2"; sha256="059ps1sy02b22xs138ba99fkxq92vzgfbyf2z5pyxwzszahgy869"; depends=[]; }; bmrm = derive2 { name="bmrm"; version="3.0"; sha256="0ix5hfsvs2vnca0l1aflynddw6z85cqdyxn0y7xynkkapk182g4p"; depends=[LowRankQP lpSolve]; }; - bnclassify = derive2 { name="bnclassify"; version="0.3.2"; sha256="0nbbna2qr57xvc7paqxaahff0r6gk92hz3gyk8v5kdb3hpcw8ph6"; depends=[assertthat entropy graph matrixStats RBGL rpart]; }; - bnlearn = derive2 { name="bnlearn"; version="3.9"; sha256="19c3qda4lkzasgrjra0y3w8bg3jf9cp4lgaal7p43nlfani8y2xw"; depends=[]; }; + bnlearn = derive2 { name="bnlearn"; version="4.1"; sha256="0ywj94m9jvwci3q1abld2yfpz0h48x4lbfqyqyg43pbzs3p7p6r0"; depends=[]; }; bnnSurvival = derive2 { name="bnnSurvival"; version="0.1.4"; sha256="0rbv8vq7wlzc1mmjqaw9yxjfdgb0cwiwvhwlay24njq16fhidk9w"; depends=[pec prodlim Rcpp]; }; bnormnlr = derive2 { name="bnormnlr"; version="1.0"; sha256="0l2r7vqikak47nr6spdzgjzhvmkr9dc61lfnxybmajvcyy6ymqs9"; depends=[mvtnorm numDeriv]; }; bnpmr = derive2 { name="bnpmr"; version="1.1"; sha256="0hvwkdbs2p2l0iw0425nca614qy3gsqfq4mifipy98yxxvgh8qgc"; depends=[]; }; - bnstruct = derive2 { name="bnstruct"; version="1.0"; sha256="1bc4q5gk56xmmsiglg8434hpl3lvbyg9hgv5xx5b8law6hn5znz4"; depends=[bitops igraph Matrix]; }; - boa = derive2 { name="boa"; version="1.1.8-1"; sha256="15nkr24hgv1286h9b6sdhlpljnm98fi5mmpsygl76h24dayy3854"; depends=[]; }; + bnspatial = derive2 { name="bnspatial"; version="1.0.1"; sha256="0cm4kqidjlb64rnjmiwsbjay8fjzwbmpm8k1bl1kz6nj4y532v6d"; depends=[doParallel foreach gRain gRbase raster]; }; + bnstruct = derive2 { name="bnstruct"; version="1.0.2"; sha256="0n4gn1vhka694wdzignawyaca0rx2l0wjgw09fw42bkrswfjvxy1"; depends=[bitops igraph Matrix]; }; + boa = derive2 { name="boa"; version="1.1.8-2"; sha256="04lhqk5qfvaz1jk90glr2yi5vq7cdy0w8m6g2lnzk359l9y41zhp"; depends=[]; }; bodenmiller = derive2 { name="bodenmiller"; version="0.1"; sha256="0gqrjscgq4qgk7yl32w0965yscc1py9klr49s8q8hkzyihlwzim2"; depends=[]; }; boilerpipeR = derive2 { name="boilerpipeR"; version="1.3"; sha256="0467bjqhdmi3p02fp0r7rgm00x9ry464f2hniav990qzsw8i16q6"; depends=[rJava]; }; - bold = derive2 { name="bold"; version="0.3.0"; sha256="11b5zqyhvg3cc47mk8r7h219abj12paxcdb23gxqgkyrhlykkbks"; depends=[assertthat httr jsonlite plyr reshape stringr XML]; }; + bold = derive2 { name="bold"; version="0.4.0"; sha256="09ib3h9a3cjcysf5503qh1vrxd79dycsd0rg0xkikrxljzmfmv4b"; depends=[assertthat data_table httr jsonlite plyr reshape stringr tibble xml2]; }; + bookdown = derive2 { name="bookdown"; version="0.3"; sha256="0r9bchzg7im6psc3jphvshzbidc5bv5xaih1qg7b5518jy4iyvb9"; depends=[htmltools knitr rmarkdown yaml]; }; boolean3 = derive2 { name="boolean3"; version="3.1.6"; sha256="00s6ljhqy8gpwa3kxfnm500r528iml53q364bjcl4dli2x85wa9p"; depends=[lattice mvtnorm numDeriv optimx rgenoud rlecuyer]; }; boostSeq = derive2 { name="boostSeq"; version="1.0"; sha256="0sikyzhn1i6f6n7jnk1kb82j0x72rj8g5cimp2qx3fxz33i0asx6"; depends=[genetics lpSolveAPI]; }; - boostmtree = derive2 { name="boostmtree"; version="1.0.0"; sha256="1fkr7r1y7hsd1iv2qshy13p2kqy9hl08q66vfb96ma3ipf7cnw1n"; depends=[nlme randomForestSRC]; }; + boostmtree = derive2 { name="boostmtree"; version="1.1.0"; sha256="1k6cwiz6354xgmqyadm4vfrl4szcr2c9mgxgmmngdc28p7sm50i7"; depends=[nlme randomForestSRC]; }; boostr = derive2 { name="boostr"; version="1.0.0"; sha256="123ag8m042i1dhd4i5pqayqxbkfdj4z0kq2fyhxfy92a7550gib2"; depends=[foreach iterators stringr]; }; boot = derive2 { name="boot"; version="1.3-18"; sha256="0pi348vvgzn1ny54yxhw6kq6nl7rx9bpr9ji1a6wqs8ah5zj7z8j"; depends=[]; }; bootES = derive2 { name="bootES"; version="1.2"; sha256="0hcaw1v80zspdsy4wr464lmgq33807i2f6n2dc3r7qqwa80g4zz0"; depends=[boot]; }; @@ -3178,107 +3908,137 @@ in with self; { bootRes = derive2 { name="bootRes"; version="1.2.3"; sha256="0bb7w6wyp9wjrrdcyd3wh44f5sgdj07p5sz5anhdnm97rn1ib6dz"; depends=[]; }; bootSVD = derive2 { name="bootSVD"; version="0.5"; sha256="14xwbrpqj3j1xpsppgjxpn9ggsns2n1kmni9vn30vgy68zwvs2wy"; depends=[ff]; }; bootStepAIC = derive2 { name="bootStepAIC"; version="1.2-0"; sha256="0p6v4zjsaj1p6c678010fazdh40lpv0rvhczd1halj8aic98avdx"; depends=[MASS]; }; - bootnet = derive2 { name="bootnet"; version="0.2"; sha256="1ij4hjgp4nnc6x0l38xvkv5i06r7rdddrfjhjsaipkdkrxdjki9z"; depends=[abind corpcor dplyr ggplot2 gtools IsingFit IsingSampler Matrix mvtnorm qgraph]; }; - bootruin = derive2 { name="bootruin"; version="1.2-1"; sha256="1ii1fcj8sn9x82w23yfzxkgngrgsncnyrik4gcqn6kv7sl58f4r3"; depends=[]; }; + bootTimeInference = derive2 { name="bootTimeInference"; version="0.1.0"; sha256="0kpb0xnvyjf3z2zy1970zzmiiln232m8xykz9qylpmln91z6xnjm"; depends=[Rcpp RcppArmadillo]; }; + bootnet = derive2 { name="bootnet"; version="0.4"; sha256="1xc7ajvbsic4c881pn4k9xrbvijpjig9x8ij284ljvfbwd6ymgfd"; depends=[abind corpcor dplyr ggplot2 gtools huge IsingFit IsingSampler Matrix mgm mvtnorm parcor qgraph]; }; + bootruin = derive2 { name="bootruin"; version="1.2-4"; sha256="1gbvh99snchipf13kjhymcx60s2kni23y7lv8lhzd3d402grp68h"; depends=[]; }; bootsPLS = derive2 { name="bootsPLS"; version="1.0.3"; sha256="0jkpci97chbvlfkcbbj3gm2dnj5aiwfrh739kd4fa0zra4ac1adh"; depends=[mixOmics]; }; bootspecdens = derive2 { name="bootspecdens"; version="3.0"; sha256="0hnxhfsc3ac4153lrjlxan8xi4sg1glwb5947ps6pkkyhixm0kc1"; depends=[MASS]; }; bootstrap = derive2 { name="bootstrap"; version="2015.2"; sha256="1h068az4sz49ysb0wcas1hfj7jkn13zdmk087scqj5iyqzr459xf"; depends=[]; }; boottol = derive2 { name="boottol"; version="2.0"; sha256="01dps9rifzrlfm4lvi7w99phfi87b7khx940kpsr4m9s168a2dzv"; depends=[boot plyr]; }; - boral = derive2 { name="boral"; version="0.9.1"; sha256="1ls6is60d7h4zg5dhbgksjznfsffgim2pn6zgcvln7l6zl5di52s"; depends=[coda fishMod MASS mvtnorm R2jags]; }; + boral = derive2 { name="boral"; version="1.2"; sha256="1xd9g3ll6ax363ip0wh5zpk8yw23pcv4wxlm2xxshmxyx0k9gqfk"; depends=[abind coda fishMod MASS mvtnorm R2jags]; }; + bossMaps = derive2 { name="bossMaps"; version="0.1.0"; sha256="0w4ks1xicvfm8ari4fr18wjm0qj2nxdsapl6lpfjz8l1id0y78cg"; depends=[doParallel foreach ggplot2 raster rgdal rgeos scales sp tidyr]; }; boussinesq = derive2 { name="boussinesq"; version="1.0.3"; sha256="1j1jarc3j5rby1wvj1raj779c1ka5w68z7v3q8xhzjcaccrjhzxk"; depends=[]; }; + boxoffice = derive2 { name="boxoffice"; version="0.1.1"; sha256="19l65nxrj0q7vr5ds6cwf7ynaqzd3ivzx673svvl6wmxlgn67cfi"; depends=[foreach lubridate rvest xml2]; }; boxplotdbl = derive2 { name="boxplotdbl"; version="1.2.2"; sha256="01bvp6vjnlhc4lndxwd705bzlsh7zq0i9v66mxszrcz6v8hb9rwi"; depends=[]; }; - boxr = derive2 { name="boxr"; version="0.3.2"; sha256="0inwyvnx1846ng6b72y52ndx601ic4iw23ha499rj6ivrjm726ki"; depends=[assertthat bit64 digest dplyr httpuv httr mime rio stringr]; }; + boxr = derive2 { name="boxr"; version="0.3.4"; sha256="0wx3x65rk1ma8bw5h4yskr7ii95ynkm7il22l1bj34kv9f4bfyj3"; depends=[assertthat bit64 digest dplyr httpuv httr mime rio stringr]; }; + bpa = derive2 { name="bpa"; version="0.1.1"; sha256="0np7q1nasrq4j7ssaipvbjgrsi9n612p9lp96frq1dgix95mcgf0"; depends=[magrittr plyr]; }; bpca = derive2 { name="bpca"; version="1.2-2"; sha256="05ldz6b2s379mymj8jzvia9x6gj047gwsxvnv3zj9x8b1hvndnd6"; depends=[rgl scatterplot3d]; }; - bpcp = derive2 { name="bpcp"; version="1.3.1"; sha256="136wwxgs0cq1wk48r3xvh7ga2w5qmswbnxw9vg756imdzm1w6lnr"; depends=[]; }; + bpcp = derive2 { name="bpcp"; version="1.3.4"; sha256="0l4x3n7lcwinnrh2sy386grisj1x7k1d5hll1k4bljg01p7lb475"; depends=[]; }; bpkde = derive2 { name="bpkde"; version="1.0-7"; sha256="1ls6rwmbgb2vzsjn34r87ab8rnz3ls61g6f4x3jpglbk0j91f0h8"; depends=[]; }; + bpp = derive2 { name="bpp"; version="1.0.0"; sha256="11fgn92vvl7kklv0xdisf8gnf2rbhq11qyckqsxvc5wa821lmnkm"; depends=[mvtnorm]; }; bqtl = derive2 { name="bqtl"; version="1.0-32"; sha256="0jjqgsm9fmvz5nkgz608xfljjpmaf4rs4f7kxvpqn4b1l9s5lhci"; depends=[]; }; + braQCA = derive2 { name="braQCA"; version="0.9.9.6"; sha256="1xqy0vykxdp0kr87w1sq8yjqrj0y8xh64fr2y8l79763xkyxpn0y"; depends=[bootstrap dplyr QCA QCAGUI]; }; + braidReports = derive2 { name="braidReports"; version="0.5.3"; sha256="107c9lrzb55dw5pal8qqpn8is3nrh19vfngx3zcfpmc49f06kskq"; depends=[braidrm ggplot2]; }; braidrm = derive2 { name="braidrm"; version="0.71"; sha256="1cn0rdlw775pmzbjmhny7gkm901a3qgz7infqb5s9az606xg54d3"; depends=[]; }; - brainGraph = derive2 { name="brainGraph"; version="0.55.0"; sha256="11swjhpnnb6a2bq0xa0ai9jgzv0c481hc92rq1vpg1wzrlzz12rc"; depends=[abind ade4 boot cairoDevice data_table foreach ggplot2 Hmisc igraph oro_nifti plyr RGtk2 scales]; }; + brainGraph = derive2 { name="brainGraph"; version="0.72.0"; sha256="1r52zyvyxd7qj46ffpvv5vjjmkk8zanvq3w1mdww1fsim94i1507"; depends=[abind ade4 boot cairoDevice data_table foreach ggplot2 Hmisc igraph oro_nifti permute plyr RcppEigen RGtk2 scales]; }; brainR = derive2 { name="brainR"; version="1.2"; sha256="1515v6kk73p4s3vrnkpkilfxfyqrf7b762sq6j364ygsyfybvh2z"; depends=[misc3d oro_nifti rgl]; }; brainwaver = derive2 { name="brainwaver"; version="1.6"; sha256="0r79dpd9bbbn34rm29512srzj3m29qgvbryvrp1mwv8mmcsh6ij6"; depends=[waveslim]; }; + brea = derive2 { name="brea"; version="0.1.0"; sha256="0jawpl4d7himydb9z4kqpa7s6b7ghw9yp5j6xvzilbka0agpazck"; depends=[]; }; breakage = derive2 { name="breakage"; version="1.1-1"; sha256="0zjazyz92criiimpz4wyd4hd8ccspvh3hhqpd4qkfdzdf9wp3kns"; depends=[Imap]; }; - breakaway = derive2 { name="breakaway"; version="2.0"; sha256="0x4hrvx6nd0k2gv7xvi9z8pl3cr94glm9s6fcna7ml8ag19dqwny"; depends=[]; }; + breakaway = derive2 { name="breakaway"; version="3.0"; sha256="0y3h7gifv279z3x77jmr97c0i3vy58m5wsr8pa2vyn26m02rbkpc"; depends=[]; }; breakpoint = derive2 { name="breakpoint"; version="1.2"; sha256="004vi1qr7iib8ykg6sp7xzv0bb841h4vsz2x0cyrhkdp41frglx9"; depends=[doParallel foreach ggplot2 MASS msm]; }; brew = derive2 { name="brew"; version="1.0-6"; sha256="1vghazbcha8gvkwwcdagjvzx6yl8zm7kgr0i9wxr4jng06d1l3fp"; depends=[]; }; brewdata = derive2 { name="brewdata"; version="0.4"; sha256="1i8i3yhyph212m6jjsij61hz65a5rplxw8y2xqf6daqiisam5q6i"; depends=[RCurl stringdist XML]; }; brglm = derive2 { name="brglm"; version="0.5-9"; sha256="14hxjamxyd0npak8wyfmmb17qclj5f86wz2y9qq3gbyi2s1bqw2v"; depends=[profileModel]; }; bride = derive2 { name="bride"; version="1.3"; sha256="03k9jwklg1l8sqyjfh914570880ii0qb5dd9l0bg0d0qrghbj0rk"; depends=[]; }; - brms = derive2 { name="brms"; version="0.8.0"; sha256="04dvfvpq0pb30gpiz9mzr799sd2irlqv1v9f7fjmfj19gildyhj9"; depends=[abind coda ggplot2 gridExtra lme4 loo Matrix rstan shinystan statmod]; }; + bridgedist = derive2 { name="bridgedist"; version="0.1.0"; sha256="0hqkpwpi3nv6mfhljl65zcflf4wy72ag36hdam6s7kynfj41qz6w"; depends=[]; }; + bridger2 = derive2 { name="bridger2"; version="0.1.0"; sha256="0clp42nnbvd01n65azdi2ghp0mfqwsipzdl2d30q04lcvfkdpxrf"; depends=[BSDA data_table ggplot2 outliers plotly shiny shinydashboard]; }; + briskaR = derive2 { name="briskaR"; version="0.1.0"; sha256="0fx254pc250jv53kmd6miw8blcp43c72myah9g5ns2s84pcdmx6h"; depends=[deldir fftwtools fields MASS mvtnorm pracma raster rgdal rgeos sp]; }; + brm = derive2 { name="brm"; version="1.0"; sha256="0h4kgig28hkqv1amadznc0n9256dx613rxbn8s8si11ygx79x2dd"; depends=[]; }; + brms = derive2 { name="brms"; version="1.5.0"; sha256="1rjrf88wfbq1zzyxkrrajis6mrsv3zi4kdf7y8992bwfx53pwpph"; depends=[abind bayesplot coda evd ggplot2 loo Matrix matrixStats mgcv nlme Rcpp rstan rstantools RWiener shinystan statmod]; }; brnn = derive2 { name="brnn"; version="0.6"; sha256="0q3f3cbl89hgpav7bn54s13cysgz8fi0zm8byc9rgz0sqkjrxval"; depends=[Formula]; }; - broman = derive2 { name="broman"; version="0.62-1"; sha256="1hcwrzagm78gkllfz6jplwzirr082prsiykydfc90ai9m0in3wjk"; depends=[assertthat ggplot2 jsonlite RPushbullet]; }; - broom = derive2 { name="broom"; version="0.4.0"; sha256="0k9sbb4c4ncgnrsdr9bcl8nr57xdygjhh19mm8c7ymnsr56xcvxp"; depends=[dplyr nlme plyr psych reshape2 stringr tidyr]; }; - brotli = derive2 { name="brotli"; version="0.6"; sha256="01v2y8mwzcw7sfaqbq26528fpwmpprbd7lnn3prs5rwm3d9mafaa"; depends=[]; }; + broman = derive2 { name="broman"; version="0.65-1"; sha256="1zfcrkky4a71zq4mgnc0xcy0m8c9srwq850s97qry9a69f6j5c42"; depends=[assertthat ggplot2 jsonlite RPushbullet]; }; + broom = derive2 { name="broom"; version="0.4.2"; sha256="0i2s3jbi0v5xhbqkmms4f17i3x9s6lan4bj521qmxwiwc89r8h4z"; depends=[dplyr nlme plyr psych reshape2 stringr tidyr]; }; + brotli = derive2 { name="brotli"; version="0.8"; sha256="1cdc1ghvwdr64spns7x96gml9vqjd33xhk76w04nk0ldb3in4jfp"; depends=[]; }; brr = derive2 { name="brr"; version="1.0.0"; sha256="050ivnqcaxiyypd1sxfpy6ianhzzmvs6c77ga40g3440cvfigkgw"; depends=[gsl hypergeo pander stringr SuppDists TeachingDemos]; }; - brranching = derive2 { name="brranching"; version="0.1.0"; sha256="17n11i2wq16jzs1lk3wwyzfgacbm692g99vlakdqnr2a1c1vpfah"; depends=[ape httr taxize]; }; + brranching = derive2 { name="brranching"; version="0.2.0"; sha256="0y99px2m02rl60qgf6pjbjv6isp8v1w9sny6p2icgsx4bwxjxmns"; depends=[ape curl httr phytools taxize]; }; + bsam = derive2 { name="bsam"; version="1.1.1"; sha256="00ckj2pmyh7pqmbvwlgvgc3m53c807mri46jc0ivfwgf0kc8q0s0"; depends=[coda dplyr ggplot2 gridExtra msm mvtnorm rjags rworldxtra sp tibble]; }; + bsearchtools = derive2 { name="bsearchtools"; version="0.0.61"; sha256="11fqz8kdhqpc3jq34vgv3frzawgsl5y0s83rb2p54yb5yhd3p68w"; depends=[Rcpp]; }; bshazard = derive2 { name="bshazard"; version="1.0"; sha256="151c63pyapddc4z77bgkhmd7rsa1jl47x8s2n2s8yc6alwmj6dvs"; depends=[Epi survival]; }; bspec = derive2 { name="bspec"; version="1.5"; sha256="0jynvir7z4q1vrvhdn6wijdrjfrkk4544nlawabw2fnfxss91a91"; depends=[]; }; + bsplus = derive2 { name="bsplus"; version="0.1.0"; sha256="1hpjrmsn66brf1hpwfmg55jbpwbhvkz7sbr160z1cgq3hdhqm7r8"; depends=[htmltools lubridate magrittr purrr rmarkdown stringr]; }; bspmma = derive2 { name="bspmma"; version="0.1-1"; sha256="0bd6221rrbxjvabf1lqr9nl9s0qwav47gc56sxdw32pd99j9x5a9"; depends=[]; }; bssn = derive2 { name="bssn"; version="0.7"; sha256="1g2xhb7bqapwd5zbc4bl4h1fskd7k6gd0rz74hnydiiwxrwiihf6"; depends=[sn]; }; - bst = derive2 { name="bst"; version="0.3-13"; sha256="1jpjwmwchhlqx2li26xh0n88647nnjz58vmjxsq0kp7jaigy0xbn"; depends=[doParallel foreach gbm rpart]; }; - bsts = derive2 { name="bsts"; version="0.6.3"; sha256="1psr14nv20h1hzki32wsgyp23lbimbrchfbfaj1biwnl5xhhmrjm"; depends=[BH Boom BoomSpikeSlab xts zoo]; }; - btergm = derive2 { name="btergm"; version="1.7.0"; sha256="1xip1cr8j9blq4xnkj05f7c4alhij1i1k48ywhqr0bq09pi4rylc"; depends=[boot coda ergm igraph Matrix network ROCR sna speedglm statnet statnet_common texreg xergm_common]; }; + bst = derive2 { name="bst"; version="0.3-14"; sha256="02rnnv3f89329kw81a1v88wjzrfjshqjijw5hp3zyydcsfa3j088"; depends=[doParallel foreach gbm rpart]; }; + bsts = derive2 { name="bsts"; version="0.6.5"; sha256="1ywk73f5dnlpwz1hl1rpaxnvg9zag70fs237gw3gc8gsdydc7dlk"; depends=[BH Boom BoomSpikeSlab xts zoo]; }; + btb = derive2 { name="btb"; version="0.1.3"; sha256="0ac6jfk66ij4av5i63gm69ry7vfp08ka6l6l3y28ycf10fzp84k8"; depends=[Rcpp sp]; }; + btergm = derive2 { name="btergm"; version="1.8.2"; sha256="16vyxyg3nc7p65nrg46f5mh1py3i6vxk34m9645376s80gxkspcn"; depends=[boot coda ergm igraph Matrix network ROCR RSiena sna speedglm statnet statnet_common texreg xergm_common]; }; btf = derive2 { name="btf"; version="1.1"; sha256="0n1h4hmjpvj97mpvannh3s5l08m4zfv0w64hrgdv4s5808miwfzc"; depends=[coda Matrix Rcpp RcppEigen]; }; bujar = derive2 { name="bujar"; version="0.2-1"; sha256="0g6mj1x9zbxkn3kxwbs2ncjfsicicvyr92krz8yqrms042gbk9ji"; depends=[bst earth elasticnet gbm mboost mda modeltools mpath rms]; }; + bunchr = derive2 { name="bunchr"; version="1.2.0"; sha256="1b8hdg2x26k0ahx4gxdpzr36hy056939r4496q3vbgyd4bbk2fbd"; depends=[shiny]; }; + bundesligR = derive2 { name="bundesligR"; version="0.1.0"; sha256="0dnhbh9jh7dfbk7mfh8msq4ys5kakalr0kwkycycrb2q8rd049vp"; depends=[]; }; + burnr = derive2 { name="burnr"; version="0.1.2"; sha256="1cmf820148wmm9m8f41r81kckhn2iv3cw6k9qdybcxy1j1m520jp"; depends=[ggplot2 plyr reshape2]; }; bursts = derive2 { name="bursts"; version="1.0-1"; sha256="172g09d1vmwl83xs6gr4gfblqmx3apvblpzdr5d7fcw1ybsx0kj6"; depends=[]; }; bvarsv = derive2 { name="bvarsv"; version="1.1"; sha256="1bv4fbbi8bn7sqqpjlf8w5jpgydjr15wv5v9940wc42yk792yjrx"; depends=[Rcpp RcppArmadillo]; }; bvenn = derive2 { name="bvenn"; version="0.1"; sha256="1xrya49w5bd2b7plfxpqla60b2828rkm0rjmc4qnqzvrahsbal0y"; depends=[]; }; bvls = derive2 { name="bvls"; version="1.4"; sha256="18aaf7kk5mks3a59wwqhm1ckpn6s704l9m5nzy0x5iw0s98ijbm2"; depends=[]; }; - bvpSolve = derive2 { name="bvpSolve"; version="1.3.2"; sha256="1y6axzpbk7vnm2hsvihhci3cbbl61rlfc4kmfr335l77l6q2sd55"; depends=[deSolve rootSolve]; }; + bvpSolve = derive2 { name="bvpSolve"; version="1.3.3"; sha256="1q5sh3kj1c07zq7mx8sh4ggp1fvwh86394qrc3ildj4wrbakmzib"; depends=[deSolve rootSolve]; }; + bytescircle = derive2 { name="bytescircle"; version="1.1"; sha256="0c83d37kijcvr00pc4qqdci14cpbg6988izyjfjk1yliavyc6mwf"; depends=[]; }; c060 = derive2 { name="c060"; version="0.2-4"; sha256="1yzy0p6041rygqfwzb8dpyc7jq12javmhlvdcmmc7p59bbk7wv3j"; depends=[glmnet lattice mlegp penalizedSVM peperr survival tgp]; }; + c212 = derive2 { name="c212"; version="0.90"; sha256="15s0482kl7zd2kzxcyzd7gdclv1z8yn4x70cgsdlbmd5047pcn9k"; depends=[coda]; }; c3net = derive2 { name="c3net"; version="1.1.1"; sha256="0m4nvrs41kmlakc6m203zlncqwgj94wns8kzcb31xngjcacmcq42"; depends=[igraph]; }; cAIC4 = derive2 { name="cAIC4"; version="0.2"; sha256="13sp3wywv82wgi1vsbxwn68v9xigy0fi3mcwyxjmmgmnsxns2fza"; depends=[lme4 Matrix]; }; - cIRT = derive2 { name="cIRT"; version="1.1.0"; sha256="0gp3mmw1s57wg6rvh78261l4nwqg0zpr98q27v389fz2scab637d"; depends=[Rcpp RcppArmadillo]; }; - cOde = derive2 { name="cOde"; version="0.2.1"; sha256="1zbc4armnzjbf0n4a5vby4m2ls9xpf6dhllzm3f3d02cbywacijr"; depends=[]; }; + cIRT = derive2 { name="cIRT"; version="1.2.0"; sha256="1qgcga9rk4xqz1i2rzwwf11sip3s3gni44czg9d8sjd725hx1pmz"; depends=[Rcpp RcppArmadillo]; }; + cOde = derive2 { name="cOde"; version="0.2.2"; sha256="0v26ilbkg2af4mgn639mnslvvwlsq6il3pxx5brwdsd4816saav4"; depends=[]; }; cSFM = derive2 { name="cSFM"; version="1.1"; sha256="1znxsqa8xdifmryg7jiqbpzm837n4n862kg5x1aki52crc4zyk3k"; depends=[MASS mgcv mnormt moments sn]; }; - ca = derive2 { name="ca"; version="0.64"; sha256="09496pzm7cms8v38vbyspsd2kvff3s31xpqlq4mf04sjh0vdahjs"; depends=[]; }; + ca = derive2 { name="ca"; version="0.70"; sha256="0730c7nk49hz0k1i5nnhq2j3wbhrlhr1qvb50mk8vmqkbhb1pz1l"; depends=[]; }; caRpools = derive2 { name="caRpools"; version="0.83"; sha256="10m7fw1zfr9i6v2qg235diwf3fmfr88incxnqpvnhmqcn082mxrp"; depends=[biomaRt DESeq2 rmarkdown scatterplot3d seqinr sm VennDiagram xlsx]; }; caTools = derive2 { name="caTools"; version="1.17.1"; sha256="1x4szsn2qmbzpyjfdaiz2q7jwhap2gky9wq0riah74q0pzz76ank"; depends=[bitops]; }; + cablecuttr = derive2 { name="cablecuttr"; version="0.1.1"; sha256="1v3zhaxkp1h6lack2qk0v4zxh6fd0ymjnikw6bs7k540w2vrbs1g"; depends=[httr jsonlite]; }; cabootcrs = derive2 { name="cabootcrs"; version="1.0"; sha256="0a6y04jq837k1pk8b9nhgz7rima7s8jid6vdjyfvrqshgaiabg1q"; depends=[]; }; cacIRT = derive2 { name="cacIRT"; version="1.4"; sha256="145j6isqa8yj2nvlqkxagd076zs10ng3n44khi5p4jj77fjc8gh6"; depends=[]; }; - cairoDevice = derive2 { name="cairoDevice"; version="2.23"; sha256="0l83ssravr0jx6clvm8ppyh1hvyf8zkkl509hafphzfp29nkiamh"; depends=[]; }; - calACS = derive2 { name="calACS"; version="2.2.1"; sha256="16vzkvcdx0ppf6q03j93g4lgzn3an9dcpj9c5d8k3z9dspvim5vq"; depends=[]; }; + caesar = derive2 { name="caesar"; version="0.1.0"; sha256="1l0z64fsifx37j2h61kzygbwr3z3cncn48znrpb5cq10ma42igqf"; depends=[binhf]; }; + cairoDevice = derive2 { name="cairoDevice"; version="2.24"; sha256="1xbjxz1cxnwzvb6hjns2kk97krmx24chpyvjaa25xwmvy4x6qcps"; depends=[]; }; + calACS = derive2 { name="calACS"; version="2.2.2"; sha256="0a53k2rzyjksb0ypr5zrask4a6mgiyrqx0l2z3lm218y8pk2jf1w"; depends=[]; }; calibrar = derive2 { name="calibrar"; version="0.2.0"; sha256="1544bc5rhhc6d1mky7ngza00wwh63q07dkbzlwfgyavly8m9cplb"; depends=[cmaes foreach optimx]; }; calibrate = derive2 { name="calibrate"; version="1.7.2"; sha256="010nb1nb9y7zhw2k6d2i2drwy5brp7b83mjj2w7i3wjp9xb6l1kq"; depends=[MASS]; }; calibrator = derive2 { name="calibrator"; version="1.2-6"; sha256="1arprrqmczbhc1gl85fh37cwpcky8vvqdh6zfza3hy21pn21i4kh"; depends=[cubature emulator]; }; + callr = derive2 { name="callr"; version="1.0.0"; sha256="05gp4y69ixajvmhrh1qrn5cnzj9jhfdxrfxnm2l2xfisfa680mic"; depends=[]; }; calmate = derive2 { name="calmate"; version="0.12.1"; sha256="07sjbq7bcrhal52pdzsb5pfmk6a8a44wg8xn79sv4y5v74c5xaqz"; depends=[aroma_core MASS matrixStats R_filesets R_methodsS3 R_oo R_utils]; }; camel = derive2 { name="camel"; version="0.2.0"; sha256="0krilird8j69zbll96k46pcys4gfkcnkisww138wslwbicl52334"; depends=[igraph lattice MASS Matrix]; }; - camtrapR = derive2 { name="camtrapR"; version="0.98.0"; sha256="08hx3h4348hw3y230371pgvlw3q77srhang3mhlim7b48s38dmbf"; depends=[overlap rgdal secr sp]; }; - cancerTiming = derive2 { name="cancerTiming"; version="3.1.5"; sha256="1hs93brw5cnk2fk114aqvdcf020wq6dmnhcirw93y4xm79bqyjx5"; depends=[gplots LearnBayes]; }; - candisc = derive2 { name="candisc"; version="0.6-7"; sha256="1g2vypcniy94h462kylmzraa6q3ys9m0r1cn21dm8rzzjxid9g3g"; depends=[car heplots]; }; - cape = derive2 { name="cape"; version="1.3"; sha256="1qvjbnxydc16mflg1rmgp2kgljcna8vi88w34cs6k12wpgxmvz1f"; depends=[corpcor evd fdrtool igraph Matrix qpcR shape]; }; + camsRad = derive2 { name="camsRad"; version="0.3.0"; sha256="06gar6qan1ka01ngjvbpcv649yvfga697mplwn1x6qnfr4ngb7cs"; depends=[httr xml2]; }; + camtrapR = derive2 { name="camtrapR"; version="0.99.7"; sha256="0yhpxx7p02j10b2ascdf0mqhlv8gssi6v9g4pc0s4p6bi2zhs7m6"; depends=[overlap rgdal ritis secr sp taxize]; }; + cancerGI = derive2 { name="cancerGI"; version="1.0.0"; sha256="1chkcyf9m98gbn6b3vmb1baw7kii4g5vxvg2xfi7i6wwdn8sqr65"; depends=[igraph qvalue reshape2 survival systemfit]; }; + cancerTiming = derive2 { name="cancerTiming"; version="3.1.8"; sha256="1sfi8q2f5ag7iak0sf9pmqncb89w3gnxdiwjwpivkwhr28ais4mq"; depends=[gplots LearnBayes]; }; + candisc = derive2 { name="candisc"; version="0.7-2"; sha256="0sbvngpyni4pagqb5xqjnk5yjd391rdjqq7aypnm2wd3i1am90hm"; depends=[car heplots]; }; + cape = derive2 { name="cape"; version="2.0.2"; sha256="0ngm9scd3f2zcy7gy0lqk05cgbfrhhcss3mj5g6bj0byhgwd7msn"; depends=[corpcor doParallel evd fdrtool foreach HardyWeinberg igraph Matrix qpcR RColorBrewer regress shape]; }; caper = derive2 { name="caper"; version="0.5.2"; sha256="1l773sxmh1nyxlrjz8brnwhwraff826scwixrqmgdciqk7046d35"; depends=[ape MASS mvtnorm]; }; capm = derive2 { name="capm"; version="0.9.1"; sha256="1njfw4pl6hmapdspvwabn7db2c4nqf3ja4rlv1lmpaakinzhivj2"; depends=[deSolve FME ggplot2 maptools reshape2 rgdal shiny sp survey]; }; captioner = derive2 { name="captioner"; version="2.2.3"; sha256="0xg72pmgm84f0v45phfwxpsslhf12nhn1swmrj1yifj7g9sjvybj"; depends=[]; }; - captr = derive2 { name="captr"; version="0.1.5"; sha256="1z3l3wgvxylnjsybnvcl7aphkp60xpx43xs0n9nnan07fcb2n7bd"; depends=[curl jsonlite]; }; - capushe = derive2 { name="capushe"; version="1.1"; sha256="00rbsir00ibxa9r6b17sa1jryjxjjygzsan08pl9wa65r0gxzrkm"; depends=[MASS]; }; + captr = derive2 { name="captr"; version="0.2.0"; sha256="04bg1d22n2h24w4j46fg30p1n85qvy5868sllrcwybrv4j15xh1f"; depends=[curl jsonlite]; }; + capushe = derive2 { name="capushe"; version="1.1.1"; sha256="1aa76ir1kp67hiz7dr60azyc71yzslshyc640fjh0fpw0sp5kwbc"; depends=[MASS]; }; capwire = derive2 { name="capwire"; version="1.1.4"; sha256="18a3dnbgr55yjdk6pd7agmb48lsiqjpd7fm64dr1si6rpgpl4i9c"; depends=[]; }; - car = derive2 { name="car"; version="2.1-1"; sha256="1wzgy2pcylhvgrlly8v3gi29gc3gimrhmjvhrr93b1cy0wwjj0wx"; depends=[MASS mgcv nnet quantreg]; }; + car = derive2 { name="car"; version="2.1-4"; sha256="0a6v7rsd1xsdyapnfqy37m7c4kx9wslkzsizc9k0lmnba0bwyfgx"; depends=[MASS mgcv nnet pbkrtest quantreg]; }; carcass = derive2 { name="carcass"; version="1.6"; sha256="0nhp35nxjqqmy15rf9vc0qyymy7d0v8mc84570b9nc62g5xac8xy"; depends=[arm expm lme4 MASS survival]; }; cardidates = derive2 { name="cardidates"; version="0.4.7"; sha256="0dxb2941w56s479laf315hqh9iv3k2l1ds7k8hdl9akcacagjgs2"; depends=[boot lattice pastecs]; }; - cardioModel = derive2 { name="cardioModel"; version="1.3"; sha256="1r52pjywp2x5mm2hg296q893djkhlzh8d7vq9pg76qdpi0m9ralg"; depends=[lubridate nlme]; }; + cardioModel = derive2 { name="cardioModel"; version="1.4"; sha256="1a2nvn4a4zc89pb01m20pxqgbj0ypzzvx9w2vfzwly1kzkhvc9hr"; depends=[lubridate nlme]; }; care = derive2 { name="care"; version="1.1.9"; sha256="0fx5cbi1fx3hpyzghn1788rkh91i10z1ngryqc1v3iqqn3akbk4j"; depends=[corpcor]; }; - caret = derive2 { name="caret"; version="6.0-64"; sha256="1pgbqzivks6vpaw2pq72yv81a98dm264hmj2vnk4vhyvdi91ihq9"; depends=[car foreach ggplot2 lattice nlme plyr reshape2]; }; + caret = derive2 { name="caret"; version="6.0-73"; sha256="1jzaqwv4glyqqnfbpalgajd0ag866247vvdh5i83ffqs1yhs984h"; depends=[car foreach ggplot2 lattice ModelMetrics nlme plyr reshape2]; }; caretEnsemble = derive2 { name="caretEnsemble"; version="2.0.0"; sha256="0v9gyp81abrbm8b79ch927iqh0v84q5222bvg1wx8n65vx59sx42"; depends=[caret data_table digest ggplot2 gridExtra lattice pbapply plyr]; }; caribou = derive2 { name="caribou"; version="1.1"; sha256="0ibl3jhvsgjfcva0113z0di9n5n30bs90yz0scckfv1c0pjhn4xd"; depends=[]; }; caroline = derive2 { name="caroline"; version="0.7.6"; sha256="1afxxbrd7w628l4pxdmvwbs7mbgxlhnfq3nxk2s93w47gn7r9fp7"; depends=[]; }; - cartography = derive2 { name="cartography"; version="1.2"; sha256="03p95vx3qhcf8kkb265229ki1njmhw3d56hypm9gq9wpnvk4gw6b"; depends=[classInt sp]; }; + carpenter = derive2 { name="carpenter"; version="0.2.0"; sha256="0n2w8l9gch0zvq3k0bsqqq28vf6s0czn3ybm0sy2i1bkq85zfm82"; depends=[dplyr lazyeval magrittr pander tidyr]; }; + cartogram = derive2 { name="cartogram"; version="0.0.2"; sha256="055aq2fmbx6ypyqsj427l37px8fld4b9bmc2kcmsi6fmnncb5pxa"; depends=[rgeos sp]; }; + cartography = derive2 { name="cartography"; version="1.4.1"; sha256="0bblhnz94rhjrrm0v9mvlvqrcqfxq4762crijk34xf9cxcpmhjx4"; depends=[classInt raster rgeos rosm sp]; }; carx = derive2 { name="carx"; version="0.6.2"; sha256="1wijkpbv2x75ay9pba4sjazjpalrd31zclnnansmhghf1wiizciq"; depends=[matrixStats mvtnorm nlme tmvtnorm xts zoo]; }; - caschrono = derive2 { name="caschrono"; version="1.4"; sha256="1l9hmsacynh73kh14jrp7a42385v78znn9ll1jchzgkyz2x4dibw"; depends=[forecast Hmisc its timeSeries]; }; - caseMatch = derive2 { name="caseMatch"; version="1.0.6"; sha256="0ak5q7pijmq359sm2vy5rr1szxv0kzg6ydka3ny24vsx2lx3fdrs"; depends=[]; }; + caschrono = derive2 { name="caschrono"; version="2.0"; sha256="091zqin2cr9p50zmifrb52dxy10zflm7f0lr9nissy589qjdd0gk"; depends=[Hmisc zoo]; }; + caseMatch = derive2 { name="caseMatch"; version="1.0.7"; sha256="1xd7mlnknjrilxcp0w0b36aaiql6jdqgyin1823r2x8vl9r4aqns"; depends=[]; }; cat = derive2 { name="cat"; version="0.0-6.5"; sha256="1gv7chqp6kccipkrxjwhsa7yizizsmk4pj8672rgjmpfcc64pqfm"; depends=[]; }; catIrt = derive2 { name="catIrt"; version="0.5-0"; sha256="09010z1q96nbnpys6mybspaqy57lvgd2cvwgnfijzgx3kl87pwnl"; depends=[numDeriv]; }; - catR = derive2 { name="catR"; version="3.6"; sha256="1a5wfi944x0a8bgknlgrdxqj5h2zz15lq8k0iavd1k8bifir3pdi"; depends=[]; }; - catdap = derive2 { name="catdap"; version="1.2.2"; sha256="02rz5wqbbvh73gjfh4bg31qcpfa48b4bm3h1i19r3siajvqaxkkb"; depends=[]; }; + catR = derive2 { name="catR"; version="3.12"; sha256="15db9mfpnrrghiksfrfqqwfhw6fwlqlabc12xq1szg010k343dvb"; depends=[]; }; + catdap = derive2 { name="catdap"; version="1.2.4"; sha256="0vvrlbdjml1cxf6jafjycv0k3kzd2xy1zcwjv0rh3cswxmvpnh3a"; depends=[]; }; catdata = derive2 { name="catdata"; version="1.2.1"; sha256="0fjylb55iw8w9sd3hbg895pzasliy68wcq95mgrh7af116ss637w"; depends=[MASS]; }; cate = derive2 { name="cate"; version="1.0.4"; sha256="0qck6675xm5xbw440m1b6n38wjwk7izx3s0zpxbmhc9wh12c5prk"; depends=[corpcor esaBcv leapp MASS ruv sva]; }; catenary = derive2 { name="catenary"; version="1.1.1"; sha256="0gd46zvd51xvra0d7k7qdcmfl71vcfk750lcafkhmr4cg0vkqcz7"; depends=[boot ggplot2]; }; cati = derive2 { name="cati"; version="0.99.1"; sha256="0sg6qagv1wiygylgygjfn7v4n99ifaaa34qvaspmm9b4fyfcxqa5"; depends=[ade4 ape e1071 FD geometry hypervolume mice nlme rasterVis vegan]; }; - catnet = derive2 { name="catnet"; version="1.14.8"; sha256="03y7ddjyra3cjq7savdgickmw82ncx4k01rn752sks6rpl6bjslc"; depends=[]; }; + catlearn = derive2 { name="catlearn"; version="0.3"; sha256="1bqcv58g4111yjschzdikb130as4wv08pxppzwpjh4k2pg929jmk"; depends=[Rcpp]; }; + catnet = derive2 { name="catnet"; version="1.15.0"; sha256="0z2ps2wb33hc0dg08v70gvpy2zibr6kqjjv90g07hkmrhp6zjk5n"; depends=[]; }; catspec = derive2 { name="catspec"; version="0.97"; sha256="1crry0vg2ijahkq9msbkqknljx6vnx2m88bmy34p9vb170g9dbs1"; depends=[]; }; causaldrf = derive2 { name="causaldrf"; version="0.3"; sha256="16gqx8b8alwm8a4lm69qamnqr3bg2qbz0d6q4lyqyrwsk12grid6"; depends=[mgcv survey]; }; - causaleffect = derive2 { name="causaleffect"; version="1.2.4"; sha256="10hn2wy47n4j7d43bvzj1rdi8fjrg2p3czcf50631smg8a2rarf0"; depends=[ggm igraph XML]; }; + causaleffect = derive2 { name="causaleffect"; version="1.3.3"; sha256="1nglsdnd0zb0qzyyw22fnlqzc8ds9mqdnc9anl9g3pdn9lz2wkqc"; depends=[ggm igraph XML]; }; causalsens = derive2 { name="causalsens"; version="0.1.1"; sha256="1z92ckqa07ajm451wrldxx9y43nawlvj2bsz0afxc9mrhjwjg5dh"; depends=[]; }; - cba = derive2 { name="cba"; version="0.2-15"; sha256="1qw1r5drxip4y1a59hwz92iw50nj3vkxynsisv28srnwr58imnaj"; depends=[proxy]; }; + cba = derive2 { name="cba"; version="0.2-18"; sha256="15fjnc9mg30fhm9rfsgz7d24hx83ra8bgyc2s1sz5gda4ppq53pr"; depends=[proxy]; }; + cbird = derive2 { name="cbird"; version="1.0"; sha256="0kzylylk46swd7f0j6kjyrcs3plbx9799q9kb8hjxmgh0qcjk2p6"; depends=[]; }; cbsodataR = derive2 { name="cbsodataR"; version="0.2.1"; sha256="0nsg0fzaqhzv8r2lwz5xlybwgv25c0a2hid91ky95yaqvnjrp6mq"; depends=[jsonlite whisker yaml]; }; ccChooser = derive2 { name="ccChooser"; version="0.2.6"; sha256="1vgp4zhg46hcf9ma2cmwgnfrqkmq1arh0ahyzjpfk3817vh7disc"; depends=[cluster]; }; ccaPP = derive2 { name="ccaPP"; version="0.3.2"; sha256="166spwqsqbp42mr1acglydlxspcpn8vhnim8r3s9m81sa9pmazpj"; depends=[pcaPP Rcpp RcppArmadillo robustbase]; }; @@ -3286,330 +4046,415 @@ in with self; { cccp = derive2 { name="cccp"; version="0.2-4"; sha256="1hw0xzfdycrnhkym5va430jk1b9ywf7wbm9qyj4a62n210hk4nzc"; depends=[Rcpp RcppArmadillo]; }; cccrm = derive2 { name="cccrm"; version="1.2.1"; sha256="180hzxm4z91hh008lysq1f0zky7qngg5z1laa1c119g4rqqcdskl"; depends=[gdata nlme]; }; ccda = derive2 { name="ccda"; version="1.1"; sha256="0ya9x1b41l0pjyyfdswjyip0c2v8z7gncbj7cdz0486ad75229x7"; depends=[MASS]; }; + ccdrAlgorithm = derive2 { name="ccdrAlgorithm"; version="0.0.2"; sha256="1q6fcmd2byjpwsqa9a9m9w8dm9gy76g9477p9jb8q92kiv2rs6bq"; depends=[Rcpp sparsebnUtils]; }; ccgarch = derive2 { name="ccgarch"; version="0.2.3"; sha256="0angffla3sk9i86v6bbsav95fp3mz5yvq7qfv0fx2v0nd2cx116w"; depends=[]; }; - cchs = derive2 { name="cchs"; version="0.2.0"; sha256="15bihlpw2q7mcna9200hlzvvbbyr3rrc0xbxyjca1n9dbgsqpibp"; depends=[survival]; }; - cclust = derive2 { name="cclust"; version="0.6-20"; sha256="1davlnrikfriczdwlprqd46axs9acvz30hhni134cisy11snlq7s"; depends=[]; }; - cda = derive2 { name="cda"; version="1.5.1"; sha256="09a2jb25219hq6if3bx03lsp94rp2ll9g73dhkdi665y7rlhgqwh"; depends=[dielectric plyr randtoolbox Rcpp RcppArmadillo reshape2 statmod]; }; + cchs = derive2 { name="cchs"; version="0.3.0"; sha256="0163qvy1k39bwbbidr7wj6cs0nv8m8nh0as9532j8mshq14d0i8c"; depends=[survival]; }; + cclust = derive2 { name="cclust"; version="0.6-21"; sha256="1n5hh0017bcq8ck52qq89jm9zgdfpmiksrypsnv2vvhk3nr0s91c"; depends=[]; }; + cda = derive2 { name="cda"; version="2.0.0"; sha256="1vq90z6kafiz5b884hxsz3lg8a0zis1n475lmvwlymcam5rpgjrc"; depends=[randtoolbox Rcpp RcppArmadillo reshape2 statmod]; }; cdb = derive2 { name="cdb"; version="0.0.1"; sha256="1rdb4lacjcw67apdyiv7cl1xvv9d1mrzck1qk605n6794k7wf2ys"; depends=[bitops]; }; - cdcfluview = derive2 { name="cdcfluview"; version="0.4.0"; sha256="1b0l6vqhks9mqpx3c94qip3dd8031rl4jjqjnmdpcvmfhg335yjf"; depends=[dplyr httr pbapply xml2]; }; + cdcfluview = derive2 { name="cdcfluview"; version="0.5.1"; sha256="0k63hrx3cc04xpi2sxl5g8mn7lc7rh4q33mj3filyiyppj16jixf"; depends=[dplyr httr jsonlite purrr readr V8 xml2]; }; cdcsis = derive2 { name="cdcsis"; version="1.0"; sha256="1fxdsaqpjhpffn2fxddfcrx8wxwyvfws6rxkpp57g25980xiyzkd"; depends=[ks]; }; - cdfquantreg = derive2 { name="cdfquantreg"; version="1.0.3"; sha256="1czb9v2naxzxfyga2npfljlgx15k1mspqksn6jql5faksbgfqb0v"; depends=[Formula MASS pracma]; }; + cdfquantreg = derive2 { name="cdfquantreg"; version="1.1.1"; sha256="17ghqcxnaz25n0qrar1bs2i4hcpn1gdzdv53r4krivdzkbi9p90a"; depends=[Formula MASS pracma]; }; + cdlTools = derive2 { name="cdlTools"; version="0.11"; sha256="0jqr0j6hwqwx574659i3mfzf4hcmmxfd3x28d52dwgpwsv0r10gn"; depends=[raster RCurl rgdal XML]; }; cdom = derive2 { name="cdom"; version="0.1.0"; sha256="00xqqqhskjlkz8ii7kqyabxk8995w7g9jiz1isyqjpwg8nsa3x28"; depends=[broom ggplot2 minpack_lm tidyr]; }; + cds = derive2 { name="cds"; version="1.0.3"; sha256="1h34k96h7ajkaqsw4dlqri63hrbnshaqwrdl74wlgycdlbvrqj05"; depends=[clue colorspace copula limSolve MASS]; }; cec2005benchmark = derive2 { name="cec2005benchmark"; version="1.0.4"; sha256="0bwv63l31hiy63372nvnyfkpqp61cqjag0gczd2v2iwsy3hyivpd"; depends=[]; }; cec2013 = derive2 { name="cec2013"; version="0.1-5"; sha256="07i2vp1x3qaw5di5vr5z70d47hh9174pjckjlhgv0f2w97slwc1i"; depends=[]; }; celestial = derive2 { name="celestial"; version="1.3"; sha256="0icsrpw8y7r0ls8ch5b25fl4rnvs6x5y2wscmcmpp4fa4x64qqg6"; depends=[RANN]; }; cellVolumeDist = derive2 { name="cellVolumeDist"; version="1.3"; sha256="00hq3nbfbnmg2lhrqd0glkh5ld50fv54ll3q6v875d1lgs44sln1"; depends=[gplots minpack_lm]; }; - cellranger = derive2 { name="cellranger"; version="1.0.0"; sha256="1zyf9hxhj1s660xyqp3klc11plfhyzv4fi03p7j2p5grw280cm2x"; depends=[]; }; + cellWise = derive2 { name="cellWise"; version="1.0.0"; sha256="1cpkz256z6ngqdd1wa0ajyjcl0j1xln2f0hwsw24wfzgb8sdj6ac"; depends=[ggplot2 gridExtra matrixStats reshape2 scales]; }; + cellranger = derive2 { name="cellranger"; version="1.1.0"; sha256="16fgi3annn34c3cxi0pxf62mmmmxi21hp0zzlv7bkfsjqy4g4f2x"; depends=[rematch tibble]; }; cem = derive2 { name="cem"; version="1.1.17"; sha256="1jnhsrc1jhax3zlw9ynla7g9z5i4w01iar7f7hmv92kp1cwh8rbd"; depends=[combinat lattice MatchIt nlme randomForest]; }; cems = derive2 { name="cems"; version="0.4"; sha256="0mk02m702xfr1gh0l3973z1hdpncgjl2vfd1k1iss5s64k56gs4q"; depends=[plotrix rgl vegan]; }; censNID = derive2 { name="censNID"; version="0-0-1"; sha256="1ij5ci6nkqf0rq51vyh4jw5sr3y46yndfkjmwl78ppdj66axxir5"; depends=[]; }; - censReg = derive2 { name="censReg"; version="0.5-20"; sha256="15k7iq4275dyah3r47vgxsx6g6mr7ma53lkv6d1n89bczzys72kx"; depends=[glmmML maxLik miscTools sandwich]; }; - censorcopula = derive2 { name="censorcopula"; version="1.0"; sha256="1y2vh6k6v5j5k3w4mk4mglv92103bz1mihf41jd55ky39dyr0gmr"; depends=[copula]; }; + censReg = derive2 { name="censReg"; version="0.5-22"; sha256="0s955gzd40nwl2qq20ss1yqjfpdrhv6bwbiksvd1smg4ip038w5q"; depends=[glmmML maxLik miscTools plm sandwich]; }; + censorcopula = derive2 { name="censorcopula"; version="2.0"; sha256="16pk4xlpliif02qznrhvl8qmrr6k4kknygqxcm83nsjxy6dcyga8"; depends=[copula]; }; + censusGeography = derive2 { name="censusGeography"; version="0.1.0"; sha256="1ncgd05ml571g3vy1g4p5xxg2bm08hbb6d5r3hpz7frn7w3l8l1d"; depends=[qdapTools]; }; censusr = derive2 { name="censusr"; version="0.0.2"; sha256="1x2s0q0d30hsb5sqdgvlz8anv5vcsm0ld9p96jzsin6lfsgbb1dm"; depends=[dplyr httr]; }; + censys = derive2 { name="censys"; version="0.1.0"; sha256="0r0yvaidn0qn96hx461415hywsjfgaz9wvvdssx7w97v2ndnk9sy"; depends=[httr jsonlite purrr stringi]; }; cents = derive2 { name="cents"; version="0.1-41"; sha256="03ycbd0c8b7danbblaixg6sm7msr9ixkanqswczqa8n2frhjfgj0"; depends=[]; }; cepp = derive2 { name="cepp"; version="1.7"; sha256="01hvm6586xnb1crvk7brqh3dm2j44ia5lrl5swnf6pb682yskbq0"; depends=[randtoolbox trust]; }; cernn = derive2 { name="cernn"; version="0.1"; sha256="0gz2x20pgsiq85hwkkpg4s1cdlw9plygx0446djc7qsymp469p2w"; depends=[]; }; - cffdrs = derive2 { name="cffdrs"; version="1.7.3"; sha256="1v2iwphw468lpw2im50vf2h762sq8fj84fakqr96zb7im9890zw1"; depends=[data_table doParallel foreach raster rgdal spatial_tools]; }; + cffdrs = derive2 { name="cffdrs"; version="1.7.5"; sha256="1v5acbp8469b2mbv3x6986f8rw6hh34jqkwdm6fp50dx1r8x9p1x"; depends=[data_table doParallel foreach raster rgdal spatial_tools]; }; + cg = derive2 { name="cg"; version="1.0-3"; sha256="1kbyal1sicbr10yvxpwgcij710kqpi23vmndp9kyfzn3k8zfird3"; depends=[Hmisc lattice MASS multcomp nlme rms survival VGAM]; }; cgAUC = derive2 { name="cgAUC"; version="1.2.1"; sha256="172f9rkfhv4xzwpw8izsnsdbcw9p3hvxhh0fd8hzlkil7vskr3k8"; depends=[Rcpp]; }; - cgam = derive2 { name="cgam"; version="1.3"; sha256="0lyhgiwskvcbbzd6y9ryndk4m3hjcwhd2ysnlhx7vkazp8936y87"; depends=[coneproj]; }; + cgam = derive2 { name="cgam"; version="1.6"; sha256="04mwkij3fyamm8i1wnd87vihcg7c45872n10q9ax5f2nby95ddrc"; depends=[coneproj svDialogs]; }; cgdsr = derive2 { name="cgdsr"; version="1.2.5"; sha256="1w5nd4hirlw8s9a8ysr6102pq9sbz4820qni06g98ykyg7yb32hx"; depends=[R_methodsS3 R_oo]; }; cggd = derive2 { name="cggd"; version="0.8"; sha256="06z0mrxxc02parn9vkjv89qq4yqmsccsy319fi6c5iarssyvin1r"; depends=[]; }; cgh = derive2 { name="cgh"; version="1.0-7.1"; sha256="1fgjz43bgnswlyvrm669x697lybq3jyzz4l8ppgxqwxp4p4d2yqn"; depends=[]; }; cghFLasso = derive2 { name="cghFLasso"; version="0.2-1"; sha256="0b1hnjf9g0v47hbz0dy9m6jhcl1ky20yyhhmm8myng2sndcpjsbf"; depends=[]; }; cghseg = derive2 { name="cghseg"; version="1.0.2-1"; sha256="0q9ks19r21b6p0gfd7mnsgp7pbihz3yzmbzijlrx178f1z9yjx5q"; depends=[]; }; cgwtools = derive2 { name="cgwtools"; version="3.0"; sha256="01888n056x4c8g0676jnbh6d89hamzxrh33aw6r28mzlnmfy5lmw"; depends=[]; }; - changepoint = derive2 { name="changepoint"; version="2.2.1"; sha256="1ifqv2qv8lwsfwia14dn53hs29xc027ap397l2wpmmmrzx0v6vrf"; depends=[zoo]; }; + changepoint = derive2 { name="changepoint"; version="2.2.2"; sha256="1jbki95pck10phpxna0b4i79hhl912zqi5ii9mjqb673y64dszkj"; depends=[zoo]; }; + changepoint_np = derive2 { name="changepoint.np"; version="0.0.2"; sha256="03i4l59h8cr6bizbqn288x9r85kvaz1dyhkv5fsj1189qpdi9m88"; depends=[changepoint zoo]; }; cheb = derive2 { name="cheb"; version="0.3"; sha256="0vqkdx7i40w493vr7xywjypr398rjzdk5g410m1yi95cy1nk4mc7"; depends=[]; }; chebpol = derive2 { name="chebpol"; version="1.3-1789"; sha256="1505zdzvc9drw7n8qw5jmqligjgp5gwwki4wlk8dsm0p3p06dvd2"; depends=[]; }; - checkmate = derive2 { name="checkmate"; version="1.7.3"; sha256="11xwdvpi6i9cm3fp44fgish0vxpb6jqbcd24hmppm39ixf28ajg2"; depends=[backports]; }; - checkpoint = derive2 { name="checkpoint"; version="0.3.15"; sha256="1mzf5d2mxwc7l9149a0sbxamxnmq4xc1ia8n5sd412sv5gmzxw89"; depends=[]; }; - cheddar = derive2 { name="cheddar"; version="0.1-630"; sha256="15hx9pm4pwmzwb82qgbf4ryy7zbsv64zw4qm6v7xkkaw27rjl4vg"; depends=[]; }; + checkmate = derive2 { name="checkmate"; version="1.8.2"; sha256="1zqcggl9m7slvc0q6zyhssdypb7jzf3l9byl5vxh1qdwjiw2y64g"; depends=[backports]; }; + checkpoint = derive2 { name="checkpoint"; version="0.3.18"; sha256="17r3hamj66hx1w050yim21b8kp1mbfkjh6rsdmd0z3s04wash7bi"; depends=[]; }; + cheddar = derive2 { name="cheddar"; version="0.1-631"; sha256="0s6v3xcpv8ppgx6q6h2hgrjcf3f3i87kmylnr9q9zhry7729aiyn"; depends=[]; }; chemCal = derive2 { name="chemCal"; version="0.1-37"; sha256="1sbmr8arczc65nzbgr5rfk2mbbnk6h60ni9cd9jngbhgdf0g1scw"; depends=[]; }; - chemometrics = derive2 { name="chemometrics"; version="1.3.9"; sha256="089zlp4ba6yyxjh2p7fcph29lnxyk1gifb44fw7lsslvg19xlgjm"; depends=[class e1071 lars MASS mclust nnet pcaPP pls robustbase rpart som]; }; + chemometrics = derive2 { name="chemometrics"; version="1.4.1"; sha256="019r0n4s6lzzjyp94zv12gn113p69c4s4ji0aqinfzb5fw0dlikn"; depends=[class e1071 lars MASS mclust nnet pcaPP pls robustbase rpart som]; }; cherry = derive2 { name="cherry"; version="0.6-11"; sha256="0ixrzbzg559h0qb33b9158rk6w6as2b34b7iq5vzm429cpyzl7l8"; depends=[bitops lpSolve Matrix slam]; }; + chi = derive2 { name="chi"; version="0.0"; sha256="0mn402vwiwcjdbchk1d3pdq4ir992aa0h3xf1m7y9mfkqyzkdqpj"; depends=[]; }; + chi2x3way = derive2 { name="chi2x3way"; version="1.1"; sha256="13qc8sigiw4gcxk8y50q7yfgzbssjyl41fizzjqzcp3p14kpsmzw"; depends=[]; }; childsds = derive2 { name="childsds"; version="0.5"; sha256="1fmisp6k375harjxsyzpwnd8zh3kd7vlhin18q1svfwdjyy9k3xh"; depends=[]; }; - chillR = derive2 { name="chillR"; version="0.62"; sha256="0fj7kymwdhi4svqarkljln01d78bspflh910s53r2sj78l9sv53g"; depends=[fields httr Kendall pls readxl sp XML]; }; + chillR = derive2 { name="chillR"; version="0.65"; sha256="0r584h2y2w7hcrdxvf7xlw4ivbyid293li0scxwvkd4v8s78kmcm"; depends=[fields httr Kendall pls raster readxl RMAWGEN sp XML]; }; + chinese_misc = derive2 { name="chinese.misc"; version="0.1.1"; sha256="0gcr0lw3ns3wbjchhzb0alabs4d8fmq8gvf4ggph3m8fcyfch0cc"; depends=[jiebaR NLP Ruchardet stringi tm]; }; chipPCR = derive2 { name="chipPCR"; version="0.0.8-10"; sha256="1mff7n7ga4sfwvcq7zkjkrl68nybnm2zkn37hmxvnw9yl3ls9lnw"; depends=[lmtest MASS outliers ptw quantreg Rfit robustbase shiny signal]; }; - chngpt = derive2 { name="chngpt"; version="2015.9-5"; sha256="0yqapf9fq0arh1hgwd5lklp6fklia926n0h1980731hqxd362bpq"; depends=[kyotil MASS survival]; }; + chngpt = derive2 { name="chngpt"; version="2016.7-31"; sha256="1hjqdkqai6aij3giarbxasijipb376qm081ri9w6snd5gy6izzsi"; depends=[boot kyotil MASS survival]; }; choiceDes = derive2 { name="choiceDes"; version="0.9-1"; sha256="07nnqqczi9p3cffdijzx14sxhqv1imdakj7y94brlr5mbf5i4fl4"; depends=[AlgDesign]; }; choplump = derive2 { name="choplump"; version="1.0-0.4"; sha256="0fn6m3n81jb7wjdji4v04m53gakjfsj3ksm546xxz5zm7prk237s"; depends=[]; }; chopthin = derive2 { name="chopthin"; version="0.2.1"; sha256="0sib3ic79hff5w2xmmw4z9c6bax33jczrcijs7ywdb8y3viwy5av"; depends=[Rcpp]; }; - chords = derive2 { name="chords"; version="0.90"; sha256="0wz5glm15615xb3cicc0m34zg78qzng3lpmysswbrfhc8x4kkchh"; depends=[MASS]; }; - choroplethr = derive2 { name="choroplethr"; version="3.5.0"; sha256="0askw7flbh3yd6ycmymzqxxgad7hzlp294dw7dijxyv0z5051d2y"; depends=[acs dplyr ggmap ggplot2 Hmisc R6 RgoogleMaps scales stringr WDI]; }; - choroplethrAdmin1 = derive2 { name="choroplethrAdmin1"; version="1.1.0"; sha256="0xfqw7spjali13sdq0jp3p62fgzvfm2ixbbcay8iwjm5plh5p5sw"; depends=[ggplot2]; }; - choroplethrMaps = derive2 { name="choroplethrMaps"; version="1.0"; sha256="00dgwikfxm1p1dqz1ybsxj1j8jcmrwa08m2d3zsww2invd55pk7g"; depends=[]; }; + chords = derive2 { name="chords"; version="0.95.4"; sha256="1v6zvl1mv9fyf6hx1fpbj3i7s893n4y1w4j9rw1arps006qz2jqn"; depends=[MASS Matrix]; }; + choroplethr = derive2 { name="choroplethr"; version="3.5.3"; sha256="1iagrm8ybr7whn77i96cnyl2kil96lb9zznlbc93kcy17jbf4yns"; depends=[acs dplyr ggmap ggplot2 Hmisc R6 RgoogleMaps scales stringr WDI]; }; + choroplethrAdmin1 = derive2 { name="choroplethrAdmin1"; version="1.1.1"; sha256="13ljs21hdhiv6n4napmk1gjnjhpll6j5wyijzv4xnnbi1y3ns7a9"; depends=[ggplot2]; }; + choroplethrMaps = derive2 { name="choroplethrMaps"; version="1.0.1"; sha256="0ghqb2d1h0qkbcsll6ck2qk5sfvdwsrlh3phlbsjbak30832j7fr"; depends=[]; }; chromer = derive2 { name="chromer"; version="0.1"; sha256="0fzl2ahvzyylrh4247w9yjmwib42q96iyhdlldchj97sld66c817"; depends=[data_table dplyr httr]; }; chromoR = derive2 { name="chromoR"; version="1.0"; sha256="1x11byr6i89sdk405h6jd2rbvgwrcvqvb112bndv2rh9jnrvcw4z"; depends=[gdata haarfisz]; }; - chron = derive2 { name="chron"; version="2.3-47"; sha256="1xj50kk8b8mbjpszp8i0wbripb5a4b36jcscwlbyap8n4487g34s"; depends=[]; }; - chunked = derive2 { name="chunked"; version="0.2.0"; sha256="13fi56dpvvf1shchvyank31xmb8wh9rszb74p2bfh3b5shwygx97"; depends=[dplyr LaF lazyeval]; }; + chron = derive2 { name="chron"; version="2.3-50"; sha256="1w3sl60gsirniqslb3pa75caiqbzbvc44phpd4czvwkb62xx1vx9"; depends=[]; }; + chunked = derive2 { name="chunked"; version="0.3"; sha256="1qhrq957w8nyxndvrnf3xh1p1g7f9qjyr12ybcysgrz4lk0q8xcs"; depends=[DBI dplyr LaF lazyeval]; }; cin = derive2 { name="cin"; version="0.1"; sha256="1pwvy5nh5nrnysfqrzllb9fcrpddqg02c7iw3w9fij2h8s2v6kq5"; depends=[]; }; - circlize = derive2 { name="circlize"; version="0.3.4"; sha256="02d2di0v6cqmp5rszrmynrnyg00p6wd7d000ghbwsjw2679ysr13"; depends=[colorspace GlobalOptions shape]; }; + circlize = derive2 { name="circlize"; version="0.3.9"; sha256="0zaqisklz28y262lwh11m4fi5x6rr6hzw4fzibgsx4x34nxxavlb"; depends=[colorspace GlobalOptions shape]; }; circular = derive2 { name="circular"; version="0.4-7"; sha256="1kgis2515c931ir76kpxnjx0cscw4n09a5qz1rbrhf34gv81pzqw"; depends=[boot]; }; - cit = derive2 { name="cit"; version="2.0"; sha256="16i3riv5fnaih240hkr8q9zpgxjr26abv9mg6spi6cs95ny2rybs"; depends=[]; }; + cit = derive2 { name="cit"; version="2.1"; sha256="1kiph7znr9fiq704wfbms6hsl4shxfqijrlh4dhmik9x9m8sj538"; depends=[]; }; citbcmst = derive2 { name="citbcmst"; version="1.0.4"; sha256="1zkd117h9nahwbg5z6byw2grg5n3l0kyvv2ifrkww7ar30a2yikl"; depends=[]; }; citccmst = derive2 { name="citccmst"; version="1.0.2"; sha256="1b7awn1hjckxisfdi4ck697hwd4a5sqklwi7xzh6kgqhk9pv7vjn"; depends=[]; }; + citr = derive2 { name="citr"; version="0.2.0"; sha256="1nzn0yw74k6zkwzb6spfzqkj3cbx6ry6ypbsnhy6w2flabnnvy4v"; depends=[assertthat curl miniUI RefManageR rstudioapi shiny yaml]; }; cjoint = derive2 { name="cjoint"; version="2.0.4"; sha256="0c2vs5zbw83r7jlm6kwjylyd5yjnyz5qaqnk0lh9x54jd0f3nqwv"; depends=[ggplot2 lmtest sandwich survey]; }; ckanr = derive2 { name="ckanr"; version="0.1.0"; sha256="1cvn0cih763f0ppl1y90vnwj3cgqyb7az89sn12nyn2qb6igiqyl"; depends=[httr jsonlite magrittr]; }; clValid = derive2 { name="clValid"; version="0.6-6"; sha256="1l9q7684vv75jnbymaa10md13qri2wjjg7chr1z1m0rai8iq3xxw"; depends=[class cluster]; }; cladoRcpp = derive2 { name="cladoRcpp"; version="0.14.4"; sha256="0d4vl7xrrwbhhx56ymw52rb5svw9nskxdya4dl04lw1qxc45p4jy"; depends=[Rcpp RcppArmadillo]; }; - clarifai = derive2 { name="clarifai"; version="0.2"; sha256="10mbgdg5hpdx6v84zn1j2gfl7rj2cl0dizxplf764qrc6rfhvsxm"; depends=[curl jsonlite]; }; + clarifai = derive2 { name="clarifai"; version="0.4.0"; sha256="0qlv4aj5vlrrc0h6gyryly33rfz5jz7cahw5l6qdbba4dibrkajm"; depends=[curl jsonlite]; }; class = derive2 { name="class"; version="7.3-14"; sha256="173b8a16lh1i0zjmr784l0xr0azp9v8bgslh12hfdswbq7dpdf0q"; depends=[MASS]; }; classGraph = derive2 { name="classGraph"; version="0.7-5"; sha256="19jb9jr1gfg4karymrbilh0zjrlsczhy2q03x5b0jxnh4ykhxfj8"; depends=[graph Rgraphviz]; }; classInt = derive2 { name="classInt"; version="0.1-23"; sha256="07anmwmchri4ppl01y041zh3xdqsdwzv4n5jpr3crmpk39qwwhzq"; depends=[class e1071]; }; + classifierplots = derive2 { name="classifierplots"; version="1.3.2"; sha256="18xsjsfsr4dz791b0ap8lcbk7mnr3i0pspbal6n5ah864ngqvbvn"; depends=[caret data_table ggplot2 gridExtra png Rcpp ROCR]; }; classifly = derive2 { name="classifly"; version="0.4"; sha256="0mw1vcas0gr1r4yvh0j02zhk7kp5342r0bhhg776hqgqdczgh5zj"; depends=[class plyr]; }; classify = derive2 { name="classify"; version="1.3"; sha256="0134h12h6v06d7ldj9qgqjhh5f5ap98pvr0v6d4k8dqndnn0pggy"; depends=[ggplot2 lattice plyr R2jags Rcpp reshape2]; }; classyfire = derive2 { name="classyfire"; version="0.1-2"; sha256="0rar3mi2m1wf14lmahjbpdh1jlnisvgsbx86xbqlb8c0f8zfzxq3"; depends=[boot e1071 ggplot2 neldermead optimbase snowfall]; }; - cleangeo = derive2 { name="cleangeo"; version="0.1-1"; sha256="1bahj4lf7fvf8qlbl7g2jh9a4vqr62llg43yklm380fky23n04r1"; depends=[maptools rgeos sp]; }; + cleanEHR = derive2 { name="cleanEHR"; version="0.1"; sha256="1ppjg72cfh9kdwl8kk7zxyr529xqcwpfcl5lisy7hgpqirma52qn"; depends=[data_table ggplot2 knitr pander Rcpp XML yaml]; }; + cleanNLP = derive2 { name="cleanNLP"; version="0.24"; sha256="0j4im6518sqdyfwbfabc1q3g01nqfpshznq033193g9b519792z3"; depends=[dplyr magrittr RCurl readr rJava]; }; + cleangeo = derive2 { name="cleangeo"; version="0.2-1"; sha256="05zzp0dbkpljc9jcx05pdlkdwfbrh6h0l2zksq3cpaw5bvz5g1pl"; depends=[maptools rgeos sp]; }; + cleanr = derive2 { name="cleanr"; version="1.1.3"; sha256="0vf2c2inb729kzmpxaznqa2zwj80j1ix9198gc36zq41ag5pd7jk"; depends=[checkmate]; }; clere = derive2 { name="clere"; version="1.1.4"; sha256="1nk3chcnaa4y1c5rr6c3bapvi106ikbk9grqcq6s6j0imny1jp4a"; depends=[lasso2 Rcpp RcppEigen]; }; - clhs = derive2 { name="clhs"; version="0.5-5"; sha256="0p1w5sb27qk609azywzz17c4f2cgdkrl88gckgrd3lg1cfa9vl7d"; depends=[ggplot2 plyr raster reshape2 scales sp]; }; - clickstream = derive2 { name="clickstream"; version="1.1.7"; sha256="0j87209pir852djga5dr1rdj6i554v4bpvhkk1i843lkfsfz4v12"; depends=[arules data_table igraph linprog plyr Rsolnp]; }; - clifro = derive2 { name="clifro"; version="2.4-1"; sha256="0yi8kgw4l2pxaa340avwfswfjsngdkfp3kv4cnnw9gr7y57pjaz1"; depends=[ggplot2 lubridate RColorBrewer RCurl reshape2 scales selectr XML]; }; + clhs = derive2 { name="clhs"; version="0.5-6"; sha256="0m7pw655d6jidrppk1z84z35n93k1alwq43jh28lf81ydw8finma"; depends=[ggplot2 plyr raster reshape2 scales sp]; }; + clickR = derive2 { name="clickR"; version="0.2.0"; sha256="01fsaqgc4fxf0p9ww6z3g84ybn5kgj7qyk781flhg7r4s51qmcwv"; depends=[beeswarm ClustOfVar lme4 lmerTest lqmm ordinal ReporteRs survival xtable]; }; + clickstream = derive2 { name="clickstream"; version="1.1.9"; sha256="0hg8ywnm82r5787qal19rcg7q0jvvrw6ifaya84p6sazwqwy8m4g"; depends=[arules data_table igraph linprog plyr Rsolnp]; }; + clifro = derive2 { name="clifro"; version="3.1-2"; sha256="0fa1r4rsl3cq8dmy0jxalga9qzhiwpdhkzmjgx2hfbkgklfdnr40"; depends=[ggplot2 lubridate RColorBrewer RCurl reshape2 scales selectr XML]; }; + clikcorr = derive2 { name="clikcorr"; version="1.0"; sha256="0zdnbcl5q293mmm6pbn4ri7p1q6z6sff74axsb3nyd153v2xamr5"; depends=[mvtnorm]; }; + climatol = derive2 { name="climatol"; version="3.0"; sha256="0wfqs8yk3m6wpm86yfhsg100d4x67bzz1871mxrs69r6ybrh30qx"; depends=[]; }; + climbeR = derive2 { name="climbeR"; version="0.0.1"; sha256="10i74bph7dhv2xj01qdhymlmfwj32lzxivanif11zmzmq9p5bqsw"; depends=[ggplot2]; }; climdex_pcic = derive2 { name="climdex.pcic"; version="1.1-6"; sha256="0dyhqxrma8g4ny4afv6drr885m88q2b8g1n19yy3yjbrbddyz8yl"; depends=[caTools PCICt Rcpp]; }; clime = derive2 { name="clime"; version="0.4.1"; sha256="0qs9i7cprxddg1cmxhnmcfhl7v7g1r519ff2zfipxbs59m5xk9sf"; depends=[lpSolve]; }; - climtrends = derive2 { name="climtrends"; version="1.0.5"; sha256="0pgdx0hhrqpnj3qf37ms7z9fhy4vvgichrpi4vvmin5xksmaczxa"; depends=[]; }; - climwin = derive2 { name="climwin"; version="0.1.2"; sha256="0nin43pi0q62ga710k1b6y5llrmf8aw4xhw5vrl6w01iqmz25v0g"; depends=[evd ggplot2 gridExtra lme4 lubridate MuMIn reshape]; }; + climextRemes = derive2 { name="climextRemes"; version="0.1.2"; sha256="1m9jb8n7df9v4yakgh2ncmaqnhdw1vkhfcg3k6cib07nz69wx98j"; depends=[extRemes]; }; + climtrends = derive2 { name="climtrends"; version="1.0.6"; sha256="01007b0av9kv6rx2kkp5y39xkk5nqsyqbxa5z43qdq5zgf5pwvd9"; depends=[]; }; + climwin = derive2 { name="climwin"; version="1.1.0"; sha256="10dpdv1nm5sxagac6vb2slqkxvpwa6q0jl2fwwkpr9pdmvacp4h4"; depends=[evd ggplot2 gridExtra lme4 lubridate Matrix MuMIn numDeriv plyr RcppRoll reshape]; }; clinUtiDNA = derive2 { name="clinUtiDNA"; version="1.0"; sha256="0x3hb09073gkh60fc8ia0sfk948sm6z6j8sqkz275k4m8ryrabas"; depends=[]; }; - clinfun = derive2 { name="clinfun"; version="1.0.11"; sha256="13qc1kxbxbj9zpxb823vx0nl54pznyna8y0i167h43nvya2lf41l"; depends=[mvtnorm]; }; - clinsig = derive2 { name="clinsig"; version="1.1"; sha256="09h43psdwpd1d9pzl0r7rj08jzahmy4myc06066rdrnqyrjmvr99"; depends=[]; }; - clipr = derive2 { name="clipr"; version="0.2.0"; sha256="0y27k2s562cpva3a19yv5b9p99iympdx3084v59i3478ih9qw23r"; depends=[]; }; - clisymbols = derive2 { name="clisymbols"; version="1.0.0"; sha256="1g68kh1js6nssyzw4lpxp4d2h4rhlayhahaykxw4a4bd67fkw20p"; depends=[]; }; + clinfun = derive2 { name="clinfun"; version="1.0.13"; sha256="0l4brcfr960yplgx63hy6imszk1zy8my6issilx839hvs4d5z7l9"; depends=[mvtnorm]; }; + clinsig = derive2 { name="clinsig"; version="1.2"; sha256="1wgfl9kks57yizrf8z6x7dhmbl3a80q8nnj3a5n2hpc9yr8l9ijf"; depends=[]; }; + clipr = derive2 { name="clipr"; version="0.3.2"; sha256="13g1iwld4xijn5raip71a88vdn51dc056nnqaasb7g00zbbb8jwl"; depends=[]; }; + clisymbols = derive2 { name="clisymbols"; version="1.1.0"; sha256="0idnlx29ps4njiwf4afqzahkpjzz6lam93hxjrr67756k1lw1xjj"; depends=[]; }; clogitL1 = derive2 { name="clogitL1"; version="1.4"; sha256="0m9yrg9mzzfv5qkdf6w55xyrjdghyrf27kk7b4x2gyvwvi5b7dkm"; depends=[Rcpp]; }; + clogitLasso = derive2 { name="clogitLasso"; version="1.0.1"; sha256="1mm815w31n0jvbh2rwq15ja1mzvjaz1x846xq1949aj4pb692zrl"; depends=[foreach lassoshooting]; }; clogitboost = derive2 { name="clogitboost"; version="1.1"; sha256="19wcb7229amlxn6xahxj6pf9rwfm02s7qkxz2yvyhnq95y0clxkm"; depends=[Rcpp]; }; - cloudUtil = derive2 { name="cloudUtil"; version="0.1.10"; sha256="1j86vpd4ngrdpfjk44wb1mp0l88dxia64pjd2idfcd276giplh6s"; depends=[]; }; - clpAPI = derive2 { name="clpAPI"; version="1.2.6"; sha256="1kgzmzf87b0j43ch21anmm2d73bj2d16slmyavpbkdwg72dg1sjb"; depends=[]; }; + cloudUtil = derive2 { name="cloudUtil"; version="0.1.12"; sha256="18g946j00anlk20d0fh01w0xyj1kwyy7jhlgz5a85wmp6s2gkz74"; depends=[]; }; + clpAPI = derive2 { name="clpAPI"; version="1.2.7"; sha256="19bn5d7qjj7g0x17jnh2snymcn2r2skzj35hkhsgcj5r43834f3r"; depends=[]; }; clttools = derive2 { name="clttools"; version="1.3"; sha256="0va9k1b4xsb2sgpxzvid6sa8m6b8i3r4kgghclmb78nnrs480cwi"; depends=[]; }; - clue = derive2 { name="clue"; version="0.3-51"; sha256="1lhjd27lmwfsb7ffnbybv3yvw2mfca3hm03nb6mkk3alh2ncam2g"; depends=[cluster]; }; - clues = derive2 { name="clues"; version="0.5.6"; sha256="1g0pjj4as5wfc7qr3nwkzgxxxp3mrdq7djn8p8qjba6kcdjxak1i"; depends=[]; }; - clusrank = derive2 { name="clusrank"; version="0.1-1"; sha256="0p14lflhg3kjrdsyva2gnx5frs0fpnsn3fnda49paf29ynm3x7w4"; depends=[]; }; + clubSandwich = derive2 { name="clubSandwich"; version="0.2.2"; sha256="1ib6p58w8ax00cpgxcl6hhpig02d0lay9d2abdx084dbiyb45pad"; depends=[sandwich]; }; + clue = derive2 { name="clue"; version="0.3-53"; sha256="1wj23bjsrcn7b74vaqara6vwd6qz0wznyfk9zicm627cxcix7n3x"; depends=[cluster]; }; + clues = derive2 { name="clues"; version="0.5.9"; sha256="0znlsbfmnz5wkp2cswrkjbgchdmmf7h78mv2zwx382m9n9n9hshy"; depends=[]; }; + clusrank = derive2 { name="clusrank"; version="0.5-2"; sha256="168xad5dyz46yxm139q09n9vp1304yrhikxz5bcfzhm3psyv5fbf"; depends=[MASS Rcpp]; }; + clust_bin_pair = derive2 { name="clust.bin.pair"; version="0.0.6"; sha256="0hmj85byw1j1b1crb7nj12wz0rddp5cg21jg1dwg7b0mn5xvy981"; depends=[]; }; clustMD = derive2 { name="clustMD"; version="1.1"; sha256="192li0nx2hwhh5y21xs70vrnzw3wxbzr95f06makaxcrwf4xlp16"; depends=[MASS mclust msm mvtnorm tmvtnorm truncnorm]; }; - clustMixType = derive2 { name="clustMixType"; version="0.1-16"; sha256="1p3i83wrbgs1qpirmmckmpnbbs3p73dl7mh8f724qll761phm8v5"; depends=[]; }; - cluster = derive2 { name="cluster"; version="2.0.3"; sha256="03jfczb3dwg57f164pya0b762xgyswyb9a7s33lw9i0s5dq72ri8"; depends=[]; }; + clustMixType = derive2 { name="clustMixType"; version="0.1-17"; sha256="08drby5ifv8wcww4ns2cma2gyhzwj3x6klvh7fs03wrzn6w78hr0"; depends=[]; }; + clustRcompaR = derive2 { name="clustRcompaR"; version="0.1.0"; sha256="1md1ra18q1iga01q12jyy9va4qyvzlybvbdrdfy2kxhh82w057ww"; depends=[dplyr ggplot2 ppls quanteda tidyr]; }; + cluster = derive2 { name="cluster"; version="2.0.5"; sha256="1bkvqmv8h2c423q9ag2afb6s9j2vcdlxsf559zzbimraphrr2c2b"; depends=[]; }; cluster_datasets = derive2 { name="cluster.datasets"; version="1.0-1"; sha256="0i68s9305q08fhynpq24qnlw03gg4hbk4184z3q3ycbi8njpr4il"; depends=[]; }; - clusterCrit = derive2 { name="clusterCrit"; version="1.2.6"; sha256="1jy2xxh9i4dsdiqmkl35xpdmq6vyf3alh4d0npzgrwmjl7516pd3"; depends=[]; }; + clusterCrit = derive2 { name="clusterCrit"; version="1.2.7"; sha256="13smdm8dmp4795qqn8an3k22l7xs4i4kgazyjzxdbzkg742akk7q"; depends=[]; }; clusterGeneration = derive2 { name="clusterGeneration"; version="1.3.4"; sha256="1ak8p2sxz3y9scyva7niywyadmppg3yhvn6mwjq7z7cabbcilnbw"; depends=[MASS]; }; clusterGenomics = derive2 { name="clusterGenomics"; version="1.0"; sha256="127hvpg06is4x486g1d5x7dfkrbk7dj35qkds0pggnqxkq3wsc1c"; depends=[]; }; clusterPower = derive2 { name="clusterPower"; version="0.5"; sha256="1g2qpvizyk4q3qlgvar436nrfqxwp5y8yi2y6rch9ak5mbg3yzqb"; depends=[lme4]; }; clusterRepro = derive2 { name="clusterRepro"; version="0.5-1.1"; sha256="0vsf6cq6d51a4w23ph8kdz2h8dfpzyd6i85049p2wakn1kdvkz5p"; depends=[]; }; - clusterSEs = derive2 { name="clusterSEs"; version="2.1"; sha256="1r1cwnx7kdisq6v9ssr0z270yhfkkq3jyg2rq81l43dx7a6yv04y"; depends=[AER Formula lmtest mlogit plm sandwich]; }; - clusterSim = derive2 { name="clusterSim"; version="0.44-2"; sha256="1xf3byri6mwlf89n896bxffmf3c6yqqh992npg9sqznx955hcggv"; depends=[ade4 cluster e1071 MASS R2HTML rgl]; }; + clusterSEs = derive2 { name="clusterSEs"; version="2.3.2"; sha256="1pxfvmkgx45xp7q2fdd34zd2f0snyq6mazqsd1nqrda7791a494f"; depends=[AER Formula lmtest mlogit plm sandwich]; }; + clusterSim = derive2 { name="clusterSim"; version="0.45-1"; sha256="0wmhsz71rspg98smdp08q3jgdkldqn2l3szwdl70lz93kyls3ivv"; depends=[ade4 cluster e1071 MASS modeest R2HTML rgl]; }; clusterfly = derive2 { name="clusterfly"; version="0.4"; sha256="0mxpn7aywqadyk43rr7dlvj0zjcyf4q7qbqw5ds38si7ik34lkrg"; depends=[e1071 plyr reshape2 rggobi RGtk2]; }; + clusterhap = derive2 { name="clusterhap"; version="0.1"; sha256="1ic6588mqp146jsvrxlxk449zw4n81xixgrny9r29497z7hg5a1m"; depends=[]; }; clustering_sc_dp = derive2 { name="clustering.sc.dp"; version="1.0"; sha256="0cppka7613cbjjf1q2yp6fln511wbqdhh8d4gs6p0fbq379kzmvc"; depends=[]; }; + clusternomics = derive2 { name="clusternomics"; version="0.1.0"; sha256="054jbzgz53b1vbv5492zrhywjly8pwiiy4j11qsb20sfz4j951h6"; depends=[magrittr MASS plyr]; }; clustertend = derive2 { name="clustertend"; version="1.4"; sha256="1aqg8cy1hk3lmzvyqh9qc1mcknrva2i0c77hyd0yff9whz80ik4j"; depends=[]; }; clusteval = derive2 { name="clusteval"; version="0.1"; sha256="1ld0bdl4fy8dsfzm3k7a37cyxc6pfc9qs31x4pxd3z5rslghz7rj"; depends=[mvtnorm Rcpp]; }; - clustrd = derive2 { name="clustrd"; version="0.1.2"; sha256="022lzp1wvbaa20d8hribgq9miy6i7jxm5m1p3p52h9b7bzga3q6g"; depends=[corpcor e1071 ggplot2 irlba]; }; + clustrd = derive2 { name="clustrd"; version="1.1.0"; sha256="0l1mllgqqlkywhhp1a24hlvsiwkk26k58c9rg9m5pagb623w73p4"; depends=[cluster corpcor dplyr dummies fpc GGally ggplot2 ggrepel plyr]; }; clustsig = derive2 { name="clustsig"; version="1.1"; sha256="0n5nf712vsa8zb0c2lv4gjqsgva62678vjngr9idgswb73shxm8v"; depends=[]; }; clustvarsel = derive2 { name="clustvarsel"; version="2.2"; sha256="1b38y9zn4xbiddm5m5ki307i5yih2nadhnpnsizz91jkcqdnjhw1"; depends=[BMA foreach iterators mclust]; }; clv = derive2 { name="clv"; version="0.3-2.1"; sha256="1qgp2qhblg6ysyrlg0ad169ahwhcyn5pvsqzdlqj700y1k7wl7mc"; depends=[class cluster]; }; cmaes = derive2 { name="cmaes"; version="1.0-11"; sha256="1hwf49d1m660jdngqak9pqasysmpc4jcgr8m04szwbyzyy6xrm5k"; depends=[]; }; - cmaesr = derive2 { name="cmaesr"; version="1.0.1"; sha256="1apka7891agpz2v3smv7m5sa09myjrxq3w3jzj28j2fn4cgfxn47"; depends=[BBmisc checkmate ggplot2 ParamHelpers smoof]; }; + cmaesr = derive2 { name="cmaesr"; version="1.0.3"; sha256="03zx2nrw24wmmjjpyh8pswasjjq0amf0g375fm2b3s111dx8fbj9"; depends=[BBmisc checkmate ggplot2 ParamHelpers smoof]; }; cmm = derive2 { name="cmm"; version="0.8"; sha256="1661v2lzxgf4s37wdsrnbsvqwppcr7mbp70i1xsysfzki1z6xr19"; depends=[]; }; - cmna = derive2 { name="cmna"; version="0.1.2"; sha256="0iqr4fxjhi243ccb2kbs75pgxr66zlbp5005d5qsvzyn0qxnaa62"; depends=[]; }; + cmna = derive2 { name="cmna"; version="0.3.0"; sha256="0ax27y1h0pz8i5ckjcrbgpav6m1srym6av94bvy02mv26ida0l8c"; depends=[]; }; cmprsk = derive2 { name="cmprsk"; version="2.2-7"; sha256="1imr3wpnj4g57n2x4ryahl4lk8lvq9y2r7319zv3k82mznha8bcm"; depends=[survival]; }; cmprskQR = derive2 { name="cmprskQR"; version="0.9.1"; sha256="002s6ls670sdzrxgqv9gbl646b675q1gn6dzkngnf6rgcdqwid7n"; depends=[quantreg survival]; }; cmrutils = derive2 { name="cmrutils"; version="1.3"; sha256="0zjc0bwp2p03hmnj3zjw7800pcdw8b8161y68npyp3hya0s4i9x0"; depends=[chron]; }; - cmsaf = derive2 { name="cmsaf"; version="1.6.1"; sha256="0wsl37i7vwfh1mqrll4ff7qr8wc0mr5f8m6w4r41qihda1bs4y0c"; depends=[fields ncdf4 raster sp]; }; + cmsaf = derive2 { name="cmsaf"; version="1.7.1"; sha256="0q954akb9myb64p7x2zplfljkzqnakx74w93h1n2kfzx7bbh482h"; depends=[fields ncdf4 raster sp]; }; cmvnorm = derive2 { name="cmvnorm"; version="1.0-3"; sha256="0810kzg78yaxzniq59a4swvdk9qxp37ja52f5n1zssgn0cwz1vk9"; depends=[elliptic emulator]; }; cna = derive2 { name="cna"; version="1.0-3"; sha256="1iy0ispazhib30kh5wp3jziiyf0992nrdklrq80n0w3zhjyi21rh"; depends=[]; }; cncaGUI = derive2 { name="cncaGUI"; version="1.0"; sha256="1v55kvrc05bsm1qdyfw3r3h64wlv3s6clxbr8k512lfk99ry42kn"; depends=[MASS plotrix rgl shapes tcltk2 tkrplot]; }; cnmlcd = derive2 { name="cnmlcd"; version="1.0-0"; sha256="0kbq01qrmpn133v18rjphhznpnj8g6dcn1lrbsjykhxkqz086s36"; depends=[lsei]; }; - coala = derive2 { name="coala"; version="0.4.0"; sha256="1ssh0fg4h6v4p4f9184qpwbn8830b9mlvjq73aq67my46sx7i2jh"; depends=[assertthat R6 Rcpp RcppArmadillo rehh scrm]; }; + coRanking = derive2 { name="coRanking"; version="0.1.3"; sha256="1ss00l0c99fi9p6gcimb31nrl5iflps6lvplnjjqwcqjkb2pjh9p"; depends=[Rtsne scatterplot3d]; }; + coala = derive2 { name="coala"; version="0.5.0"; sha256="1yk2cfv73wng1bm00v1xfd208lvc9r7nx1w2rgdgw9m9yv0mw89f"; depends=[assertthat digest R6 Rcpp RcppArmadillo rehh scrm]; }; coalescentMCMC = derive2 { name="coalescentMCMC"; version="0.4-1"; sha256="0xxv1sw5byf84wdypg5sfazrmj75h4xpv7wh4x5cr9k0vgf80b3s"; depends=[ape coda lattice Matrix phangorn]; }; coarseDataTools = derive2 { name="coarseDataTools"; version="0.6-3"; sha256="0f1fkpmqq142yrqzbqv11s5q4jkq7dilmrllcns871hc6vah6ikd"; depends=[MCMCpack]; }; - cobs = derive2 { name="cobs"; version="1.3-1"; sha256="18dfc767zfipp4h4q7lgk5yp1c63lb9myc6bg3jkzr1v1xwbhwqk"; depends=[quantreg SparseM]; }; - cocor = derive2 { name="cocor"; version="1.1-2"; sha256="0lkj4rjny2sv4sbvrh159zw66h99rkl1zvncb3g8f17zizmvvfsm"; depends=[]; }; + cobalt = derive2 { name="cobalt"; version="1.3.1"; sha256="00zgq2c3vkrx4q8wp43giwid4778j9wxcjfn3nkbwlgrsswm0adb"; depends=[ggplot2]; }; + cobs = derive2 { name="cobs"; version="1.3-2"; sha256="1kqyh2c0jlb6gbpgwdk0dh5sh6ziw9wyxvxgdk4n4j8d0klb9kx1"; depends=[quantreg SparseM]; }; + cocor = derive2 { name="cocor"; version="1.1-3"; sha256="106zyrrypil8jyg0pva5zj4hgb53z81nca3d0mh2q3j55zq3wl12"; depends=[]; }; + cocoreg = derive2 { name="cocoreg"; version="0.1.0"; sha256="1x6ffwh8z6nj867wxnvq8qjq7rx0j3swdnb12zv917s0y54dwncx"; depends=[abind CCAGFA combinat e1071 ggplot2 glmnet gridExtra MASS multiway pls reshape RGCCA]; }; cocorresp = derive2 { name="cocorresp"; version="0.3-0"; sha256="1r1ssz0cip1gk52nkbr1kpz8gwrg6lwri8ymk41xj2adlsp576v2"; depends=[vegan]; }; cocron = derive2 { name="cocron"; version="1.0-1"; sha256="0dl14y9v9kndy5gzhhbhq3f31ja724y1hra40givy6bij7h2cj30"; depends=[]; }; - coda = derive2 { name="coda"; version="0.18-1"; sha256="03sc780734zj2kqcm8lkyvf76fql0jbfhkblpn8l58zmb6cqi958"; depends=[lattice]; }; + coda = derive2 { name="coda"; version="0.19-1"; sha256="14a4a8df4ygj05h37chmdn8kzcqs07fpbflxfrq530563mrza7yl"; depends=[lattice]; }; codadiags = derive2 { name="codadiags"; version="1.0"; sha256="1x243pn6qnkjyxs31h1hxy8x852r0fc952ww77g40qnrk8qw79xg"; depends=[coda]; }; - codep = derive2 { name="codep"; version="0.5-1"; sha256="1ral0f2yb7fa5j216r4hlssijim26q4mr2kdfllf4xn66pssf32y"; depends=[]; }; - codetools = derive2 { name="codetools"; version="0.2-14"; sha256="0y9r4m2b8xgavr89sc179knzwpz54xljbc1dinpq2q07i4xn0397"; depends=[]; }; - codingMatrices = derive2 { name="codingMatrices"; version="0.2.0"; sha256="0gysa26nzrcf9zhlc2vb2banh3yhv53hdbx1an9rjb3rd3n7xh4y"; depends=[fractional Matrix]; }; - codyn = derive2 { name="codyn"; version="1.0.1"; sha256="1r3plblrpdsfx9ng468zjr6imhra5x2xxqivrnw3nmnfiipmik68"; depends=[assertthat]; }; + codep = derive2 { name="codep"; version="0.6-5"; sha256="18da81wja7z9gnn11xiwi7cg43mrj4w2kjkk8s780krbycnfsn5p"; depends=[]; }; + codetools = derive2 { name="codetools"; version="0.2-15"; sha256="0h7sjmvvsi35041jp47cxhsqzgf1y8jrw6fxii7n26i8g7nrh1sf"; depends=[]; }; + codingMatrices = derive2 { name="codingMatrices"; version="0.2.1"; sha256="00kvvsz1l603v36clsz7jm1yiwl07vcyhv4ghy0pjlz8hcfaqmna"; depends=[fractional Matrix]; }; + codyn = derive2 { name="codyn"; version="1.1.0"; sha256="0s8ssaq59vddilz0fin9sgr8fir70c220cffbsy2l0qn34q48627"; depends=[assertthat permute]; }; coefficientalpha = derive2 { name="coefficientalpha"; version="0.5"; sha256="0pfw64z7f0gp415nn7519rcw829a7wnwnjx94sc55jsvgb1di3kc"; depends=[lavaan rsem]; }; coefplot = derive2 { name="coefplot"; version="1.2.4"; sha256="0phpz4fvvxvpaybp4q1s69qxcpdzj8qxambivncps101mz7jj3sq"; depends=[ggplot2 plyr reshape2 useful]; }; - coenocliner = derive2 { name="coenocliner"; version="0.2-1"; sha256="0y756x8c4psv972wgi6alfn5sd5zybkp2pf68kglcn6w9xd62b0k"; depends=[]; }; - coenoflex = derive2 { name="coenoflex"; version="2.1-0"; sha256="0gh4pr5h3kp5v7bx1gif0j4wj98aqs1wm4mcmv7z7q66c007q50m"; depends=[mgcv]; }; + coenocliner = derive2 { name="coenocliner"; version="0.2-2"; sha256="0r4h0r3av2d1cxmjpwaabjn807626pzqnra2x542wdnnf7h8nmdf"; depends=[]; }; + coenoflex = derive2 { name="coenoflex"; version="2.2-0"; sha256="06f75spl4wkbgicm0bksnid2lb1gkvi05915wn5y4km45d82fkkr"; depends=[mgcv]; }; coexist = derive2 { name="coexist"; version="1.0"; sha256="15ydhrx996i6caa0360c2bgn2zvgwfg5wdhsqq1gvrggs15w7nml"; depends=[]; }; cofeatureR = derive2 { name="cofeatureR"; version="1.0.1"; sha256="1nxdi97b37pw5xr6cib8hjgziazmy9lfbjgixn9ayacvdhkjs7ib"; depends=[dplyr ggplot2 lazyeval]; }; - coin = derive2 { name="coin"; version="1.1-2"; sha256="0wwkw0sslfp8ass83rh2d9qhzz2p69gv0c6wi778nanjvaj533x5"; depends=[modeltools multcomp mvtnorm survival]; }; + coin = derive2 { name="coin"; version="1.1-3"; sha256="0db000pks4vr5jr765zagd5amqk0l4qxqg67vwwkbj03b71fr24b"; depends=[modeltools multcomp mvtnorm survival]; }; + cointReg = derive2 { name="cointReg"; version="0.2.0"; sha256="0n4s809avhlrmrjdqzc2s752m7x96c4432gnjd4qv77r2nns7dw4"; depends=[checkmate MASS matrixStats]; }; + cointmonitoR = derive2 { name="cointmonitoR"; version="0.1.0"; sha256="0rsacvib9prgb199m5ndi0zlgfsvf1giqc5s41wp0yvxdxjdq5lw"; depends=[cointReg matrixStats]; }; cold = derive2 { name="cold"; version="1.0-4"; sha256="00rl2h4pirzvgwi28pr94kkn233wvm2z8yyfsz6andbkjsihp6jw"; depends=[]; }; + colf = derive2 { name="colf"; version="0.1.2"; sha256="1xbmc32rp0xlj73krwhqn2ji5xa9kd2anaw88mvi5psdi3d2y1np"; depends=[nlmrt]; }; + collUtils = derive2 { name="collUtils"; version="1.0.5"; sha256="0gbk3lrb2lwq2ixrpcngng6qz6axjb4iyqy5606x1zmjm71c060p"; depends=[Rcpp rJava]; }; coloc = derive2 { name="coloc"; version="2.3-1"; sha256="1j3m9afpkm0bzib38yqvk85b6s6l56s6j2ni96gii4a06r87ig60"; depends=[BMA colorspace MASS]; }; colorRamps = derive2 { name="colorRamps"; version="2.3"; sha256="0shbjh83x1axv4drm5r3dwgbyv70idih8z4wlzjs4hiac2qfl41z"; depends=[]; }; + colorSpec = derive2 { name="colorSpec"; version="0.5-3"; sha256="0ffn1x9763xzhfsm5vgkvgpm2a792bqx54ra2x4vda7m78lb6nqr"; depends=[MASS]; }; coloredICA = derive2 { name="coloredICA"; version="1.0.0"; sha256="1xj4dsrwgqzm2644nk3y8nj47m036b4ylh6v60jccj3707spb32r"; depends=[MASS]; }; colorfulVennPlot = derive2 { name="colorfulVennPlot"; version="2.4"; sha256="01b3c060fbnap78h9kh21v3zav547ak2crdkvraynpd2096yk51w"; depends=[]; }; colorhcplot = derive2 { name="colorhcplot"; version="1.0"; sha256="1hxh09sg9mdbfz4vx2z9wyx9xs5a82l8sw1wbwaa717a6q3ayjyj"; depends=[]; }; - colorscience = derive2 { name="colorscience"; version="1.0.2"; sha256="0d4bn1s7jmywh528nm3fpra3557v6nxr594q42phw2nq58gscf3z"; depends=[Hmisc munsellinterpol pracma sp]; }; - colorspace = derive2 { name="colorspace"; version="1.2-6"; sha256="0y8n4ljwhbdvkysdwgqzcnpv107pb3px1jip3k6svv86p72nacds"; depends=[]; }; + colormap = derive2 { name="colormap"; version="0.1.4"; sha256="0032ji9n8pivl70jppq989fgg781wil8zag7pfl1hs9xrpin8asy"; depends=[ggplot2 stringr V8]; }; + colorplaner = derive2 { name="colorplaner"; version="0.1.3"; sha256="0mqqk59yjklbc7a0n7jgyhj458622dfdsa1101a5w6kwppbjvnfg"; depends=[digest ggplot2 gtable scales]; }; + colorr = derive2 { name="colorr"; version="1.0.0"; sha256="1wwrgb9fc9gzxxwxrdrkwwrmhqqllv29wr4q8y1shj9d3nzcpwmh"; depends=[]; }; + colorscience = derive2 { name="colorscience"; version="1.0.4"; sha256="19943gnzszh13mg74clbkhbc6xg4259ilqk19mrv8d6ml6f6wspl"; depends=[Hmisc munsellinterpol pracma sp]; }; + colorspace = derive2 { name="colorspace"; version="1.3-2"; sha256="0d1ya7hx4y58n5ivwmdmq2zgh0g2sbv7ykh13n85c1355csd57yx"; depends=[]; }; colortools = derive2 { name="colortools"; version="0.1.5"; sha256="0z9sx0xzfyb5ii6bzhpii10vmmd2vy9vk4wr7cj9a3mkadlyjl63"; depends=[]; }; - colourlovers = derive2 { name="colourlovers"; version="0.2.0"; sha256="17macf5nby286n80pfsha54r3q3idpfhkm2w1c8hbsh2rxfh6r1d"; depends=[jsonlite png XML]; }; + colourlovers = derive2 { name="colourlovers"; version="0.2.2"; sha256="0fgxs73l4g1lnmc2q613ykxxrbmvq6w66zpidccqg64wa9cy5yhm"; depends=[jsonlite png XML]; }; + colourpicker = derive2 { name="colourpicker"; version="0.3"; sha256="0sxxllfwdbdc283nk9b82xrvb6xali14c6qfywm2qck0k8jh7ppy"; depends=[ggplot2 htmltools htmlwidgets miniUI shiny shinyjs]; }; + colourvision = derive2 { name="colourvision"; version="0.1"; sha256="1v9qipx1rglga0mdw97xbdbq1mgx7avif7a6gi1xh9gvw408x25c"; depends=[rgl]; }; + colr = derive2 { name="colr"; version="0.1.900"; sha256="0ilz1y0jd2vgyh81g3dwx2l64sir6z6sgmqx7lnvr1hafsqnwfc8"; depends=[]; }; comato = derive2 { name="comato"; version="1.0"; sha256="03jnvv0sczy13r81aljhj9kv09sl5hrs0n5bn3pdi7ba64zgbjiw"; depends=[cluster clusterSim gdata igraph lattice Matrix XML]; }; combinat = derive2 { name="combinat"; version="0.0-8"; sha256="1h9hr88gigihc4na7lb5i7rn4az1xa7sb34zvnznaj6pdrmwy4qm"; depends=[]; }; + combiter = derive2 { name="combiter"; version="0.1.0"; sha256="1wzrz2wc4j4inn078id6jr1585pl62r8ym8cc3vmg4acq2klm93c"; depends=[iterators itertools Rcpp]; }; comclim = derive2 { name="comclim"; version="0.9.4"; sha256="0m6ynccscsrrq70p0drwrwxp4skc630kv1l5smh48pi8kagahj1g"; depends=[]; }; cometExactTest = derive2 { name="cometExactTest"; version="0.1.3"; sha256="08ck1cv5apzn379j6mm2gmhm4qj18418crmqbbp46d80waf0ghxq"; depends=[dplyr]; }; - comf = derive2 { name="comf"; version="0.1.1"; sha256="0ynqyfzj9nnslyi5h4mciyrk8mlf0zg1j9z6liqjld4f2c1zm0al"; depends=[]; }; + comf = derive2 { name="comf"; version="0.1.6"; sha256="1dfba8i08gc319ybqhfs96wa2mp0ndh4rrkv9i432gc56p4kgapr"; depends=[plyr]; }; commandr = derive2 { name="commandr"; version="1.0.1"; sha256="1d6cha5wc1nx6jm8jscl7kgvn33xv0yxwjf6h3ar3dfbvi4pp5fk"; depends=[]; }; commentr = derive2 { name="commentr"; version="1.0.4"; sha256="0anlcbk8rj0yr8i23qmr6v5ws0695nkc3mvgr6pnq1fg2d4c4brj"; depends=[stringr]; }; - commonmark = derive2 { name="commonmark"; version="0.7"; sha256="11a6v8dsrhb2c5ydy6qsvdhn9vwjm4q8y9wjmbp6sc6zngfqqk6a"; depends=[]; }; + commonmark = derive2 { name="commonmark"; version="1.1"; sha256="0dh56cspy8wkvbz0602vp050qxd70wm063lqflfk2zddcrv9lhc2"; depends=[]; }; compHclust = derive2 { name="compHclust"; version="1.0-2"; sha256="1h39krvz516xwsvn5987i1zbzan8vx2411qz6dad112hpss0vyk9"; depends=[]; }; compactr = derive2 { name="compactr"; version="0.1"; sha256="0f2yds6inmx0lixj08ibqyd2i61l2cbg1ckgpb8dl2q7kcyyd6mx"; depends=[]; }; compare = derive2 { name="compare"; version="0.2-6"; sha256="0k9zms930b5dz9gy8414li21wy0zg9x9vp7301v5cvyfi0g7xzgw"; depends=[]; }; compareC = derive2 { name="compareC"; version="1.3.1"; sha256="0dachfr23lps2jj1y5gc958k54vskmww84gdgk4amihsdgjsnphg"; depends=[]; }; - compareDF = derive2 { name="compareDF"; version="1.0.0"; sha256="1dxqj3zd8a7261q1692sj11gxnizd82wgc24j73b94xkfk0iiv74"; depends=[dplyr tidyr]; }; - compareGroups = derive2 { name="compareGroups"; version="3.2"; sha256="0p4xaxjxyld5a0i0z1bzrbqz9zzlk0pz0qy0pkpfcq4czpyfv4sz"; depends=[epitools gdata HardyWeinberg Hmisc knitr rmarkdown SNPassoc survival xtable]; }; + compareDF = derive2 { name="compareDF"; version="1.1.0"; sha256="1597xmq857jf4b67k7y869gbflad89rxfvrq8m0gp1wd21wv8z1h"; depends=[dplyr htmlTable tidyr]; }; + compareGroups = derive2 { name="compareGroups"; version="3.2.3"; sha256="0sliphw8yxx93qaf6pk405rqbfnpixjx8yazzjqiird6bm746i9n"; depends=[epitools gdata HardyWeinberg Hmisc knitr rmarkdown SNPassoc survival xtable]; }; compareODM = derive2 { name="compareODM"; version="1.2"; sha256="019hq8j56asjvh4x1p65785mf38xr05j3by0749gl9k9yl8645da"; depends=[XML]; }; comparison = derive2 { name="comparison"; version="1.0-4"; sha256="0pc462rhk8gr8zrf08ksi315kmhydlp027q5gd40ap5mmhk7rd82"; depends=[isotone]; }; compeir = derive2 { name="compeir"; version="1.0"; sha256="1bb5459wcqpjic2b9kjn0l0qdn7sqmmx34hdb2aqg80q22mhx5dv"; depends=[etm lattice]; }; compendiumdb = derive2 { name="compendiumdb"; version="1.0.3"; sha256="0glaqlzz5wr14yfhka1y7yw5ha6yc4waw61msbz0vkwj5z2hd2hk"; depends=[Biobase GEOquery RMySQL]; }; + compete = derive2 { name="compete"; version="0.1"; sha256="1b1320jw8pcnjkzb0lr8j6d3z7yhlq31gszd79wdcmwnpzap9k0z"; depends=[igraph sna]; }; + complexity = derive2 { name="complexity"; version="1.0.0"; sha256="15wdlrc8ng1zxgp3gi8d1zfy366mv9m4p643ia7vdcgqv3icq7fc"; depends=[combinat]; }; + complexplus = derive2 { name="complexplus"; version="2.0"; sha256="05b36gql6fqcairwpxvis9vllpvmpgv6rg69zd8vabl5xsgv8q44"; depends=[expm Matrix]; }; complmrob = derive2 { name="complmrob"; version="0.6.1"; sha256="1dr80r1p05h3mlnjbgh6kfw86np8y2bhy9yi5qydv85w52k133n1"; depends=[boot ggplot2 robustbase scales]; }; compoisson = derive2 { name="compoisson"; version="0.3"; sha256="0v5dl7xydqi4p97nipn4hyhpq2gghmx81ygvl0vc8b65jhq89y0p"; depends=[MASS]; }; compositions = derive2 { name="compositions"; version="1.40-1"; sha256="1hn139g86bc1q3dj6kj9f21042v4x0xgrp4ni1zvx1zx8xmy3h8b"; depends=[bayesm energy robustbase tensorA]; }; - compound_Cox = derive2 { name="compound.Cox"; version="2.0"; sha256="1mid09h3xp7p33g371gbghr665qnny1rvi20ha8rv04d928l2r7a"; depends=[numDeriv survival]; }; + compound_Cox = derive2 { name="compound.Cox"; version="3.2"; sha256="028mpal6gdrxgw08hxhsl4yvc9plj0bvndb48fyrzpj8kmk5dibv"; depends=[numDeriv survival]; }; compute_es = derive2 { name="compute.es"; version="0.2-4"; sha256="1b5i8z66zbag0vdv98mmpwmizpm68vc3ajh0n3q94zdcmhcbx12d"; depends=[]; }; + concatenate = derive2 { name="concatenate"; version="1.0.0"; sha256="1kvsw7vwa3hn97ff7r6z21h5ajs74azwv2dk4pzgyaasnbp778hw"; depends=[]; }; + conclust = derive2 { name="conclust"; version="1.1"; sha256="1k9y1mniy7s51dmm5ia693k72s2vxk5bznxxf74s7mx9n3mg2i8r"; depends=[]; }; concor = derive2 { name="concor"; version="1.0-0.1"; sha256="0hjyvi6p16cyrmq0bq7fph1r5f3adp7zpf123wkm5bkjnc5122k0"; depends=[]; }; concordance = derive2 { name="concordance"; version="1.6"; sha256="0pb4mndrh1nimf59ajjcydlvc79nm6p7c219iymkn0b1hbrnx7lf"; depends=[]; }; - concreg = derive2 { name="concreg"; version="0.5"; sha256="0psvnirl5rqicyzxs9sivh23bzzwdgviqczdl2in2gnrvdiw7m6f"; depends=[survival]; }; + concreg = derive2 { name="concreg"; version="0.6"; sha256="1ncs9cpviv5kd49hahlhi7wn2yk70msi22qv8fw91hf81ccimlp2"; depends=[survival]; }; cond = derive2 { name="cond"; version="1.2-3"; sha256="0y7m7valk7zn40y62348czmdvfkx59il9sl6wy565lzqfiimd9ps"; depends=[statmod survival]; }; condGEE = derive2 { name="condGEE"; version="0.1-4"; sha256="0mqj2pc91n8h3arpd4b9f7ndbcnai21c67is22qg22wj7vhhs87h"; depends=[numDeriv rootSolve]; }; condMVNorm = derive2 { name="condMVNorm"; version="2015.2-1"; sha256="04563jljnjhbiaiq33gn5dxjfvv05xp3lhl3w942v0smy0cdhrh4"; depends=[mvtnorm]; }; - condformat = derive2 { name="condformat"; version="0.2.0"; sha256="07d79l0m6cbvxrj0p8fi8v7blpapanl7hzhkvg4npyz2xjvy6bjk"; depends=[assertthat dplyr htmlTable knitr lazyeval scales]; }; + condSURV = derive2 { name="condSURV"; version="2.0.1"; sha256="0xjpypc4fzrnfjcznyc2bslkkza4fib8nx8ff2j7xh2nf84lk3f1"; depends=[doParallel doRNG foreach KernSmooth np survival]; }; + condformat = derive2 { name="condformat"; version="0.5.0"; sha256="0cxayvw5is3b2bwfyjd2465q45dx1w1dqhaa10gld0b2336i7hkz"; depends=[dplyr gplots htmlTable knitr lazyeval rmarkdown scales]; }; + condir = derive2 { name="condir"; version="0.1.1"; sha256="133598h1ga4jyr77lchnby6m8bh3adq6s38cgw45q4fyvzad4qds"; depends=[BayesFactor effsize knitr psych shiny xtable]; }; + conditions = derive2 { name="conditions"; version="0.1"; sha256="0vhqkbsil3qfvrz7924i3wvjknw69cp27g7ayapf6w94bbggx4x8"; depends=[]; }; condmixt = derive2 { name="condmixt"; version="1.0"; sha256="05q1fj7akf6lsq9rbcqqkzlx82jvk6mlvmwx6jzk8j228fwqmg90"; depends=[evd]; }; - condvis = derive2 { name="condvis"; version="0.2-1"; sha256="1gbfzgim9dp79244m2550slgd365aafmcy75klh4z32s6dl4rnvd"; depends=[MASS]; }; - coneproj = derive2 { name="coneproj"; version="1.9"; sha256="17qwix8k7agbxs8g4psyivlr4w4k8v2w0qfhs8a4vsg28z88kr6d"; depends=[Rcpp RcppArmadillo]; }; + condvis = derive2 { name="condvis"; version="0.4-1"; sha256="1fqwybfw5sv4g8kg1yk41ixm5bmzcx7dry1a7ijca5wakchghvya"; depends=[MASS]; }; + coneproj = derive2 { name="coneproj"; version="1.11"; sha256="11hz6xk7b53c1j2c1l0j8c3gh310b59nhr6ln0vibfp30dzxq7xq"; depends=[Rcpp RcppArmadillo]; }; conf_design = derive2 { name="conf.design"; version="2.0.0"; sha256="06vdxljkjq1x56xkg041l271an1xv9wq79swxvzzk64dqqnmay51"; depends=[]; }; + confSAM = derive2 { name="confSAM"; version="0.1"; sha256="00l4hk0n63p3gdv6hpxqkkn3nw4rgw77rpwzn2k8fgq53ja44yfg"; depends=[]; }; confidence = derive2 { name="confidence"; version="1.1-0"; sha256="11y2mjh9ykmsgf6km6f2w5rql1vqwick4jzmxg5gkfkiisvsq1cp"; depends=[ggplot2 knitr markdown plyr xtable]; }; + config = derive2 { name="config"; version="0.2"; sha256="1p0gaqrqhcrdkp5cr3rn4i5ny8mr96b3q1fwgs0i8lk5riljkk20"; depends=[yaml]; }; + configr = derive2 { name="configr"; version="0.1.0"; sha256="0yajq3c9j22p3llkhla2x6mmphmpi4l1wshyyn1sv1fczldijvzc"; depends=[ini jsonlite RcppTOML yaml]; }; conformal = derive2 { name="conformal"; version="0.2"; sha256="13d8yv8l333n3m8kl2sdnd0m5b7gjixkqjlpfj312fk9nxvqdbcg"; depends=[caret e1071 ggplot2 randomForest]; }; - confreq = derive2 { name="confreq"; version="1.4"; sha256="0cbhisw3yhg71081a2f40jgbdjcvx36xrrnbhwcyhxd43qn2dp0q"; depends=[gmp]; }; + confreq = derive2 { name="confreq"; version="1.5.1"; sha256="0gy6d1kffb1w86ifldswb9krxyc2p646g9yjlfm1h243qlp52sfa"; depends=[gmp]; }; conicfit = derive2 { name="conicfit"; version="1.0.4"; sha256="1d704xgiyqmbwfxnsmhqg885x10q8yqxmrk4khqpg3lh696bw97d"; depends=[geigen pracma]; }; conics = derive2 { name="conics"; version="0.3"; sha256="06p6dj5dkkcy7hg1aa7spi9py45296dk0m6n8s2n3bzh3aal5nzq"; depends=[]; }; conjoint = derive2 { name="conjoint"; version="1.39"; sha256="0f8fwf419js9c292i3ac89rlrwxs2idhwxml1qd8xd2ggwfh6w5m"; depends=[AlgDesign clusterSim]; }; connect3 = derive2 { name="connect3"; version="0.1.0"; sha256="07ih875ynrxzynj989d0h469ilq6c634z2z3igvxpkx40wr451d5"; depends=[]; }; - conover_test = derive2 { name="conover.test"; version="1.1.1"; sha256="0dvxrm1hqzlkzhmp3p6qackjpwwvl812h63skwqiwh70sc7xifd0"; depends=[]; }; + conover_test = derive2 { name="conover.test"; version="1.1.2"; sha256="063a43v6f8hknaph78b92aqhwv6nfzsd029j4gqs2087lyqdk2ap"; depends=[]; }; constrainedKriging = derive2 { name="constrainedKriging"; version="0.2.4"; sha256="1a91s0b7yka37fb5pm172fmlqrhm6da370cqb9knvkg5n8vi4hys"; depends=[RandomFields rgeos sp spatialCovariance]; }; - contfrac = derive2 { name="contfrac"; version="1.1-9"; sha256="16yl96bmr16a18qfz6y5zf7p02ky1jy2iimcb1wp50g7imlcq840"; depends=[]; }; - conting = derive2 { name="conting"; version="1.5"; sha256="02vkpzdcwsny40jdcxgjfrx89lw1gq864s3fgswa9bfxfps9p58h"; depends=[BMS coda gtools mvtnorm tseries]; }; + contfrac = derive2 { name="contfrac"; version="1.1-10"; sha256="10mw75aznwbhi4kj8s7hyisgxnb4rv8pggcs8zdbmq22w7ql2rd7"; depends=[]; }; + conting = derive2 { name="conting"; version="1.6"; sha256="0hyg1nj89i780mf1fgmrfiv5gl5nzlar8i1zy8fsim73cw9y39fm"; depends=[BMS coda gtools mvtnorm tseries]; }; contoureR = derive2 { name="contoureR"; version="1.0.5"; sha256="1izq1alkf24zd2sf2ir2adyrkwhdj7n89cv6z0dfh5mfqld5bkdn"; depends=[geometry plyr Rcpp reshape]; }; - contrast = derive2 { name="contrast"; version="0.19"; sha256="1kc3scz3msa52lplc79mmn4z99kq1p2vlb18wqxa9q2ma133x6pl"; depends=[rms]; }; + contrast = derive2 { name="contrast"; version="0.21"; sha256="1fgm6qm3svqg8ryq2kd1h9z6f3ni8kki7gl3izvjw6wir97ph8nw"; depends=[geepack Hmisc MASS nlme rms sandwich]; }; controlTest = derive2 { name="controlTest"; version="1.0"; sha256="0gzhd92qy3dykwdfwckw6x46bd9m044hcn4bqwpv16af1xbrj963"; depends=[survival]; }; + convertGraph = derive2 { name="convertGraph"; version="0.1"; sha256="1jsrygj6ydzc0nzyzaq95j4blqavj7dqz182vgm1ckv8an3if0jx"; depends=[]; }; + convertr = derive2 { name="convertr"; version="0.1"; sha256="1y9aq5in2qv1323amblmq3g22flpqvpkgkrw12kahg56mqf2b3iq"; depends=[DT miniUI rstudioapi shiny]; }; convevol = derive2 { name="convevol"; version="1.0"; sha256="05nhpndixvrmiq5paswj7qwsq3k3al34q3j751bic4kb8zhby3fk"; depends=[ape cluster geiger MASS phytools]; }; - convoSPAT = derive2 { name="convoSPAT"; version="1.0"; sha256="0awax173csyj705nh48nfk1f4w00yjkm00xfglkphccpny1bkqyq"; depends=[ellipse fields geoR MASS plotrix StatMatch]; }; + convey = derive2 { name="convey"; version="0.1.0"; sha256="0qv8v5mfnzgyyiyx2yhmkmqscnf1q8i2p2hvhhx5y1ix045an93x"; depends=[survey]; }; + convoSPAT = derive2 { name="convoSPAT"; version="1.1.1"; sha256="17j5a5nppslx2rwg2grdz8ihhy0ryjlhrqar1yq7jknmrss3jlpv"; depends=[ellipse fields geoR MASS plotrix StatMatch]; }; cooccur = derive2 { name="cooccur"; version="1.3"; sha256="1wlaghhi4f3v8kzwhcgq3c6as7v3zlpkzhb232qz1amr7f0058kv"; depends=[ggplot2 gmp reshape2]; }; - coop = derive2 { name="coop"; version="0.3-0"; sha256="0mcxfhik6dd8knlnf9m34gf9ili6i3n9wq752dy66mx1z59kcvl6"; depends=[]; }; + cooccurNet = derive2 { name="cooccurNet"; version="0.1.6"; sha256="1vqfmvjrxxn977jrry47wn4lag4yi4bkyxwlis3n1ly39kkmyh2j"; depends=[bigmemory doParallel foreach igraph knitr Matrix pryr seqinr]; }; + coop = derive2 { name="coop"; version="0.6-0"; sha256="1q38kawck0625fyxmh7a0cya5yyhv9ds53q1l0h03vrappq5amxv"; depends=[]; }; cooptrees = derive2 { name="cooptrees"; version="1.0"; sha256="0izvwna1jsqik3v5fz1r4c86irvma42clw0p4rdvwswv5pk698i1"; depends=[gtools igraph optrees]; }; - copBasic = derive2 { name="copBasic"; version="2.0.1"; sha256="1jmjyz70hw8sbihxf74ir6sxrlcxwv0c1fhw1ph0raasbyxrxml6"; depends=[lmomco]; }; - copCAR = derive2 { name="copCAR"; version="1.0-1"; sha256="173jv69n4g68yfrz03sg23qzlyvvlw988axgj5knq3l2cq6pjpb2"; depends=[numDeriv Rcpp RcppArmadillo spam]; }; - cope = derive2 { name="cope"; version="0.1"; sha256="1g00dzy99m4212wrkhmqf8ibmilhp75hd2yv7yfzi28nr5jgir3m"; depends=[fields maps MASS mvtnorm]; }; - copula = derive2 { name="copula"; version="0.999-14"; sha256="08mas18knyz3laxrg9hx9i6rwhmksyi43wni2ydlrlp2cflq4ipz"; depends=[ADGofTest colorspace gsl lattice Matrix mvtnorm pspline stabledist]; }; + copBasic = derive2 { name="copBasic"; version="2.0.4"; sha256="0vc1rk0njcmd501jpsrpgqzrcqyplnycfaidn9qwns84cswx0hxs"; depends=[lmomco randtoolbox]; }; + copCAR = derive2 { name="copCAR"; version="2.0-1"; sha256="1mvbarzq409lkf7sd6s4adf2cgvmby7f1yg35x83bp1sc8529kz8"; depends=[mcmcse numDeriv Rcpp RcppArmadillo spam]; }; + cope = derive2 { name="cope"; version="0.2.3"; sha256="1r02nb6wy25ixhdcbqqz167s7ny3hydpxfxry5ar4136qvcamgyy"; depends=[abind fields maps MASS Matrix mvtnorm nlme]; }; + coprimary = derive2 { name="coprimary"; version="1.0"; sha256="0pjln9p5lzv6wl5xrz0kb90hnjlnp7ch2kvh054nxdbmlxv5akc3"; depends=[digest gsDesign plyr proto]; }; + copula = derive2 { name="copula"; version="0.999-16"; sha256="0mnhp5jhrbynnkdf9cmxzd5kqg8zvdrwldy8pn7sdjq18xq6qawa"; depends=[ADGofTest colorspace gsl lattice Matrix mvtnorm numDeriv pcaPP pspline stabledist]; }; copulaedas = derive2 { name="copulaedas"; version="1.4.2"; sha256="09w6b1m1lnlnsx0qp2mzlp0z9rxzz90qs9jqzwwjl56lzdad3vpr"; depends=[copula mvtnorm truncnorm vines]; }; - corHMM = derive2 { name="corHMM"; version="1.18"; sha256="1x1hrhb10rln4jhx03gx5ap1qbdk2xcknlnr3xmb6aawqsx0h4cq"; depends=[ape corpcor expm GenSA nloptr numDeriv phangorn]; }; + corHMM = derive2 { name="corHMM"; version="1.20"; sha256="1amfy419m8y9w6swa1avvjdyk2rjymsa280qsdy9zbq0izrgf9dr"; depends=[ape corpcor expm GenSA nloptr numDeriv phangorn]; }; corTools = derive2 { name="corTools"; version="1.0"; sha256="0arvqk2xp19ap73zmdk0kb1fycb3v2mf65b4bhanvcqwr4kg4vdk"; depends=[]; }; corclass = derive2 { name="corclass"; version="0.1.1"; sha256="0ai8si992f58mrvc8hq598zbw9d4jslnc96lpzj5d89lljjv3hf5"; depends=[igraph]; }; corcounts = derive2 { name="corcounts"; version="1.4"; sha256="0irlx62ql5rp5s7nnjdy6jh723wl4039wn10zxri8ihxwqsyyz3f"; depends=[]; }; cord = derive2 { name="cord"; version="0.1.1"; sha256="18xj6cwmx1a7p3vqx5img8qf8s75nc6pcv78v15j081pgn786ma5"; depends=[Rcpp RcppArmadillo]; }; - coreNLP = derive2 { name="coreNLP"; version="0.4-1"; sha256="0a6pc588ddi9qyi5gsnzzvm4k0p5sp5bnjrlsskaymzdq4rp6miz"; depends=[plotrix rJava XML]; }; + coreNLP = derive2 { name="coreNLP"; version="0.4-2"; sha256="0rvyqj7s3lijq4rzil65060b29m393m7zmg99mykp1g1kby5bjd8"; depends=[rJava XML]; }; + coreSim = derive2 { name="coreSim"; version="0.2.3"; sha256="00hrhiml3g0jld6pllpgjfrlpm2lqcdb01l6k9gkjyh3lab827fg"; depends=[dplyr MASS]; }; coreTDT = derive2 { name="coreTDT"; version="1.0"; sha256="14rnh61gk3m6g8rq77hm9ybds0px15di2mxm3jiyfdfynx5ng58f"; depends=[]; }; + corehunter = derive2 { name="corehunter"; version="3.1.0"; sha256="1q5bmzkmm8fzdnbj8s8mi0jxmrqp6ps14m1fm0c3frlqj3fy1ngm"; depends=[naturalsort rJava]; }; corkscrew = derive2 { name="corkscrew"; version="1.1"; sha256="1nb81r4lsrajcj3xz3f7p6xznnb38yg3rnnh44rd3kabca4d8r1s"; depends=[ggplot2 gplots igraph RColorBrewer]; }; + corlink = derive2 { name="corlink"; version="1.0.0"; sha256="06n9pcvbn8y9gy0mn9c0sw05424ss8smpaw3ly6a785cmj3d9b6m"; depends=[]; }; corpcor = derive2 { name="corpcor"; version="1.6.8"; sha256="0gnwqzfhxhxy7zxjzgga9l2npn588jjavqlmv9dag7ciq1kxmzk9"; depends=[]; }; corpora = derive2 { name="corpora"; version="0.4-3"; sha256="0zh8mabfy9yqgx7asi4yqv4c0kj59yvyxxaxjgdjy5kkr17zd4g4"; depends=[]; }; + corr2D = derive2 { name="corr2D"; version="0.1.12"; sha256="06jhcb4sr9mz06pc8jjrpl1qhxjp4bacal3hgy1k76lfbayxn7fv"; depends=[colorspace doParallel fields foreach mmand rgl]; }; + correctedAUC = derive2 { name="correctedAUC"; version="0.0.3"; sha256="0c2kq7asq5mp48p8niqb84wnw4q2q2985wxbrywrhsszm9p3xspb"; depends=[ICC mnormt]; }; corregp = derive2 { name="corregp"; version="0.1.4"; sha256="09gkxl5bmshsg8j9manvpwzy88djqqi8xrdhbmq6azk3g3lr70rp"; depends=[ellipse gplots rgl]; }; - corrgram = derive2 { name="corrgram"; version="1.8"; sha256="0myaf0j2sa895xiczhn6r97j988jxc1bv8wnh9cw2ppxzxqly4rg"; depends=[seriation]; }; - corrplot = derive2 { name="corrplot"; version="0.73"; sha256="0xnlkb8lhdjcc10drym9ymqzvfwa3kvf955y0k66z5jvabzyjkck"; depends=[]; }; + corrgram = derive2 { name="corrgram"; version="1.10"; sha256="065l93pdz3bms1b9qkcqhyi0j2bh4firl35rnfkajqbz5i3v8q55"; depends=[seriation]; }; + corrplot = derive2 { name="corrplot"; version="0.77"; sha256="1lr873lqg4zdjccf9g8a1fbvvdbvyb30j980ygiyxwpajpwnzdjl"; depends=[]; }; + corrr = derive2 { name="corrr"; version="0.2.1"; sha256="1d04nk92fjmk4kc5zipjqjhhmb1w97kid7l2jz5a8pkwiccn5byc"; depends=[dplyr ggplot2 ggrepel lazyeval magrittr purrr seriation tibble tidyr]; }; corrsieve = derive2 { name="corrsieve"; version="1.6-8"; sha256="0ak3j9khcwv5rxbicck2sr260wpmd3xj254y7pdavx2fk0b72yxs"; depends=[]; }; cosinor = derive2 { name="cosinor"; version="1.1"; sha256="02nnqg51vq48lzk667cyarnmhcf5mifnsdij7dlgqvz2k4fdq4pl"; depends=[ggplot2 shiny]; }; cosmoFns = derive2 { name="cosmoFns"; version="1.0-1"; sha256="0a6xhbgxxnymlvicg99yhgny2lscxcbmvqmy17kxmahdi797dsg6"; depends=[]; }; - cosmosR = derive2 { name="cosmosR"; version="1.0"; sha256="0w4qywnkgcybgyyhnvvg33amqi2vnkry6iajakyqr1x2hzfpf9sv"; depends=[xlsx]; }; cosso = derive2 { name="cosso"; version="2.1-1"; sha256="1wyq27qak0kz4bbzynm24r5ksvb6ddd43h2ykh6m935xck16blyb"; depends=[glmnet quadprog Rglpk]; }; costat = derive2 { name="costat"; version="2.3"; sha256="1kqyl89lx1amap9zgrfy1bqnl93kahrksj6yms44yrxr1as2g4nk"; depends=[wavethresh]; }; cotrend = derive2 { name="cotrend"; version="1.0"; sha256="0h0y502wqq83wlf9ab1b9rxg1wycvi3sp4lbqfpvy46vgljrjw87"; depends=[xts]; }; - couchDB = derive2 { name="couchDB"; version="1.3.0"; sha256="153zxi2liv932r7mphhzgxw4wyizh5iyk62ad6x64av31kd2qzsn"; depends=[bitops httr RCurl rjson]; }; - countrycode = derive2 { name="countrycode"; version="0.18"; sha256="1by3xws2c43ryz4fnlq85yvgnwnvzmvjbd18cafirlwpl6liy2ic"; depends=[]; }; + couchDB = derive2 { name="couchDB"; version="1.4.1"; sha256="1n99amvnsjp88y091603hjsvp243c5i6dbrsvdjfmzgj5dsrv70m"; depends=[bitops httr RCurl rjson]; }; + countrycode = derive2 { name="countrycode"; version="0.19"; sha256="0cgv8sds01figs5dsm1gga2py2nzf3a3xrlkmblal52xxpng2jf8"; depends=[]; }; + countytimezones = derive2 { name="countytimezones"; version="1.0.0"; sha256="0sk22fmz9d3wvlfvjl1xdavvl04q1ywy8ww2gi5am3yiizkf0v9w"; depends=[dplyr lubridate]; }; + countyweather = derive2 { name="countyweather"; version="0.1.0"; sha256="0q56bnh9x6jyj1sdd1q4yv2n774mbv268pgp285bjybgqm2pyisz"; depends=[dplyr geosphere ggmap ggplot2 lubridate purrr raster rnoaa sp stringi tibble tidyr tigris]; }; covBM = derive2 { name="covBM"; version="0.1.0"; sha256="0ky1lhr8m4hy2ss1nr2xymf6cmj1rr8px8zsxna6bsisf5bq4j4w"; depends=[nlme]; }; covLCA = derive2 { name="covLCA"; version="1.0"; sha256="15jsjrlaws1cqyrwvh4lzbhxkb11jmgpmddg98nfrzmjpczn2iw3"; depends=[Matrix mlogit poLCA]; }; covRobust = derive2 { name="covRobust"; version="1.1-0"; sha256="1nvy5cqs4g565qj2hhgk5spr58ps2bhas3i752rf7wvrskb89fk7"; depends=[]; }; covTest = derive2 { name="covTest"; version="1.02"; sha256="0p4di8bdjghsq5jd678dprlhiwnxr5piqlx2z7hi2bjjpvvl5657"; depends=[glmnet glmpath lars MASS]; }; - covafillr = derive2 { name="covafillr"; version="0.2.1"; sha256="1mn7jnhimp1bspsl8rq8br8z4r2nb7izbvykbzz5zpmgg2204pl5"; depends=[RcppEigen]; }; + covafillr = derive2 { name="covafillr"; version="0.4.0"; sha256="0q6zzgpgwzmdwpz9lzhprhyy9nsrzwk35g35ighayd8d6c7ih44f"; depends=[ggplot2 RcppEigen]; }; covmat = derive2 { name="covmat"; version="1.0"; sha256="00y966897x83v471yarfikpr794b7adhgn5c9hgh0j1j4yfdc3b8"; depends=[DEoptim doParallel fGarch foreach ggplot2 gridExtra lhs Matrix mvtnorm optimx reshape2 RMTstat robust robustbase scales VIM xts zoo]; }; - covr = derive2 { name="covr"; version="1.2.0"; sha256="1gavcqqbg211sv52sicrh87vif71dl6n9xfcb6b3giqw897w7vrc"; depends=[crayon devtools htmltools httr jsonlite rex]; }; + covr = derive2 { name="covr"; version="2.2.2"; sha256="0bx2fjaxqigiic2fndpn1y0whag6b2j733dn1cq4qd601sfca1w3"; depends=[crayon httr jsonlite rex withr]; }; covreg = derive2 { name="covreg"; version="1.0"; sha256="0v19yhknklmgl58zhvg4szznb374cdh65i7s8pcj2nwrarycwzaq"; depends=[]; }; - cowplot = derive2 { name="cowplot"; version="0.6.1"; sha256="1lfqs19l0xs87lnm06f8cy1vkl8hhmwp1g6zl9k1ar60h7kg0y4l"; depends=[ggplot2 gtable plyr]; }; - cowsay = derive2 { name="cowsay"; version="0.4.0"; sha256="0lbamjvngj1s0jv8ybbfddx52yqf3h7zkjixl9qr0ha8xkidg7r3"; depends=[fortunes]; }; + covsep = derive2 { name="covsep"; version="1.0.0"; sha256="1i6ygzzf2s0f7a42q2pb1v0gn369wxdyxvbk4k891irq352sf18r"; depends=[mvtnorm]; }; + cowplot = derive2 { name="cowplot"; version="0.7.0"; sha256="03iimcsh1pk7iqzjdlfcj43b8khijdk4hg00j4jdllv19xsfb0hx"; depends=[ggplot2 gtable plyr]; }; + cowsay = derive2 { name="cowsay"; version="0.5.0"; sha256="16rlpyfiwk2f04p49inf5m3pb5nvb45xs6sdfjszihm1hxl09x7x"; depends=[fortunes rmsfact]; }; coxinterval = derive2 { name="coxinterval"; version="1.2"; sha256="0vb7vmzbb2dsihx04jbp2yvzcr033g435mywmwimqhfqdrmjx3fi"; depends=[Matrix survival timereg]; }; coxme = derive2 { name="coxme"; version="2.2-5"; sha256="0lpdwpvsgjgmbf55qqhflw4q40xmqm422inkssgn3ladcp68gb1s"; depends=[bdsmatrix Matrix nlme survival]; }; - coxphf = derive2 { name="coxphf"; version="1.11"; sha256="0494szmhc7qp1qynrqf3kmna26h4ams40qr6w7qj4al54mkp0346"; depends=[survival]; }; - coxphw = derive2 { name="coxphw"; version="3.0.0"; sha256="11pyd09dwkbixjz1riv8rz3jrp1ix6cbn1fw9nm8vnrc19x5lkz5"; depends=[survival]; }; + coxphf = derive2 { name="coxphf"; version="1.12"; sha256="0vsdpbpc18fm6dwiqjwclgimwng34xqzy2mqbcijs6p7h1j124a0"; depends=[survival]; }; + coxphw = derive2 { name="coxphw"; version="4.0.0"; sha256="02xiwrvc3gbwwjcz9kwy2g91jrjpawch5r4pq6l4lyvl556w296l"; depends=[survival]; }; coxrobust = derive2 { name="coxrobust"; version="1.0"; sha256="08hp0fz5gfxgs3ipglj6qfr6v63kzxkrzg650bmzabq8dvrxd97q"; depends=[survival]; }; coxsei = derive2 { name="coxsei"; version="0.1"; sha256="1agr0gmyy1f2x6yspj04skgpi1drpbc1fcbwhhhjsz1j6c64xagy"; depends=[]; }; - cp4p = derive2 { name="cp4p"; version="0.3.4"; sha256="03g4fn7ih6nmi9xsn7b10ljfdmcv8svyiwcpd5l3yzl3ylbwf2gh"; depends=[limma MESS multtest qvalue]; }; + cp4p = derive2 { name="cp4p"; version="0.3.5"; sha256="16pkl0brm415v153ln41nyy13fsp4i0jy8349lsffkv5mvp7vklc"; depends=[limma MESS multtest qvalue]; }; cpa = derive2 { name="cpa"; version="1.0"; sha256="14kcxayw4cdbjfa6bvfzqp8flwc0sr3hmh2dnr1dfax0hnccd71m"; depends=[]; }; cpca = derive2 { name="cpca"; version="0.1.2"; sha256="1pccsjahb1qynnxa0akhfpcmhfmdg4rd1s6pfqrdl7bwbcmq4lqf"; depends=[]; }; cpgen = derive2 { name="cpgen"; version="0.1"; sha256="1cp3d6riy65lc1mfrxh92lc6f1qal7amhjilfzz0r529j5fipd2v"; depends=[Matrix pedigreemm Rcpp RcppEigen RcppProgress]; }; cpk = derive2 { name="cpk"; version="1.3-1"; sha256="1njmk2w6zbp6j373v5nd1b6b8ni4slgzpf9qxn5wnqlws8801n73"; depends=[]; }; - cplexAPI = derive2 { name="cplexAPI"; version="1.3.1"; sha256="0idh2fjc6lkpk24d476rsgn2w7nskiclbbfy1pwh8m49wj70h4ix"; depends=[]; }; - cplm = derive2 { name="cplm"; version="0.7-4"; sha256="156w3yiazx79133rmxmgz9v4im8g7h37fj4gq5ymy5255ws07m8m"; depends=[biglm coda ggplot2 Matrix minqa nlme reshape2 statmod tweedie]; }; + cplexAPI = derive2 { name="cplexAPI"; version="1.3.3"; sha256="1li5sbakkq8hrgwsa4i1qa5bdjj6vm6s9sq23ccknbb8bxp4zmwv"; depends=[]; }; + cplm = derive2 { name="cplm"; version="0.7-5"; sha256="16li79x2zyydi7gi4n8k09g9x2n1dgd9av3nqjnb0by3v31c44n0"; depends=[biglm coda ggplot2 Matrix minqa nlme reshape2 statmod tweedie]; }; cpm = derive2 { name="cpm"; version="2.2"; sha256="1n1iqhalp99mbh8jha0pv759fb97sqxdiiq9bxy3wm6aqmssvdb1"; depends=[]; }; cqrReg = derive2 { name="cqrReg"; version="1.2"; sha256="1sn8pkbqb058lbysdf2y1s734351a91kwbanplyzv3makbbdm4ca"; depends=[quantreg Rcpp RcppArmadillo]; }; cquad = derive2 { name="cquad"; version="1.3"; sha256="1r6g3yp3vvm8d5351lan4im1bmir38d4l9cf8bw0ay7as33ny3x9"; depends=[MASS plm]; }; crackR = derive2 { name="crackR"; version="0.3-9"; sha256="18fr3d6ywcvmdbisqbrbqsr92v33paigxfbslcxf7pk26nzn2lly"; depends=[evd Hmisc]; }; cramer = derive2 { name="cramer"; version="0.9-1"; sha256="1dlapmqizff911v3jv8064ddg8viw28nq05hs77y5p4pi36gpyw4"; depends=[boot]; }; - crandatapkgs = derive2 { name="crandatapkgs"; version="0.1.3"; sha256="0yz16ilmy0cilsb9f61bs3y48xi614i4l5qw6fh8hinsqnhzyv0l"; depends=[]; }; + crandatapkgs = derive2 { name="crandatapkgs"; version="0.1.5"; sha256="113apslycwdgyx18gxbamz235267h2v9b4r2d3pakw38sh74z3qz"; depends=[]; }; crank = derive2 { name="crank"; version="1.1"; sha256="117sgq7zm5wxmd97sfc927qq70snra6vd090mhpcsdhipw1py6zc"; depends=[]; }; cranlogs = derive2 { name="cranlogs"; version="2.1.0"; sha256="1w1nbifjb9l106fk97zy0w73x73bw5azq89l3c1b8r2fz8aljkkc"; depends=[httr jsonlite]; }; crantastic = derive2 { name="crantastic"; version="0.1"; sha256="0y2w9g100llnyw2qwjrib17k2r2q9yws77mf6999c93r8ygzn4f5"; depends=[]; }; - crawl = derive2 { name="crawl"; version="2.0"; sha256="1brk2xpa623x58rf98bkyq1fqz0mqavg55pj2xifs481iz70w294"; depends=[mvtnorm Rcpp RcppArmadillo shiny]; }; - crayon = derive2 { name="crayon"; version="1.3.1"; sha256="0d38fm06h272a8iqlc0d45m2rh36giwqw7mwq4z8hkp4vs975fmm"; depends=[memoise]; }; + crawl = derive2 { name="crawl"; version="2.0.1"; sha256="0jmkbcpf681v00z7p36cni5wrh0y3mbxjia6bnajqjpaqdqzz8la"; depends=[mvtnorm Rcpp RcppArmadillo shiny]; }; + crayon = derive2 { name="crayon"; version="1.3.2"; sha256="0s2yam18slph7xsw4pyc9f92gdyf609r5w92yax69zh57kb7asws"; depends=[]; }; crblocks = derive2 { name="crblocks"; version="0.9-1"; sha256="1m6yy6jb1dld7m9jaasms5ps8sn3v039jvlk8b0c08hmm7y0rm3z"; depends=[]; }; - crch = derive2 { name="crch"; version="0.9-2"; sha256="0i3gli7l4p4xmwq7xzalpq2l140wj36wbggwh3k3jbn0avxpbi56"; depends=[Formula ordinal]; }; + crch = derive2 { name="crch"; version="1.0-0"; sha256="1wd9hwr68qlinaw23lckjizq5g67v74wc3v6ig1rxrxyssyzag68"; depends=[Formula ordinal]; }; creditr = derive2 { name="creditr"; version="0.6.1"; sha256="1dhjl99gjc97bdsdg29mq6xifivjn9kr0y7m2jzvrzb26x856z97"; depends=[devtools quantmod Rcpp RCurl XML xts zoo]; }; credule = derive2 { name="credule"; version="0.1.3"; sha256="1vciqkxkf93z067plipvhbks9k9sfqink5rhifzbnwc2c5gxp5mx"; depends=[]; }; - cricketr = derive2 { name="cricketr"; version="0.0.12"; sha256="0v6g3kkf9a8qvmfis1xdhja5j1impmi6mm5dmlq04s8qj4khnnqi"; depends=[dplyr forecast ggplot2 lubridate plotrix scatterplot3d XML]; }; + cricketr = derive2 { name="cricketr"; version="0.0.13"; sha256="1nj72avz1m12nn3kyiy4msrvrwhdxl0mywc22wwc6j9dq7v7gh18"; depends=[dplyr forecast ggplot2 lubridate plotrix scatterplot3d XML]; }; crimCV = derive2 { name="crimCV"; version="0.9.3"; sha256="1p2cma78fb9a2ckmwdvpb6fc0818xw2mvq565dgiimgkdmmr0iid"; depends=[]; }; crimelinkage = derive2 { name="crimelinkage"; version="0.0.4"; sha256="1zzk50kyccvnp51vzp28c9yi23hsp25arrgdn88lwfwa0m43rlar"; depends=[geosphere igraph]; }; - crmPack = derive2 { name="crmPack"; version="0.1.9"; sha256="0kr2vqmi4bk5dmbi44xvg3rqnfmhj69qcqwbll0qqxd5x36jpkbq"; depends=[BayesLogit GenSA ggplot2 gridExtra MASS mvtnorm rjags]; }; + crisp = derive2 { name="crisp"; version="1.0.0"; sha256="1gs8jnd9y9pd55w6kwv9mvmg3wd8hjiw3lwx7k242pxccsxklfxq"; depends=[MASS Matrix]; }; + crmPack = derive2 { name="crmPack"; version="0.2.0"; sha256="1bgy3bfsasjppd0gf9yxrfyc1glzqpgdfpl9kv2lv34xbywwad05"; depends=[BayesLogit GenSA ggplot2 gridExtra MASS mvtnorm rjags]; }; crmn = derive2 { name="crmn"; version="0.0.20"; sha256="1kl1k1s2gm63f9768cg8w4j6y1gq4hws3i7hdfhj7k9015s0a25p"; depends=[Biobase pcaMethods]; }; crn = derive2 { name="crn"; version="1.1"; sha256="1fw0cwx478bs6hxidisykz444jj5g136zld1i8cv859lf44fvx2d"; depends=[chron RCurl]; }; crop = derive2 { name="crop"; version="0.0-2"; sha256="1yjpk7584wrz9hjqs21irjnrlnahjg8lajra9yfdp6r927iimg1l"; depends=[]; }; crossReg = derive2 { name="crossReg"; version="1.0"; sha256="1866jhfnksv9rk89vw7w4gaxi76bxfjvqxx7cfa8nlrcsmaqd7rf"; depends=[]; }; crossdes = derive2 { name="crossdes"; version="1.1-1"; sha256="1d7lv3ibq1rwxx8kc3ia6l9dbz2dxdd5pnf2vhhjmwm448iamcfd"; depends=[AlgDesign gtools]; }; crossmatch = derive2 { name="crossmatch"; version="1.3-1"; sha256="082lrv2129mfhwlh99z3g8id3a29s8854skl152bl3ig8pk2gbjz"; depends=[nbpMatching survival]; }; + crosstalk = derive2 { name="crosstalk"; version="1.0.0"; sha256="0lfa89vhrzi7a1rghmygcjr8gzddw35sinb3jx6g49mc9jias7mk"; depends=[ggplot2 htmltools jsonlite lazyeval R6 shiny]; }; crossval = derive2 { name="crossval"; version="1.0.3"; sha256="0acpcisg6pkxblyc4j9hiri58h1rn7ay43p5ib5ia8a4a8bnfa4p"; depends=[]; }; - crp_CSFP = derive2 { name="crp.CSFP"; version="2.0.1"; sha256="0l2fwdawfbx7971q7jg7604w2ys056rfywiw0myfgc0z864saz0n"; depends=[MASS]; }; + crp_CSFP = derive2 { name="crp.CSFP"; version="2.0.2"; sha256="0gazmhf5bv994x441m2xm0w18h9lw3y68qzdf6gmyqimj4wjqjgf"; depends=[MASS]; }; crqa = derive2 { name="crqa"; version="1.0.6"; sha256="1v9fwl98jjlg2z5skqsjmmgpmmxy4g1gzvc28yflvdp50qn509v8"; depends=[fields Matrix plot3D pracma tseriesChaos]; }; crrSC = derive2 { name="crrSC"; version="1.1"; sha256="171cw56q2yv1vb4qd0va75i2q89jcw1126q8pcbv0235g7p2a86z"; depends=[survival]; }; crrp = derive2 { name="crrp"; version="1.0"; sha256="1fq54jr6avrli91a4z1hp5img4kghyw1yvjr5xyccsanf9i35x8r"; depends=[cmprsk Matrix survival]; }; crrstep = derive2 { name="crrstep"; version="2015-2.1"; sha256="03vd97prws9gxc7iv3jfzffvlrzhjh0g6kyvclrf87gdnwifyn1z"; depends=[cmprsk]; }; crs = derive2 { name="crs"; version="0.15-24"; sha256="08k8vim4n85ll16zpkwbf3riz641kafn699qsg0h746zqzi1kfn7"; depends=[boot np quantreg rgl]; }; - crskdiag = derive2 { name="crskdiag"; version="1.0"; sha256="18qx8i069c7xck7rfgfkrnw409ikv1jx375vlq7vqp61qx91lqic"; depends=[cmprsk]; }; - crunch = derive2 { name="crunch"; version="1.8.0"; sha256="0z0035bv70b13xjxbqa97bpjkr44dw7k3fca96xhjkwn83vjm62f"; depends=[curl digest httr jsonlite]; }; - cruts = derive2 { name="cruts"; version="0.2"; sha256="1qxhkikym2f775zf4zg0pd960lcdd183fpnmd7afm75lm2xpzccv"; depends=[lubridate ncdf4 raster sp stringr]; }; + crskdiag = derive2 { name="crskdiag"; version="1.0.1"; sha256="0100wbyvchx6jwlrwc6rwhdjanips5c0f5zqzs2c0dgwygpqw30w"; depends=[cmprsk]; }; + crsnls = derive2 { name="crsnls"; version="0.2"; sha256="0rv0xrdl9ix6bhaf554gma8zf923w47f8j1dkbs8g6xjqjr1c40a"; depends=[]; }; + crtests = derive2 { name="crtests"; version="0.2.1"; sha256="0z8idz37dgwvi1q2vryldii7fn9yxd32gds77ml76jfplxbkikpd"; depends=[caret plyr stringr]; }; + crul = derive2 { name="crul"; version="0.3.0"; sha256="1a59zb2ifxg59yzjyf1gq4fk0vqvc0alvifpn2rssis8jyr6g7wr"; depends=[curl httpcode mime R6 urltools]; }; + crunch = derive2 { name="crunch"; version="1.14.4"; sha256="11pj3pbb9hs7bwdmgr10jlir95rq4xdn4qmyklqjls2kgh9r9sfn"; depends=[curl httpcache httr jsonlite]; }; + cruts = derive2 { name="cruts"; version="0.3"; sha256="0yn6xc2wg23nkjnsb7kii7dn897wf4ymnpmgppacrsznl8mmlmgd"; depends=[lubridate ncdf4 raster sp stringr]; }; + cryst = derive2 { name="cryst"; version="0.1.0"; sha256="04da19dy3mkngd3ma44cd8cdkb5acjy9lbhfipa9flp339j1pp57"; depends=[flux pracma]; }; csSAM = derive2 { name="csSAM"; version="1.2.4"; sha256="1ms8w4v5m9cxs9amqyljc2hr1178cz6pbhmv7iiq9yj1ijnl4r1x"; depends=[]; }; csampling = derive2 { name="csampling"; version="1.2-2"; sha256="0gj85cgc3lgv7isqbkng4wgzg8gqcic89768q2p23k4jhhn6xm2w"; depends=[marg statmod survival]; }; - cshapes = derive2 { name="cshapes"; version="0.5-1"; sha256="1mdg0yjp3jplj2jr5kqs2n4j9l2419n5xp3xnjv8kc8a8anc2asg"; depends=[maptools plyr sp]; }; + cshapes = derive2 { name="cshapes"; version="0.6"; sha256="0mp6grkibmqk4k1yi4w2sglpp9ari5cfw4iip49a0z58qa98npw7"; depends=[maptools plyr sp]; }; cslogistic = derive2 { name="cslogistic"; version="0.1-3"; sha256="1s8p3qpz81nn6zr0pzw6h9ca3p6ahd8zj640vy5gcb5waqwj6bfj"; depends=[mvtnorm]; }; csn = derive2 { name="csn"; version="1.1.3"; sha256="102w1qh9hgz4j9lh5hnbw1z3b7p034si73q4pkk564a2mhzlksw4"; depends=[mvtnorm]; }; + csp = derive2 { name="csp"; version="0.1.0"; sha256="1pc5mcn9difpp4cmfb0a8pqhbpkfakxjkbr7bpqmfiwcfk8rzr1h"; depends=[]; }; csrplus = derive2 { name="csrplus"; version="1.03-0"; sha256="0kljndmiwblsvvdnxfywida9k0dmdwjq63d934l5yl6z7k4zd0xa"; depends=[sp]; }; + cssTools = derive2 { name="cssTools"; version="1.0"; sha256="1p8c21c1hilmd9ibqyz493fy1x95hb2pidybsyicch53gkb542br"; depends=[sna]; }; + cstab = derive2 { name="cstab"; version="0.2"; sha256="0wvcsxfbrw9p1y0l81m4i5p2x8alrzrq30lmprmx2hgazv038b4g"; depends=[cluster fastcluster Rcpp]; }; cstar = derive2 { name="cstar"; version="1.0"; sha256="1zws4cq5d37hqdxdk86g85p2wwihbqnkdsg48vx66sgffsf1fgxd"; depends=[]; }; + csv = derive2 { name="csv"; version="0.4"; sha256="00nvxr9q8sphmb44vhwszknpd77gzmp8r87r5imd3rwdmql8vs31"; depends=[]; }; csvread = derive2 { name="csvread"; version="1.2"; sha256="1zx43g4f4kr7jcmiplzjqk2nw1g5kmmfap85wk88phf6fp0w8l5p"; depends=[]; }; - ctmcmove = derive2 { name="ctmcmove"; version="1.2.1"; sha256="0hca63bsqk0jymmcpn6f76mp0s90jm9c03min40svlfriapqb5f4"; depends=[crawl Matrix raster]; }; - ctmm = derive2 { name="ctmm"; version="0.3.1"; sha256="0y8mmc09q5gsanddwxivynwpvwa9hwafayqqk57xjh1xsnsdbxn5"; depends=[expm manipulate MASS Matrix numDeriv pbivnorm raster rgdal scales sp]; }; + csvy = derive2 { name="csvy"; version="0.1.3"; sha256="0vszbxqa88sdsi73wng4y8zxhrvcksqa6qs3rbh50c2nll8r8kb3"; depends=[yaml]; }; + cthreshER = derive2 { name="cthreshER"; version="1.1.0"; sha256="18b66d08dq8pvnixmm4ir4r800b37z5yillaa88l317mdilbci9s"; depends=[Matrix]; }; + ctl = derive2 { name="ctl"; version="1.0.0-0"; sha256="12hrrql9wz43s1d3sfyzlqzx7ajrl3hvf96776ik6icbm8by8h6j"; depends=[MASS qtl]; }; + ctmcd = derive2 { name="ctmcd"; version="1.0"; sha256="1qv2r7myrvr0a5gcrs6bi46dm4kicyyn95rkr6qyvvdnz2i2mhqm"; depends=[expm numDeriv Rcpp RcppArmadillo]; }; + ctmcmove = derive2 { name="ctmcmove"; version="1.2.7"; sha256="1bhzwh1hhfda49p52ixvicx2mbca28mhnhh4h6nvm2i3m72dkfrq"; depends=[fda gdistance Matrix raster sp]; }; + ctmm = derive2 { name="ctmm"; version="0.3.5"; sha256="0lg3mrwdsphwj1c0r4655a1glk49p0y60rd1w11jvz16y6r6j59b"; depends=[expm manipulate MASS numDeriv pbivnorm raster rgdal scales]; }; + ctqr = derive2 { name="ctqr"; version="1.0"; sha256="1q4icv8qicgwr664cbrmkh2x9xmlrc80yvz8gnaqh86248kn4yp3"; depends=[pch survival]; }; cts = derive2 { name="cts"; version="1.0-20"; sha256="0bsf52b98fji85j01qv0krc7yzr8mqhvn7w1zsy2rbanjmlwmnca"; depends=[]; }; - ctsem = derive2 { name="ctsem"; version="1.1.5.2"; sha256="0rh4ikkkmzz2nrd62zbky6chxkx9hfdjr65iqp38b4pw0wdkvnvp"; depends=[MASS Matrix OpenMx]; }; - ctv = derive2 { name="ctv"; version="0.8-1"; sha256="1fmjhh4vr4vcvqg76dzp1avqappsap5piki1ixahikwbwirxcwvw"; depends=[]; }; - cubature = derive2 { name="cubature"; version="1.1-2"; sha256="1vgyvygg37b6yhy8nkly4w6p01jsqg2kyam4cn0vvml5vjdlc18a"; depends=[]; }; + ctsem = derive2 { name="ctsem"; version="2.2.0"; sha256="0gi2lh9wyl0bl1dhlmifciyj4f0xffxqswhhcrybff5dv7bip3nv"; depends=[Matrix OpenMx plyr rstan]; }; + ctv = derive2 { name="ctv"; version="0.8-2"; sha256="0xpxxkn6x26vmdkd2hkn8afyn95q2yg4kl5i989dipqzxc47fbrv"; depends=[]; }; + cubature = derive2 { name="cubature"; version="1.3-6"; sha256="0ck9lrk39pnb3piz5dpgsbkbcppx7hq61c3hpjk5mcacgxnd8jvy"; depends=[Rcpp]; }; cubfits = derive2 { name="cubfits"; version="0.1-2"; sha256="07phnpgag68ss08qyzhj2g1s084w0cc583a30i09c82ql9j3gbpk"; depends=[coda foreach]; }; cudaBayesreg = derive2 { name="cudaBayesreg"; version="0.3-16"; sha256="1xsamdsg4cq7l5r7czkg70j5gypf1dak3h353xfbz3rq0r0dni19"; depends=[cudaBayesregData oro_nifti]; }; cudaBayesregData = derive2 { name="cudaBayesregData"; version="0.3-11"; sha256="1cls9xqgps7icjpi1mllkrksdxwc1jfhxgffvrcrqx2l16vw6qfx"; depends=[]; }; cudia = derive2 { name="cudia"; version="0.1"; sha256="1ms3bc8sp6l3bm75j418mmb707sy3gyvxznhfias3nd4sw7i074x"; depends=[MCMCpack mvtnorm]; }; cumSeg = derive2 { name="cumSeg"; version="1.1"; sha256="01hn3j1i7bi2r9vsqwbgy1f1alcisxyf4316xx57bg82lb34d0s5"; depends=[lars]; }; cumplyr = derive2 { name="cumplyr"; version="0.1-1"; sha256="07sz1wryl3kxbk67qyvnkrkdrp4virlsaia0y6rf9bqdw7rc6vi2"; depends=[]; }; - curl = derive2 { name="curl"; version="0.9.6"; sha256="0zlpa7ilxdcf3754xgnsiipqsjv896wimgay4lk3ddadplrh76wc"; depends=[]; }; + cumstats = derive2 { name="cumstats"; version="1.0"; sha256="119w751z9dg6pjyk389pbl8ab8pirf9sqndi4nxi89ix2bby4xz8"; depends=[]; }; + curl = derive2 { name="curl"; version="2.3"; sha256="0gbw5l0wnsw26fbr08gj9vgxrzxg8axvqxfshmd8g9khpgbdl0gr"; depends=[]; }; + curlconverter = derive2 { name="curlconverter"; version="0.7.0"; sha256="03nv3kkw171qxafy0acbfs7kxaz89i1l7jyi3n46f5fapks4vx4x"; depends=[clipr curl formatR httr jsonlite magrittr purrr stringi V8]; }; currentSurvival = derive2 { name="currentSurvival"; version="1.0"; sha256="0bqpfwf4v4pb024a98qwg81m6zd7ljg1ps42ifhxpqx7b9gdyi6c"; depends=[cmprsk survival]; }; + curry = derive2 { name="curry"; version="0.1.1"; sha256="1ps9hvbnb02m0b8hlw4admwbziyjvswj08ldi2dk3ymnrpawcc29"; depends=[]; }; curvHDR = derive2 { name="curvHDR"; version="1.1-0"; sha256="0cymz4i29sih9z5hkih86db41x39kzzm9vq1374rfxz26l2c00xy"; depends=[feature geometry hdrcde KernSmooth ks misc3d ptinpoly rgl]; }; curvetest = derive2 { name="curvetest"; version="2.2"; sha256="1lz6rx9fmgyrlci1dyanscp2a18ki9lhrwnrzhp062flysffimg6"; depends=[locfit R_methodsS3 R_oo]; }; cusp = derive2 { name="cusp"; version="2.3.3"; sha256="130m0is48bp11p5fpg17lwqwlavsa8fzfxjs0z62vl6lm006aahw"; depends=[]; }; - customizedTraining = derive2 { name="customizedTraining"; version="1.0"; sha256="0ywyn5jqlhizvsa19xs89xs5bl1sbismjajdk78w1py1s97z9k8w"; depends=[FNN glmnet]; }; + customizedTraining = derive2 { name="customizedTraining"; version="1.1"; sha256="0rlfsnhmmcwx7iyjavj03v4kdfzxcqjggi8qpgmi6lkli3n0s6pg"; depends=[FNN glmnet]; }; cutoffR = derive2 { name="cutoffR"; version="1.0"; sha256="1801jylmpp4msyf07rhg4153kky1zvi4v0kkjb9d51dc7zkhh531"; depends=[ggplot2 reshape2]; }; cuttlefish_model = derive2 { name="cuttlefish.model"; version="1.0"; sha256="1rmkfyfd1323g2ymd5gi1aksp160cwy5ha5cjqh5r6fzd8hhqjxs"; depends=[]; }; cvAUC = derive2 { name="cvAUC"; version="1.1.0"; sha256="13bk97l5nn97h85iz93zxazhr63n21nwyrpnl856as9qp59yvn64"; depends=[data_table ROCR]; }; cvTools = derive2 { name="cvTools"; version="0.3.2"; sha256="0b7xb6dmhqbvz32zyfbdvm9zjyc59snic6wp1r21ina48hchn3sj"; depends=[lattice robustbase]; }; + cvequality = derive2 { name="cvequality"; version="0.1.1"; sha256="0pqvaz8vfwd0x433rrdwdwjp3hgsw1nb5nzsxci5zibjksk14kgp"; depends=[]; }; cvplogistic = derive2 { name="cvplogistic"; version="3.1-0"; sha256="1lm66nn0q7665r64rdslxp35b7drdss4mys42ks54xdydcminns9"; depends=[]; }; cvq2 = derive2 { name="cvq2"; version="1.2.0"; sha256="19k95xg2y3wd4mx3wvbrc1invybd446g13vsp3dv05nw2kx4f6w8"; depends=[]; }; cvxbiclustr = derive2 { name="cvxbiclustr"; version="0.0.1"; sha256="00k75zy8v6qd5fg0h258i5z8ljjkfgkxz45cspysl1ap89d5n7df"; depends=[igraph Matrix]; }; @@ -3618,54 +4463,69 @@ in with self; { cwm = derive2 { name="cwm"; version="0.0.3"; sha256="1ln2l12whjhc2gx38hkf3xx26w5vz7m377kv67irh6rrywqqsyxn"; depends=[MASS matlab permute]; }; cxxfunplus = derive2 { name="cxxfunplus"; version="1.0"; sha256="0kyy5shgkn7wikjdqrxlbpfl3zkkv4v1p8a1vv0xkncwarjs4n8d"; depends=[inline]; }; cycleRtools = derive2 { name="cycleRtools"; version="1.1.1"; sha256="1l7w2lm4s149ndd85v41pkdrdig6l3nmhl14bdx56aw8q57fxmb0"; depends=[Rcpp xml2]; }; - cyclocomp = derive2 { name="cyclocomp"; version="1.0.0"; sha256="0a8xg5ivkswbmrmz7zby2ja3l0zdnpz3dlkwq1m4nbpjbyhkvlw5"; depends=[]; }; + cyclocomp = derive2 { name="cyclocomp"; version="1.1.0"; sha256="0gky3svk02wiajw7nfjh30684h3qxili4bvsab0m7b6cggw6bgyd"; depends=[callr crayon desc remotes withr]; }; cycloids = derive2 { name="cycloids"; version="1.0"; sha256="00pdxny11mhfi8hf76bfyhd1d53557wcbl2bqwjzlpw5x3vdnsan"; depends=[]; }; cymruservices = derive2 { name="cymruservices"; version="0.2.0"; sha256="1pgk9llaz0glhgf3n60nq3xb8kp4jkk8paz4scxff3whyksxv4yn"; depends=[purrr stringr]; }; cyphid = derive2 { name="cyphid"; version="1.1"; sha256="0ya9w8aw27n0mvvjvni4hxsr4xc8dd08pjxx7zkfl1ynfn5b08am"; depends=[fda]; }; + cystiSim = derive2 { name="cystiSim"; version="0.1.0"; sha256="0pz8jxi4lgcwzrb4dh8xn63xhpaga5rzg5hwqicwv8isc16iqizd"; depends=[ggplot2 knitr magrittr]; }; cytoDiv = derive2 { name="cytoDiv"; version="0.5-3"; sha256="00c0gqgypywgbhavb15bvj6ijrk4b5zk86w85n9kwr4069b7jvwc"; depends=[GenKern plotrix]; }; d3Network = derive2 { name="d3Network"; version="0.5.2.1"; sha256="1gh979z9wksyxxxdzlfzibn0ysvf6h1ij7vwpd55fvbwr308syaw"; depends=[plyr rjson whisker]; }; d3heatmap = derive2 { name="d3heatmap"; version="0.6.1.1"; sha256="0xx1lpp9qpkqh991ib0l9z1wn6j67jnggrhq5gr5sm63m7sjijwn"; depends=[base64enc dendextend htmlwidgets png scales]; }; + d3r = derive2 { name="d3r"; version="0.6.1"; sha256="1j69rm37j4q6dwhqprr9cmcl2x9qlmjas025kzl5fagb554dkgy8"; depends=[dplyr htmltools tidyr]; }; dChipIO = derive2 { name="dChipIO"; version="0.1.5"; sha256="1xrafw5h071d8rfqaic3gifc80jpiddjz5x6l2cr8kgjvph60gqh"; depends=[]; }; - dCovTS = derive2 { name="dCovTS"; version="1.0"; sha256="0lw4xdab231q83nmw2sx2abdwwqa0g7smzw14h6dabbzcdjw8h99"; depends=[doParallel energy foreach]; }; + dCovTS = derive2 { name="dCovTS"; version="1.1"; sha256="1pd50nfmfcqpi8zj20ngl0hc23qa4rabqhc1xci3ivyhs0valhsl"; depends=[doParallel energy foreach]; }; + dGAselID = derive2 { name="dGAselID"; version="1.0"; sha256="0b8n2kkpyqia6kpmgdi93917xf23r9aya33030iyk2wn18642qdj"; depends=[ALL Biobase genefilter MLInterfaces]; }; dHSIC = derive2 { name="dHSIC"; version="1.0"; sha256="1vyrfzgb0mjddy89jagf9zqkw18b83yn6v2amhb333vnd56644fk"; depends=[]; }; - dMod = derive2 { name="dMod"; version="0.1"; sha256="0170hvgngwxr0qfl7knmj0l2gg053xj5yfd5hkfyjnl6ivcsw3c9"; depends=[cOde ggplot2 trust]; }; - dad = derive2 { name="dad"; version="1.0.2"; sha256="06zgvspmq7vj23ir1yjxhavai282lxx14m8h18qjgwvw7q5c993y"; depends=[e1071 lattice]; }; - dae = derive2 { name="dae"; version="2.7-6"; sha256="1mh4kprzzi3s6n9lfz1gq0djm9inlkydq43qpvm7wljk2hbcdqnr"; depends=[ggplot2]; }; - daewr = derive2 { name="daewr"; version="1.1-6"; sha256="1gk7hs7m4ma505i6n8wf3c9ifzz93w8qljmb03xf13c9qchrqi61"; depends=[BsMD FrF2 lattice]; }; - daff = derive2 { name="daff"; version="0.1.4"; sha256="1g08m9qyrlwxdy9w18132dc9klz6ayw5jbn700vkzvqibfc1l7cx"; depends=[jsonlite V8]; }; + dMod = derive2 { name="dMod"; version="0.3.2"; sha256="1m0rpq78h2vhgl07jsk94hf03zj42wjc08hi6q5lqj77czwpaxfg"; depends=[cOde ggplot2 stringr trust]; }; + dSVA = derive2 { name="dSVA"; version="1.0"; sha256="0vy0flyg82x0n9vw6jf9f76qy84sp0wnis91faj37ac5hdv3pvsb"; depends=[sva]; }; + dad = derive2 { name="dad"; version="2.0.0"; sha256="0s9x8h6d3vy0y9in54abcm7y80qnywxbyh5l8ds4sv35y6j5j4pz"; depends=[e1071 lattice]; }; + dae = derive2 { name="dae"; version="2.7-20"; sha256="13nw3q0r17g1xsnnlggf4x6pd5ycg6vy34gy7pk5509mh0hfj38w"; depends=[ggplot2]; }; + daewr = derive2 { name="daewr"; version="1.1-7"; sha256="01n9g3adjk66wx9lm9gl6wa3y9ba5w0w0p5ayj8rx5ywxnm8fnvi"; depends=[BsMD FrF2 lattice]; }; + daff = derive2 { name="daff"; version="0.2.0"; sha256="1yfydnfghh8943sa206jps55par4nzghqvd7xqi8xm0zimn0p7rn"; depends=[jsonlite V8]; }; dafs = derive2 { name="dafs"; version="1.0-37"; sha256="1vdi57qaqdn39yf1ih2gzry02l289q4bffpksglsl4shs6bg2206"; depends=[s20x]; }; dagR = derive2 { name="dagR"; version="1.1.3"; sha256="13jyhwjvvrjjja18rqzfdcw9ck90qm5yjwd25nygxgdf1894y03b"; depends=[]; }; dagbag = derive2 { name="dagbag"; version="1.1"; sha256="1hpg7fs1yhnycziahscymkr0s3a2lyasfpj0cg677va73nrpdz12"; depends=[]; }; - dagitty = derive2 { name="dagitty"; version="0.1-9"; sha256="077dnhg6wwi82ncn369mygdam0a5db1521kfng68aba2h540zm1a"; depends=[boot jsonlite MASS V8]; }; - dams = derive2 { name="dams"; version="0.1"; sha256="0h0chh9ahsfvqhv1a0dfw88q7gdl1d0w11qcw0w4qmc2ipsl52i6"; depends=[RCurl]; }; - darch = derive2 { name="darch"; version="0.10.0"; sha256="0hs7w4p4azmbiif5b3fi4pngl33v16afwm2lnv8yhykh94y6y96q"; depends=[ff futile_logger]; }; + dagitty = derive2 { name="dagitty"; version="0.2-2"; sha256="11jpjr2l89glr9962mbhy4dfbdjs80nf603w90xx16s4qcmcsghc"; depends=[boot jsonlite MASS V8]; }; + dam = derive2 { name="dam"; version="0.0.1"; sha256="1b0fi3l8jxgpr9fwvi03giq7wm39msbh0c82ffgkh54a3bbf5blc"; depends=[]; }; + dams = derive2 { name="dams"; version="0.2"; sha256="0hf5s8i61r5q4h3s8dfmdl3vkj7v15ha59pjvpjqx3yihsgziqz9"; depends=[RCurl]; }; + darch = derive2 { name="darch"; version="0.12.0"; sha256="17nvxqxbbdv4qdallld5f2c6nhhszsz7ja04rhz5g3844s87bv2f"; depends=[caret futile_logger ggplot2 Rcpp reshape2]; }; + darksky = derive2 { name="darksky"; version="1.0.0"; sha256="03vdzxz5wxwsjz08rg18zsmrg4n7dpgrrm70zrqa5pmyq1swhh2n"; depends=[dplyr ggplot2 gridExtra gtable httr]; }; darts = derive2 { name="darts"; version="1.0"; sha256="07i5349s335jaags352mdx8chf47ay41q7b0mh2xjwn2h9kzgqib"; depends=[]; }; dashboard = derive2 { name="dashboard"; version="0.1.0"; sha256="1znqwvz49r47lp6q48qaas0s63wclgybav82a247qvcavzns3kip"; depends=[Rook]; }; - data_table = derive2 { name="data.table"; version="1.9.6"; sha256="0vi3zplpxqbg78z9ifjfs1kl2i8qhkqxr7l9ysp2663kq54w6x3g"; depends=[chron]; }; - data_tree = derive2 { name="data.tree"; version="0.3.0"; sha256="0imji1kvh9749sz3mqd9avqkcb73svw0vd9i8q5bwzqniqnkpzwi"; depends=[DiagrammeR R6 stringr]; }; + dat = derive2 { name="dat"; version="0.1.0"; sha256="1gpanrwgj7qgp4r033qfpk0a3xjk4ww1fa1bz80k9g4a0dizlcw0"; depends=[aoos data_table dplyr Formula magrittr progress tibble]; }; + data_table = derive2 { name="data.table"; version="1.10.4"; sha256="0ykbjr1x50ajxbri385vi3mnxj7zg1dcgh9y0snp341qmmmdypw6"; depends=[]; }; + data_tree = derive2 { name="data.tree"; version="0.7.0"; sha256="0rgpapxsqnbzjcifnz3p41b6j8h9x2yfixr5ryd03v8vzgikyf9b"; depends=[DiagrammeR R6 stringr]; }; + dataMaid = derive2 { name="dataMaid"; version="0.9.2"; sha256="13wim5375vlhaba2gawjb7lykzfj4py89cdhip44xaq19agg5675"; depends=[ggplot2 gridExtra haven pander rmarkdown robustbase]; }; dataQualityR = derive2 { name="dataQualityR"; version="1.0"; sha256="0f2410sd6kldv7zkqsmbz1js0p5iq7zwlnfwmmnlbrd303p35p3j"; depends=[]; }; - dataRetrieval = derive2 { name="dataRetrieval"; version="2.5.2"; sha256="0j8jjzillxagyrm55ymm7xi502cigyzfidrq732rih56904lww2y"; depends=[curl dplyr httr lubridate readr reshape2 XML]; }; + dataRetrieval = derive2 { name="dataRetrieval"; version="2.6.3"; sha256="1bgjn5j0kcd9ysi12pyqygv96vcd0ld67ika9z46lcx9n99zq35d"; depends=[curl dplyr httr lubridate readr reshape2 xml2]; }; datacheck = derive2 { name="datacheck"; version="1.2.2"; sha256="1i3n5g1b6ix8gpn4c74s7ll1dbrllrzgpb1f3hk449d6p4kmisq6"; depends=[Hmisc shiny stringr]; }; - datacheckr = derive2 { name="datacheckr"; version="0.1.1"; sha256="0b5abanxk5l2vigchw8ir7akl2n4lbjxqndkkkf2c1sh7sx5hs4i"; depends=[dplyr magrittr]; }; - datadr = derive2 { name="datadr"; version="0.8.5"; sha256="1nlwfaidpypznc0yqfwx2z040pl40fm2l2dm8qzb68klvabgd0kn"; depends=[codetools data_table digest dplyr hexbin magrittr]; }; - dataframes2xls = derive2 { name="dataframes2xls"; version="0.4.6"; sha256="18m4cbr3pxdn5ynxwd8klwwli3cyfjcn83pl17sn1rbavqlnkq5c"; depends=[]; }; - datafsm = derive2 { name="datafsm"; version="0.1.0"; sha256="1xnv55ls64b7b0ipr2zn5g6kg7f50bb5pnaxh3nz79yhawdr74fz"; depends=[caret GA Rcpp]; }; + datacheckr = derive2 { name="datacheckr"; version="0.1.2"; sha256="1z9r7f82rl6x63bl6mcvdvb0pbc6n0202vn9hh0lqf86qz30q7dp"; depends=[dplyr magrittr]; }; + datadr = derive2 { name="datadr"; version="0.8.6"; sha256="0fmywnxcvw31vfb9iaxqiw19ycnd98v41pdsdknabysr7fpnygfq"; depends=[codetools data_table digest dplyr hexbin magrittr]; }; + dataframes2xls = derive2 { name="dataframes2xls"; version="0.4.7"; sha256="10krlv0l5w021z0qd7rj93pzfjjmcjlda4xz4vq470bxbjmn1bss"; depends=[]; }; datamap = derive2 { name="datamap"; version="0.1-1"; sha256="0qm4zb9ldg4wz1a7paj5ilr1dhyagq81rk9l2v43hmkv52sssgkv"; depends=[DBI]; }; datamart = derive2 { name="datamart"; version="0.5.2"; sha256="0c0l157fzkcp30ch4ymaalcx18zhz6sa5srr50w9izhbx3pmldxp"; depends=[base64 gsubfn markdown RCurl RJSONIO XML]; }; dataonderivatives = derive2 { name="dataonderivatives"; version="0.2.1"; sha256="0hlvnnn3gs73m6gryr6ngmd9sdlamwmdmac3fawbbyna2if5b77n"; depends=[assertthat downloader dplyr httr jsonlite lubridate readr]; }; - datastepr = derive2 { name="datastepr"; version="0.0.1"; sha256="1dzx7mw9hl2f8q638m3vwva7mdlb59bgjc5rmpcjb5nxmylpx0vk"; depends=[dplyr lazyeval magrittr R6 rlist]; }; + dataone = derive2 { name="dataone"; version="2.0.1"; sha256="0n1c87wb15q7ysz0q5r69g57hk0vpd66m0w9wjbcjlyfn8whqa08"; depends=[base64enc datapack hash httr jsonlite parsedate plyr stringr uuid XML]; }; + datapack = derive2 { name="datapack"; version="1.0.1"; sha256="1ka4yxggdm9yify4vdbsrnxarjx0yab4p94xyzks72xqn6kpwarg"; depends=[digest hash redland uuid XML]; }; + datapasta = derive2 { name="datapasta"; version="1.1.0"; sha256="0cvcb074blc35kl709s6gpii353pfn1biscl5d9jma4ad9i0fi5a"; depends=[clipr readr rstudioapi]; }; + datarobot = derive2 { name="datarobot"; version="2.4.0"; sha256="1whlzakr01v5wrzv4fmpzml5xdk1vk48mmnhnh41hycxgssvlp04"; depends=[httr jsonlite yaml]; }; + dataseries = derive2 { name="dataseries"; version="0.1.0"; sha256="1z2hvksk9c9rnwi0r2i61sbkiwk3g2q8knxh08w6wkj9864payhw"; depends=[]; }; + datasets_load = derive2 { name="datasets.load"; version="0.1.0"; sha256="029rxg0h17nszkxgq5kjd0njymb8pgdsabmz5slshzd2ijjh82jz"; depends=[DT miniUI shiny]; }; + datastepr = derive2 { name="datastepr"; version="0.0.2"; sha256="039yggdj8jdici7hwmkjwgix45lvwjl7rw5h2rfzsm9xaq6vw1z2"; depends=[dplyr lazyeval magrittr R6 tibble]; }; datautils = derive2 { name="datautils"; version="0.1.4"; sha256="0adg87p9rzz62cm0s80x71mhsg3yfg93gskv1hs1l8gaj78zd1y1"; depends=[deldir gplots gtools]; }; dataview = derive2 { name="dataview"; version="2.1.1"; sha256="1nn33h5c1h4a3zm1xm7sdz4s6sy0f3r53jhm7bv6qk7aiylwqf6v"; depends=[data_table xtermStyle]; }; - date = derive2 { name="date"; version="1.2-34"; sha256="066zsddpw87x1bhl3479k6fd1wrl3x91n5rd454diwmwq2s8i5qb"; depends=[]; }; + date = derive2 { name="date"; version="1.2-37"; sha256="0321kqvpy5cvl8hmm6pd0pyjpi30glm8hvw60mrql6y28sn6pqhl"; depends=[]; }; dave = derive2 { name="dave"; version="1.5"; sha256="0sw9hc4y9wdfbnnk6isg7z7sky6ni68pkjxdlrph5m7jcyqphz96"; depends=[labdsv vegan]; }; dawai = derive2 { name="dawai"; version="1.2.1"; sha256="0i0vgd4kia2hgx88rjdyi0y8hikzii4mwgal46c9iiqb6gmf8vrj"; depends=[boot ibdreg mvtnorm]; }; dbConnect = derive2 { name="dbConnect"; version="1.0"; sha256="1vab5l4cah5vgq6a1b9ywx7abwlsk0kjx8vb3ha03hylcx546w42"; depends=[gWidgets RMySQL]; }; dbEmpLikeGOF = derive2 { name="dbEmpLikeGOF"; version="1.2.4"; sha256="0vhpcxy702cp3lvlif2fzmvccys8iy7bv1fbg6ki2l8bvn2f7c5p"; depends=[]; }; dbEmpLikeNorm = derive2 { name="dbEmpLikeNorm"; version="1.0.0"; sha256="0h5r2mqgallxf9hin64771qqn9ilgk1kpsjsdj2dqfl3m8zg967l"; depends=[dbEmpLikeGOF]; }; - dbarts = derive2 { name="dbarts"; version="0.8-5"; sha256="1w170mdfl5qz7dv1p2kqx0wnkmbz2gxh2a4p7vak1nckhz2sgpgn"; depends=[]; }; + dbarts = derive2 { name="dbarts"; version="0.8-7"; sha256="0wmwg8g8xy83yv4wpdpas3jjs5jxx258wh9463q30a8hnr3izc0l"; depends=[]; }; + dbfaker = derive2 { name="dbfaker"; version="0.1.0"; sha256="00n2z4q5drpg26pw826i16rg07m7w66a0r466q2lrl14hxs4rcaq"; depends=[assertive DBI dplyr foreach parsedate RPostgreSQL tidyr]; }; + dbhydroR = derive2 { name="dbhydroR"; version="0.2-2"; sha256="06m1llg1il0v4v8yi62z26hglzrhzw009y81xpb9zaphcviqp2qr"; depends=[httr reshape2 XML]; }; dblcens = derive2 { name="dblcens"; version="1.1.7"; sha256="02639vyaqg7jpxih8cljc8snijb78bb084f4j3ns6byd09xbdwcw"; depends=[]; }; - dbmss = derive2 { name="dbmss"; version="2.2-4"; sha256="13dvdylra6ladpvgm3imad6wqqb1gaqhbb3s5l2lywx58kxrpnl8"; depends=[cubature Rcpp RcppParallel spatstat]; }; - dbscan = derive2 { name="dbscan"; version="0.9-6"; sha256="1a7x190lsz53p5n54zcmv02940ikpnc3jw8irybcal79yf0nqmb9"; depends=[Rcpp]; }; + dbmss = derive2 { name="dbmss"; version="2.3-0"; sha256="02dmm7djm4k5c9cz0dcs5fkdnld6xmj110619yry2z307irdqamk"; depends=[cubature Rcpp RcppParallel spatstat]; }; + dbscan = derive2 { name="dbscan"; version="1.0-0"; sha256="0yqng42d7nl4x2qnkpvv5cj426gzdx872gcwfblys73hw20v09ky"; depends=[Rcpp]; }; dbstats = derive2 { name="dbstats"; version="1.0.4"; sha256="1miba5h5hkpb79kv9v9hqb5p66sinxpqvrw9hy9l5z4li6849yy1"; depends=[cluster pls]; }; dcGOR = derive2 { name="dcGOR"; version="1.0.6"; sha256="0rvwa25r23yayx1i6xhkfaw2z85d2iyfx3slg3aq1m0fa7kj380p"; depends=[dnet igraph Matrix]; }; dcemriS4 = derive2 { name="dcemriS4"; version="0.55"; sha256="15x4hjc5fwpn80h90q5x9a3p84pp3mxsmcx4hq5l0j52l9dy9nv3"; depends=[oro_nifti]; }; @@ -3674,23 +4534,29 @@ in with self; { dcmr = derive2 { name="dcmr"; version="1.0"; sha256="1a89wr1n8sykjbwa316zlmcffaysksrqnbd89anxqj8sgw9xv6jq"; depends=[ggplot2 KFAS plyr reshape2 tableplot]; }; dcv = derive2 { name="dcv"; version="0.1.1"; sha256="12c716x8dnxnqksibpmyysqp2axggvy9dpd55s9bhnsvqvi6dshj"; depends=[lmtest]; }; ddR = derive2 { name="ddR"; version="0.1.2"; sha256="00mb9xq69dvl50v5429nw0mjazgjwh2sp98w8n2cwhhamjgp42k9"; depends=[Rcpp]; }; - ddalpha = derive2 { name="ddalpha"; version="1.1.3.1"; sha256="0vi7crw30mfpllmspicilz1vwhbsmlzx2mfs53kv2hs8vj7r1in8"; depends=[BH class MASS Rcpp robustbase]; }; + ddalpha = derive2 { name="ddalpha"; version="1.2.1"; sha256="0nsd515x6bap1qpfyx141hyldmpmyasnhv0f8s9dj6zcklp89af4"; depends=[BH class MASS Rcpp robustbase]; }; ddeploy = derive2 { name="ddeploy"; version="1.0.4"; sha256="06s4mn93sl33gldda9qab8l3nqig8zq0fh1s2f98igsysmn31br5"; depends=[httr jsonlite]; }; - ddpcr = derive2 { name="ddpcr"; version="1.1.2"; sha256="0xz8ms77k24k47scs9x4vipdj370id783dxk30rdi94xcg8hns6m"; depends=[dplyr DT ggplot2 lazyeval magrittr mixtools plyr readr shiny shinyjs]; }; - ddst = derive2 { name="ddst"; version="1.03"; sha256="0zbqw4qmrh80jjgn8jzbnq3kykj1v5bsg6k751vircc0x9vnig3j"; depends=[evd orthopolynom]; }; - deSolve = derive2 { name="deSolve"; version="1.13"; sha256="1amxkzakk5ipz06z50wm61i5p4a5kfvjqad5whwp6n5xq5msx621"; depends=[]; }; - deTestSet = derive2 { name="deTestSet"; version="1.1.2"; sha256="142261xjlz6h9vakiks04rz7hgv9b5j6s77acavd5s5mpi51ysh7"; depends=[deSolve]; }; + ddpcr = derive2 { name="ddpcr"; version="1.6"; sha256="1jwrggj9cbq31z8qcfhfm3zb4z7jir8kkmjg7yqs5nmpl41pv5jn"; depends=[dplyr DT ggplot2 lazyeval magrittr mixtools plyr readr shiny shinyjs]; }; + ddst = derive2 { name="ddst"; version="1.4"; sha256="1y0immm337adkd2bjx8c5pf02w9wysv3gj26f4qf0jiba0f2wk8n"; depends=[evd orthopolynom]; }; + deBInfer = derive2 { name="deBInfer"; version="0.4.1"; sha256="05khyjpyxwrm9q8jsysffgsjpjbw76w9rrl7i8ia0yc9lv0bzjc9"; depends=[coda deSolve MASS mvtnorm PBSddesolve plyr RColorBrewer truncdist]; }; + deSolve = derive2 { name="deSolve"; version="1.14"; sha256="1c4yv5xjk36xwjs0ywxfas1f2xcg05ppf4380s0l3k7gl7vx44g4"; depends=[]; }; + deTestSet = derive2 { name="deTestSet"; version="1.1.5"; sha256="07wbgniwkpp0yry6wvchvszr8isxs1i9k6km951r5c009w1iviwk"; depends=[deSolve]; }; + deadband = derive2 { name="deadband"; version="0.1.0"; sha256="02pq3d0l0wy8bdlyfir3zf46j1ascx4qajyq5cf28yl62q6ngq5d"; depends=[TTR]; }; deal = derive2 { name="deal"; version="1.2-37"; sha256="1nn2blmxz3j5yzpwfviarnmabbyivc25cbfhcf814avrhpysvpxa"; depends=[]; }; deamer = derive2 { name="deamer"; version="1.0"; sha256="1xbxr78n6s1yhf192ab4syi1naqlwl9z4cxzchrkw80q7bxqfiz8"; depends=[]; }; debug = derive2 { name="debug"; version="1.3.1"; sha256="0mpwi6sippxyr1l8xf48xqv6qw6pmfkxs13k1gjyd7bkzlbchgqd"; depends=[mvbutils]; }; - decisionSupport = derive2 { name="decisionSupport"; version="1.101.1"; sha256="08qcvdwp0wgspnfnlhkpxz3p6y43pjf32p185knw8g81wr1950ip"; depends=[msm mvtnorm]; }; + debugme = derive2 { name="debugme"; version="1.0.1"; sha256="14yhkvh05748jfn2dsdllflsjnjljhjm8kkzzqb7zcp6qjylwcys"; depends=[crayon]; }; + decision = derive2 { name="decision"; version="0.1.0"; sha256="13d0yyg5zp7n3r92l0l1dsffxfph6vacrlzga9rz41l5pja72z6g"; depends=[]; }; + decisionSupport = derive2 { name="decisionSupport"; version="1.101.2"; sha256="0zmf87wjrpkg12ix8dz3asrwldwvclj1ifvzff46zgipdm3viqr0"; depends=[msm mvtnorm]; }; decode = derive2 { name="decode"; version="1.2"; sha256="1qp0765gl3pgfdzjwj7icf3zminxxmrlw6gx3vj51y6c2y5ws4as"; depends=[]; }; - decompr = derive2 { name="decompr"; version="4.1.0"; sha256="1agzfy7iyyzh71pb56l7438bvpsx0q2z9mxh16fc8mfnywcl2jr2"; depends=[]; }; + decoder = derive2 { name="decoder"; version="1.1.12"; sha256="0jacp5fqi3l87a86kzhivwd7bl9ndcpymw1vkzmr9r5my8d119pk"; depends=[backports]; }; + decompr = derive2 { name="decompr"; version="4.5.0"; sha256="1kbk4z1pr1j4i1sgfkjxzjy2j2fcmrf3vacnrpv1fba2ib10619k"; depends=[]; }; decon = derive2 { name="decon"; version="1.2-4"; sha256="1v4l0xq29rm8mks354g40g9jxn0didzlxg3g7z08m0gvj29zdj7s"; depends=[]; }; - deconstructSigs = derive2 { name="deconstructSigs"; version="1.6.0"; sha256="1gs8ym0h99zh0ccd8akl72sj5lbangadh3fn5vwb6al7qgzpflfz"; depends=[BSgenome BSgenome_Hsapiens_UCSC_hg19 reshape2]; }; + deconstructSigs = derive2 { name="deconstructSigs"; version="1.8.0"; sha256="014x0nb23jb98666kaav2phkvmkr38pi38jv0dqd4jv7zp0gdf1a"; depends=[BSgenome BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb reshape2]; }; + deconvolveR = derive2 { name="deconvolveR"; version="1.0-3"; sha256="1b6ghds0mj9nv4nypfx0w6sm6q9k83mbprk546ird3pza6ncjqbi"; depends=[]; }; deducorrect = derive2 { name="deducorrect"; version="1.3.7"; sha256="10lvhdnnc6xiy20hy6s5rpqcvilj8x0y6sn92rfjkdbfsl00sslp"; depends=[editrules]; }; - deductive = derive2 { name="deductive"; version="0.1.0"; sha256="1ivjn7v92v64gkbij5yqsr1090gnxjxxvnvmns1dwvycz32va6dp"; depends=[lintools stringdist validate]; }; - deepboost = derive2 { name="deepboost"; version="0.1.4"; sha256="08h1r9ganbcy2bljs7kccws16zs9ns0n0qspj8qczf87ya93vhfj"; depends=[Rcpp]; }; + deductive = derive2 { name="deductive"; version="0.1.1"; sha256="09illy2zxbn7xi3vl4m0d40h1dsci3qfwhyd3wqdkb89grbysacq"; depends=[lintools stringdist validate]; }; + deepboost = derive2 { name="deepboost"; version="0.1.5"; sha256="1varzk3dlsxl8y1p4cblw3ivk5h088agsxar02jbl9hs3r6pj17l"; depends=[Rcpp]; }; deepnet = derive2 { name="deepnet"; version="0.2"; sha256="09crwiq12wzwvdp3yxhc40vdh7hsnm4smqamnk4i6hli11ca90h4"; depends=[]; }; deformula = derive2 { name="deformula"; version="0.1.1"; sha256="0h85yzl8kvjwrn1mkzyblvknf7gg8kx8y85qnvkwfbr9ik42ngn1"; depends=[]; }; degenes = derive2 { name="degenes"; version="1.1"; sha256="1xxn5j06qizywimrp1pl8z3yjdy1a167b9jnm77gmv87rp6j240c"; depends=[]; }; @@ -3700,52 +4566,66 @@ in with self; { deltaPlotR = derive2 { name="deltaPlotR"; version="1.5"; sha256="0hbaibl4b50pg9ypyhz4700w6kir4jiyyl0230a8hjmb92aqn303"; depends=[MASS]; }; demi = derive2 { name="demi"; version="1.1.2"; sha256="04dq4db9ibvv91nm0gz8dfbgv1gpmalf9hv6i78dwhh1xzjg1mig"; depends=[affxparser affy devtools oligo plyr R_utils]; }; deming = derive2 { name="deming"; version="1.0-1"; sha256="00v59qb6qwbwsvcwi59d0c0g3czfz1190ccj4dx6yarizr4g6cy8"; depends=[boot]; }; - demoKde = derive2 { name="demoKde"; version="0.9-3"; sha256="1nkvsjms1gfvjz5l7zza0cgx4yqmn2kgnax44pysn0zqmhfny8bw"; depends=[]; }; - demography = derive2 { name="demography"; version="1.18"; sha256="17r7sz5ikngc4qg495wmn99xawmllpx7rw2gpv8q8bypbc47wlfv"; depends=[cobs forecast mgcv RCurl strucchange]; }; - dendextend = derive2 { name="dendextend"; version="1.1.8"; sha256="0ssf0fzs1h2jc4p8p2z9fyf4f0p9942z3zrkawyafddbixkkz7vh"; depends=[magrittr whisker]; }; + demoKde = derive2 { name="demoKde"; version="0.9-4"; sha256="0p4v808m42wbv8ibdfqzm43cbbg0yl452wnm1mzqq2n37z6yljkr"; depends=[]; }; + demography = derive2 { name="demography"; version="1.19"; sha256="08cfvsvv6ayxy93vihavyb3lddgwfdlwrb2x4is5fxids79lpm9x"; depends=[cobs forecast ftsa mgcv rainbow RCurl strucchange]; }; + dendextend = derive2 { name="dendextend"; version="1.4.0"; sha256="0piqa8jvzarkkxmrv8hz11gg1jzm75b2fbrmd3nkwv4fcjlzpa0x"; depends=[fpc ggplot2 magrittr viridis whisker]; }; dendextendRcpp = derive2 { name="dendextendRcpp"; version="0.6.1"; sha256="125kjlfcj7y282j5g62c6j5hflvwngrm70waxym0lzr7xldwx7bk"; depends=[dendextend Rcpp]; }; dendroextras = derive2 { name="dendroextras"; version="0.2.1"; sha256="0k1w374r4fvfcbzhrgcvklccjggyz755z7wc2vqfi3c5hvdb9ns4"; depends=[]; }; dendrometeR = derive2 { name="dendrometeR"; version="1.0.0"; sha256="1par27ipgbfbrmdlwvkf82i5dgnfrcawmavakrf8lplin2hhb7gs"; depends=[forecast pspline zoo]; }; dendsort = derive2 { name="dendsort"; version="0.3.3"; sha256="1m4qh79ppfvipmbi8m8vwq0hqmwwipbg5izihz5j6x8a4g5i6iym"; depends=[]; }; - denovolyzeR = derive2 { name="denovolyzeR"; version="0.1.0"; sha256="0ys8pi3wp2cvywsnh07wldv6vcb8sn7f1divpaw8f6gnw7mnhimd"; depends=[dplyr reshape]; }; + denoiseR = derive2 { name="denoiseR"; version="1.0"; sha256="094nknr3hyx4kv18vnpdzrcpmfb4r7x9jgrp3p6x4nwrgzdh3r95"; depends=[FactoMineR irlba Matrix]; }; + denovolyzeR = derive2 { name="denovolyzeR"; version="0.2.0"; sha256="03ya5clzqp12lfhw073ri0pwgxn53a6pvnais317a8bv1yinxspb"; depends=[dplyr reshape2]; }; denpro = derive2 { name="denpro"; version="0.9.2"; sha256="19hrpfd44jaavq81dbyj3frris4aflfc8lig0471whv0pc6jci2k"; depends=[]; }; densityClust = derive2 { name="densityClust"; version="0.2.1"; sha256="0blq6h6x071bcy3shr77b3bwq1im0013vbg7gckdhljm859n07bh"; depends=[Rcpp]; }; + densratio = derive2 { name="densratio"; version="0.0.3"; sha256="07da5spbzr8x7sv6pdknc64a5zhs3dgnpcx4s2v68vc31xsd0gqd"; depends=[]; }; denstrip = derive2 { name="denstrip"; version="1.5.3"; sha256="10h8ivs7nd6gkf93zvqzqjb1lzfabvvs182636m67f86jfn6d4y4"; depends=[]; }; - depend_truncation = derive2 { name="depend.truncation"; version="2.4"; sha256="09jcg6gr4dy0ayayn8qvbgncnw6v76xzif90c7v64a09snhh8qv6"; depends=[mvtnorm]; }; + depend_truncation = derive2 { name="depend.truncation"; version="2.5"; sha256="0g9p7a6p15shd1cl5rwxzi2m5llmj22hk94f2d9g693j3gccfzfa"; depends=[mvtnorm]; }; depmix = derive2 { name="depmix"; version="0.9.14"; sha256="12mvsd9zab55yg02r309h5i7hldwhh3bd60bzcvwip8vsmym5611"; depends=[MASS]; }; depmixS4 = derive2 { name="depmixS4"; version="1.3-3"; sha256="0ls30v59hzyd684w4a3aygq1i5m8iq4gxsh8mmjxdq8qx0v84hk2"; depends=[MASS nnet Rsolnp]; }; - depth = derive2 { name="depth"; version="2.0-0"; sha256="1aj4cch3iwb6vz0bzj4w5r6jp2qs39g8lxi2nmpbi3m7a6qrgr2q"; depends=[abind circular rgl]; }; + depth = derive2 { name="depth"; version="2.1-1"; sha256="17fxv4a5fbb65p7kmb4iakik5ng6401y7gmknkfr66fmjq65i1sm"; depends=[abind circular rgl]; }; depth_plot = derive2 { name="depth.plot"; version="0.1"; sha256="0zjg9iyqmcnkvwc9w2j7lmk3k9nsg6n8m6vq5x44d1bp4g2gr6jv"; depends=[mvtnorm]; }; depthTools = derive2 { name="depthTools"; version="0.4"; sha256="1699r0h1ksgrlz9xafw2jnqfsc7xs0yaw97fc6dv3r11x6gxk00y"; depends=[]; }; - dequer = derive2 { name="dequer"; version="1.0"; sha256="1xf2kl6ppgsplqwhxxyak39575bjijh81snq534yndf31pdqqhd7"; depends=[]; }; + dequer = derive2 { name="dequer"; version="2.0-0"; sha256="1cvc201g6jc0y09vccswsvvwlmxi7w8raffpald4b3pin10zfr6q"; depends=[]; }; + derivmkts = derive2 { name="derivmkts"; version="0.2.2"; sha256="00bcffqzzsm2h4gfwri772q8i7h40xhv07wl8xj682fnlk246ggs"; depends=[mnormt]; }; + desc = derive2 { name="desc"; version="1.1.0"; sha256="0mc1jmiwqyj7s6gzxz6fyamzjpmdn3rpfpllby2fq11ml30c6jpr"; depends=[assertthat crayon R6 rprojroot]; }; descomponer = derive2 { name="descomponer"; version="1.2"; sha256="08hc3p4l8dy1h2z8ijifwlgidmac9b29g1k725yzwzbdr5jzvnzl"; depends=[taRifx]; }; - descr = derive2 { name="descr"; version="1.1.2"; sha256="1bqr63s2w0gak117506f5v7k9wfj08cn6jy6idw5ii7x6jjh6xx7"; depends=[xtable]; }; + descr = derive2 { name="descr"; version="1.1.3"; sha256="0fp91gbxxxvn2hqdyddhb3x85031wgq7gnqrhzjr956prlv086r6"; depends=[xtable]; }; describer = derive2 { name="describer"; version="0.2.0"; sha256="1pjyihmn4gkaamixsc3qwynsc02pwv9bgn6s7z7acmmsybhhs6xn"; depends=[]; }; + descriptr = derive2 { name="descriptr"; version="0.1.0"; sha256="11fq98zpzvjgzihh4431javsznvhqgfrhf86m33j6fnxh3gg4d0z"; depends=[dplyr magrittr]; }; deseasonalize = derive2 { name="deseasonalize"; version="1.35"; sha256="1fjsa7g34dckjs6mx9b10m99byxagggm0p9pw2f1vmpjqlasin0l"; depends=[FitAR lattice]; }; - desiR = derive2 { name="desiR"; version="1.2"; sha256="0hznl6qf5np797j7a63sgggxrkz483fcfp42525vswgw3qsjvxlp"; depends=[]; }; + desiR = derive2 { name="desiR"; version="1.2.1"; sha256="0ghcv96bbwn74mka4dpf2lkpnlikjn3q6lx2sl8bbw77nriap0n6"; depends=[]; }; designGG = derive2 { name="designGG"; version="1.1"; sha256="1x043j36llwd7kd4skbpl2smz2ybsxjqf5yd1xwqmardq60gdv2w"; depends=[]; }; designGLMM = derive2 { name="designGLMM"; version="0.1.0"; sha256="0ya246mqclkhg8cq6f5mzqn67qks22f3fribyjcvhrx395n0f21v"; depends=[]; }; - designmatch = derive2 { name="designmatch"; version="0.1.1"; sha256="0s0mlisczf15zdw7jcl6lc4rhbzhfbpjjp2k64sjlvykcmzx5f04"; depends=[lattice MASS Rglpk slam]; }; - desirability = derive2 { name="desirability"; version="1.9"; sha256="1p3w4xk4is22gqgy2gyxj80vib8s40lgllqc2fnz66kb2cln10n6"; depends=[]; }; + designmatch = derive2 { name="designmatch"; version="0.2.0"; sha256="1l6504yfrlx24n7r0dd6g66rzjg35yz3s4niyg25mc8biwqags6y"; depends=[lattice MASS Rglpk slam]; }; + desirability = derive2 { name="desirability"; version="2.1"; sha256="094gxvp6a60lfcc0a0gk9rv1p6ajnzq9m58sy8cvhcj5337g4fmk"; depends=[]; }; desire = derive2 { name="desire"; version="1.0.7"; sha256="0jmj644nj6ck0gsk7c30af9wbg3asf0pqv1fny98irndqv508kf6"; depends=[loglognorm]; }; - desplot = derive2 { name="desplot"; version="1.0"; sha256="1x8x0nqmirmx4l8cdl5fqy01j5ljlnldjh5yz06qwjv4ykqd41dc"; depends=[lattice reshape2]; }; + desplot = derive2 { name="desplot"; version="1.1"; sha256="0lqamq90hajrz43crych8a1k5m645ljhy1rmxjk9vyl4hwrbk5dc"; depends=[lattice reshape2]; }; detect = derive2 { name="detect"; version="0.4-0"; sha256="119kvkgpgd12v31ps1bg5dmc9djkaqzls548nlrvn1pbmahfnfx5"; depends=[Formula pbapply]; }; detector = derive2 { name="detector"; version="0.1.0"; sha256="010i063b94hzx7qac8gpl67gmk7hzgqm9i1c7pbbw4la3wcd9lz7"; depends=[stringr]; }; detrendeR = derive2 { name="detrendeR"; version="1.0.4"; sha256="1z10gf6mgqybb9ml6z3drq65n7g28h2pqpilc2h84l6y76sy909c"; depends=[dplR]; }; - devEMF = derive2 { name="devEMF"; version="2.0"; sha256="19wraakvf7xsf1i108dz3ipl1hdixgwa6h0bizxfyajw5yqmw8mw"; depends=[]; }; - devtools = derive2 { name="devtools"; version="1.10.0"; sha256="11x51bqhjwypbxv5sfnrnxx06b92k8kzmmx7zrwk3537r072b6pa"; depends=[digest git2r httr jsonlite memoise rstudioapi whisker withr]; }; + detzrcr = derive2 { name="detzrcr"; version="0.1.2"; sha256="0hw88kizz0kcz4i1lqz30gixiq7im91875p2wpvbnzyxhs3n04vi"; depends=[ggplot2 MASS shiny]; }; + devEMF = derive2 { name="devEMF"; version="3.3-1"; sha256="1s0rmw3gsyj28ywlkfdjr98fr7cjhmzb0fq5qn9s91dw9a3fx8zf"; depends=[]; }; + devRate = derive2 { name="devRate"; version="0.1.1"; sha256="088i9m9ys59p2a961183ac2w6wa0idb4xvyfnxqz9rpiins8d0bg"; depends=[]; }; + devtools = derive2 { name="devtools"; version="1.12.0"; sha256="1m5g6xnq7r4s3a0nlpa88fp5x6c8nl5icnp4869y5zwdk2ijqgla"; depends=[digest git2r httr jsonlite memoise rstudioapi whisker withr]; }; + dexter = derive2 { name="dexter"; version="0.1.7"; sha256="1bpj6izqgp4mi9h4kpm9xhnm8h6j9lvdizr31w51ljs8lkphzpwd"; depends=[colorspace plyr reshape2 RSQLite]; }; df2json = derive2 { name="df2json"; version="0.0.2"; sha256="10m7xn7rm4aql1bzpckjcx5kvdw44m1pxgzqkgkd40lzqb1cwk18"; depends=[rjson]; }; - dfcomb = derive2 { name="dfcomb"; version="2.1-5"; sha256="1dswkx3wqcpil6xs6xifr596iqy15ld473hdlrb6p760alqzx13s"; depends=[BH Rcpp RcppArmadillo RcppProgress]; }; + dfcomb = derive2 { name="dfcomb"; version="2.1-6"; sha256="14jyagnrsbzdwcfy0z6c9gwbv40xrnany43ylpks6qgnq4rya7a2"; depends=[BH Rcpp RcppArmadillo RcppProgress]; }; dfcrm = derive2 { name="dfcrm"; version="0.2-2"; sha256="1kwgxfqnz2bcicyb27lp6bnvrj30lqjpn5fg7kaqshgkj53g0s4f"; depends=[]; }; dfexplore = derive2 { name="dfexplore"; version="0.2.1"; sha256="04nbhn59l1kas26nwj4qflkjvvr33sj1mm7zg7fhvya85gvlhrbf"; depends=[ggplot2]; }; - dfmta = derive2 { name="dfmta"; version="1.3-3"; sha256="0rmgjwqn4qwhs0yfzq417k1w0cgya903a8g3zm6p3fksmvyz4hyk"; depends=[BH Rcpp RcppArmadillo RcppProgress]; }; - dfoptim = derive2 { name="dfoptim"; version="2011.8-1"; sha256="19j0h5xdrbmykz2nrjrwqwaw7466zvqaiwafrm1jc12mk5azfcqx"; depends=[]; }; + dfmta = derive2 { name="dfmta"; version="1.3-4"; sha256="18lmgpv6jhjs15difiq0jck6kf898ngr2g13wrf3y5s5xc70iwkp"; depends=[BH Rcpp RcppArmadillo RcppProgress]; }; + dfoptim = derive2 { name="dfoptim"; version="2016.7-1"; sha256="1hs0ln5iz3h1x1b27jai83r3gad6698zwhr2jgpviiv9zwhic8c2"; depends=[]; }; + dfphase1 = derive2 { name="dfphase1"; version="1.1.1"; sha256="0bk4bl5lqd7m4mzk6kg71fmh918wcy85zghr3lyayxlk30fl4ppc"; depends=[lattice Rcpp robustbase]; }; + dfpk = derive2 { name="dfpk"; version="2.0.0"; sha256="0nn0m4kvjsyv48xribkab0jnbv0db17aan9flnkg5jh4s03pg9sc"; depends=[BH dfcrm ggplot2 Rcpp RcppEigen rstan StanHeaders]; }; dga = derive2 { name="dga"; version="1.2"; sha256="13mfampnghcs5xplzq69bw948lqhw561pn54j3gb0ydsg5bm5vmr"; depends=[chron]; }; + dggridR = derive2 { name="dggridR"; version="0.1.11"; sha256="179pi20rs0mp5aqydhw34wczrkyavndaaccjr017gp456gza1a83"; depends=[dplyr ggplot2 rgdal]; }; dglars = derive2 { name="dglars"; version="1.0.5"; sha256="02g8x4p98jv3cfwfxvh68aivb72651w4977g4xqksq0p4nqcs636"; depends=[]; }; - dglm = derive2 { name="dglm"; version="1.8.2"; sha256="1bxdvalwinn814rdsy7pjrx87wpz7kl67w1136rnf1sc8yly6j5f"; depends=[statmod]; }; + dglm = derive2 { name="dglm"; version="1.8.3"; sha256="0vj4vddqcrjzgqsi6zsxm22gj5pa5dm50wcxip4vi8kbwxaahnaj"; depends=[statmod]; }; dgmb = derive2 { name="dgmb"; version="1.2"; sha256="1r5md917wipx78n63x87fpvsc3h87c68cpacrrs9dhss199p1a5k"; depends=[abind MASS]; }; + dgodata = derive2 { name="dgodata"; version="0.0.2"; sha256="03cyiig8pn7fdkrkrd29cwy5g63bp57bpl9jmdxfi03smngzbz0m"; depends=[]; }; dgof = derive2 { name="dgof"; version="1.2"; sha256="02qnb3i131hx05k8l5n3xbl5sqmmc2fh19bsgcacgj8ixs4wyjvi"; depends=[]; }; - dhglm = derive2 { name="dhglm"; version="1.5"; sha256="0n3878bx8vwf7na6plvdg9m1rd9qg7450g6mpx955d3s2bg320x0"; depends=[boot Matrix numDeriv]; }; + dhga = derive2 { name="dhga"; version="0.1"; sha256="1n48irj53g3kn451ak5ly50wxdn7qmzi2kib8clsvcx2n7mvpgcm"; depends=[VennDiagram]; }; + dhglm = derive2 { name="dhglm"; version="1.6"; sha256="0xb9kn87zv4xc9rwq0w6hxsc47vhdx59akjp4nv1ffz69y03h5wv"; depends=[boot MASS Matrix numDeriv]; }; + diagis = derive2 { name="diagis"; version="0.1.0"; sha256="12k4z0j5nmacy8ddi8ddyn8fabg6k728hms6x1sjnghr2wwns5cw"; depends=[ggplot2 gridExtra Rcpp RcppArmadillo]; }; diagonals = derive2 { name="diagonals"; version="0.4.0"; sha256="03n6lm0hkgylswgj1qlgrjigm7basl5frip99mxx19mvaqa3bhqy"; depends=[]; }; diagram = derive2 { name="diagram"; version="1.6.3"; sha256="1iga574r31hz7g50nmicbah4rj4l46w6lgw3sz1b69iv6hpp7sq1"; depends=[shape]; }; diaplt = derive2 { name="diaplt"; version="1.2.1"; sha256="0pya6rqzsvc5nd3smhydvabarglc4nn04q605vbllmbhq9rv00pa"; depends=[]; }; @@ -3754,105 +4634,126 @@ in with self; { dicionariosIBGE = derive2 { name="dicionariosIBGE"; version="1.6"; sha256="1rss1ydhcn6sma2lmlpq6s0h3dglwc20w499x1jzkcjnzc1rc7gl"; depends=[]; }; dielectric = derive2 { name="dielectric"; version="0.2.3"; sha256="1p1c0w7a67zxp1cb99yinylk5r1v89mmpfybcy94ydydhydbhivk"; depends=[]; }; diezeit = derive2 { name="diezeit"; version="0.1-0"; sha256="0rq1k08byvqn99wpql7drnrcxlzcqrcxixh7bczbc8dv1hhsgk9i"; depends=[brew httr jsonlite]; }; - difR = derive2 { name="difR"; version="4.6"; sha256="1803j0ql1g8gdy9i0wy4sz9sbl52dqjqcwbnknyrb34r51jmij5k"; depends=[lme4 ltm]; }; + difNLR = derive2 { name="difNLR"; version="1.0.0"; sha256="123r6r3n90x87p2pzsfbrcmfqjv4vb9jm0s4bq6byk1pbhsrw2ah"; depends=[CTT ggplot2 nnet reshape2]; }; + difR = derive2 { name="difR"; version="4.7"; sha256="17i8l4z7dw8nfr4b5pc72l1qm7byjcflh58kasafx9kxyvfgz258"; depends=[lme4 ltm]; }; diffEq = derive2 { name="diffEq"; version="1.0-1"; sha256="1xmb19hs0x913g45szmm26xx5xp85v182wqf0lnl4raxaf47yhkm"; depends=[bvpSolve deSolve deTestSet ReacTran rootSolve shape]; }; diffIRT = derive2 { name="diffIRT"; version="1.5"; sha256="0kip6wz9l9q80qsqwf32pwz7d9vqin6dgfwf0nxlrlzf8xjsxgim"; depends=[statmod]; }; diffdepprop = derive2 { name="diffdepprop"; version="0.1-9"; sha256="0mgrm1isr26v2mcm6fkzc7443ji00vpnqmw4zngx81n7442b3cl2"; depends=[gee PropCIs rootSolve]; }; diffeR = derive2 { name="diffeR"; version="0.0-4"; sha256="08g21h3yq8rm2i6ah364nfadg7hnghc21jnpi5aqwzqyd2v93b67"; depends=[ggplot2 raster rgdal]; }; + diffobj = derive2 { name="diffobj"; version="0.1.6"; sha256="0f6wskh3nl8ngh195x8wiv1g0fc690r4zh4ypkraqd2c6x1iskg7"; depends=[crayon]; }; diffr = derive2 { name="diffr"; version="0.0.1"; sha256="0lhk9vm9gp0pwzsniy49dgq9vd4c1bxf8c8w8ib4b4fg5jq3hfwj"; depends=[htmlwidgets]; }; diffractometry = derive2 { name="diffractometry"; version="0.1-8"; sha256="1m6cyf1kxm9xf1z4mn4iz0ggiy9wcyi8ysbgcsk7l78y7nqh1h99"; depends=[]; }; + diffrprojects = derive2 { name="diffrprojects"; version="0.1.14"; sha256="1mnqf5zs1w8dx9y5iwn4blyzb9j60ayzc04zxj5l8804nd527n25"; depends=[dplyr hellno magrittr R6 Rcpp RSQLite rtext stringb stringdist]; }; + diffrprojectswidget = derive2 { name="diffrprojectswidget"; version="0.1.5"; sha256="1h69mc1wayi80vz4b9cqydylf4kp9mxsigv05r0f903pqakdrzcw"; depends=[diffrprojects dplyr hellno htmlwidgets jsonlite magrittr tidyr]; }; diffusionMap = derive2 { name="diffusionMap"; version="1.1-0"; sha256="1l985q2hfc8ss5afajik4p25dx628yikvhdimz5s0pql800q2yv3"; depends=[igraph Matrix scatterplot3d]; }; - digest = derive2 { name="digest"; version="0.6.9"; sha256="0ixy1mb7kfl20lkckqiilpw03g1ip4ibihs03gicz7w625hc7zcm"; depends=[]; }; + diffusr = derive2 { name="diffusr"; version="0.1.0"; sha256="14fzfr2i2qwbgc2rihqz4p8id6wrlvn0b5cvfrrvks6d62fk3zn2"; depends=[Rcpp RcppEigen]; }; + digest = derive2 { name="digest"; version="0.6.12"; sha256="1awy9phxdvqnadby7rvwy2hkbrj210bqf4xvi27asdq028zlcyd4"; depends=[]; }; digitalPCR = derive2 { name="digitalPCR"; version="1.1.0"; sha256="0hwqq84yr1hnvf4bygc5425887dhqjjjyy1ils71iavcal04s8pb"; depends=[]; }; + digitize = derive2 { name="digitize"; version="0.0.4"; sha256="1qw4x4z9vrs79sd9b2daw668nc6nvjl4qhayfqmd87yxa2ydv6x0"; depends=[readbitmap]; }; dils = derive2 { name="dils"; version="0.8.1"; sha256="1q6ba9j14hzf7xy895mzxc6n9yjgind55jf350iqscwzxf7ynp33"; depends=[igraph Rcpp]; }; + dimRed = derive2 { name="dimRed"; version="0.0.3"; sha256="0rmw55g0vmvpk26akxjqp7d4wlkfrjz1j28azmwc5vmhimffl3vx"; depends=[DRR]; }; dina = derive2 { name="dina"; version="1.0.1"; sha256="1wjnpmjwvji41afp5pqx28w36a8jmszlcw0d3b8j82j681a5h882"; depends=[Rcpp RcppArmadillo]; }; dinamic = derive2 { name="dinamic"; version="1.0"; sha256="0mx72q83bbwm10ayr3f1dzwr5wgz7gclw7rh39yyh95slg237nzr"; depends=[]; }; diptest = derive2 { name="diptest"; version="0.75-7"; sha256="0rcgycgp0bf8vhga1wwgfcz3pqs5l26hgzsgf2f97dwfna40i1p1"; depends=[]; }; - directPA = derive2 { name="directPA"; version="1.2"; sha256="0wzmlahqcrb5f3hrlym5gs5wizmgvhndky7zvc98324bq645b56m"; depends=[calibrate rgl]; }; + directPA = derive2 { name="directPA"; version="1.3"; sha256="0hcs56y69gdkfyk2xl0vxh01c19s6z1lfv02g056wxr24qfsx08c"; depends=[calibrate rgl]; }; directlabels = derive2 { name="directlabels"; version="2015.12.16"; sha256="0vi9zbc2sa8fpi2n2ax1ni9f8s9w1hc0f6gahk8fcrmnagj4g089"; depends=[quadprog]; }; dirmult = derive2 { name="dirmult"; version="0.1.3-4"; sha256="1r9bhw1z0c1cgfv7jc0pvdx3fpnwplkxwz8j8jjvw14zyx803rnz"; depends=[]; }; - discSurv = derive2 { name="discSurv"; version="1.1.2"; sha256="02jk2qz029i3rxikbfq66g9246gangmbzhq1cl8hxib0891j535b"; depends=[functional mgcv mvtnorm]; }; + discSurv = derive2 { name="discSurv"; version="1.1.5"; sha256="0lbzaalh1jack49px47sqsmpwmv14w4h1y2r9k294921d02zl0w5"; depends=[functional mgcv mvtnorm]; }; + discgolf = derive2 { name="discgolf"; version="0.1.0"; sha256="15bk2k7glahcbz4kyl3fiayi7ck6z3wabl9y25fg6cnxkbyh6dbn"; depends=[httr jsonlite xml2]; }; disclap = derive2 { name="disclap"; version="1.5"; sha256="0piv9gxhxcd4pbh5qjn9c3199f32y3qiw5vy8cr77ki70dnmr66n"; depends=[]; }; disclapmix = derive2 { name="disclapmix"; version="1.6.2"; sha256="01pn8hy3xbf1b1fbbsd4n2hv7gs97zalgq858xsrr4a0nqrvxmn5"; depends=[cluster disclap Rcpp]; }; discreteMTP = derive2 { name="discreteMTP"; version="0.1-2"; sha256="13qsf1kc3rph0kkdkz31qj072www5dwjyk73lfpy141rzhcn1v1x"; depends=[]; }; discreteRV = derive2 { name="discreteRV"; version="1.2.2"; sha256="1lhf67cccr96zl3j1sysh2bv0pbgvkbgjdzm35fvrdm7k74ypjsi"; depends=[MASS plyr]; }; + discretecdAlgorithm = derive2 { name="discretecdAlgorithm"; version="0.0.2"; sha256="1rdcwlp6m08fjvw54f4m07ahdx1vh1wdzxpai79kchgxp0i9np9g"; depends=[Rcpp RcppEigen sparsebnUtils]; }; discretization = derive2 { name="discretization"; version="1.0-1"; sha256="00vq2qsssnvgpx7ihbi9wcafpb29rgv01r06fwqf9nmv5hpwqbmp"; depends=[]; }; discrimARTs = derive2 { name="discrimARTs"; version="0.2"; sha256="088v4awic4bhzqcr7nvk2nldf8cm1jqshg2pzjd2l2p1cgwmlxib"; depends=[RUnit]; }; - diseasemapping = derive2 { name="diseasemapping"; version="1.4.0"; sha256="0hypk2y92x2q5jxm5qyjkzvqldz5037gclnxa6qx64bwylv2viam"; depends=[sp]; }; - dismo = derive2 { name="dismo"; version="1.0-15"; sha256="0ahm80dp839wfx04f9qkc4wwydidhqaiajba7jynqk60kw8hhl7g"; depends=[raster sp]; }; + diseasemapping = derive2 { name="diseasemapping"; version="1.4.2"; sha256="065ndvpx3q9ycxfjl1f2iy3s23d7qf27s1qz31ppx0n929jynn6n"; depends=[sp]; }; + diskImageR = derive2 { name="diskImageR"; version="1.0.0"; sha256="1r19k5fdjn6vkn11p5df77fnxfqaz3nciiaai0f3pr2bgpfppzka"; depends=[subplex zoo]; }; + dismo = derive2 { name="dismo"; version="1.1-4"; sha256="1j4pzbyvn8msi3k2y79nc6pqlrald46168ibznjwrr6rdiqhy4gj"; depends=[raster sp]; }; disp2D = derive2 { name="disp2D"; version="1.0"; sha256="0q5bds2r1mqzcwmnj61dmwqv6b0s0scq5h3nim47q3wp0n4gbslz"; depends=[geometry]; }; - disparityfilter = derive2 { name="disparityfilter"; version="2.1"; sha256="0ld43hd4dr389pd8sncslp707jyfgbx7w1larq75gkzjykc29aqw"; depends=[igraph]; }; + disparityfilter = derive2 { name="disparityfilter"; version="2.2.3"; sha256="0dkk3qws631mf0g02di5rsrvh5954cykysyri0g8aqgik0j9dg06"; depends=[igraph]; }; displayHTS = derive2 { name="displayHTS"; version="1.0"; sha256="0mqfdyvn2c5c3204ykyq29ydldsq0kb3a1d7mrzqr7cvrj1ahlqa"; depends=[]; }; dispmod = derive2 { name="dispmod"; version="1.1"; sha256="141gzhnmxxl495cpjgd4wnvdrbz6715m6sd1pycrbaqrsdc1pv57"; depends=[]; }; disposables = derive2 { name="disposables"; version="1.0.1"; sha256="1gmmf34hq8vm2gjg1560hkarppxmzakymgjbpzbpy2j471kd9s7a"; depends=[]; }; dissUtils = derive2 { name="dissUtils"; version="1.0"; sha256="00fzlmkdfw2s3k824wp2pk3v7cvxnywi1hfp86g4mm95z2qlw9br"; depends=[]; }; distance_sample_size = derive2 { name="distance.sample.size"; version="0.0"; sha256="0hlf3kp34rg1gnkxp4k3rnv0shv4fpgb0rhx3a6x5692lhyigbcs"; depends=[MASS]; }; distcomp = derive2 { name="distcomp"; version="0.25.4"; sha256="0drh7a79nvc6l6c0q2k9hva6kpb8ik6q2aiynp8ab8pf0dh84h6d"; depends=[digest httr jsonlite R6 shiny stringr survival]; }; + distdrawr = derive2 { name="distdrawr"; version="0.1.2"; sha256="1i1rkkic3kz2cs7fq4sb7zfr6s4wini8g1851yxzs9bjgqpsch1d"; depends=[]; }; distfree_cr = derive2 { name="distfree.cr"; version="1.0"; sha256="13y714l6b3kkpp75fdrsbdclgj1vw1xsvbj9pxi4lkwf11wwmrqr"; depends=[]; }; distillery = derive2 { name="distillery"; version="1.0-2"; sha256="12m4cacvc18fd3aayc8iih5q6bwsmvf29b55fwp7vs8wp1h8nd8c"; depends=[]; }; distory = derive2 { name="distory"; version="1.4.2"; sha256="12j19cb1b4prm8m43gya15kia1ii1k0yy7hkngpn2vsyk7n2z65m"; depends=[ape]; }; - distr = derive2 { name="distr"; version="2.5.3"; sha256="13ssdidbh4x534f0vvhfpi5cdrhlpmrz8s0y33q7ccf3dfmdsyan"; depends=[sfsmisc startupmsg SweaveListingUtils]; }; - distrDoc = derive2 { name="distrDoc"; version="2.5.1"; sha256="02wcqy9z36lxkpxy42vj1yv7x2v3i57rngpw58s7immzp5j3dlam"; depends=[distr distrEx distrMod distrSim distrTeach distrTEst MASS RandVar startupmsg SweaveListingUtils]; }; - distrEllipse = derive2 { name="distrEllipse"; version="2.5"; sha256="1slzzmcf09mqqba287rpgpwbsq6j5lprjgxda5lrc21znvrgfxn3"; depends=[distr distrEx distrSim mvtnorm setRNG]; }; - distrEx = derive2 { name="distrEx"; version="2.5"; sha256="0mbccd53r9wl875i702j14wlrv7pjgrwzlnyc511cqa5pg3mn81i"; depends=[distr]; }; - distrMod = derive2 { name="distrMod"; version="2.5.3"; sha256="1xa6a8fxhb87z4bimvnrylm63q9m90kmm49w2dik79a9d5x5q29b"; depends=[distr distrEx MASS RandVar sfsmisc startupmsg]; }; - distrRmetrics = derive2 { name="distrRmetrics"; version="2.5"; sha256="0c7fhckw7hav68gag8ymgicywl2vbnvqpjxca0x24wpdi1gs4jf6"; depends=[distr fBasics fGarch]; }; - distrSim = derive2 { name="distrSim"; version="2.5.2"; sha256="0ipg4l2vyifaj1r9a4cc8kg32s65jpz5wxrlnrix95xk5wasdpbh"; depends=[distr setRNG]; }; - distrTEst = derive2 { name="distrTEst"; version="2.5"; sha256="1swl4v70gkkpidddsgqf0dqz9j0xz5j1wk44bhpi4ficim7hap3l"; depends=[distrSim setRNG startupmsg]; }; - distrTeach = derive2 { name="distrTeach"; version="2.5"; sha256="0a7qfqpirzcd94dvcvmprhhj2j1yl3lpizsi8mdqr19zcp6dw21k"; depends=[distr distrEx]; }; + distr = derive2 { name="distr"; version="2.6"; sha256="0f2y3ycng2chbhas0bq8zqp314lsm8c39chxpg40dcfq0f1z3rmk"; depends=[MASS sfsmisc startupmsg SweaveListingUtils]; }; + distrDoc = derive2 { name="distrDoc"; version="2.6"; sha256="19yjns5cv2jp551kbld30xmdzljxr0lj5gps0lxfv8d7mrj09kf7"; depends=[distr distrEx distrMod distrSim distrTeach distrTEst MASS RandVar startupmsg SweaveListingUtils]; }; + distrEllipse = derive2 { name="distrEllipse"; version="2.6.2"; sha256="1rhpnwsml7vs2nkn4q4203fi0qwfc4pxgva0b4z30zzhywb0p3hg"; depends=[distr distrEx distrSim mvtnorm setRNG startupmsg]; }; + distrEx = derive2 { name="distrEx"; version="2.6"; sha256="10gx646xg2rysj9p3pf1a13fqibs84i2nlvxppf3vc5z74vjxk4a"; depends=[distr startupmsg]; }; + distrMod = derive2 { name="distrMod"; version="2.6.1"; sha256="1i7b08i8zjv2k4p2j1nlqbyjrcapf52k2my83i75hcrjqdy8r3sv"; depends=[distr distrEx MASS RandVar sfsmisc startupmsg]; }; + distrRmetrics = derive2 { name="distrRmetrics"; version="2.6"; sha256="077ryxl6l6fql81nsl7dm16pawsqd0l6ljfpkrnzjab4mljqaxgp"; depends=[distr fBasics fGarch startupmsg]; }; + distrSim = derive2 { name="distrSim"; version="2.6"; sha256="1kq85ivnw4mplpr2jmc2w19kvk0d1wffz6laypay2j5gyd8fm44x"; depends=[distr setRNG startupmsg]; }; + distrTEst = derive2 { name="distrTEst"; version="2.6"; sha256="1c0xwpyr5gs89psiflcz5dplsb1g9r651jiqg8nxcqa05r9kyhkr"; depends=[distrSim setRNG startupmsg]; }; + distrTeach = derive2 { name="distrTeach"; version="2.6.1"; sha256="0x60xlij1m9q7xhi9vnf61vb2px9aah8iqaki6d87c1pxylmqnvr"; depends=[distr distrEx startupmsg]; }; distrom = derive2 { name="distrom"; version="0.3-3"; sha256="1kpbrsa7ml72zvmdcpbbz2rsv4lpqd5i2w3v488ji6nbi44v1gp6"; depends=[gamlr Matrix]; }; divagis = derive2 { name="divagis"; version="1.0.0"; sha256="1kcz7i3h9xxpqhlq0rl08pgcwd16ygjjmm0jjv9knn2ggc3j1jzz"; depends=[rgdal sp]; }; diveMove = derive2 { name="diveMove"; version="1.4.1"; sha256="13vgnjifvjsrhh3ns5l2gxwf80bg3a3j3n9ycblzjyjpl7i1960i"; depends=[caTools geosphere KernSmooth quantreg]; }; diveRsity = derive2 { name="diveRsity"; version="1.9.89"; sha256="0f75dak14x9x9xs6ql9686n6w1f0w5g6h5ya983mg547f1zzbw9m"; depends=[ggplot2 qgraph Rcpp shiny]; }; - diverse = derive2 { name="diverse"; version="0.1.1"; sha256="1k4fxaizasv47cnlijm8dhdb5lagqrmhn6g0nk6mhca21n3qdjsd"; depends=[foreign proxy reshape2]; }; - diversitree = derive2 { name="diversitree"; version="0.9-8"; sha256="02cr8wrahm3kljj7gpmfwadjlca04a8gvm0i65436yj2lh4vxqa8"; depends=[ape deSolve Rcpp subplex]; }; + diverse = derive2 { name="diverse"; version="0.1.4"; sha256="0c5a2ippnygyny9bkqk8s9vywq5207nss0ikywgji8ld0zvxsmi6"; depends=[foreign proxy reshape2]; }; + diversitree = derive2 { name="diversitree"; version="0.9-9"; sha256="00dzw9fpcdgfvf7jl3lr2a2gpfd8pr17myih04v5hkxpjmsydawp"; depends=[ape deSolve Rcpp subplex]; }; + divest = derive2 { name="divest"; version="0.2.0"; sha256="0yhk83dmwkii1w355vqmcn4wsm3k8npm4v8wsf6knvqrszh6zh0s"; depends=[Rcpp RNifti]; }; divo = derive2 { name="divo"; version="0.1.2"; sha256="1g3wv89zjd5x0qic39jy81kl488gila3lwdjdilm9dxh4kb4dbw5"; depends=[cluster RcppCNPy]; }; dixon = derive2 { name="dixon"; version="0.0-5"; sha256="0x7x0l7p8kmkfqqqah8hck2r96b3w8padd41skd3q35vq8kmnsqc"; depends=[spatstat splancs]; }; dkDNA = derive2 { name="dkDNA"; version="0.1.1"; sha256="0ycyzn5bmhjl5idp0lndffkninpm9n23wrkrzi59ac8z8ghsnhf4"; depends=[]; }; + dlib = derive2 { name="dlib"; version="1.0"; sha256="0d6p28r86jq7gwqh3njnsfgl6mmgx7famqx7p1xmra91cdlp3hqj"; depends=[Rcpp]; }; dlm = derive2 { name="dlm"; version="1.1-4"; sha256="0hyphl90bqc16j7in750pmiyq28hmc46kxgv7gj17c8xl9c9xqxm"; depends=[]; }; dlmap = derive2 { name="dlmap"; version="1.13"; sha256="0s6wlkggkm3qndwyvw72xv1n0mcjb7ss3ajbq2ll6rv30splq0db"; depends=[ibdreg mgcv nlme qtl wgaim]; }; dlmodeler = derive2 { name="dlmodeler"; version="1.4-2"; sha256="06gqvk2wrzz4kpsh4vyrbqwmxirsvg78qj7clvcxdac0sfqn4gl7"; depends=[KFAS]; }; - dlnm = derive2 { name="dlnm"; version="2.2.3"; sha256="0b9gicyhdkx0pd0l883qr1sxmxi0qpwjk4allwp0dpr5y1nnrkzg"; depends=[mgcv nlme tsModel]; }; + dlnm = derive2 { name="dlnm"; version="2.3.2"; sha256="1gkpdy1mgnhiabfrfi41p3n8kzh2l480qrf3v50n8p3xcjamiagp"; depends=[mgcv nlme tsModel]; }; + dlsem = derive2 { name="dlsem"; version="1.7"; sha256="087yb5psc0yklpa5fpfazi1y5ngl8hmibfm9yfyvw652z6ykyvka"; depends=[graph gRbase nnet Rgraphviz]; }; + dlstats = derive2 { name="dlstats"; version="0.0.9"; sha256="0dgd4f8whk94whk9larvsp5axwijcdv5ib33akdysf25zf191mi2"; depends=[jsonlite magrittr]; }; dma = derive2 { name="dma"; version="1.2-3"; sha256="00nwx0835i4njlqxzizs9v29d3xkq2i7rdd24xzc9bzd0c4naq4d"; depends=[MASS mnormt]; }; dml = derive2 { name="dml"; version="1.1.0"; sha256="0z1dalgxh5nhrac49vh60d5awzjylc8b8mn5fk379c324milm59l"; depends=[lfda MASS]; }; - dmm = derive2 { name="dmm"; version="1.6-3"; sha256="15c5hvjjnr9c4sg34jx31abldjladls73rsszkqsdpd95li334xg"; depends=[MASS Matrix nadiv pls robustbase]; }; + dmm = derive2 { name="dmm"; version="1.7-1"; sha256="0ihzbv2vlymyr1l0xi0jmx0xgpbj46azd7gwr3m9qsgnjp7wc1p8"; depends=[MASS Matrix nadiv pls robustbase]; }; dmt = derive2 { name="dmt"; version="0.8.20"; sha256="0rwc8l9k2y46hslsb3y8a1g2yjxalcvp1l3v7jix0c5kz2q7917w"; depends=[MASS Matrix mvtnorm]; }; + dmutate = derive2 { name="dmutate"; version="0.1.1"; sha256="14lv16lqvlccf84s1g1qrz88y732qzb9545skg6fjrldcr8b0hl4"; depends=[dplyr]; }; dna = derive2 { name="dna"; version="1.1-1"; sha256="0gw70h1j67h401hdvd38d6jz71x1a6xlz6ziba6961zy6m3k5xbm"; depends=[]; }; - dnet = derive2 { name="dnet"; version="1.0.7"; sha256="0aa64y7mm1xan34h1pimajm7hvlm7z3r9rikysc2dw5dskkhli40"; depends=[Biobase graph igraph Matrix Rgraphviz supraHex]; }; - doBy = derive2 { name="doBy"; version="4.5-14"; sha256="01dhigi6qj0lmhas2d06ysm7ph71rfk5kj5sbivxi8a2dx8f73yl"; depends=[MASS Matrix survival]; }; + dnc = derive2 { name="dnc"; version="1.2"; sha256="0a0nc1yx6vhbjsik9pidda97i7s6ndlsm8pzx29ccmxlmqncc18b"; depends=[BayesLogit igraph MCMCpack movMF plot3D plot3Drgl Rcpp RcppArmadillo skmeans vegan]; }; + dnet = derive2 { name="dnet"; version="1.0.10"; sha256="011rqvwski3jh5nmn84pg3pxznbfm37gjz7sp7n6f3x3y807q2rg"; depends=[Biobase graph igraph Matrix Rgraphviz supraHex]; }; + doBy = derive2 { name="doBy"; version="4.5-15"; sha256="0n1ml47f78nqhy92a0fgsb4brz0qyfr4q3c7im8pnb0ngia4ssdx"; depends=[MASS Matrix]; }; + doFuture = derive2 { name="doFuture"; version="0.3.0"; sha256="1np7g4dqxkbfrilcbyrfdkppdv558xl9a4s4wgcxb2in6h27zzwp"; depends=[foreach future iterators]; }; doMC = derive2 { name="doMC"; version="1.3.4"; sha256="0y47jl6g4f83r14pj8bafdzq1phj7bxy5dwyz3k43d2rr8phk8bn"; depends=[foreach iterators]; }; doMPI = derive2 { name="doMPI"; version="0.2.1"; sha256="1d2pkxsap656l7h88q37ymy1jw0zd4n9h892511a1a230dxwc0xh"; depends=[foreach iterators Rmpi]; }; doParallel = derive2 { name="doParallel"; version="1.0.10"; sha256="1mddx25l25pw9d0csnx2q203dbg5hbrhkr1f08kw0p02a1lln0kh"; depends=[foreach iterators]; }; doRNG = derive2 { name="doRNG"; version="1.6"; sha256="0yvg4052gfdh54drn6xnpiqyd77p8765yi525nag3ismw2yn9y58"; depends=[foreach iterators pkgmaker rngtools]; }; doRedis = derive2 { name="doRedis"; version="1.1.1"; sha256="10ldfzq6m83b9w24az9bf5wbfm6y9gi233s8qgsk4dnr84n3nizx"; depends=[foreach iterators rredis]; }; doSNOW = derive2 { name="doSNOW"; version="1.0.14"; sha256="1xfk48i465sv2jqzydsaff3a656ggkrxzvhsqnrsgqh1k3423a1g"; depends=[foreach iterators snow]; }; - docopt = derive2 { name="docopt"; version="0.4.3.3"; sha256="1vpq5q3kfgwijrgblvfipxqkw0m75rahnlmddpiyfgziyszbmidm"; depends=[stringr]; }; - docopulae = derive2 { name="docopulae"; version="0.3.2"; sha256="1r5kva5z15nw1mdb3jma722ajj5mic9jrfj9x993nf8mz7lvsc19"; depends=[]; }; + docopt = derive2 { name="docopt"; version="0.4.5"; sha256="1pwng6018ls0hk785bs8yjwpzsqr2pcvzgpavqd9rw19n5lvzhxn"; depends=[stringr]; }; + docopulae = derive2 { name="docopulae"; version="0.3.3"; sha256="13889sj509gbl9zs7jqdvslp6sc81jv54cbqh1wpp834jp5s1q3x"; depends=[]; }; documair = derive2 { name="documair"; version="0.6-0"; sha256="1pphcbx90n9xn8a7gvfrwzfapwqgpbl3gg2grm7chfxgcp7i99i2"; depends=[]; }; - docxtractr = derive2 { name="docxtractr"; version="0.1.0.9000"; sha256="1g59xbg86qh871q8cphjp7jzd1g1dglx4h2n7f48m9vj1ha87h02"; depends=[dplyr xml2]; }; - domino = derive2 { name="domino"; version="0.2-7"; sha256="1wp2rikyggjvqpg29qjn3zcydyplmzhmbgq3xxrlq92swdyzmyy5"; depends=[]; }; - dosresmeta = derive2 { name="dosresmeta"; version="1.3.2"; sha256="1v0hf8x0qjzhxwa60ri2vhjv05z9iaf90dvhpmjjjrgskb7qpcd9"; depends=[aod Matrix mvmeta]; }; + docxtools = derive2 { name="docxtools"; version="0.1.0"; sha256="109fv2sg4dw6s10b4fx44npwvyr5yr69y7m701irqpc0bbwssh55"; depends=[dplyr ggplot2 pander stringr tibble tidyr]; }; + docxtractr = derive2 { name="docxtractr"; version="0.2.0"; sha256="197j57ab8x960b1yfq6xp8fwmq51xs04nf0cb16r161h4bcmgs2j"; depends=[dplyr purrr tibble xml2]; }; + domino = derive2 { name="domino"; version="0.3.0"; sha256="0lhrnrpyz98cl16a1xk7x0299kxkz303myyz61nw3x6f7kh1gvd6"; depends=[]; }; + dosresmeta = derive2 { name="dosresmeta"; version="1.3.3"; sha256="0j0718mlzwnnxc7rm9yqm9izsa7c2kbwfx9ai2ygj3xki9wr70jm"; depends=[aod Matrix mvmeta]; }; dostats = derive2 { name="dostats"; version="1.3.2"; sha256="15j9sik9j5pic5wrp0w26xkrhi337xkbikw0k7sa4yfimw6f84w5"; depends=[]; }; - dotenv = derive2 { name="dotenv"; version="1.0"; sha256="1lxwvrhqcwj9q24x30xzrw8qqhxgyr88ja3fajm5hf3pwbw85yls"; depends=[falsy magrittr]; }; - dotwhisker = derive2 { name="dotwhisker"; version="0.2.0.5"; sha256="1sigvyymyw7ayjg984zmwzsa45ywarjfczbxki8vj04sgkns0ss4"; depends=[broom dplyr ggplot2 gridExtra gtable plyr stringr]; }; + dotCall64 = derive2 { name="dotCall64"; version="0.9-04"; sha256="0qp6magpp0jaa0b9sfkbxd91afayl24kj0yrh0ix1v3ahdnaar8f"; depends=[]; }; + dotenv = derive2 { name="dotenv"; version="1.0.1"; sha256="1xvzsnb6v904829lqxmypn56jkm98lw4wpcvljn8620w2wipark5"; depends=[]; }; + dotwhisker = derive2 { name="dotwhisker"; version="0.2.3"; sha256="0q5l7vkypnh1rxlh5yd8jq4kql62wqf60gdpf7cds437w8fs8c01"; depends=[broom dplyr ggplot2 gridExtra gtable plyr stringr]; }; downloader = derive2 { name="downloader"; version="0.4"; sha256="1axggnsc27zzgr7snf41j3zd1vp3nfpmq4zj4d01axc709dyg40q"; depends=[digest]; }; - downscale = derive2 { name="downscale"; version="1.2-1"; sha256="10lri6k4w1jm2d8r2vj8qdjpdyr33al1vbd9s3s02lh48v8qgzif"; depends=[cubature minpack_lm raster Rmpfr sp]; }; + downscale = derive2 { name="downscale"; version="1.2-4"; sha256="080zlfz0yhznymr7icc2m7w5c0pqiak1qp22ywcfcb6d0mri3k8l"; depends=[cubature minpack_lm raster Rmpfr sp]; }; + downsize = derive2 { name="downsize"; version="0.2.1"; sha256="0cl143b6rn5l7q67vd9kjj5sdqq13s2fww722vqcq7ham20k2wsp"; depends=[dplyr R_utils]; }; dpa = derive2 { name="dpa"; version="1.0-3"; sha256="0dmwi68riddi1q4b10c12wx6n7pqfmv30ix5x72zpdbgm72v343h"; depends=[igraph sem]; }; - dpcR = derive2 { name="dpcR"; version="0.3"; sha256="1k9gz1j1b25lhzw7ism7klahs1q8xfyq1wagj90j3nps9agn9chd"; depends=[binom chipPCR dgof e1071 multcomp pracma qpcR rateratio_test readxl shiny signal spatstat]; }; + dpcR = derive2 { name="dpcR"; version="0.4"; sha256="02j7fhhfq7p2wfcnr7rdy65v6dcvdym3nfyps7717p7b429chchc"; depends=[binom chipPCR dgof e1071 evd multcomp pracma qpcR rateratio_test readxl shiny signal spatstat]; }; dpglasso = derive2 { name="dpglasso"; version="1.0"; sha256="1mx28xbm2z2bxyp33wv2v6vgn1yfsdsa0bzjjdxasgd6lvr51myf"; depends=[]; }; - dplR = derive2 { name="dplR"; version="1.6.4"; sha256="08h2l6af64g37fbaqx8y0phzca6x1ppvmk6mmqy73k03467jq6mk"; depends=[digest gmp lattice Matrix matrixStats png R_utils stringi stringr XML]; }; + dplR = derive2 { name="dplR"; version="1.6.5"; sha256="0npprzn8jz57192d4mblzx3hcibbas085mvhhy69cz5n2rdj78jr"; depends=[digest gmp lattice Matrix matrixStats plyr png R_utils stringi stringr XML]; }; dplRCon = derive2 { name="dplRCon"; version="1.0"; sha256="10xnawgnhxp5y949fxs1vvadc1qz2ldy0s9w9w7kf6iqh59d35sw"; depends=[]; }; - dplyr = derive2 { name="dplyr"; version="0.4.3"; sha256="1p8rbn4p4yrx2840dapwiahf9iqa8gnvd35nyc200wfhmrxlqdlc"; depends=[assertthat BH DBI lazyeval magrittr R6 Rcpp]; }; + dplyr = derive2 { name="dplyr"; version="0.5.0"; sha256="0ks5cklb03laqf5ygcw986g1lv7wk1ipvypjlha8xly2y4lvilwk"; depends=[assertthat BH DBI lazyeval magrittr R6 Rcpp tibble]; }; dpmixsim = derive2 { name="dpmixsim"; version="0.0-8"; sha256="0paa2hmpd6bqf0m7p9j7l2h3j18lm64ya6ya8zvp55wm8pf7xgqg"; depends=[cluster oro_nifti]; }; dpmr = derive2 { name="dpmr"; version="0.1.9"; sha256="1cnjywkvjb4fhbf4shjmsrq47f1fg2x21hcm1q5512bm0wg9i6jd"; depends=[digest httr jsonlite magrittr rio]; }; dprep = derive2 { name="dprep"; version="3.0.2"; sha256="0iw1pqpqlv436wpwh1w832aqvy91zvxmbk2jdw7aczrb29wys2bj"; depends=[class e1071 FNN MASS nnet rgl rpart StatMatch]; }; dr = derive2 { name="dr"; version="3.0.10"; sha256="0dmz4h7biwrn480i66f6jm3c6p4pjvfv24pw1aixvab2vcdkqlnf"; depends=[MASS]; }; drLumi = derive2 { name="drLumi"; version="0.1.2"; sha256="09ps8rcqrm6a1y8yif2x82l0k4jywq60pkndh9nzfpbsw4ak2lby"; depends=[chron gdata ggplot2 Hmisc irr minpack_lm msm plyr reshape rootSolve stringr]; }; - drat = derive2 { name="drat"; version="0.1.0"; sha256="0pcmgzgvkdlfh8nriqy2nvs3wqv3p072y9152g1k5xl71drbrdg6"; depends=[]; }; + drat = derive2 { name="drat"; version="0.1.2"; sha256="14nmbxy2y51bi258fmx24pkwmga791hnwzbx6jy2sl55g3vrxjpz"; depends=[]; }; drawExpression = derive2 { name="drawExpression"; version="1.0"; sha256="0c2daicqrjlqf7s788cknzvw9c6rm500lgmwfr7z03bq7bd2ah90"; depends=[]; }; - drc = derive2 { name="drc"; version="2.5-12"; sha256="1gw78n0w262wl6mdm5wvyp3f0hvrb2kj714acdxz84h2znxr9879"; depends=[car gtools MASS multcomp plotrix scales]; }; - drfit = derive2 { name="drfit"; version="0.6.4"; sha256="0n2dclq7y9npnhpx6nmidr4d6f3mn5z9ysjqp61yw1iwa4ymw3ks"; depends=[drc MASS]; }; - drgee = derive2 { name="drgee"; version="1.1.4"; sha256="1hfaaan7yxnznrwn5f866kp70r37gzml455vmplynrhx6ddd3rwy"; depends=[data_table nleqslv Rcpp RcppArmadillo survival]; }; + drc = derive2 { name="drc"; version="3.0-1"; sha256="0c8xn8ripzq270hy8d16fcnx02l02alddznd7fqwk3jyi6113h1y"; depends=[car gtools MASS multcomp plotrix scales]; }; + drfit = derive2 { name="drfit"; version="0.6.7"; sha256="0sh447qfx310wb19xcr1sbpap3jbi1nhmdzdrd5695zh2zcav2p7"; depends=[drc MASS]; }; + drgee = derive2 { name="drgee"; version="1.1.6"; sha256="01404mqvkvndn5gybq8dgkfc1cy9wk94p7k7i64h47w3zbkcwsax"; depends=[data_table nleqslv Rcpp RcppArmadillo survival]; }; drm = derive2 { name="drm"; version="0.5-8"; sha256="1p6ixd7hnv41gfmvan3rv9xzz1279hmrnvfrl6pxwzs9zcnbb53a"; depends=[]; }; drmdel = derive2 { name="drmdel"; version="1.3.1"; sha256="1bpm9jj9dxk2daxp1yb7pn9jd750p27qa84vdfxpacm5r0mggnys"; depends=[]; }; dropR = derive2 { name="dropR"; version="0.1"; sha256="0sw5lqlfdn64dbykxdhk1pz18f83if871vkapa2nxgcfiy79b0vs"; depends=[plyr shiny]; }; @@ -3860,98 +4761,129 @@ in with self; { ds = derive2 { name="ds"; version="3.0"; sha256="10xp575l0wh85wg32k3as02kgqm9ax9nx9i5kd5bkimfwg4qv745"; depends=[]; }; dsample = derive2 { name="dsample"; version="0.91.2.2"; sha256="18c0zxaqwgbn9kmkwlnicwd74ljy2sxj0b9ksif13pdlj3zn57h1"; depends=[MASS]; }; dse = derive2 { name="dse"; version="2015.12-1"; sha256="1976h57zallhzq43nshg77bsykcvkfwnasha1w59c44fjpl1gs9w"; depends=[setRNG tfplot tframe]; }; + dslabs = derive2 { name="dslabs"; version="0.0.1"; sha256="1v47w75h9m911smg25w0bmxzjfc3yyig2npp9sfyfx61h6jdh5a2"; depends=[]; }; dslice = derive2 { name="dslice"; version="1.1.5"; sha256="0qwz9rlgpgx0k28hca2m40ab0qad9rfp1gxswygchv7rcnl4f6ml"; depends=[ggplot2 Rcpp scales]; }; - dsm = derive2 { name="dsm"; version="2.2.9"; sha256="147c94bk73ss7bcliz4a65zx0lhf3gap9ygcc82yvf7sibpasnqd"; depends=[ggplot2 mgcv mrds nlme statmod]; }; + dsm = derive2 { name="dsm"; version="2.2.14"; sha256="1zcm4111qzl7mf160z7ax9gvvs627nig4zimxagzm2jdp004w10r"; depends=[ggplot2 mgcv mrds nlme numDeriv statmod]; }; + dsmodels = derive2 { name="dsmodels"; version="1.0.0"; sha256="094kif1ffbqlznsfig1rqkpgjd6r7dnlwwmjnlhwax05xvv3dl92"; depends=[shape]; }; dst = derive2 { name="dst"; version="0.3"; sha256="1gdf4sjk2svywx2m6z22d383xppsm6dm108w93pcwfs8fpcdwxb9"; depends=[]; }; - dti = derive2 { name="dti"; version="1.2-4.1"; sha256="0wn5hksv8szxslf1v5z2wnkscj3igl76swrapp1i6zlf5j9cjqp7"; depends=[adimpro awsMethods gsl oro_dicom oro_nifti quadprog rgl]; }; + dtables = derive2 { name="dtables"; version="0.2.0"; sha256="0ikgip3p4b7q97b2dshlx0fq09xsk304gfk5prw4rk95w9wck3qs"; depends=[psych]; }; + dti = derive2 { name="dti"; version="1.2-6.1"; sha256="1p88k7qkmas49niq618jhddc0h4mwh5gd267v6rlzzpmv5f98fkb"; depends=[adimpro awsMethods gsl oro_dicom oro_nifti quadprog rgl]; }; + dtplyr = derive2 { name="dtplyr"; version="0.0.1"; sha256="05p51dnvx2ldjkipbhi0ia3lq6l4xv55sqnqjhlnqc4p4hfc7wwf"; depends=[data_table dplyr lazyeval]; }; dtt = derive2 { name="dtt"; version="0.1-2"; sha256="0n8gj5iylfagdbaqirpykb01a9difsy4zl6qq55f0ghvazxqdvmn"; depends=[]; }; dtw = derive2 { name="dtw"; version="1.18-1"; sha256="1b91vahba09cqlb8b1ry4dlv4rbldb4s2p6w52gmyw31vxdv5nnr"; depends=[proxy]; }; - dtwSat = derive2 { name="dtwSat"; version="0.1.0"; sha256="1897ns6f8hg6s8k710yvx48f5m0zai0ifnsan6iva749c0nmrvv3"; depends=[dtw ggplot2 proxy reshape2 scales waveslim zoo]; }; - dtwclust = derive2 { name="dtwclust"; version="2.1.1"; sha256="160r5n02z5kswy6y9i62qmm3n390q7xrkbb7plshvksy1d024zn3"; depends=[caTools dtw flexclust foreach ggplot2 proxy reshape2 rngtools]; }; + dtwSat = derive2 { name="dtwSat"; version="0.2.1"; sha256="0w0hg0cp827mw98xlq8yqmx4cs4m7zlg6gbjlxk5pm8v2a3nhn3s"; depends=[caret dtw ggplot2 lubridate mgcv plyr proxy raster RColorBrewer reshape2 rgdal scales sp zoo]; }; + dtwclust = derive2 { name="dtwclust"; version="3.1.1"; sha256="0g3fffsvlwqb528y02fkazbll10yzcpblwxpc3519zff23vvb025"; depends=[caTools clue dtw flexclust foreach ggplot2 proxy Rcpp reshape2 rngtools]; }; dualScale = derive2 { name="dualScale"; version="0.9.1"; sha256="11hqxprai0s5id6wk4n2q174r1sqx9fzw3fscvqd2cgw8cjn1iwl"; depends=[ff lattice Matrix matrixcalc vcd]; }; dummies = derive2 { name="dummies"; version="1.5.6"; sha256="01f84crqx17xd6xy55qxlvsj3knm8lhw7jl26p2rh2w3y0nvqlbm"; depends=[]; }; dummy = derive2 { name="dummy"; version="0.1.3"; sha256="081a5h33gw6ym4isy91h6mcf247c2vsdygv9ll07a3mgjcjnk79p"; depends=[]; }; - dunn_test = derive2 { name="dunn.test"; version="1.3.2"; sha256="1w2hhv1fajxc4mxdzl4fnaxw7qz5lg9kr0jj1sdbjcfzs5v1sfl4"; depends=[]; }; + dunn_test = derive2 { name="dunn.test"; version="1.3.3"; sha256="1hkfv9p06gfv0j4fh299x0cm9rrvsbqv89kqddqf6fablxmqm7vh"; depends=[]; }; dupiR = derive2 { name="dupiR"; version="1.2"; sha256="0p649yw7iz6hnp7rqa2gk3dqkjbqx1f6fzpf1xh9088nbf3bhhz3"; depends=[plotrix]; }; dvfBm = derive2 { name="dvfBm"; version="1.0"; sha256="0gx11dxkbnh759ysd1lxdarlddgr3l5gwd5b0klwvwsgck6jv529"; depends=[wmtsa]; }; - dvn = derive2 { name="dvn"; version="0.3.3"; sha256="14ncna67qgknh20xdvxqddjhagj61niwpvz4ava9k0z68rgzmk5h"; depends=[RCurl XML]; }; - dygraphs = derive2 { name="dygraphs"; version="0.8"; sha256="0jqwa021h6cgzgjcg0qg1j9wvszna64vin8cn2cd0pla57xbrdxp"; depends=[htmlwidgets magrittr xts zoo]; }; - dyn = derive2 { name="dyn"; version="0.2-9"; sha256="16zd32567aj0gqv9chbcdgi6sj78pnnfy5k8si15v5pnfvkkwslp"; depends=[zoo]; }; - dynBiplotGUI = derive2 { name="dynBiplotGUI"; version="1.1.3"; sha256="1wgxxn0nlmza7npvjbkfq6nmp30n719yqrav6jzxcp00dk3ymg6g"; depends=[tcltk2 tkrplot]; }; + dvn = derive2 { name="dvn"; version="0.3.5"; sha256="04di2gpdacivvd9bi96w6145k280s8blavdhi1w3rw4c7sc3hag2"; depends=[RCurl XML]; }; + dygraphs = derive2 { name="dygraphs"; version="1.1.1.4"; sha256="0vwg9q7xrwxkm92d55ik9gdky42bj3jlh6fi4jzwyl5nfdswklb9"; depends=[htmltools htmlwidgets magrittr xts zoo]; }; + dyn = derive2 { name="dyn"; version="0.2-9.3"; sha256="00h75kqfpr77jhppnpxvykbdcmsmsb2vl2527xzq10wkvm7gfpvv"; depends=[zoo]; }; + dynBiplotGUI = derive2 { name="dynBiplotGUI"; version="1.1.5"; sha256="0fvyn33mzjcc3sis05phc6412y25m406il2wzdfw8caa8dafj0yw"; depends=[tcltk2 tkrplot]; }; dynCorr = derive2 { name="dynCorr"; version="0.1-2"; sha256="0qzhhfhkwpq6mwg7y6sxpqvcj8klvivnfv69g7x3ycha1kw2xk3w"; depends=[lpridge]; }; - dynRB = derive2 { name="dynRB"; version="0.6"; sha256="0kdbfhisw2ybqw1c7xcnlaqpsnj8vzh16iid69ajkvzxrm1qcwim"; depends=[caTools corrplot]; }; - dynaTree = derive2 { name="dynaTree"; version="1.2-7"; sha256="06pw78j6wwx7yc175bns1m2p5kg5400vg8x14v4hbrz3ydagx4dn"; depends=[]; }; + dynOmics = derive2 { name="dynOmics"; version="1.0"; sha256="10aw362hhwqdnjf7xxzy25fdxq2zznzvg6xwvl25a9ppj76nm1rh"; depends=[ggplot2 gplots snow]; }; + dynRB = derive2 { name="dynRB"; version="0.9"; sha256="0ysdlcchsszrgp2cizmli0l86ym2jz9addc21wxgdlz0vdfn7fn4"; depends=[caTools corrplot]; }; + dynaTree = derive2 { name="dynaTree"; version="1.2-9"; sha256="1a94mwllk116k9al18ckzy9p6yckvifp5hwrz2na4n2r10ivhn86"; depends=[]; }; dynamicGraph = derive2 { name="dynamicGraph"; version="0.2.2.6"; sha256="1xnsp8mr3is4yyn0pyrvqhl893gdx2y1zv8d2d55aah2xbfk0fjj"; depends=[ggm]; }; dynamicTreeCut = derive2 { name="dynamicTreeCut"; version="1.63-1"; sha256="1fadbql7g5r2vvlkr89nlrjxwp4yx4xrdqmv077qvmnx9vv0f4w3"; depends=[]; }; + dynamichazard = derive2 { name="dynamichazard"; version="0.2.0"; sha256="1ikl69c4hb1b4nv0zm6n3aaw928zihxzcbnwid29zdxl5ybg3bfd"; depends=[boot Rcpp RcppArmadillo stringr survival]; }; dynatopmodel = derive2 { name="dynatopmodel"; version="1.1"; sha256="100g131jmgb3by9j3v2n7f7jh9623vd7xf5frjkwrxvwzf0q1i3k"; depends=[deSolve lubridate maptools raster rgdal rgeos sp topmodel xts zoo]; }; + dynetNLAResistance = derive2 { name="dynetNLAResistance"; version="0.1.0"; sha256="018y3m648ni31rlisjfnrx1d10mm48wpxanlnnxxpnqxjcywg2x8"; depends=[doParallel foreach igraph]; }; dynia = derive2 { name="dynia"; version="0.2"; sha256="1swip4kqjln3wsa9xl0g92zklqafarva923nw7s44g4pjdy73d5l"; depends=[]; }; - dynlm = derive2 { name="dynlm"; version="0.3-3"; sha256="0ym23gv2vkvvnxvzk5kh6xy4gb5wbnpdbgkb5s6zx24lh81whvcs"; depends=[car lmtest zoo]; }; + dynlm = derive2 { name="dynlm"; version="0.3-5"; sha256="1sjhhlvvcgmayb9dfwacv1g75c4lhbpzyczj6h7gkd19bcfbdhqp"; depends=[car lmtest zoo]; }; + dynpanel = derive2 { name="dynpanel"; version="0.1.0"; sha256="073kfl5g4d7v8wd2qnpixqrxbac3cqj35z03ax2zlb8h2afa7j62"; depends=[gtools]; }; dynpred = derive2 { name="dynpred"; version="0.1.2"; sha256="111ykasaiznn3431msj4flfhmjvzq7dd1mnzn1wklc5ndix1pvf9"; depends=[survival]; }; + dynr = derive2 { name="dynr"; version="0.1.8-17"; sha256="1q2rag00haniv2ffp6k7kr00zy11rpksa55sp8wymcb96x8m64mw"; depends=[ggplot2 latex2exp MASS Matrix numDeriv plyr reshape2 xtable]; }; dynsim = derive2 { name="dynsim"; version="1.2.1"; sha256="0nkxn9v4f353fhcn1vsdrh29mrms10zid63b84flg3c6hvc0x4qr"; depends=[ggplot2 gridExtra MASS]; }; - dynsurv = derive2 { name="dynsurv"; version="0.2-2"; sha256="0418r7adki48pg3h7i1mgv3xpbryi520va3jpd03dx15zrq8zaqg"; depends=[BH ggplot2 nleqslv plyr reshape survival]; }; - e1071 = derive2 { name="e1071"; version="1.6-7"; sha256="1069qwj9gsjq6par2cgfah8nn5x2w38830761x1f7mqpmk0gnj3h"; depends=[class]; }; - eHOF = derive2 { name="eHOF"; version="1.7"; sha256="1xjn36qx12nplzvqxfcdl8brh0897abvvmsw6x7zsdsl4m88q0pa"; depends=[lattice mgcv]; }; - eRm = derive2 { name="eRm"; version="0.15-6"; sha256="0kdcdddyxp345bs5g9lipdy3s6c97bcrkgj4cd4c78s7gx4mk7ra"; depends=[lattice MASS Matrix]; }; - eVenn = derive2 { name="eVenn"; version="2.2.3"; sha256="0qliicql4yx9rih8f9ywhv40sqzgy21sdd8rg2ly0nwqlyii3537"; depends=[]; }; + dynsurv = derive2 { name="dynsurv"; version="0.3-5"; sha256="0rvwnssg876sng53viiqfcm7mxvilpds9yahj6bwgs90chnkjz4g"; depends=[BH ggplot2 nleqslv plyr reshape survival]; }; + e1071 = derive2 { name="e1071"; version="1.6-8"; sha256="08n6i26nfckjpxjkzi8phhanc3ahsrirkv5rz38y2jcv7ds031pn"; depends=[class]; }; + eAnalytics = derive2 { name="eAnalytics"; version="0.1.3"; sha256="1lrkmfs2sq9p2n7g528jf6wxixqk08w468nckkij2mprhrccjjj6"; depends=[dplyr DT energyr googleVis leaflet plotly shiny shinydashboard]; }; + eDMA = derive2 { name="eDMA"; version="1.4-0"; sha256="1nkbl6yywffb8q0x6ajymh1hpmkq038dc3a7xvw9szcjfrfbhw9v"; depends=[Rcpp RcppArmadillo xts zoo]; }; + eHOF = derive2 { name="eHOF"; version="1.8"; sha256="0g0sb98mlgvhs27s0a1x0ysj3r4p3r7i382fqzfv29kn1ayw0r5c"; depends=[lattice mgcv]; }; + eMLEloglin = derive2 { name="eMLEloglin"; version="1.0.1"; sha256="087zw48lykls2jcsmpqd5jkrlpr0j423snp00liszjhdpdh59saq"; depends=[lpSolveAPI]; }; + eRm = derive2 { name="eRm"; version="0.15-7"; sha256="0x8cqcwgn8znd9w9vkxcacf097rziyb511wzcfmhhadidiilk0x3"; depends=[lattice MASS Matrix]; }; + eVenn = derive2 { name="eVenn"; version="2.3.4"; sha256="1nwbqk2hqdi7y4ys3h6nrjv1pjzyx96w7643l8nbcdg5i4bbvvls"; depends=[]; }; eaf = derive2 { name="eaf"; version="1.07"; sha256="0310lrqfm1l0lifak7wa6xn21bzzn27kbrrx0bidj4hibwv7sa4l"; depends=[modeltools]; }; earlywarnings = derive2 { name="earlywarnings"; version="1.0.59"; sha256="06j5g5lrzl4p5pb1pp79h00iqpbwralzhpzxmaiymv7j8kz87nr0"; depends=[fields ggplot2 Kendall KernSmooth lmtest moments nortest quadprog som spam tgp tseries]; }; - earth = derive2 { name="earth"; version="4.4.4"; sha256="1i8lbn8brza7ggrrd8fkj24kj99lra47xbibv723hk0yxh4fgdpx"; depends=[plotmo TeachingDemos]; }; - easyPubMed = derive2 { name="easyPubMed"; version="1.5"; sha256="0s0c2iqqpiffch5pi2kkkrxymrhgys2iydpzci30x77knqx3cjba"; depends=[XML]; }; - easyVerification = derive2 { name="easyVerification"; version="0.2.0"; sha256="1az91skkkkg82sv287lkfmrhlwkrb235cghmrwgij1szx1askcvx"; depends=[pbapply Rcpp RCurl SpecsVerification]; }; + earth = derive2 { name="earth"; version="4.4.9"; sha256="1dyz2ac754scg474x9ksrwrqflmh9wi7qwgm494fpfi9ndd9ycig"; depends=[plotmo TeachingDemos]; }; + earthtones = derive2 { name="earthtones"; version="0.1.0"; sha256="1phl50bgd40i36fdkfs9xkqm703vgwxlnpyik6lk8ssip0m4rn9j"; depends=[ggmap]; }; + easyDes = derive2 { name="easyDes"; version="1.0"; sha256="17wjsvy9hnrp6s50ivrvahd6p147ibcn3wrlj1hx95qckqjk2b06"; depends=[multcomp PMCMR]; }; + easyPubMed = derive2 { name="easyPubMed"; version="1.7"; sha256="1gkd95ady6wqm3v89rf5k3axz3g4gv67bvr2kgci3zf3xvqzva7a"; depends=[XML]; }; + easySdcTable = derive2 { name="easySdcTable"; version="0.2.1"; sha256="0a7779xvsqzcsva9jxa10wz8bdbfp49r0w7c2dqwi9md04bv1qg1"; depends=[sdcTable SSBtools]; }; + easyVerification = derive2 { name="easyVerification"; version="0.4.0"; sha256="0jllrrp0abqkij7iq4z5paca4lgxh4lbrj5ifhrakrxdpncrg9wd"; depends=[pbapply Rcpp SpecsVerification]; }; easyanova = derive2 { name="easyanova"; version="4.0"; sha256="1d8fkgyqzphipvla7x8ipcf0by07iqx8xran15d2q82yq9iik5g9"; depends=[car nlme]; }; + easyformatr = derive2 { name="easyformatr"; version="0.1.2"; sha256="0mrpd21hyafn82apclxmhs2jbd87sdw0g6lwc3h6gl5cbm213nxb"; depends=[dplyr knitr lazyeval magrittr stringi tibble tidyr]; }; easynls = derive2 { name="easynls"; version="4.0"; sha256="1j2crqvgsf84bpwzf4qh5xkzn5mhxhfx9c0y3p8dbyn8bg7zc2rf"; depends=[]; }; easypackages = derive2 { name="easypackages"; version="0.1.0"; sha256="00paxdwz4bw3imqhcsw6hj1h0gmnpishlxcj79n826vhdy23jc4y"; depends=[assertthat devtools]; }; easypower = derive2 { name="easypower"; version="1.0.1"; sha256="1vf0zv55yf96wjxja6ifdjvgc9nw0jl0hnc1ygyjd8pmwbgdz9bl"; depends=[pwr]; }; - ebGenotyping = derive2 { name="ebGenotyping"; version="1.0"; sha256="07dpvxl9xspkzvzkywclg8whgcw7vyakls38pshfypjpyd6iv8ga"; depends=[]; }; + easyreg = derive2 { name="easyreg"; version="1.0"; sha256="01wpqr2vfa245xln1zmqr1a9bibj0cnx60bw24l1q1li7r13wjyy"; depends=[car nlme]; }; + ebGenotyping = derive2 { name="ebGenotyping"; version="2.0.1"; sha256="1jllzc7kvvckrws8qhgvwy626llyb68sp1davp7swx48sf7rwcxc"; depends=[]; }; ebSNP = derive2 { name="ebSNP"; version="1.0"; sha256="0x3ijwg4yycsfy6jch1zvakzfvdgpiq8i7sqdp5assb8z1823w0b"; depends=[]; }; - eba = derive2 { name="eba"; version="1.7-1"; sha256="0kxdhl7bc4f570m9rbxxzg748zvq0q7a0slvfr4w1f45vfzhyh17"; depends=[nlme]; }; + eba = derive2 { name="eba"; version="1.7-2"; sha256="00hlmnknif9yr4wzw0n1fzkrgbciv7ljc0gkfq34v3vvy3dmdsvq"; depends=[nlme]; }; ebal = derive2 { name="ebal"; version="0.1-6"; sha256="1cpinmbrgxxv0fzi9qi2inv4hw2lz7iq4b0ggp316rdqqb5bj9r0"; depends=[]; }; - ebdbNet = derive2 { name="ebdbNet"; version="1.2.3"; sha256="123iqp8rnm3pac5fvpzq5sqbf8nyfpf05g23nawanid6yv23ba9a"; depends=[igraph]; }; + ebdbNet = derive2 { name="ebdbNet"; version="1.2.5"; sha256="0kal4sqx12y04696ilwnwkmss4rn16dkbnalgqimz6i4jhz8n23h"; depends=[igraph]; }; + ebimetagenomics = derive2 { name="ebimetagenomics"; version="0.2"; sha256="1jbb1h2wp3fpmjivy09165qn72ign2pbss4bw9xcn2dlxaddgh1c"; depends=[sads]; }; ecb = derive2 { name="ecb"; version="0.2"; sha256="17hj4d48j6rran64ajzlgkgz17mab51fa3lz8rm3mw0qhahkjlmc"; depends=[curl httr rsdmx xml2]; }; - ecd = derive2 { name="ecd"; version="0.6.4"; sha256="16jlgwyb6rmxsas6p1dgxpmfdinm422v4y1f62kh7ai0sjcf8hjm"; depends=[moments optimx polynom Rmpfr RSQLite xts yaml zoo]; }; + ecd = derive2 { name="ecd"; version="0.8.3"; sha256="0ksr5yixg4psgx4nf3y061k2fj5843f6f3xwbfl0nyfly8595s1x"; depends=[digest gsl moments optimx polynom Rmpfr RSQLite xts yaml zoo]; }; + ecdfHT = derive2 { name="ecdfHT"; version="0.1.1"; sha256="1n3n9n86pj8c54l3xvp7knvi0ajbnjmz9pi79p7wfq92a90fqx48"; depends=[rgl]; }; ecespa = derive2 { name="ecespa"; version="1.1-8"; sha256="0rdjr0ss7a1n66dmvykbs3x944r88l08md2rfkg9w7bxm361ib8p"; depends=[spatstat splancs]; }; + echogram = derive2 { name="echogram"; version="0.1.0"; sha256="0v0fiy2fflk7pxn8wqr75wym0m6snggvvgxpa2b35alpmqch9k18"; depends=[geosphere readHAC]; }; ecipex = derive2 { name="ecipex"; version="1.0"; sha256="0pzmrpnis52hvy80p3k60mg9xldq6fx8g9n3nnqi3z56wxmqpdv7"; depends=[CHNOSZ]; }; + eclust = derive2 { name="eclust"; version="0.1.0"; sha256="01x327w02m357lngmgv3drni2s67sass25xk9vni1z434n8i4428"; depends=[caret data_table dynamicTreeCut magrittr pacman pander stringr WGCNA]; }; + ecm = derive2 { name="ecm"; version="0.6.0"; sha256="0swkaimm1nfrnb5niiihwx5i0b5l4cg8b6bmy0aipawpgpphn1yh"; depends=[car]; }; eco = derive2 { name="eco"; version="3.1-7"; sha256="0qrl1mq0nc42j4dzqhayzzb56gmkk479wgpxikzgzpj9wv78yd5s"; depends=[MASS]; }; ecodist = derive2 { name="ecodist"; version="1.2.9"; sha256="199f3lwwm8r2bnik595m540la1p4z6vbkwfqh9kimy9d0fjp8nps"; depends=[]; }; - ecoengine = derive2 { name="ecoengine"; version="1.9.1"; sha256="0y1f8ylyk9jny48z5grf4r9jcdin6clhy0vg1wkg3alsqn4iiqlg"; depends=[assertthat dplyr httr jsonlite leafletR lubridate plyr whisker]; }; + ecoengine = derive2 { name="ecoengine"; version="1.10.0"; sha256="0k24m03qpqbcdwsf6xawrh0x43b97w2pba3h4pcwl7j2p0ls91pi"; depends=[assertthat data_table dplyr httr jsonlite lubridate magrittr plyr whisker]; }; ecolMod = derive2 { name="ecolMod"; version="1.2.6"; sha256="1n30faldfhpm2jkaw793vr220kgn3bmn8hxhw32rax294krmwn4v"; depends=[deSolve diagram rootSolve shape]; }; ecoreg = derive2 { name="ecoreg"; version="0.2.1"; sha256="1v3n5nbabw6qmwcq3sx759k6c8q4pxbffl227rv0lnnfbq77zlmc"; depends=[]; }; ecoretriever = derive2 { name="ecoretriever"; version="0.2.1"; sha256="0jg4rmxfa9k0smlkrhiqdrjk3vhhmv6w634nh9y3mrdwnq4sk466"; depends=[]; }; - ecosim = derive2 { name="ecosim"; version="1.2"; sha256="1lzjd6kl2864ngyiqyfnnra5ag9bj42pxb793gwp45r7z95k32rf"; depends=[deSolve stoichcalc]; }; - ecospace = derive2 { name="ecospace"; version="1.0.0"; sha256="18v7hclrn9s9fi1s9v6zzras2ka7gnma214w0qdmxrgkygn9a926"; depends=[FD]; }; - ecospat = derive2 { name="ecospat"; version="1.1"; sha256="070vvx00gm36rwjz2g188jn7bkljs1c7j6ap6ssrl3ihzqvc1zdz"; depends=[ade4 adehabitatHR adehabitatMA ape biomod2 dismo ecodist gam gbm maptools randomForest raster rms sp spatstat]; }; + ecoseries = derive2 { name="ecoseries"; version="0.1.1"; sha256="165vc00nhlff91dry51q9agm01b9ikqs1zgwfc7xw1rq59cqbz47"; depends=[magrittr RCurl readr rjson rvest tibble xml2]; }; + ecosim = derive2 { name="ecosim"; version="1.3"; sha256="00arz8j2az1nn4p96pshw0p9xxq2qfgkyrf4ahvl1hp1h3k68jfn"; depends=[deSolve stoichcalc]; }; + ecospace = derive2 { name="ecospace"; version="1.1.3"; sha256="01nxjbx638s8pk1ybsz9zbk35cg27x35fam419b9rjj9kspxz49s"; depends=[FD]; }; + ecospat = derive2 { name="ecospat"; version="2.1.1"; sha256="1b0bmqvspg2qxnr07lj2qlwp2i90q1bjym9rjc8jdzqbmaz9gxyr"; depends=[ade4 adehabitatHR adehabitatMA ape biomod2 classInt dismo doParallel ecodist foreach gbm gtools iterators maptools MigClim PresenceAbsence randomForest raster rms sp spatstat vegan]; }; ecotoxicology = derive2 { name="ecotoxicology"; version="1.0.1"; sha256="084xkr59d7x9zxmsnsyym2x8jshz6ag6rvnmhd1i6fzar8ypwccb"; depends=[]; }; - ecoval = derive2 { name="ecoval"; version="1.0"; sha256="1szvr2ipb7bd0cyslhwwwyx5kw7yx3kpqcyzxfd9pk263bny323g"; depends=[rivernet utility]; }; - ecp = derive2 { name="ecp"; version="2.0.0"; sha256="0cr3rzvd4bahg5idd857mgp005n075xql5kvjw0smsjbjh4p84wq"; depends=[Rcpp]; }; + ecoval = derive2 { name="ecoval"; version="1.1"; sha256="0ihig6nq3lrz6lzix92lrlzywnqkzsp5lrbccn5slhxdj5llird2"; depends=[rivernet utility]; }; + ecp = derive2 { name="ecp"; version="3.0.0"; sha256="0v07ak7fbiph058rlbhmgx0f230mnpi39ib8vx9bdzhx5g5lrp0j"; depends=[Rcpp]; }; + ecr = derive2 { name="ecr"; version="1.0.1"; sha256="0vyv0ik8a9wa5cv2yd66935hn1i390lm6l6g0hnaycz07rfh8rlg"; depends=[BBmisc checkmate ggplot2 gridExtra parallelMap ParamHelpers reshape2 smoof]; }; + edarf = derive2 { name="edarf"; version="1.1.0"; sha256="04gcki36xnaflg1szsdsdvdw5icsny6iaqmqyxmb2im1b1a0r39w"; depends=[data_table ggplot2 mmpf]; }; edcc = derive2 { name="edcc"; version="1.0-0"; sha256="036fi6mnn9480hkb378xb5jilkfvdydjmkyw4mcc9s1lz195f62w"; depends=[spc]; }; + edci = derive2 { name="edci"; version="1.1-2"; sha256="10rqkimvmyb7hxp4wkpj8bq07q3yaimm058d4mmr09fw25lqyz1q"; depends=[]; }; edeR = derive2 { name="edeR"; version="1.0.0"; sha256="1dg0aqm5c4zyf015hz1hhn3m4lfvybc4gc1s7sp8jcsk46rxz0cc"; depends=[rJava rjson rJython]; }; - edeaR = derive2 { name="edeaR"; version="0.3.2"; sha256="1z4df1i3fk40n6jzzwdldb00k6zbsf3k64np3b35k0fk1ij04cvq"; depends=[dplyr ggplot2 lubridate tidyr XML]; }; + edeaR = derive2 { name="edeaR"; version="0.4.7"; sha256="1fgngqd9qi798v435cax3kvwczq536jac6fhj5nsjbach1jlmm2y"; depends=[data_table dplyr ggplot2 lubridate magrittr tidyr XML xml2]; }; edesign = derive2 { name="edesign"; version="1.0-13"; sha256="0fc3arr8x9x9kshp6jq4m4izzc5hqyn5vl0ys6x0ph92fc6mybp3"; depends=[]; }; - edfReader = derive2 { name="edfReader"; version="1.0.0"; sha256="0c2yhhfh779x5laicx11dgrxrr65wf85n29va9q55g8agrq5bfa4"; depends=[]; }; - edgar = derive2 { name="edgar"; version="1.0.4"; sha256="1rj6dfyg76c0p5im1qag4xpv4v98r5slkhvyxy9r1ibnyga22ica"; depends=[ggplot2 R_utils rChoiceDialogs RColorBrewer shiny shinydashboard tm wordcloud XML]; }; + edf = derive2 { name="edf"; version="1.0.0"; sha256="14ikm6j0ndxrk7c7lh5mbd2aci46d4j9a30mvcgnxy3kq6046a7b"; depends=[]; }; + edfReader = derive2 { name="edfReader"; version="1.1.1"; sha256="1si123kn66z2h8rrp5ck6hbjp11q0p3ja2h7xim4sqglbwca3fjw"; depends=[]; }; + edfun = derive2 { name="edfun"; version="0.2.0"; sha256="1wxx6bgy03z7c1d6556bbjl1cb49n2vn734fw2d5c1jk0zsh3fmz"; depends=[]; }; + edgar = derive2 { name="edgar"; version="1.0.8"; sha256="1sy4v3nw66z96mbgqfx2bkk085virilyrx03sqjp8p37v08x9yg1"; depends=[ggplot2 R_utils RColorBrewer tm wordcloud XML]; }; edgeCorr = derive2 { name="edgeCorr"; version="1.0"; sha256="19n67yc58ksin7xydrnfsyyw7fqawm5xli67cz4lv4wb62w6r6ld"; depends=[]; }; edgeRun = derive2 { name="edgeRun"; version="1.0.9"; sha256="0d5nc8fwlm61dbi00dwszj1zqlij4gfds3w1mpcqnnfilr2g3di1"; depends=[data_table edgeR]; }; edgebundleR = derive2 { name="edgebundleR"; version="0.1.4"; sha256="0pajr95qqppk2m4l7rfi46rll32z8a7lmq0vmb3p8n0aks5ajn1n"; depends=[htmlwidgets igraph rjson shiny]; }; editrules = derive2 { name="editrules"; version="2.9.0"; sha256="14mfa8flkym2rx9n7bq9icc9fsrk3szib3amx5l0008rxll9qnxm"; depends=[igraph lpSolveAPI]; }; - edmr = derive2 { name="edmr"; version="0.6.3.1"; sha256="1avb4gnw8s635yyn3sh20pmppsnz39s7r1pr8ggdc61ca1mkh2mk"; depends=[data_table GenomicRanges IRanges mixtools S4Vectors]; }; edrGraphicalTools = derive2 { name="edrGraphicalTools"; version="2.1"; sha256="09y63xj3gqrz66mym20g4pmfwrb0wnc2n67692hnqq8dz31q7p3i"; depends=[lasso2 MASS mvtnorm rgl]; }; - eegAnalysis = derive2 { name="eegAnalysis"; version="0.0"; sha256="1lrwjbhm5fnf5fhyyga2b21j2snnmj3zfvfxfkvgsbdnzr3qxaxb"; depends=[e1071 fields splus2R wmtsa]; }; + edstan = derive2 { name="edstan"; version="1.0.6"; sha256="1gm1rxwywigyfdlcm2yj1m9qjb4s6w7chr1ck7b32x1pdxdl3ns5"; depends=[ggplot2 rstan]; }; + educineq = derive2 { name="educineq"; version="0.1.0"; sha256="0qd6kvcy280glv3q6lcrawmnsfvp90as95chgi3hav0yj2dpakn6"; depends=[flexsurv ineq]; }; + eechidna = derive2 { name="eechidna"; version="0.1"; sha256="17z3nay7dcys5hwfmm7wgsidz6pim97xlw8hlyh5bns57s10nwx7"; depends=[dplyr ggplot2 ggthemes plotly shiny shinyjs tidyr]; }; + eefAnalytics = derive2 { name="eefAnalytics"; version="1.0.6"; sha256="07wpz8zlgkbzkhmv569w7rnz3i830391arrh17sg2gc4fx9h1559"; depends=[geoR lme4 metafor mvtnorm]; }; eegkit = derive2 { name="eegkit"; version="1.0-2"; sha256="10dksmc5lrl0ypifvmmv96xnndl2zx191sl79qif0gfs3wq3w4s0"; depends=[bigsplines eegkitdata ica rgl]; }; eegkitdata = derive2 { name="eegkitdata"; version="1.0"; sha256="1krsadhamv1m8im8sa1yfl7injvrc4vv3p88ps1mpn8hibk5g51m"; depends=[]; }; eel = derive2 { name="eel"; version="1.1"; sha256="0cv6dhw57yy140g73z94g9x1s42fpyfliv9cm2z1alm7xwap1l0x"; depends=[emplik rootSolve]; }; - eemR = derive2 { name="eemR"; version="0.1.2"; sha256="1mcvn5hjqwr8hgp3rdyxr7lh7x35rjza530grd3ys9vfnsn4k44q"; depends=[dplyr fields ggplot2 pracma R_matlab readr stringr tidyr]; }; - eeptools = derive2 { name="eeptools"; version="0.9.1"; sha256="0rgal6a5jjl572dqzc4zwmcqjsa12x8mv99c63bfmczp11f5hjmn"; depends=[arm data_table ggplot2 maptools memisc vcd]; }; - effects = derive2 { name="effects"; version="3.0-7"; sha256="055ws22k10vkcrbqvchdjnpmnklnk77wqx3rn7lyyry38bfn6xwn"; depends=[colorspace lattice lme4 nnet]; }; + eemR = derive2 { name="eemR"; version="0.1.4"; sha256="15b612z3h4alqv34wz28mgkg9m31r872pxbxayzqinf0pam8x08y"; depends=[dplyr fields pracma R_matlab readr rlist stringr viridis]; }; + eeptools = derive2 { name="eeptools"; version="1.0.0"; sha256="009ygzdqlvff4gichigy38878x60iqs4gr31ddrgildbrpq38hrd"; depends=[arm data_table ggplot2 maptools memisc vcd]; }; + effectFusion = derive2 { name="effectFusion"; version="1.0"; sha256="1nx61n4lgnj6wh4arqm62p9xwxqvz4g7bs4b5k3ybkhmh6ns9v5l"; depends=[bayesm cluster ggplot2 MASS Matrix]; }; + effects = derive2 { name="effects"; version="3.1-2"; sha256="1fwkz6z3rya4qn476w9vni15rfvjp2ix87qk0naszn3n1k8bf0l0"; depends=[colorspace lattice lme4 nnet]; }; efflog = derive2 { name="efflog"; version="1.0"; sha256="1sfmq7xrr6psa6hwi05m44prjcpixnrl7la03k33n0bksj8r1w6b"; depends=[]; }; - effsize = derive2 { name="effsize"; version="0.6.1"; sha256="1b26ngy5n1yh2ry3vwkz3x497xw5wxbv7iywlk5j368rlb97sjbj"; depends=[]; }; + effsize = derive2 { name="effsize"; version="0.7.0"; sha256="113afdf1w1q75alc4i5i8l3ljsdsfn22l8cszljrpgp420csbzhv"; depends=[]; }; efreadr = derive2 { name="efreadr"; version="0.1.1"; sha256="1fkifml8g7hgg3qb19b9ljljzx9sbbpnb9xa18mvkxgmbw41qsy7"; depends=[dplyr ensurer magrittr readr]; }; ega = derive2 { name="ega"; version="1.0.1"; sha256="02mbadv505jz6nk1yp9xl12c9l9wnwpl5bajfbhgs837pdca438g"; depends=[ggplot2]; }; egcm = derive2 { name="egcm"; version="1.0.8"; sha256="1mrbm0yzqw344fzgcbwc6bgdn8fv8id80jnfp3jaqjfslfhlpzx7"; depends=[fArma ggplot2 MASS tseries TTR urca xts zoo]; }; - eggCounts = derive2 { name="eggCounts"; version="0.4-1"; sha256="16prkcmpfjl1lab8m9hm0sfbdlh94ds3wi6ra9n2wnrpdn32fl20"; depends=[actuar boot coda]; }; + eggCounts = derive2 { name="eggCounts"; version="1.3"; sha256="1yak67k1c13rx6ghm78585k2rdsgg9ajr3zaihjk8widavb3m23g"; depends=[BH boot coda numbers Rcpp RcppEigen rstan StanHeaders testthat]; }; egonet = derive2 { name="egonet"; version="1.2"; sha256="1f0fbqyk2ilmhirxvf1iwgfappi5r7807ag77r89lbaf5jq8akl0"; depends=[sna]; }; - eha = derive2 { name="eha"; version="2.4-3"; sha256="1dfilgw9m4m78ny3fd89nl8f9c9y5z5bnj912hpbfff3v5yfm3iq"; depends=[survival]; }; - ei = derive2 { name="ei"; version="1.3"; sha256="1vx34mwh0hf9nbkzw4kw35z88bdp4mbgnylj6vcy4jql1q8i4yxf"; depends=[cubature eiPack ellipse foreach MASS mnormt msm mvtnorm plotrix rgl sp tmvtnorm ucminf]; }; - eiCompare = derive2 { name="eiCompare"; version="1.6"; sha256="0fn4mgjhlc8ys7xjwmv2awwwbr963p0d685rfpmvxbszzbfkb06s"; depends=[cubature data_table eiPack ellipse foreach mnormt msm mvtnorm plotrix plyr R_utils tmvtnorm ucminf]; }; + eha = derive2 { name="eha"; version="2.4-4"; sha256="1sp1v3jmidj4ynjq7q7y28j9f483yhbzaz1jnxjc4hqk8398cxii"; depends=[survival]; }; + ei = derive2 { name="ei"; version="1.3-3"; sha256="0i8pvpal23zwsqldhmm3iis4vw9s08mlydpshaig2dsd9549gn11"; depends=[cubature eiPack ellipse foreach MASS mnormt msm mvtnorm plotrix sp tmvtnorm ucminf]; }; + eiCompare = derive2 { name="eiCompare"; version="1.7"; sha256="128wvfsvzf84rkvk3bnailn2k4qf5iq5r7hnrxlamajia526ky31"; depends=[cubature data_table eiPack ellipse foreach ggplot2 magrittr mnormt msm mvtnorm plotrix plyr R_utils tidyr tmvtnorm ucminf]; }; eiPack = derive2 { name="eiPack"; version="0.1-7"; sha256="1cxk31bj012ijm85sf6l4rjrwayw94j2d6aav8p9g1f0raha2s6y"; depends=[coda MASS msm]; }; eigeninv = derive2 { name="eigeninv"; version="2011.8-1"; sha256="18dh29js824d7mrvmq3a33gl05fyldzvgi8mmmr477573iy9r30g"; depends=[]; }; eigenmodel = derive2 { name="eigenmodel"; version="1.01"; sha256="0p9n28x5gg46nszzd2z9ky5fhv6qa070673i1df6bhjh962aqgaf"; depends=[]; }; @@ -3959,142 +4891,198 @@ in with self; { eive = derive2 { name="eive"; version="2.1"; sha256="1vazl5dnrvljd07csy9rjs4302w09h94i411gffg9fvxn70km7qg"; depends=[Rcpp]; }; eiwild = derive2 { name="eiwild"; version="0.6.7"; sha256="1fp4kvlmcjjnzn2a5cmlzaf6y5q6cdbbi2nmvjyqc4y1bmwh3srf"; depends=[coda gtools lattice]; }; elasso = derive2 { name="elasso"; version="1.1"; sha256="0nz3vw803dvk4s45zc9swyrkjwna94z84dn4vfj3j17h74a0cij2"; depends=[glmnet SiZer]; }; - elastic = derive2 { name="elastic"; version="0.6.0"; sha256="1la9099ddhhnv713nhjlia9mali36y6xznbciqn3k91bml3b1am0"; depends=[curl httr jsonlite]; }; + elastic = derive2 { name="elastic"; version="0.7.8"; sha256="0cji7nh6ghjx6di9mw103hyj2am5x75f2lpi0csswbv4r3mslirr"; depends=[curl httr jsonlite]; }; + elasticIsing = derive2 { name="elasticIsing"; version="0.2"; sha256="1zjgvz7w5j06x2cd1fzjl85di95ah67m1lanw01kic2bvhfwfbn6"; depends=[cvTools glmnet magrittr qgraph reshape2]; }; elasticnet = derive2 { name="elasticnet"; version="1.1"; sha256="1x8rwqb275lz86vi044m1fy8xanmvs7f7irr1vczps1w45nsmqr2"; depends=[lars]; }; + elasticsearchr = derive2 { name="elasticsearchr"; version="0.2.0"; sha256="0hw2pwfh6k8q1646cprg3d84acwgw5bi7vmp7wrnxkxg7npz5pyz"; depends=[httr jsonlite]; }; elec = derive2 { name="elec"; version="0.1.2"; sha256="0f7ahrjb52w8a8l5v00xla6z9afpz2zrckl9v04xalp34snhdwan"; depends=[]; }; elec_strat = derive2 { name="elec.strat"; version="0.1.1"; sha256="09196k5c3jsikh98d33bn70izwcbx0wb5ki9fv1ij0dw9mnv4c3p"; depends=[elec]; }; + electionsBR = derive2 { name="electionsBR"; version="0.2.0"; sha256="1mcnmrnjkb9qwnbh79kfl90dqji2imq9s9jsx6h8d5ccmjfdmzl7"; depends=[dplyr magrittr]; }; + elementR = derive2 { name="elementR"; version="1.2"; sha256="030ljdk8qbvv81bjr1pxg597mq1i22fpjzqdcrbrgl1c508ms2l2"; depends=[abind devtools gdata gnumeric lmtest R6 reader readODS readxl shiny shinydashboard shinyjs stringr tcltk2]; }; + elevatr = derive2 { name="elevatr"; version="0.1.1"; sha256="0dwq748f4nfz41j6jc5v7l4gdrwkjrfqmivkiz799yq0pql9djar"; depends=[httr jsonlite prettyunits progress raster ratelimitr rgdal sp]; }; elexr = derive2 { name="elexr"; version="1.0"; sha256="1xmrzlp55z6k3psdg4a3x3rsilvq3k37v9r7ydfn80ahvqjz0fqh"; depends=[]; }; + elhmc = derive2 { name="elhmc"; version="1.0.0"; sha256="0xjl43xa0qw0hwdx73vv8cl1gyd5srdhpcpkap3wbnka4c75wpgj"; depends=[emplik plyr]; }; elliplot = derive2 { name="elliplot"; version="1.1.1"; sha256="1sl85kyjpxiw0gs3syhlhfrci03fl054py7m24xln5vk07665vbp"; depends=[]; }; ellipse = derive2 { name="ellipse"; version="0.3-8"; sha256="0ibz1qvf1qbb5sigyhpxb8hgip69z3wcimk3az1701rg2i64g3ah"; depends=[]; }; - elliptic = derive2 { name="elliptic"; version="1.3-5"; sha256="0hi0r3z6f5yq53v6ii4z35nws2gc00xkk0dncll0sf5nshcj8fl5"; depends=[MASS]; }; + elliptic = derive2 { name="elliptic"; version="1.3-7"; sha256="1bzd5x0yph76jh59ljl875grm52s8xpnmbgww1jjxx0hgkv7938g"; depends=[MASS]; }; elmNN = derive2 { name="elmNN"; version="1.0"; sha256="129r6d3qa48gqvqxks53hdmyk3jjakddsj5fwj91kqq0hkm34kyd"; depends=[MASS]; }; elrm = derive2 { name="elrm"; version="1.2.2"; sha256="0wz0l703v0iyp7nswdmh65n0cy3a7rfvyxd795a6nzk3nich8bfg"; depends=[coda]; }; - emIRT = derive2 { name="emIRT"; version="0.0.6"; sha256="1nl7xri4dv8vxpfckkk0j1xlipacjkkd2n8hklb11fjjmmwm6rhd"; depends=[pscl Rcpp RcppArmadillo]; }; - embryogrowth = derive2 { name="embryogrowth"; version="6.2"; sha256="1l4xh7ay8jwf0qpp37171hmx06l2lwmy0x2gj8gzwdf30b29ldm5"; depends=[deSolve HelpersMG polynom]; }; + emIRT = derive2 { name="emIRT"; version="0.0.8"; sha256="17igda5phgfapjzg7dkid5jj49gmwgpadjr27z7s21365i7md9mz"; depends=[pscl Rcpp RcppArmadillo]; }; + embryogrowth = derive2 { name="embryogrowth"; version="6.4"; sha256="13mh7sh30q1zz4pqg4gwqsky172c0kklypv8n0432dkhmcv14543"; depends=[deSolve HelpersMG polynom]; }; emdbook = derive2 { name="emdbook"; version="1.3.9"; sha256="09xbdyw8a4pvrsg3ryr8drby0njy4avc5wsjj4ffibdaicpchy69"; depends=[bbmle coda lattice MASS plyr]; }; + emdi = derive2 { name="emdi"; version="1.0.0"; sha256="0mldd0b8mh4q72r968kc2lyy97abkw1b7sm50za7ip3m2khzcrj8"; depends=[FNN ggmap ggplot2 gridExtra HLMdiag maptools moments MuMIn nlme openxlsx parallelMap reshape2 simFrame]; }; emdist = derive2 { name="emdist"; version="0.3-1"; sha256="1z14pb9z9nkd0f2c8pln4hzkfqa9dk9n3vg8czc8jiv0ndnqi7rq"; depends=[]; }; emg = derive2 { name="emg"; version="1.0.6"; sha256="1kzmxs224m6scmk8gg5ckx5c7is99hwgwv28yl26hnrbkm59skyh"; depends=[]; }; - emil = derive2 { name="emil"; version="2.2.3"; sha256="004s1l5fv6cjrp7l10hx57yfsbfx3lj6km58idmj18yqy9j194a1"; depends=[data_table dplyr ggplot2 lazyeval magrittr Rcpp tidyr]; }; + emil = derive2 { name="emil"; version="2.2.6"; sha256="182grlb90nsqs17mi09srzlrflf3kzaj5swcgfdyalhlmsgrfrnd"; depends=[data_table dplyr ggplot2 lazyeval magrittr Rcpp tidyr]; }; emma = derive2 { name="emma"; version="0.1-0"; sha256="0psd8lrbcqla8mkhp0wlassaaimgwlmqy5yv2wwcq59mc5k1v27f"; depends=[clusterSim earth]; }; emme2 = derive2 { name="emme2"; version="0.9"; sha256="035s4h95ychqb14wib0dqbg4sjy9q01fsryr0ri25g1hsi5f8lpm"; depends=[reshape]; }; emoa = derive2 { name="emoa"; version="0.5-0"; sha256="1wcnsnkdmpcn21dyql5dmj728n794bmfr6g9hgh9apzbhn4cri8p"; depends=[]; }; - emojifont = derive2 { name="emojifont"; version="0.3.2"; sha256="0jb08mhxn3b060dnncbmn4lwd0xawbaj5laskpc9sr3i26cicxk8"; depends=[proto showtext sysfonts]; }; - emov = derive2 { name="emov"; version="0.1"; sha256="1jzssxk7c26ylfb70p9s631bz63fgvrqc105p7536n0kgxy21f7b"; depends=[]; }; + emojifont = derive2 { name="emojifont"; version="0.4.0"; sha256="1g4bibrzjjgw3swzly590p9c1zipddzr8bgfydcqcbsqigzwvpj8"; depends=[ggplot2 proto showtext sysfonts]; }; + emon = derive2 { name="emon"; version="1.3"; sha256="025pl4biwncwb5cfpm0mb1r7wjv6akg1qkzz0bfnbp44sl58kfsc"; depends=[MASS mgcv]; }; + emov = derive2 { name="emov"; version="0.1.1"; sha256="04w0bjyxvfb4ky573byp7j9b7x4gqycr5pgpnsl6rzag00zsf45a"; depends=[]; }; empiricalFDR_DESeq2 = derive2 { name="empiricalFDR.DESeq2"; version="1.0.3"; sha256="0h2mcdw4v3ac6dn0s4z37l4sdzbi12sxrnn0f0gc9z207dyyf6w3"; depends=[DESeq2 GenomicRanges]; }; - emplik = derive2 { name="emplik"; version="1.0-2"; sha256="1sx8hsvv36idraji2vic6x025wp41bg4p73zqp2d716wmhgdkwgj"; depends=[quantreg]; }; + emplik = derive2 { name="emplik"; version="1.0-3"; sha256="0b52383m2djdcg9b1a7r10k5pkzljz6dalvbg2gg962ckvpndb11"; depends=[quantreg]; }; emplik2 = derive2 { name="emplik2"; version="1.20"; sha256="0qdsfmnvds01qa4f112knv905k0fzccrqj9fwaqrqcy48cigm8pd"; depends=[]; }; + emuR = derive2 { name="emuR"; version="0.2.1"; sha256="0lfgv2lbzp8l6f51mdfx6y0dj26w74ych924mlbpi53vm3sqa266"; depends=[base64enc data_table DBI dplyr httpuv jsonlite MASS RSQLite stringr uuid wrassp]; }; emulator = derive2 { name="emulator"; version="1.2-15"; sha256="1rp7q7zs8b49jzdkbzm4s1g8554h41hcabf4d78k9jhhys2z28g2"; depends=[mvtnorm]; }; enRich = derive2 { name="enRich"; version="3.0"; sha256="1ni2hkw0pq0mjjqd11qqrc3lbzyif84ljh9zrn2yil1qk2882r1n"; depends=[]; }; enaR = derive2 { name="enaR"; version="2.9.1"; sha256="1ryxzrdq9f88bvkyf6vdg61vfcjw1mj4dzzj8kliaf0h3ygzyaw1"; depends=[gdata MASS network sna stringr]; }; + encode = derive2 { name="encode"; version="0.2"; sha256="0sv881rpbfq1843f6bfa54jlj8ayrznyqxa6j4ngpx7ynyj84qwx"; depends=[]; }; endogMNP = derive2 { name="endogMNP"; version="0.2-1"; sha256="0maxcp321ngbxrg0i23nlwhj849v771xahh53367x928ss4f8v7i"; depends=[]; }; - endorse = derive2 { name="endorse"; version="1.4.1"; sha256="0xyi2cq4k4xa8kr717i4njl6rgjf5z99056jbhp2rbzfyy4sw61d"; depends=[coda]; }; - energy = derive2 { name="energy"; version="1.6.2"; sha256="008yf4r6546mzk9q515zliqxyjx6w0z19g5wlarg7f4lrzsmqiaw"; depends=[boot]; }; - english = derive2 { name="english"; version="1.0-1"; sha256="1413axjp2icj9wwnkz3vl4gvrwlgmjpc2djzv5bllbnc4a4dgj24"; depends=[]; }; - enigma = derive2 { name="enigma"; version="0.2.0"; sha256="0a45fp9lmxrdwpa7y3sfbgcijw5ss2fz7j2r7qnc0ask1x4yfqr4"; depends=[httr jsonlite plyr]; }; - enpls = derive2 { name="enpls"; version="1.1"; sha256="0vwl714w441c6wv9jnmyfzjd055ydia6qvwv6vrmnfasv3q5ny7z"; depends=[doParallel foreach pls]; }; + endogenous = derive2 { name="endogenous"; version="1.0"; sha256="079fmfxl9gf080zq5m1ixmgry9dawg2y6ixbfyc5da5jxf3zk9h8"; depends=[mvtnorm]; }; + endorse = derive2 { name="endorse"; version="1.5.0"; sha256="0nyrcbrq8c5q2h45g1iz4n845kf3lvcwsj9j9ngkma17vbqf91hl"; depends=[coda]; }; + endtoend = derive2 { name="endtoend"; version="1.0"; sha256="0x8f6h0mznmncqdwvsp2f0x524g5clgvk64qflf373lyn6h1v0ap"; depends=[]; }; + energy = derive2 { name="energy"; version="1.7-0"; sha256="1g4hqi6mgsnd1w4q7dd2m40ljh2jdmvad91ksbq9fscnrqpvji1x"; depends=[boot Rcpp]; }; + energyr = derive2 { name="energyr"; version="0.1.1"; sha256="1mid5f8l6v55pjzfx304a303mkn9b5r3jzmjl2fi2pz4v2jsdw04"; depends=[RgoogleMaps]; }; + english = derive2 { name="english"; version="1.1-1"; sha256="09g4srg9wkmr0w9yssp491g0fkripwlhp790mjwanb03wbvz8g2d"; depends=[]; }; + engsoccerdata = derive2 { name="engsoccerdata"; version="0.1.5"; sha256="06fdgjgnk4lwshrkd0jad411x5nz9sxlri9fdhxrf2dr2hik4l8q"; depends=[dplyr magrittr tidyr]; }; + enigma = derive2 { name="enigma"; version="0.3.0"; sha256="0ld3jhxrpyrhjklwif4jf1rn9ykx218pqzn9bfl0qdxr6cr4hhwy"; depends=[crul jsonlite plyr tibble xml2]; }; + enpls = derive2 { name="enpls"; version="5.7"; sha256="1c5brjddbaw4y23zpdaybkkgh4i2nsv5n5cvyv0jqi18qhx2s7rz"; depends=[doParallel foreach ggplot2 plotly pls reshape2 spls]; }; enrichvs = derive2 { name="enrichvs"; version="0.0.5"; sha256="0x91s03hz1yprddm6mqi75bm45ki3yapfrxmap7d4qc0hi06h22k"; depends=[]; }; - ensembleBMA = derive2 { name="ensembleBMA"; version="5.1.2"; sha256="0cfasrs1paz60na8by9zk0c5jc48l9djvn6c64ygjl1rapz389d4"; depends=[chron]; }; + enrichwith = derive2 { name="enrichwith"; version="0.0.2"; sha256="08kzj805mnxg23b3q5ayj8fp66qf5maiky1prv8mgxyays8yv4dl"; depends=[]; }; + ensembleBMA = derive2 { name="ensembleBMA"; version="5.1.3"; sha256="1iscg03v691cyfma3fs6xnj9chf5arlg61bggg2wmkczp7gnsi3g"; depends=[chron]; }; ensembleMOS = derive2 { name="ensembleMOS"; version="0.7"; sha256="0g5qzdic5jvgn6wv7zh0jnz8malfgfxn26l7lg30y96vcmi4hk54"; depends=[chron ensembleBMA]; }; + ensembleR = derive2 { name="ensembleR"; version="0.1.0"; sha256="0xvq1jlsp7gsk46i847nfvadxwlh09gi2rgwss2wf2xmh1855ray"; depends=[caret]; }; ensurer = derive2 { name="ensurer"; version="1.1"; sha256="1gbbni73ayzcmzhxb88pz6xx418lqjbp37sdkggbrxcyhsxpdkid"; depends=[]; }; - entropart = derive2 { name="entropart"; version="1.4-5"; sha256="0fmwzwydqb9g4qyd7inp9v6vfwrziqp31720vxincq39lka187w2"; depends=[ade4 ape EntropyEstimation geiger vegan]; }; + entropart = derive2 { name="entropart"; version="1.4-6"; sha256="0qvxwqg8fypc2q7a75s7ngqx5ga409p1iw1fdxp84xwdvgdcw07l"; depends=[ade4 ape EntropyEstimation geiger vegan]; }; entropy = derive2 { name="entropy"; version="1.2.1"; sha256="10vg4818q5g54pv2nn9x5i7pvky5nsv96syy47pz2mgqp1273cpd"; depends=[]; }; - enveomics_R = derive2 { name="enveomics.R"; version="1.0.1"; sha256="0p8zh45fvprx7zc6yc2c0k5n8ycsxcm052zlnyambw89g3dr6ix4"; depends=[fitdistrplus modeest sn]; }; - enviPat = derive2 { name="enviPat"; version="2.1"; sha256="1fy0afpvbv55bvbw2isaywi11svwag78007dr28xypd6lm4hfwym"; depends=[]; }; - enviPick = derive2 { name="enviPick"; version="1.4"; sha256="1jcjaa1kx6c3775k11ydn6sww0jg7kmmi8ikrk56q8j3wsbdhgyi"; depends=[readMzXmlData shiny]; }; + enveomics_R = derive2 { name="enveomics.R"; version="1.1.1"; sha256="0vz4cz52dx8r7zkgb3d8w2716g0g23rb638sf2b6asbfp2h2w5f6"; depends=[fitdistrplus investr modeest sn]; }; + enviGCMS = derive2 { name="enviGCMS"; version="0.1.1"; sha256="1wvanngizif7yx91f15v5mgs0dib01g440f4nvi0iid2hzx9ls4q"; depends=[mixtools rcdk xcms]; }; + enviPat = derive2 { name="enviPat"; version="2.2"; sha256="1cf1h4v05riivjwil4167sncdxzgxf3r4snx1imjb6s4msx67ibi"; depends=[]; }; + enviPick = derive2 { name="enviPick"; version="1.5"; sha256="04q6zwqq2ip8b8h2n1jpgx1bzcvi7lazljs0806wiakbc79x232p"; depends=[readMzXmlData shiny]; }; + envirem = derive2 { name="envirem"; version="1.1"; sha256="07mlyaqjwwrh9dbc78ik61wrrpg344fg3rb12l6v6hzn04yp26pz"; depends=[raster RSAGA]; }; envlpaster = derive2 { name="envlpaster"; version="0.1-2"; sha256="11a5n40k1ln5gxxvwq1vh4dhmhifhlm89hkhf36qnhj4bjh3v3y0"; depends=[aster aster2 caTools MASS]; }; epade = derive2 { name="epade"; version="0.3.8"; sha256="1alvsifc6i71ilm1xxs1d7sqlapb48bqd6z2n4wi6pqcjvwp7bif"; depends=[plotrix]; }; epandist = derive2 { name="epandist"; version="1.1.1"; sha256="0hxgbjns5bk82rgcmykxifnnxcnqdzmkimkkmpdif64zr5g3gjdg"; depends=[]; }; - epanetReader = derive2 { name="epanetReader"; version="0.3.1"; sha256="01f9q8i57ym5dvhn2jqkdlr1id8cv63yasbzmbhgl03bfgsibaya"; depends=[]; }; + epanetReader = derive2 { name="epanetReader"; version="0.4.0"; sha256="0pa44wp8cq8xf2835k3gch0m40s7l7r9f0scyizk54nv6cdq88cx"; depends=[]; }; epiDisplay = derive2 { name="epiDisplay"; version="3.2.2.0"; sha256="1f9kifjgdwxs7c236nsr369ij71rj7l5ady88h4n5p5pjw2h451a"; depends=[foreign MASS nnet survival]; }; - epiR = derive2 { name="epiR"; version="0.9-74"; sha256="1k5095lp7sby0xsdwki16g0yd22k06aiqr2xrgwss5i1vc08laid"; depends=[BiasedUrn survival]; }; + epiR = derive2 { name="epiR"; version="0.9-79"; sha256="08gfy4ri4haxi82zs4xngrabimvajlrbw1s1dqwl0gfjz4zdklby"; depends=[BiasedUrn survival]; }; epibasix = derive2 { name="epibasix"; version="1.3"; sha256="0d0087sa8lqw35pn7gdg2qqzw3dvz57sgavymwl1ybcj5d4lsbyk"; depends=[]; }; - epifit = derive2 { name="epifit"; version="0.0.6"; sha256="0k72w9x81l7a6wn4syz0qjaijlhfaflkffd1cjz7szv6cfnl97s2"; depends=[MASS]; }; + epidata = derive2 { name="epidata"; version="0.1.0"; sha256="1lp6hnjzga787abq94k8v48wlikpp5hj1xwmxc8nj1imyr4r8a4h"; depends=[dplyr httr jsonlite purrr readr rvest stringi tidyr xml2]; }; + epifit = derive2 { name="epifit"; version="0.1.2"; sha256="1i1ngb5kh03gyx1702fwav3dc3mqry1wjzc7ry36hdw0ngawid34"; depends=[MASS]; }; epinet = derive2 { name="epinet"; version="2.1.7"; sha256="10mqc3xy24mjbk9np5mp41216hj6yc9jqxl3ybgysmd80y3qgf39"; depends=[network]; }; + episensr = derive2 { name="episensr"; version="0.8.0"; sha256="0ryn3p7vg4dq976ncm48i1kx42sanmzyyslvq0wiqijkl0172x19"; depends=[boot ggplot2 gridExtra plyr reshape trapezoid triangle]; }; + episheet = derive2 { name="episheet"; version="0.2.0"; sha256="15c4xbam9b60xkkgmbswj4raln49hk43pxp2l75a7j1wykgkif95"; depends=[dplyr ggplot2 magrittr tidyr]; }; episplineDensity = derive2 { name="episplineDensity"; version="0.0-1"; sha256="0nmh97xajnnh54i04yq8fdici4n5xvcbpdbjdbz79483gnils4vn"; depends=[nloptr pracma]; }; + epistasis = derive2 { name="epistasis"; version="0.0.1-1"; sha256="0dfh26bs72i01hpxpgpgyiwpmg9mjpib8zynhc5ssxa0skm518wz"; depends=[glasso igraph Matrix tmvtnorm]; }; epitools = derive2 { name="epitools"; version="0.5-7"; sha256="163sibnbihdsnkxf313fr8n8rh5d64dwjagv95vhhzr87f21sw22"; depends=[]; }; + eply = derive2 { name="eply"; version="0.1.0"; sha256="18q40n06gbqg5cs0jknlxk5x0pwcbjnfb27ysmbf76s826qdc8gh"; depends=[magrittr]; }; epoc = derive2 { name="epoc"; version="0.2.5-1"; sha256="1r19cvcqf39yf09n3znbdy3dsr7z96yx6zib6031mqqdsxaav5qd"; depends=[elasticnet graph irr lassoshooting Matrix Rgraphviz survival]; }; epr = derive2 { name="epr"; version="2.0"; sha256="1xqc0jhgdwwvilqpljxzpzz3wx30kigy09sxvzcfvsjmxyyvflqy"; depends=[car]; }; + epxToR = derive2 { name="epxToR"; version="0.1-0"; sha256="1nvm9cr12lvh877xxiyii0gbfs6r0px76f5qlpn3pdlgj59msn3s"; depends=[httr XML]; }; eqs2lavaan = derive2 { name="eqs2lavaan"; version="3.0"; sha256="1lj6jwkfd84h9ldb6l74lrx2pnsl1c0d7mnrcrjkska87djb2nzd"; depends=[lavaan stringr]; }; eqtl = derive2 { name="eqtl"; version="1.1-7"; sha256="0xfr8344irhzyxs9flnqn4avk3iv1scqhzac5c2ppmzqhb398azr"; depends=[qtl]; }; - equate = derive2 { name="equate"; version="2.0-3"; sha256="0y37nxily7zjx00z7h4vmpn8cs7bl3aravhjkjz9l6y0fv0rc5vv"; depends=[]; }; - equateIRT = derive2 { name="equateIRT"; version="1.2-3"; sha256="1v8hk50b132j5r2wg508cdww7slgwcik7y2zn7dy56qq2plb4mkz"; depends=[mirt statmod]; }; - equivalence = derive2 { name="equivalence"; version="0.7.1"; sha256="1nm4s92acin5c2qnvgsafx7c10jyxmqgh33ciq271ycciwc4idy3"; depends=[boot lattice PairedData]; }; + equSA = derive2 { name="equSA"; version="1.0.0"; sha256="1yq8f1svh8cg9pgharnb5ijxf692rm2avjvd6xabsv8jid25618l"; depends=[huge igraph mvtnorm XMRF ZIM]; }; + equate = derive2 { name="equate"; version="2.0.6"; sha256="0fkgz4747wf2n1sfkskpbp20zdmxvykqhncr7a8wl5lp314r48x3"; depends=[]; }; + equateIRT = derive2 { name="equateIRT"; version="2.0-1"; sha256="07kyy0adg42vzg26ssfwy5hiwggymbkkpvyczhzch4113lipz6pd"; depends=[mirt statmod]; }; + equivalence = derive2 { name="equivalence"; version="0.7.2"; sha256="170l5gnk0dkjkfsx7qyrw56ircwsjzz9cvhakgyrqh7bj5734i79"; depends=[boot lattice PairedData]; }; + erah = derive2 { name="erah"; version="1.0.5"; sha256="00vygdrngbp53wip2x6dni3ygwax309i9si3gyqkxxbbkpv24b7i"; depends=[caTools HiClimR igraph ncdf4 nnls osd quantreg Rcpp signal XML]; }; erboost = derive2 { name="erboost"; version="1.3"; sha256="09hlpn6mqsmxfrrf7j3iy8ibb2lc4aw7rxy21g3pgqdmd9sbprim"; depends=[lattice]; }; erer = derive2 { name="erer"; version="2.5"; sha256="0wgzd7r63d20vghmbilqn1p5033i5p31asya1gzwlipgyfxmqp0b"; depends=[lmtest systemfit tseries urca]; }; - ergm = derive2 { name="ergm"; version="3.5.1"; sha256="1myn7vhvwvf443im58f2vwnq26asmybhwjk9fv77qs5ac5y594x6"; depends=[coda lpSolve Matrix network robustbase statnet_common trust]; }; - ergm_count = derive2 { name="ergm.count"; version="3.2.0"; sha256="0qrldigkygr8k8v3njy0pclgv7z64dazknpf0m567i1nz8715yhy"; depends=[ergm network statnet_common]; }; + ergm = derive2 { name="ergm"; version="3.6.1"; sha256="1gjl1gil4vkcwrbb1fcri3jkdqy1m3bqqinw2g3fnv69m2k38szh"; depends=[coda lpSolve MASS Matrix network robustbase statnet_common trust]; }; + ergm_count = derive2 { name="ergm.count"; version="3.2.2"; sha256="1zg07vm5y6n6r687sbdy5hcinsircm4zzkx5w4849s9kwjlnpn0b"; depends=[ergm network statnet_common]; }; + ergm_ego = derive2 { name="ergm.ego"; version="0.3.0"; sha256="1152g9zz2wach0hbj27knxficvhf062alqa0wpj6nyqj2vsgnchh"; depends=[coda ergm network RColorBrewer statnet_common]; }; ergm_graphlets = derive2 { name="ergm.graphlets"; version="1.0.3"; sha256="0xk45ialjckvjs96k19skk7imilcahgyzfwc74h6yand5q3mg6fz"; depends=[ergm network statnet_common]; }; + ergm_rank = derive2 { name="ergm.rank"; version="1.0.1"; sha256="0k5ffqxn9fspbg82j2cmrcyav3nqjk7cnsq48xwy9i3z3vaq704k"; depends=[ergm network statnet_common]; }; ergm_userterms = derive2 { name="ergm.userterms"; version="3.1.1"; sha256="0pvklvyxi7sjc5041zl8vcisni0jz1283gyjw5mhas9bl47g1cwc"; depends=[ergm network statnet_common]; }; ergmharris = derive2 { name="ergmharris"; version="1.0"; sha256="1bfijhsljlykb94wi25lbpv35zkmgqpmgzmxcq98gjvzbn5j9pdq"; depends=[]; }; erp_easy = derive2 { name="erp.easy"; version="1.0.0"; sha256="0md4l48qb2z6c527ir1dwc51z8yw1jq7yx85fxzzg0wh1vzafp1z"; depends=[plyr signal]; }; erpR = derive2 { name="erpR"; version="0.2.0"; sha256="1y6abc5fkcyyjh36maj1zbxppqzwd5wkvzvqahyvzsz5fqpjkcdx"; depends=[rpanel]; }; - errint = derive2 { name="errint"; version="0.1"; sha256="1qv997cb1ndny9k74gg996yyl11dkk5wxklpnh9qr5wdkdc77hhk"; depends=[rootSolve VGAM]; }; + errint = derive2 { name="errint"; version="1.0"; sha256="1ya7fsvwhmgxw87r32m4345n8pw2pbpv026xvml03s1kiam8qwbw"; depends=[rootSolve VGAM]; }; + errorizer = derive2 { name="errorizer"; version="0.2.1"; sha256="10p7ydm81x2gls0wn692llgj2rxhg4s96rv7gvihmgi5dflraypq"; depends=[]; }; + errorlocate = derive2 { name="errorlocate"; version="0.1.2"; sha256="1qlwdvy7i62hpnfrryzmqwmygxa8mjc7q92g6k5n9r2r179q7h09"; depends=[lpSolveAPI validate]; }; esaBcv = derive2 { name="esaBcv"; version="1.2.1"; sha256="0hgjcdbiy1a71vsb2vcyp0xmhy6wi4nlh1sqsfb2vxckc95i9i21"; depends=[corpcor svd]; }; - estimability = derive2 { name="estimability"; version="1.1-1"; sha256="049adh8i0ad0m0qln2ylqdxcs5v2q9zfignn2a50r5f93ip2ay6w"; depends=[]; }; + esaddle = derive2 { name="esaddle"; version="0.0.3"; sha256="04imppwls6a485kdfwykk4s0pyxas3i92ccghi780ys29y0nggmy"; depends=[doParallel mvnfast plyr Rcpp RcppArmadillo]; }; + esc = derive2 { name="esc"; version="0.2.0"; sha256="0ihkmfw6h7lk3a1fzrgjpfz5dh8rfvpr1b7ijljnv7s8pa4yi5na"; depends=[readr]; }; + esmisc = derive2 { name="esmisc"; version="0.0.3"; sha256="1d6xrdxwn85c8s60s7vzaymh7wa9f7fzd79hq5spzd12fr3zisvj"; depends=[ggplot2 raster readr]; }; + estatapi = derive2 { name="estatapi"; version="0.3.0"; sha256="0gjc5x1b2l5qnwdg77nzy6d7bf9q93ll39sfy89izqm8wsydwwkp"; depends=[dplyr httr purrr readr]; }; + estimability = derive2 { name="estimability"; version="1.2"; sha256="13b80bpnbrarazjvnpnk91ljjsqgfm2fm3gy66aj09cmmsmv199h"; depends=[]; }; estout = derive2 { name="estout"; version="1.2"; sha256="0whrwlh4kzyip45s4zifj64mgsbnrllpvphs6i5csb7hi3mdb3i5"; depends=[]; }; etable = derive2 { name="etable"; version="1.2.0"; sha256="17xahaf2fz1qgqjaw8qbnss95il6g47m3w00yqc5nkvv37gs0q7c"; depends=[Hmisc xtable]; }; - etasFLP = derive2 { name="etasFLP"; version="1.3.0"; sha256="1qh8s9ikd2lpchpp4h9z4zvcd9l2gi15dg0i54nxg9acn92yn3hi"; depends=[fields mapdata maps rgl]; }; + etasFLP = derive2 { name="etasFLP"; version="1.4.0"; sha256="04d526yajakzivlcsz8631p0j482cbbgfpdmzkc9zr1m4495xxif"; depends=[fields mapdata maps rgl]; }; + etl = derive2 { name="etl"; version="0.3.5"; sha256="1qxzfcfpa50k6n70nii0qh6lr4rsbc3f2vhp6hj720pc8yg3r0mb"; depends=[DBI downloader dplyr lubridate readr stringr]; }; etm = derive2 { name="etm"; version="0.6-2"; sha256="0sdsm6h502bkrxc9admshkrkqjczivh3av55sha7542pr6nhl085"; depends=[lattice survival]; }; - etma = derive2 { name="etma"; version="1.0-8"; sha256="07vixcanjfwbgf0sv6fs7hsl7qhr171lwhkb0hs2j9mvx3f3by9l"; depends=[]; }; + etma = derive2 { name="etma"; version="1.1-1"; sha256="0g9244yx50y1gw0f37hskbcgyv4nldmzr86v3rmf3afabmjbyzjj"; depends=[]; }; + etrunct = derive2 { name="etrunct"; version="0.1"; sha256="0ayazgyqlc8jcqr03cwfmfhm4pck6xri1r6vkgqy4arqkrrnrcqr"; depends=[]; }; + etseed = derive2 { name="etseed"; version="0.1.0"; sha256="1kqbhvryqzmckk91ynn68yd7msqdsl6h818r164180f10flszr37"; depends=[httr jsonlite R6]; }; eulerian = derive2 { name="eulerian"; version="1.0"; sha256="0yhpnx9vnfly14vn1c2z009m7yipv0j59j3s826vgpczax6b48m0"; depends=[graph]; }; + eulerr = derive2 { name="eulerr"; version="1.1.0"; sha256="00pblvyfhqcvbjwjkq237b7kj99vvkyclam9mpmgrd72wx6ryzr7"; depends=[assertthat lattice latticeExtra Rcpp RcppArmadillo]; }; euroMix = derive2 { name="euroMix"; version="1.1.1"; sha256="13ia6j0iwxhcfv17b5dsq1pk7v1kxaq6njxilxq0hvd57hv0b2a8"; depends=[Familias forensim paramlink]; }; - eurostat = derive2 { name="eurostat"; version="1.2.21"; sha256="1fjknxmf6jzhnrckmldy8gzxlyvy8p3cy9lv2ky8l10ln1ccfbjl"; depends=[httr jsonlite tidyr]; }; - eva = derive2 { name="eva"; version="0.1.3"; sha256="0w425qf1k4h0dif1aav6kid58fyc7v71hz03xb9fbwrqpghwj7xb"; depends=[]; }; - evaluate = derive2 { name="evaluate"; version="0.8.3"; sha256="08d6164m9wqf9qq6yh1s9a0qxwqzqpsq7312hilzy79gxf9gixzr"; depends=[stringr]; }; + europepmc = derive2 { name="europepmc"; version="0.1.2"; sha256="1wdxmhcq7zz0x9rrddp7pswj6pbsfdgwrrlm6lgsv7cvs6cmh1na"; depends=[dplyr httr jsonlite plyr urltools xml2]; }; + europop = derive2 { name="europop"; version="0.3"; sha256="01c31p82r1paxqq209078av9fzkvrl3wp9hz8s79iwf4hlqxbiw6"; depends=[]; }; + eurostat = derive2 { name="eurostat"; version="2.2.43"; sha256="1h3vx0lf6kqvvhcj1ichzsvqhjmskcpvxd37hym6cwwgkkmxrzk3"; depends=[classInt httr jsonlite RColorBrewer readr sp stringi stringr tibble tidyr]; }; + eva = derive2 { name="eva"; version="0.2.4"; sha256="03jsiz6bkavwxpgllxaw8czahmm2rh5h8hhk5j7i9clcjx244vvj"; depends=[EnvStats Matrix]; }; + evaluate = derive2 { name="evaluate"; version="0.10"; sha256="0mwna7rjyrmc76651a1fm7c76ippdsc2wsp3sj3iwb1c73mvlqv1"; depends=[stringr]; }; + evclass = derive2 { name="evclass"; version="1.1.0"; sha256="1h0lqf6wixsbcs4hnpzsjhsj8fifh9z5r90zcwscj1vk7aqf9cwg"; depends=[FNN]; }; + evclust = derive2 { name="evclust"; version="1.0.3"; sha256="0cd0a8w0ixd9ilcqlxiaql4l2r49qrqnllb9qpg3xgnlxka3yb5m"; depends=[FNN limSolve Matrix R_utils]; }; evd = derive2 { name="evd"; version="2.3-2"; sha256="0n81plbw2p83c10y6a6hvqkxcbfqjdc41p02zyklbcafga1m4gdy"; depends=[]; }; evdbayes = derive2 { name="evdbayes"; version="1.1-1"; sha256="0lfjfkvswnw3mqcjsamxnl8hpvz08rba05xcg0r47h5vkgpw5lgd"; depends=[]; }; + event = derive2 { name="event"; version="1.1.0"; sha256="1nq34bz9dsixidym3n255vmap3gjx9nfk8pc5s7w026faf96dr2v"; depends=[rmutil]; }; eventInterval = derive2 { name="eventInterval"; version="1.3"; sha256="0nybzy2mpmazcvz06mkv7l9741mjm3i2q2sindq0777vb2k4504v"; depends=[MASS]; }; events = derive2 { name="events"; version="0.5"; sha256="1zka4ygymifs8snd7cabl11b5lg3f8g8370dkm9ybl40bn8vvqq2"; depends=[]; }; eventstudies = derive2 { name="eventstudies"; version="1.1"; sha256="13l2yhmlpiid9r3njnmvja231l00ym7gvwfbv0m9fk2k5j6gm5id"; depends=[boot xts zoo]; }; + evidenceFactors = derive2 { name="evidenceFactors"; version="1.00"; sha256="12wndimbygn7h57f3q0xmxmvqrcdj98f0a58m22z2l0vmym53rhb"; depends=[sensitivitymv]; }; evir = derive2 { name="evir"; version="1.7-3"; sha256="1kn139vvzdrx5r9jayjb4b0803b0bbppxk68z00gdb50mxgvi593"; depends=[]; }; evmix = derive2 { name="evmix"; version="2.6"; sha256="1rc52mqmzl05n5n1lr990czqgpq9h2x8shnv6s7hvr8896kjasjm"; depends=[gsl MASS SparseM]; }; evobiR = derive2 { name="evobiR"; version="1.1"; sha256="0502xj1gv2g943vfqyllz4sr5z4mixf5vqlqi2v96mymnv9iwsr8"; depends=[ape geiger phytools seqinr shiny]; }; - evolqg = derive2 { name="evolqg"; version="0.2-2"; sha256="1s2zifbzk1mxydbhfw0b4bwhaqqryxdkgnhygd9nyr82physrn8h"; depends=[ape coda depth ggplot2 magrittr Matrix mvtnorm phytools plyr Rcpp reshape2 tidyr vegan]; }; + evolqg = derive2 { name="evolqg"; version="0.2-5"; sha256="11n0gxkxhg1d2ziwbipqvyccgnsrzm3mk4xy2d7nxn662q1yl2ah"; depends=[ape coda expm ggplot2 igraph Matrix matrixcalc MCMCpack mvtnorm plyr Rcpp RcppArmadillo reshape2 vegan]; }; evolvability = derive2 { name="evolvability"; version="1.1.0"; sha256="0lbyidb86yzvcfw86jfwnzbpijn64jr8fasycqq4h3r9c0x2by3j"; depends=[coda]; }; + evoper = derive2 { name="evoper"; version="0.3.0"; sha256="1vbzlskb4l3mnxv8vkdqqrifldhcq053pfy927c0y7h5sfkfajra"; depends=[boot deSolve futile_logger ggplot2 plot3D reshape rrepast]; }; evt0 = derive2 { name="evt0"; version="1.1-3"; sha256="08sbyvx49kp3jsyki60gbbnci26d6yk0yj2zcl4bhfac8c3mm6ya"; depends=[evd]; }; - evtree = derive2 { name="evtree"; version="1.0-0"; sha256="0i37lkdfzvgby98888ndd5wzxs7y11sxf9mh6pqpqgwif05p4z3i"; depends=[partykit]; }; - exCon = derive2 { name="exCon"; version="0.1.14"; sha256="0wm111hy2i3ipf48826r2r5a61s5sjz96p54hwipwpy3j0ahzdsv"; depends=[jsonlite]; }; - exact2x2 = derive2 { name="exact2x2"; version="1.4.1"; sha256="1a4cg8j8kdgwkj27qza6xm5x16m9sb2vczb1b9im8k4pas6v6jpk"; depends=[exactci ssanv]; }; + evtree = derive2 { name="evtree"; version="1.0-2"; sha256="1izcv93irbi5zffyyzag2gcaf8zrhp2lkf3h68gb2jpf5x6wdw64"; depends=[partykit]; }; + exCon = derive2 { name="exCon"; version="0.2.1"; sha256="0rblghg29azzbf8wq7wsypf9jprcy9a2063fhwn0lpxqqgbyzw8v"; depends=[jsonlite]; }; + exact2x2 = derive2 { name="exact2x2"; version="1.5.2"; sha256="12m3kaxdrf4bsw7lrylk15nimhy4sgmjbnlqm684y2kyvii9yrg0"; depends=[exactci ssanv]; }; exactLoglinTest = derive2 { name="exactLoglinTest"; version="1.4.2"; sha256="0j146ih9szzks9r45vq1jf47hrwjq081q1nsja5h1gpllks8217h"; depends=[]; }; exactRankTests = derive2 { name="exactRankTests"; version="0.8-28"; sha256="1n6rr0wax265y9w341x7m2pqwx3cv8iqx1k5qla29z8lqn4ng1nd"; depends=[]; }; exactci = derive2 { name="exactci"; version="1.3-1"; sha256="1mhigk1nzd24qhzgd1j96zlf38dr96c1y5jbmy6lz2sw7g4mmvgm"; depends=[ssanv]; }; exactmeta = derive2 { name="exactmeta"; version="1.0-2"; sha256="1v807ns799qajffky4k18iah0s3qh2ava6sz5i85hwx9dhkz19h4"; depends=[]; }; - exams = derive2 { name="exams"; version="2.1-0"; sha256="13ca4r151424fprc1km58dxbhssvnjn6y6pa2m7wl95v796k20z9"; depends=[]; }; - excursions = derive2 { name="excursions"; version="2.1.1"; sha256="1snrfy1m03mf54v3k9r51zhbjsx05zhzf94rnf4mzyq15fdp22lq"; depends=[Matrix sp spam]; }; + exams = derive2 { name="exams"; version="2.2-0"; sha256="14w0m8jnnpbg153l0gq5lixw68ml3qvnnjyl4dbaiccm2as9spbn"; depends=[]; }; + excursions = derive2 { name="excursions"; version="2.2.2"; sha256="1f6vvv33205lj6hsmmhx3q82mkhh0shzyk5hrwzf2nh1cn61w1x0"; depends=[Matrix sp]; }; exif = derive2 { name="exif"; version="0.1.0"; sha256="12phqn5x1x0xs2xczl3064q983dalm261vqpyafhdcndm1y3gwbc"; depends=[Rcpp]; }; exifr = derive2 { name="exifr"; version="0.1.1"; sha256="0cxi8rcig03qwahdilawg4j3i9a8sv8sxgy0a68pxxmg556dwk0j"; depends=[foreach plyr]; }; - expands = derive2 { name="expands"; version="1.6.1"; sha256="0hx7ggfxlb96dglm1290nn95hhrjjnjc8w39g0s9wq4lrdwfz8a7"; depends=[ape flexmix matlab mclust moments permute rJava]; }; + exp2flux = derive2 { name="exp2flux"; version="0.1"; sha256="1b3ychb4wcf6dbccx2ddms5xygdgc296cnw4474fm81yrfjznplv"; depends=[gage igraph sybil]; }; + expandFunctions = derive2 { name="expandFunctions"; version="0.1.0"; sha256="0661l4ab0xhjidmh8ycvymhp3wgxafm7nd1c59bfpxhyhz76n1p4"; depends=[glmnet orthopolynom plyr polynom]; }; + expands = derive2 { name="expands"; version="1.7.2"; sha256="1yyic21ng5wj61na3d3lw6r2y8iclfhhbkkcrkjy01mx3pp6iiac"; depends=[ape flexmix matlab mclust moments permute rJava]; }; expectreg = derive2 { name="expectreg"; version="0.39"; sha256="1mxhv6phc3lgp0zz20wszx4nr3by9p6492wcb0x8wn8p8p1sy1b3"; depends=[BayesX mboost quadprog]; }; experiment = derive2 { name="experiment"; version="1.1-1"; sha256="07yaf5k5fpymz2yvr52zbbi60g0v84qryvqqjq3sjq2mb1fjfz1p"; depends=[boot MASS]; }; expert = derive2 { name="expert"; version="1.0-0"; sha256="0y9vcigvzhymalpv31b9nvmr86z1dz7x29yj838vks0dsv23rgrf"; depends=[]; }; - explor = derive2 { name="explor"; version="0.2"; sha256="0xlsbj6slp0i4nynhdy2c6vnc8phxkgswg32s0w7cm79v8aag3z1"; depends=[dplyr DT ggplot2 scatterD3 shiny shinyBS tidyr]; }; - expm = derive2 { name="expm"; version="0.999-0"; sha256="1mlkp5d0hbm9nw0lmm7fbwl4b00633bpsg0yshwv0w3fw6dh75xb"; depends=[Matrix]; }; + expint = derive2 { name="expint"; version="0.1-3"; sha256="1gysdlr752f6caanhh1j6jhnplxb73qslink6n4fsv2qdxz0pfvf"; depends=[]; }; + explor = derive2 { name="explor"; version="0.3.1"; sha256="11qc96m0wapsmw9i1z4vgcjwnb5g8zr8mc3m1diiipb9hld4yn7x"; depends=[dplyr DT ggplot2 highr scatterD3 shiny tidyr]; }; + exploreR = derive2 { name="exploreR"; version="0.1"; sha256="154j5wiiy9vqdvh1qvdkz2fdp2phcygbbjl7nj5nkn07xwxbsc77"; depends=[ggplot2]; }; + expm = derive2 { name="expm"; version="0.999-1"; sha256="1d526dn1k9py1hiadnlp4a5dmxcfyfssh57f0v7hfy3gr9qmhn7a"; depends=[Matrix]; }; expoRkit = derive2 { name="expoRkit"; version="0.9"; sha256="0raf0m2nfbdbd1pc4lincyp8y8lgn3bfi4hn0p04plc5p40l1gvc"; depends=[Matrix SparseM]; }; expoTree = derive2 { name="expoTree"; version="1.0.1"; sha256="0hj1x4niqp0ghqik3mz733nc3zpnhyknrdpzpj6y2rfia2ysdiz8"; depends=[ape deSolve]; }; expp = derive2 { name="expp"; version="1.1"; sha256="13zbhkkcshqrpln5gsa051d390q9ij97lawsdbd5j7fj9hxm9pwh"; depends=[deldir rgeos sp spdep]; }; + exprso = derive2 { name="exprso"; version="0.1.8"; sha256="1k3is8f4yfzzkcak9fmm2nk8vi85b0na5r96f3yjbc9qb0av9vb8"; depends=[affy Biobase cluster e1071 kernlab lattice MASS mRMRe nnet pathClass plyr randomForest ROCR sampling]; }; expsmooth = derive2 { name="expsmooth"; version="2.3"; sha256="0alqg777g7zzbjbg86f00p2jzzlp4zyswpbif7ndd0zr8xis6zdc"; depends=[forecast]; }; + expss = derive2 { name="expss"; version="0.5.5"; sha256="1qpj6grmbld8q75kk8rj8l15vm4gqnpq8vbbc81415w3dw2phz84"; depends=[foreign]; }; exptest = derive2 { name="exptest"; version="1.2"; sha256="0wgjg62rjhnr206hkg5h2923q8dq151wyv54pi369hzy3lp8qrvq"; depends=[]; }; exreport = derive2 { name="exreport"; version="0.4.1"; sha256="0vj60rchhrc5q6x1kv7b95fcmh2a5qynli2w54rrrw1nx54xm8c2"; depends=[ggplot2 reshape2]; }; exsic = derive2 { name="exsic"; version="1.1.1"; sha256="1k6nqs9i4iivxnk4nkimp6zvdly274wibkmx9n0wz01gnzxqil0p"; depends=[markdown stringr]; }; - extRemes = derive2 { name="extRemes"; version="2.0-7"; sha256="1dghhmwph65vhq2pnn461cxs1qrfm3kq8dqsilpfkm30jvblv8dv"; depends=[car distillery Lmoments]; }; + extRemes = derive2 { name="extRemes"; version="2.0-8"; sha256="0pnpib3g2r9x8hfqhvq23j8m3jh62lp28ipnqir5yadnzv850gfm"; depends=[car distillery Lmoments]; }; extWeibQuant = derive2 { name="extWeibQuant"; version="1.1"; sha256="08dzw5xfgqx0c7ac632c5mg5jmjjw7wwpcr4c9lvz5rv72ykh2rh"; depends=[]; }; + exteriorMatch = derive2 { name="exteriorMatch"; version="1.0.0"; sha256="0cdfj1n502iws1g03rk7x0c18zyazqf3vci9kjm6lrv4j2qwrvip"; depends=[]; }; extfunnel = derive2 { name="extfunnel"; version="1.3"; sha256="162w5b2wjs3yqy8jisamsapav6swa8sskf1b6x5hglnrv3i4qyyy"; depends=[rmeta]; }; extlasso = derive2 { name="extlasso"; version="0.2"; sha256="05774y0i01lrbyws6zx5ymhcglllv1wc7gzrnyx8i5d1lxdinsyd"; depends=[]; }; extraBinomial = derive2 { name="extraBinomial"; version="2.1"; sha256="0qmvl35f7n78kghszwyaz4wzbswqy4p98c3b6alzrc2ldsq6pq5z"; depends=[]; }; + extraDistr = derive2 { name="extraDistr"; version="1.8.3"; sha256="0xrjcwvmmz5g68cm2q6imkjm3v6mb6xnkmf8svqkg1825hd18g34"; depends=[Rcpp]; }; extraTrees = derive2 { name="extraTrees"; version="1.0.5"; sha256="1rvvp2p9j8ih8fid1n17606pa23bjg3i2659w1l6w0jkb1p23zcx"; depends=[rJava]; }; extracat = derive2 { name="extracat"; version="1.7-4"; sha256="1dply8sx9r9vshi5dycxs7bchf5g33qbq7w6i5w830glfy0lk3i5"; depends=[colorspace data_table ggplot2 hexbin plyr reshape2 scales TSP]; }; extrafont = derive2 { name="extrafont"; version="0.17"; sha256="0b9k2n9sk23bh45hjgnkxpjyvpdrz1hx7kmxvmb4nhlhm1wpsv9g"; depends=[extrafontdb Rttf2pt1]; }; extrafontdb = derive2 { name="extrafontdb"; version="1.0"; sha256="115n42hfvv5h4nn4cfkfmkmn968py4lpy8zd0d6w5yylwpzbm8gs"; depends=[]; }; + extremeStat = derive2 { name="extremeStat"; version="1.3.0"; sha256="1hj78ks4wfb0awkpg4qyrhy7f9rz0rxl9ddgsas3730snyfhspx6"; depends=[berryFunctions evd evir extRemes fExtremes ismev lmomco pbapply RColorBrewer Renext]; }; + extremefit = derive2 { name="extremefit"; version="0.2.0"; sha256="1zzwn6r6zmxzaiq4h5jclz4ys24j8ffzq194hkw72rzblyzj8gcz"; depends=[]; }; extremevalues = derive2 { name="extremevalues"; version="2.3.2"; sha256="0pyngxljdnjwnbwcb0gmxcirv70r1s1wyq4m1wm5rprpdj8v9xil"; depends=[gWidgets gWidgetstcltk]; }; - extremogram = derive2 { name="extremogram"; version="1.0.0"; sha256="196y63q9hnkf3hgizcz8a40wcmwmrm5yfail9sjh3kb40sb3nipi"; depends=[boot MASS]; }; + extremogram = derive2 { name="extremogram"; version="1.0.2"; sha256="13k869v6j4ik9p8w0gf1absvb45xbd3nnwghsz0ix7y0vyvry358"; depends=[boot MASS]; }; + eyelinker = derive2 { name="eyelinker"; version="0.1"; sha256="1lwpm247czqm26zvv5c6lkhdxpp4svszfw74g9ys9vwvwhry9c15"; depends=[intervals magrittr plyr readr stringi stringr]; }; eyetracking = derive2 { name="eyetracking"; version="1.1"; sha256="0ajas96s25hjp3yrg42hp78qjhl1aih04mjirkskx32qsyq5hfpv"; depends=[]; }; eyetrackingR = derive2 { name="eyetrackingR"; version="0.1.6"; sha256="0azfakn5kh80bvywqf52wy3c0q5k13zcasniggjf273f5z1415pn"; depends=[broom dplyr ggplot2 lazyeval tidyr zoo]; }; - ez = derive2 { name="ez"; version="4.3"; sha256="1ypdp52fy382p14hri7my98wpjpl13lp9mdfk5lndiafmd20zl3j"; depends=[car ggplot2 lme4 MASS Matrix mgcv plyr reshape2 scales stringr]; }; - ezec = derive2 { name="ezec"; version="0.1.0"; sha256="157gnwikr1w5zfh2nbnvnhw7wq62b56yjhx5i63y8ds86vzhngvy"; depends=[dplyr drc]; }; + ez = derive2 { name="ez"; version="4.4-0"; sha256="0a58s94x576dfz7wcbivrr2hmdh5x1vy16zwkqp9fmdzqx38pagq"; depends=[car ggplot2 lme4 MASS Matrix mgcv plyr reshape2 scales stringr]; }; + ezec = derive2 { name="ezec"; version="1.0.1"; sha256="0lpx55a8fhy6fqdv3zvzx9mh75q34r71v5kp96hkm9jzl4yvrpd2"; depends=[dplyr drc]; }; ezglm = derive2 { name="ezglm"; version="1.0"; sha256="0x7ffk3ipzbdr9ddqzv0skmpj5zwazkabibhs74faxnld7pcxhps"; depends=[]; }; - ezknitr = derive2 { name="ezknitr"; version="0.3.1"; sha256="0786bp8k3jpzdk7a98m7203cghavs9zh114418fkwnlrjnwkhsna"; depends=[knitr markdown R_utils]; }; + ezknitr = derive2 { name="ezknitr"; version="0.6"; sha256="060a2175zh1nhzmqgz1mpj2c6721n5w5bv695jj4rbl2s2b2h4qj"; depends=[knitr markdown R_utils]; }; ezsim = derive2 { name="ezsim"; version="0.5.5"; sha256="03x75vmf75qsmk4zb09j7xrb11w31rpfwd3dvv12nwjgndh9bnld"; depends=[digest foreach ggplot2 Jmisc plyr reshape]; }; - ezsummary = derive2 { name="ezsummary"; version="0.1.9"; sha256="0fqg0slxg760km2gfd534xkl3g19p8imi7a8k2nmzac6lp92irj7"; depends=[dplyr reshape2 tidyr]; }; + ezsummary = derive2 { name="ezsummary"; version="0.2.1"; sha256="16rwg1h7gs7mnkmbwfb273fy1pwdq9ng6l4ad00anpmilqcck5ng"; depends=[dplyr tidyr]; }; fANCOVA = derive2 { name="fANCOVA"; version="0.5-1"; sha256="034m2mmm6wmsjd41sg82m9ppqjf4b1kgw5vl2w7kzqfx0lypaiwv"; depends=[]; }; fArma = derive2 { name="fArma"; version="3010.79"; sha256="1byxyy4afl1gq58r1cmc5p6frdr9rljr1x3pdnc8nj8rr65lkg72"; depends=[fBasics timeDate timeSeries]; }; fAsianOptions = derive2 { name="fAsianOptions"; version="3010.79"; sha256="1w9ph3rz6cd7g275flzsnqxwd3r5xin6pkini8pbsi9s8hbqv3vl"; depends=[fBasics fOptions timeDate timeSeries]; }; @@ -4106,7 +5094,7 @@ in with self; { fExoticOptions = derive2 { name="fExoticOptions"; version="2152.78"; sha256="0h58prj8nh340b0fxxkgg4bk25yxvb4f8ppq677hr12x8sysf1a8"; depends=[fBasics fOptions timeDate timeSeries]; }; fExpressCertificates = derive2 { name="fExpressCertificates"; version="1.2"; sha256="1r4qkhf7alasbwjz910b0x4dlzm72af06kv7v2vwyzvf3byn21c5"; depends=[fCertificates Matrix mvtnorm tmvtnorm]; }; fExtremes = derive2 { name="fExtremes"; version="3010.81"; sha256="0bzgnn0wf7lqhj7b2dbbhi61s8fi2kmi87gg9hzqqi6p7krnz1n5"; depends=[fBasics fGarch fTrading timeDate timeSeries]; }; - fGarch = derive2 { name="fGarch"; version="3010.82"; sha256="08q452pasvjhsg2ks6c52lqg276hlbdwk0vh25xya2bw2bgbqy99"; depends=[fBasics timeDate timeSeries]; }; + fGarch = derive2 { name="fGarch"; version="3010.82.1"; sha256="0n5mzqc7lj7h63rf4nw4w3mics02gaf049c7m3bjfbp5cwwnf9pf"; depends=[fBasics timeDate timeSeries]; }; fICA = derive2 { name="fICA"; version="1.0-3"; sha256="0gbmjg1az3v413xgdzkjinfy5wri8963w38jnk0p0h2zd8gdkpfs"; depends=[JADE Rcpp RcppArmadillo]; }; fImport = derive2 { name="fImport"; version="3000.82"; sha256="07yqppl8sbfa0x9k4n7hh6hcgyxpcvlk74hhylib4nzqm70bn0sq"; depends=[timeDate timeSeries]; }; fMultivar = derive2 { name="fMultivar"; version="3011.78"; sha256="115hqbbxsdjs5v2rhalg8vz0m5lyg8ppjjqmbq1x21jdnbg6l0fl"; depends=[cubature fBasics mvtnorm sn timeDate timeSeries]; }; @@ -4117,67 +5105,89 @@ in with self; { fSRM = derive2 { name="fSRM"; version="0.6.4"; sha256="1n91gzjx9r3r3xl400w38miva0b69c0f23h2056kq9p1bax2nm86"; depends=[foreign ggplot2 gridExtra lavaan plyr reshape2 scales tcltk2]; }; fTrading = derive2 { name="fTrading"; version="3010.78"; sha256="0qakjxnr5nslw06ywlj65m3w7pjgn5hixxc2rnqhvvvmjpdxybz7"; depends=[fBasics timeDate timeSeries]; }; fUnitRoots = derive2 { name="fUnitRoots"; version="3010.78"; sha256="04nwwazd8jvzds6p4njzq4wpcsrvvvs0y9z8v8r402myd4856ssm"; depends=[fBasics timeDate timeSeries urca]; }; + fabCI = derive2 { name="fabCI"; version="0.1"; sha256="123bc56nnx6hcj257imsd8sc6d0pggw08lf4m0lr90631gcm1mkn"; depends=[]; }; + face = derive2 { name="face"; version="0.1-2"; sha256="06rpjr588yh5v4z33j4lc1m5r1jj2zsaxfmx1h6h2z4cqlgrvxax"; depends=[Matrix matrixcalc mgcv]; }; + factoextra = derive2 { name="factoextra"; version="1.0.4"; sha256="1lzf99184sbc9x3skp8hp8cjlj0w8mvm4vnwj03smfgm9sh01874"; depends=[abind cluster dendextend FactoMineR ggplot2 ggpubr ggrepel reshape2 tidyr]; }; factorQR = derive2 { name="factorQR"; version="0.1-4"; sha256="1vl01fm5qfyhnqbl5y86vkr50b8cv07vzlqs3v6smqaqq6yp4lv4"; depends=[lattice]; }; - factorplot = derive2 { name="factorplot"; version="1.1-1"; sha256="1l8pabf32dr12l7b4dgv5jaxpsjymgdxc51miv72zczrx8adc7da"; depends=[multcomp nnet]; }; + factorcpt = derive2 { name="factorcpt"; version="0.1.2"; sha256="17hwlsrj0fx4x05p6xvs6kl43a24icmnrzyvpf2vam5imwvmpvmm"; depends=[doParallel fields foreach iterators Rcpp RcppArmadillo]; }; + factorplot = derive2 { name="factorplot"; version="1.1-2"; sha256="025lfk122w66yxym3njcpzwnbhg40xi7p1c9vnxczcb8kz31745s"; depends=[multcomp nnet]; }; + factorstochvol = derive2 { name="factorstochvol"; version="0.8.3"; sha256="0dcasii1dfkmng29a7d4k6kyy9lyrbcr06gqyg61h07xf2j3qwla"; depends=[corrplot GIGrvg Rcpp RcppArmadillo stochvol]; }; factualR = derive2 { name="factualR"; version="0.5"; sha256="1wz8ibcmilcx62yy29nd2i1pdmjf7fm0g9i5s58gdn8cjlhnw1jl"; depends=[RCurl RJSONIO]; }; fail = derive2 { name="fail"; version="1.3"; sha256="0vfm6kmpmgsamda5p0sl771kbnsscan31l2chzssyw93kwmams7d"; depends=[BBmisc checkmate]; }; faisalconjoint = derive2 { name="faisalconjoint"; version="1.15"; sha256="08sb4za8qyadvigq2z7b0r44qk2lpahpnz9nv16xfjb1zhdkz5w3"; depends=[]; }; - falcon = derive2 { name="falcon"; version="0.1"; sha256="0yas8a8nqdp03s77k5z1xlyz59gapyx68pz0mf6i2snjwpgai59v"; depends=[]; }; - falsy = derive2 { name="falsy"; version="1.0.1"; sha256="1n2b2h7w7p3vib4vgb9vadd3c07dx12vz5gm8bawbdx7llh2pr24"; depends=[]; }; + fakeR = derive2 { name="fakeR"; version="1.0"; sha256="0f4ngnd8s34j1327zp3aqnsiw0gfxkp1i24ng20hrmfl13s1qmxp"; depends=[mvtnorm polycor pscl VGAM]; }; + falcon = derive2 { name="falcon"; version="0.2"; sha256="09hlvwwj3k3nhcsxijjvv8x74a9m200ayjjplrp4baxvczwyq341"; depends=[]; }; + falconx = derive2 { name="falconx"; version="0.1"; sha256="0sxsvx6nppys9sgmrxi79f709kfhafckd22nmn4ql7vf7p0z1fs7"; depends=[]; }; fame = derive2 { name="fame"; version="2.21"; sha256="15pcgc67qcg6qkgssbfissicic317v60jsybp86ryqvzqg70cqx3"; depends=[tis]; }; - fanc = derive2 { name="fanc"; version="1.25"; sha256="12isxkrrkph1jk88q3bnc27alixjgxjnfkcyx3rmc6s2hqw9vyiv"; depends=[Matrix]; }; - fancycut = derive2 { name="fancycut"; version="0.1.0"; sha256="1l81jk0jskawzy6q4li6awznq4rqs281b449zccfh0992qy45lk1"; depends=[]; }; + fanc = derive2 { name="fanc"; version="2.2"; sha256="1gdkxb2ay0lyldjpg4s2fbavjxl4q1bf9q438csqa4vzl5ywv2w8"; depends=[Matrix]; }; + fancycut = derive2 { name="fancycut"; version="0.1.1"; sha256="1vnxn5zl1j8209dyrwq3919hivab09f0jq4v9h7v0wlqk1hy5ich"; depends=[]; }; fanovaGraph = derive2 { name="fanovaGraph"; version="1.4.8"; sha256="1da7yskh2gn4arrrnalkl3izqyyrm0yf0il4v2izs7di7qlw3m6v"; depends=[DiceKriging igraph sensitivity]; }; fanplot = derive2 { name="fanplot"; version="3.4.1"; sha256="1xj1hdz3i9c9wdx7ryiqag69khh3544v4474ilxxiyahxg2r6m45"; depends=[]; }; faoutlier = derive2 { name="faoutlier"; version="0.6.1"; sha256="02a93jswrq10r09kawxzvdb795bs0sym0yllb30697f9gd7bvyqz"; depends=[lattice lavaan MASS mirt mvtnorm sem]; }; far = derive2 { name="far"; version="0.6-5"; sha256="18lj2mgnn9s59ypkr19zzv0sffwpx9mgk975xmpvw4kkl84dykis"; depends=[nlme]; }; faraway = derive2 { name="faraway"; version="1.0.7"; sha256="0lalf52y9rb4zdb4kpscwddb4zy0af7r5sm7lx8s9jaqykrwrfq6"; depends=[lme4 nlme]; }; + farff = derive2 { name="farff"; version="1.0"; sha256="1w3mi0vsw7mpqznaf3rnzf7va7ax07n5rrpm2hnjh0q25lsv55hk"; depends=[BBmisc checkmate readr stringi]; }; farsi = derive2 { name="farsi"; version="1.0"; sha256="0y14f86bccwjirdx33383wa605y7l7lr0w7ygvg8r7f7izkv7r3n"; depends=[]; }; fast = derive2 { name="fast"; version="0.64"; sha256="098rk6kszdx3szcwvwzcv7zlcd6qvqvbqch7q8ilas6vbki81ba4"; depends=[zoo]; }; fastAdaboost = derive2 { name="fastAdaboost"; version="1.0.0"; sha256="1pv1y6znvc37pgwk99v4r0hljhipq8v6r3r5cb5vhgyl0bfi8g38"; depends=[Rcpp rpart]; }; fastGHQuad = derive2 { name="fastGHQuad"; version="0.2"; sha256="0yv3wdyj7hs1gr3rq08k520v0ldmv5zzng709xjx2kchhwhmy8ah"; depends=[Rcpp]; }; - fastGraph = derive2 { name="fastGraph"; version="1.0"; sha256="05qbysc3arwg4hh0hxw84n4c004mndz8mgzbgsky4cb035bp99fa"; depends=[]; }; + fastGraph = derive2 { name="fastGraph"; version="1.1"; sha256="1vbi5yssnh8hcbmrq1r437vpvj8hqd3vc8wmcy0nbyvnmyjaxkvb"; depends=[]; }; fastHICA = derive2 { name="fastHICA"; version="1.0.2"; sha256="1h794ybbii0k7v3x0r1499zxdqa1i1dpi3i7idzqdrffnb5kmwlv"; depends=[energy fastICA]; }; + fastHorseshoe = derive2 { name="fastHorseshoe"; version="0.1.0"; sha256="1f9glz7zcarn4jdr6ssy41d2g6b6cqcry9mqchcq6zx576qn2irs"; depends=[lars Rcpp RcppArmadillo]; }; fastICA = derive2 { name="fastICA"; version="1.2-0"; sha256="0ykk78fsk5da2g16i4wji85bvji7nayjvkfp07hyaxq9d15jmf0r"; depends=[]; }; + fastJT = derive2 { name="fastJT"; version="1.0.2"; sha256="1k59qvc43adh07lyz1dznghqd6nbmnx5pciyg8da89yy3zw2dvgx"; depends=[Rcpp]; }; + fastLSU = derive2 { name="fastLSU"; version="0.1.0"; sha256="0clsd4kphlw62n7skqd0ralz3ymgxyvzn8bn06ljiwjqalzyhzhz"; depends=[]; }; fastM = derive2 { name="fastM"; version="0.0-2"; sha256="0q5dz47sqj6d4r3k6l6q34l5ajb8fjbf7xam75scp0mg3czswnfn"; depends=[Rcpp RcppArmadillo]; }; fastR = derive2 { name="fastR"; version="0.10.2"; sha256="0xh3pfcln8xp42zvq3kv03xf9kc5gqafnhdnq6r4rx7xhl9n5dw0"; depends=[lattice mosaic mosaicData]; }; - fastSOM = derive2 { name="fastSOM"; version="0.9"; sha256="03501d5289lrlr4qcgxciz160hqc6nhqb9ab266fr132fkbiv4id"; depends=[]; }; - fastclime = derive2 { name="fastclime"; version="1.2.5"; sha256="12k7bkq4gkkyh8lr2whmi73mzcy7wmfzwgi20kli7r4g39n3a1kv"; depends=[igraph lattice MASS Matrix]; }; - fastcluster = derive2 { name="fastcluster"; version="1.1.16"; sha256="0x2prrsnqi5iqx23ki6y2agndjq8058ph6s703i4avrqi1q1w1q8"; depends=[]; }; + fastSOM = derive2 { name="fastSOM"; version="1.0.0"; sha256="1x4kxys7mxlxz7cfbjig44za8m8p19xgzcs5y2wn9320sx8b0wc0"; depends=[]; }; + fastclime = derive2 { name="fastclime"; version="1.4.1"; sha256="0zcir8r11b2hxr9vvkmvxlzmhfcaxbr0wbjy86ysr912mp8fs9i3"; depends=[igraph lattice MASS Matrix]; }; + fastcluster = derive2 { name="fastcluster"; version="1.1.22"; sha256="006k9isra5biyavqwci61avladw19mhp6kmkjj3777rl1r4r8b9z"; depends=[]; }; + fastcmh = derive2 { name="fastcmh"; version="0.2.7"; sha256="0hib3r3pkfdi67bdy4pf1pw6869vq4b3pg1pq1zwpyy76nbnq9vl"; depends=[bindata Rcpp]; }; fastcox = derive2 { name="fastcox"; version="1.1.1"; sha256="1a5i0ragl0r6p29iamkn04igakiwyysykfbs2p6ybgy8pfdq69sv"; depends=[Matrix]; }; fastdigest = derive2 { name="fastdigest"; version="0.6-3"; sha256="02csl261v7nassi5119ygw6jglm8q6rssg7lgyxzj73mkyilm832"; depends=[]; }; - fastmatch = derive2 { name="fastmatch"; version="1.0-4"; sha256="16gfizfb1p7rjybrfm57nb6hdm30iirbppva8p8xf8pndz35fjbs"; depends=[]; }; + fasteraster = derive2 { name="fasteraster"; version="1.0.4"; sha256="0xxfwgzf6xbk4sajchaz7wjppg6cs1vkb00wiwsqmjm2yr48yp0m"; depends=[Rcpp]; }; + fastmatch = derive2 { name="fastmatch"; version="1.1-0"; sha256="0z80jxkygmzn11sq0c2iz357s9bpki548lg926g85gldhfj1md90"; depends=[]; }; + fastnet = derive2 { name="fastnet"; version="0.1.1"; sha256="1rqr9cc5xnz3pqjhakp52xk0m8c8dld50vm29blr8s6gw0spp7j8"; depends=[doParallel foreach igraph]; }; fastpseudo = derive2 { name="fastpseudo"; version="0.1"; sha256="0paag4pjh3gs270j663bsl65sfrq43gk2zzqmalr03fmcckp6aaj"; depends=[]; }; - fasttime = derive2 { name="fasttime"; version="1.0-1"; sha256="1yfxj7k781ks4bx45bmmg1zkfzz7s027h393a0l5h6i5g1z7b81d"; depends=[]; }; + fasttime = derive2 { name="fasttime"; version="1.0-2"; sha256="11i4c0zrkvvqsax0az1fvmc0jxfsjyx28434k1qgzhj9g2j9m9cf"; depends=[]; }; fat2Lpoly = derive2 { name="fat2Lpoly"; version="1.2.2"; sha256="1xqr4azc5gsr7kcm8qzwjpjy72w1b111i61wbm35vns9r38a6cxz"; depends=[kinship2 multgee]; }; + fauxpas = derive2 { name="fauxpas"; version="0.1.0"; sha256="1mi19zrgkx25g8j1f948n0ps27dn0rr2jqnhf15w73lpsjbwvi54"; depends=[httpcode R6 whisker]; }; favnums = derive2 { name="favnums"; version="1.0.0"; sha256="0siax7gjr25lpf1li3hawx6nviggs68c0lap2d9i38azlhvj891w"; depends=[]; }; + fbRads = derive2 { name="fbRads"; version="0.2"; sha256="1a65gfvizzm6psspcvlhkxligdf9j1whrgzkg7ww520lk3z8lnnd"; depends=[bit64 data_table digest futile_logger jsonlite plyr RCurl]; }; fbRanks = derive2 { name="fbRanks"; version="2.0"; sha256="17kbmdpgqkj2n951c6mdsrgfga6kiij1gqiw1wpi0q3fq4dlfrzx"; depends=[igraph stringr]; }; - fbati = derive2 { name="fbati"; version="1.0-1"; sha256="1ia67dg9b61kc14mjg7065v0c6n6agdp8cjdviasyzga00wzsyxj"; depends=[fgui pbatR rootSolve]; }; - fbroc = derive2 { name="fbroc"; version="0.3.1"; sha256="0a03b1cawi57qc1hjll4ja23hdxng7a633v5i29sdfwwggl1x6f8"; depends=[ggplot2 Rcpp]; }; + fbar = derive2 { name="fbar"; version="0.1.23"; sha256="1s23wiwyi9fj99zz8m8lhfz91cr8cnl92gb5wl2im691jvhvsr3s"; depends=[assertthat dplyr magrittr Matrix purrr ROI stringr tibble tidyr]; }; + fbati = derive2 { name="fbati"; version="1.0-1.1"; sha256="18k8a1m2znzzwmm25dbqnqzwbjxqz4rbjaw3z9affky7lzqgbg6l"; depends=[fgui pbatR rootSolve]; }; + fbroc = derive2 { name="fbroc"; version="0.4.0"; sha256="0bxi027iqqn50mn5nrlgx3z4qdlfkrq88s0dqyaxdl8rsrwp3d2w"; depends=[ggplot2 Rcpp]; }; fcd = derive2 { name="fcd"; version="0.1"; sha256="091wbf5iskcgyr7jv58wrf590qijb0qcpninmvm3xrwxi34r37xr"; depends=[combinat glmnet MASS]; }; fclust = derive2 { name="fclust"; version="1.1.2"; sha256="08gi7w74215r44qbysg233s5n8r905b66gsi4i66xf5r7zgaqsm0"; depends=[]; }; - fcros = derive2 { name="fcros"; version="1.4.1"; sha256="1q0mra1rkksbvavbrh4fp6knmmzwxgkwq9pikafp2m95ll9n4xii"; depends=[]; }; + fcros = derive2 { name="fcros"; version="1.5.2"; sha256="0ggg8jyzdsy5ihhs4hqjjj5v0sh1ln4n7380b1z1rafjfr9j2hwv"; depends=[]; }; fda = derive2 { name="fda"; version="2.4.4"; sha256="05rvrp29ip1wrk2wly06wdry2a2riynkx677nx5lg240lz12d6yw"; depends=[Matrix]; }; - fda_usc = derive2 { name="fda.usc"; version="1.2.2"; sha256="0xmfx40ibpb29rq7w4wrwhk5v16dj690qh7lv0gjigvnah1x8ih8"; depends=[fda MASS mgcv rpart]; }; + fda_usc = derive2 { name="fda.usc"; version="1.3.0"; sha256="1ask7g6mqwx8r1hd9vxzdl96z0gyqprswjpfcl7l5l3611m7mzdm"; depends=[fda MASS mgcv nlme rpart]; }; fdaMixed = derive2 { name="fdaMixed"; version="0.4"; sha256="15m13v71kqxd9gqiymgfkq0dvcpzp05576m8zkg08m0k067ga9bd"; depends=[Formula Rcpp RcppArmadillo]; }; - fdaPDE = derive2 { name="fdaPDE"; version="0.1-2"; sha256="1bbrpricxrsixc0na4bgxclrzw6px0n2k05v1rbvbhsf2v1985jj"; depends=[RcppEigen rgl]; }; + fdaPDE = derive2 { name="fdaPDE"; version="0.1-4"; sha256="0n72x5h00n17yxjniim2qxz2phy1srk04dn6ivvc58k3x252fzkh"; depends=[RcppEigen rgl]; }; fdakma = derive2 { name="fdakma"; version="1.2.1"; sha256="0j9qgblrl7v4586dd6v0hjicli6jh8pkk5lzn8afpl75xfs24six"; depends=[]; }; - fdapace = derive2 { name="fdapace"; version="0.1.1"; sha256="102rhycn0yqkhkai1gdjc7jcf14im7hcvwa8xprffx5pkjigrydg"; depends=[Hmisc Matrix numDeriv plot3D pracma Rcpp RcppEigen]; }; - fdasrvf = derive2 { name="fdasrvf"; version="1.6.0"; sha256="1gzm862nbadrqamfyfdkynxdprrapkvc5n9jvp2vi6xxr6mm35ck"; depends=[doParallel fields foreach matrixcalc mvtnorm Rcpp]; }; + fdapace = derive2 { name="fdapace"; version="0.3.0"; sha256="1r4s20spsiags7z8hyvbvi9gxjxs4v8hfnrqya872shagk9iadyl"; depends=[Hmisc Matrix numDeriv pracma Rcpp RcppEigen]; }; + fdasrvf = derive2 { name="fdasrvf"; version="1.7.0"; sha256="0701ishhbxqjapin0c780m92pl02x4xvfvnsmydn0s6fqbxvxb1v"; depends=[coda doParallel fields foreach matrixcalc mvtnorm Rcpp RcppArmadillo]; }; fdatest = derive2 { name="fdatest"; version="2.1"; sha256="0zdnmssir5jz2kbfz4f4xshjfv4pivqx7cbh2arlx6ypkjrjws8n"; depends=[fda]; }; + fdcov = derive2 { name="fdcov"; version="1.0.0"; sha256="1m6yk6ngsxrz5mywp3vqhfjpkskrzgdyvqw7j8k2jgy4l0x04g5g"; depends=[corrplot matlab]; }; + fdq = derive2 { name="fdq"; version="0.2"; sha256="1iyplxm6niywfhmdnliy9nvvax1w6sijar8gpsj853cdfvn6kz5m"; depends=[data_table Fgmutils ggplot2 plyr randomcoloR sqldf]; }; fdrDiscreteNull = derive2 { name="fdrDiscreteNull"; version="1.0"; sha256="1388a9hjbgblmhx5f3ddk16kigzsik9bvw179d1szk33kadfq2vp"; depends=[edgeR MCMCpack]; }; - fdrci = derive2 { name="fdrci"; version="2.0"; sha256="0smyl9phl02wghimawvff3h267w3h213jbqpka155i6cfzig9qjy"; depends=[]; }; + fdrci = derive2 { name="fdrci"; version="2.1"; sha256="1sgrsmlz7sbr1maw3qnpzqz3z75fh5nyiibpsq8j0y12xac8d0x3"; depends=[]; }; fdrtool = derive2 { name="fdrtool"; version="1.2.15"; sha256="1h46frlk7d9f4qx0bg6p55nrm9wwwz2sv6d1nz7061wdfsm69yb5"; depends=[]; }; - fds = derive2 { name="fds"; version="1.7"; sha256="164f2cbywph7kyn712lfq4d86v22j4y3fg5i9zyz956hipqv0qvw"; depends=[RCurl]; }; + fds = derive2 { name="fds"; version="1.7"; sha256="164f2cbywph7kyn712lfq4d86v22j4y3fg5i9zyz956hipqv0qvw"; depends=[rainbow RCurl]; }; fdth = derive2 { name="fdth"; version="1.2-1"; sha256="0rr9p2rns5ws111iqcicrlpcv47fkbxf161yxkkzfs2l3f1kgw14"; depends=[]; }; + feather = derive2 { name="feather"; version="0.3.1"; sha256="1q6dbkfnkpnabq8lb6bm9ma44cfcghx2lm23pyk3vg7943wrn1pi"; depends=[hms Rcpp tibble]; }; feature = derive2 { name="feature"; version="1.2.13"; sha256="07hkw0bv38naj2hdsx4xxrm2dngi6w3rbvgr7s50bjic8hlgy1ra"; depends=[ks misc3d rgl]; }; features = derive2 { name="features"; version="2015.12-1"; sha256="0rd8r1dxzddb6718hcm8ck7531c9wdrjfy8n67875bbxgzcvds61"; depends=[lokern]; }; - fechner = derive2 { name="fechner"; version="1.0-2"; sha256="0yhiqr0wlka3wq0nhwy9n02ax3x5b0y803iadbsr3xb54pxbfbqd"; depends=[]; }; + fecR = derive2 { name="fecR"; version="0.0.1"; sha256="0w31hr2j80ppzwgpnbalkgrxz7ijfr43yw7xk9rjkl8gw2nq4kg6"; depends=[lubridate plyr]; }; + fechner = derive2 { name="fechner"; version="1.0-3"; sha256="0bassigcipwlr2g8cdjh8jyhmb903k3hla9gnigcbz7qwzlfwa86"; depends=[]; }; federalregister = derive2 { name="federalregister"; version="0.2.0"; sha256="0qr8nd3ylnwcv1wxspw5i7ray5sh30zr648spg0lpqq8dp2b8p7b"; depends=[curl httr jsonlite]; }; + feedeR = derive2 { name="feedeR"; version="0.0.7"; sha256="08mnfi96qkr1fj53ywqmya957swcwrfd3hqk0qaf2ni96sxxnp98"; depends=[digest dplyr lubridate RCurl XML]; }; fermicatsR = derive2 { name="fermicatsR"; version="1.4"; sha256="1587f67fypj22rdi1319zq765lcc9z518bzl1jr4lz6c8lrzfm9i"; depends=[]; }; ff = derive2 { name="ff"; version="2.2-13"; sha256="1nvd6kx46xzyc99a44mgynd94pvd2h495m5a7b1g67k5w2phiywb"; depends=[bit]; }; ffbase = derive2 { name="ffbase"; version="0.12.3"; sha256="1nz97bndxxkzp8rq6va8ff5ky9vkaib1jybm6j852awwb3n9had5"; depends=[bit fastmatch ff]; }; ffmanova = derive2 { name="ffmanova"; version="0.2-2"; sha256="0sw8br73mx552m4b5zi4qgjcrwxflmgsnvs4mlnxh8g2gaf5bx4j"; depends=[]; }; + ffstream = derive2 { name="ffstream"; version="0.1.5"; sha256="1q07b1wdyhbvn3784lwwz3jk591cz1rv1jnf36q1piscsb3v7ayk"; depends=[Rcpp]; }; fftw = derive2 { name="fftw"; version="1.0-3"; sha256="01nncrf2p0yq49lhd5aq4hvhp87f25r0x7siqnaldv5zq24krl30"; depends=[]; }; fftwtools = derive2 { name="fftwtools"; version="0.9-7"; sha256="1pd6ri9qh8rj5dahznl38l6haa1x6f2w91mxi83lic76lpddnxly"; depends=[]; }; fgac = derive2 { name="fgac"; version="0.6-1"; sha256="0paddf5a4w0g2i0ay7my0bppwh534d8ghy6csfxl5jj034xjgwkk"; depends=[]; }; @@ -4185,70 +5195,106 @@ in with self; { fgpt = derive2 { name="fgpt"; version="2.3"; sha256="1d0qzsn4b68jhk07k97iv765jpmzzh1gwqpid0r76vg4cwqfs3n7"; depends=[]; }; fgui = derive2 { name="fgui"; version="1.0-5"; sha256="0gzwxzvf2y9p5rlfk862d7l1dm2sdwjhjpcb8p494cj4g1xshazg"; depends=[]; }; fheatmap = derive2 { name="fheatmap"; version="1.0.1"; sha256="1ir666zwlrw00c8pzm7np91n8qajc4w38pkmn2r12zpmcivqhvpk"; depends=[gdata ggplot2 gplots RColorBrewer reshape2]; }; - fields = derive2 { name="fields"; version="8.3-6"; sha256="0gnjwzi6rbvlhk0ragq12f0wzva25ncfy4llipmfl4zxz91px4dk"; depends=[maps spam]; }; - fifer = derive2 { name="fifer"; version="1.0"; sha256="0vbkks6y6pacgpiixm10fbfa34lmk5r9kwd30lfjf0g7r51fhvv9"; depends=[MASS xtable]; }; + fields = derive2 { name="fields"; version="8.10"; sha256="1vr0iil04jcqgsm2s3cgcldg8p4jc6avwwp0zrsdixbr9rgqcz20"; depends=[maps spam]; }; + fiery = derive2 { name="fiery"; version="0.2.2"; sha256="1dinlrxal5rm16xvfripj8l3q15yfxkgj2qn2hihf03k0pj50lb2"; depends=[assertthat future httpuv R6 stringi uuid]; }; + fifer = derive2 { name="fifer"; version="1.1"; sha256="1gcv8ns4c1y3pjmixdm16raa5h6jqmc3i4m37ahj97l720j1f2ya"; depends=[fields Hmisc MASS party plotrix randomForest randomForestSRC rpart xtable]; }; + fiftystater = derive2 { name="fiftystater"; version="1.0.1"; sha256="1nri9vsqif03xrmm3g5llasqm49hj169mgv046f2l0mh9vp0fqpc"; depends=[]; }; filehash = derive2 { name="filehash"; version="2.3"; sha256="1nvf7qbnn6vjz68303xdm190iq0nwmmghyydcb4amx1ckbgric33"; depends=[]; }; filehashSQLite = derive2 { name="filehashSQLite"; version="0.2-4"; sha256="1higvkmj4wvnwpvayqinzaygiksij20d77dx118q0gffsczadamh"; depends=[DBI filehash RSQLite]; }; - filematrix = derive2 { name="filematrix"; version="1.0"; sha256="17rkf9izhpz3nljv9s56fannd4v7dzsgk6igl7s9mkzmzn4fyp0g"; depends=[]; }; - filenamer = derive2 { name="filenamer"; version="0.2"; sha256="0f2xvqp75b8v59707z26y746vvag3f2mcykafqp5cy8cqrf7x61j"; depends=[]; }; + filematrix = derive2 { name="filematrix"; version="1.1.0"; sha256="1z1nlpmckmh96zfc17gkgagagzz84ih6sjy4b8vfv1nzfipprsfy"; depends=[RSQLite]; }; + filenamer = derive2 { name="filenamer"; version="0.2.1"; sha256="0xahzjgwfpyln6i2szr985csw11w8wwk644sgclwly9l2yqzsi3i"; depends=[]; }; + fileplyr = derive2 { name="fileplyr"; version="0.2.0"; sha256="15rxls0njd6j2vxdahf4fx2nxmsa3rc41812v3wlaqas99naaxxr"; depends=[assertthat datadr tibble]; }; + files = derive2 { name="files"; version="0.0.1"; sha256="1vhhawqjjbb6fadkn3l10mvz63w3vmcwvl93fk0q9mhkifzlj9kc"; depends=[]; }; financial = derive2 { name="financial"; version="0.2"; sha256="1v6jgs3rq57byin5mynslfjk3zrx91qz36558nn17mv6z0qsf10v"; depends=[]; }; + finch = derive2 { name="finch"; version="0.1.0"; sha256="0pqli6l049s9pdk0gphch1pw8i0f1fr3562akms1x7hvdkn9c0i9"; depends=[data_table digest EML plyr rappdirs xml2]; }; findpython = derive2 { name="findpython"; version="1.0.1"; sha256="0fa01znc9cckj4ay4zmwmssm2lkhmsw6h07y1pwgd6z1b2pj7bns"; depends=[]; }; - fingerprint = derive2 { name="fingerprint"; version="3.5.2"; sha256="042aycxs00rglqh2y27bjlwkk6z312gavli7g8xvqfx1lisijrjk"; depends=[]; }; - finiteruinprob = derive2 { name="finiteruinprob"; version="0.4"; sha256="0wcllbqkryll3v3fjb6k210pcgkskzrpa78gg8nda0jvkij11zb7"; depends=[numDeriv sdprisk]; }; - fishMod = derive2 { name="fishMod"; version="0.25"; sha256="0mg1bziz2ia406m4ilc7hw1bghrgdibm537hnlf9ffhfayjc4kid"; depends=[]; }; + findviews = derive2 { name="findviews"; version="0.1.3"; sha256="1l1yhw5hvrn0rpkdsch8m69d2q5284jwccvv7r4ia4m0iqjfipj7"; depends=[ggplot2 gridExtra scales shiny]; }; + fingerprint = derive2 { name="fingerprint"; version="3.5.4"; sha256="0raxsyni8kbq7q2sfkp4bx6mh8wdk9mxplzi4fbqcf78cxk9bla7"; depends=[]; }; + finiteruinprob = derive2 { name="finiteruinprob"; version="0.6"; sha256="0z4l0crymh58chxniqq70fqmvi6f5jkgvz72vbc7s3l9lrrapgr3"; depends=[numDeriv sdprisk]; }; + finreportr = derive2 { name="finreportr"; version="1.0.1"; sha256="1mansiyl4p4zqc1h2aw9zgzb3fy4mppgmshdm8mcf4nbm340g4vk"; depends=[curl dplyr httr rvest XBRL xml2]; }; + fishMod = derive2 { name="fishMod"; version="0.29"; sha256="0pbs4z27vwa3c42xdw3mr6l2i581bgvn2pk52kawbcnnlsff92ar"; depends=[]; }; fisheyeR = derive2 { name="fisheyeR"; version="0.9"; sha256="1w6va7gakqq2q8hsvdszpn8s2ysdfc648bk5p5v3wbl5s403bci8"; depends=[tkrplot]; }; - fishmethods = derive2 { name="fishmethods"; version="1.9-0"; sha256="118w9zacrrvx0qgr4626kkw2v1kgmb644a518j9w4fqhvfiwd4mk"; depends=[boot bootstrap lme4 MASS]; }; + fishkirkko2015 = derive2 { name="fishkirkko2015"; version="1.0.0"; sha256="1s8vsf604rc6qk0gahn61p3q8p9dhsbq14wsmrin7icq2xgl3y81"; depends=[]; }; + fishmethods = derive2 { name="fishmethods"; version="1.10-0"; sha256="1sr5f1yg55qirk9afamb7nq142y7l5j93c04a6xyhmkrgf5kcs0p"; depends=[boot bootstrap lme4 MASS]; }; fishmove = derive2 { name="fishmove"; version="0.3-3"; sha256="1knbv087cg0czjcgdbrlpg69pp1dxb57b7ak5j1mcy7ay3a41a9h"; depends=[boot ggplot2 MASS plyr]; }; fit_models = derive2 { name="fit.models"; version="0.5-10"; sha256="06pj26dbnq6mf9wxinvjzwyn36656f66a4bmky36r7fzi92gf3d8"; depends=[lattice]; }; fit4NM = derive2 { name="fit4NM"; version="3.3.3"; sha256="0k2194521yby6xxi77bpjp6ywz8kpnzws217m7n0hw6xwz5mqj1g"; depends=[cairoDevice gWidgets gWidgetsRGtk2 RGtk2 tkrplot]; }; fitDRC = derive2 { name="fitDRC"; version="1.1"; sha256="1f6avw8ia9ks17zdagpmh6yvcmi53h5cvm0wwv9hsb92x5zfhxn9"; depends=[]; }; fitTetra = derive2 { name="fitTetra"; version="1.0"; sha256="0ia6wk4gicpmn6kclsd28p7v1npwfv2blagiz0cxzwfw3njv103g"; depends=[]; }; - fitbitScraper = derive2 { name="fitbitScraper"; version="0.1.5"; sha256="0qdsk4zb5xrqpaba2j76iarh5jdpij4vl97b3z7v3yijx7w4fsgl"; depends=[httr RJSONIO stringr]; }; - fitdistrplus = derive2 { name="fitdistrplus"; version="1.0-6"; sha256="17ip3qh07jgcklacv89r1g8a27cp7xpk4f61ps5v9affsn1vjmcg"; depends=[MASS survival]; }; - flacco = derive2 { name="flacco"; version="1.2"; sha256="0lwy9cl8xd11vr18hhyyq6kxcgsdqp7mvmvizw2rq2fkyw3k5nfa"; depends=[BBmisc checkmate]; }; - flam = derive2 { name="flam"; version="3.0"; sha256="0c3j382sa7szqrpd0j8vcg19p6yn18jphd55cbvl0g6z0z76y53p"; depends=[MASS Rcpp]; }; + fitbitScraper = derive2 { name="fitbitScraper"; version="0.1.7"; sha256="1bam6hj3cqi5bw1zx4gkl62lzdy40pr3g7f6v36bwkczccasxrwr"; depends=[httr jsonlite stringr]; }; + fitcoach = derive2 { name="fitcoach"; version="1.0"; sha256="1nnd7g093qjlbyrdai78gpbs0xjqlfdjn1v786v7966rzp83xfkg"; depends=[caret dplyr gbm ggplot2 httr jsonlite plyr R6 reshape2]; }; + fitdc = derive2 { name="fitdc"; version="0.0.1"; sha256="1b1abib7jkl7a6r686r53qjw2ywb9q2h67is8691kkaqxpawg30p"; depends=[]; }; + fitdistrplus = derive2 { name="fitdistrplus"; version="1.0-8"; sha256="0h6b5zp5z2g87vz1zv4k7b0rl8rh17vs2ca0i2v583v0b4si7hz4"; depends=[MASS survival]; }; + fitplc = derive2 { name="fitplc"; version="1.1-3"; sha256="1l7s5adzindq24slbygmkyk17jh37hgv1pwa7bphsb997k5qk4fm"; depends=[car nlme]; }; + fitur = derive2 { name="fitur"; version="0.1.0"; sha256="1k4c6n36s324akscm0mkyw68hxmh52kh0l01kyw18mxlbr3d0rhq"; depends=[fitdistrplus]; }; + fivethirtyeight = derive2 { name="fivethirtyeight"; version="0.1.0"; sha256="0fcc8rq745nsghp27dk0lgih90y4zx8hrzcvsn6ih786yv7qxhvl"; depends=[]; }; + fixedTimeEvents = derive2 { name="fixedTimeEvents"; version="1.0"; sha256="0z7ji8yzp4pj76ad64l7ivknkbi82ijx6abd3a18wicqhrh433sj"; depends=[]; }; + fizzbuzzR = derive2 { name="fizzbuzzR"; version="0.1.1"; sha256="119gbi9y4n8r52hk9vj7zf795dv9xnk7lnngljjcd7ydnhygwd4h"; depends=[]; }; + flacco = derive2 { name="flacco"; version="1.3"; sha256="1kqr8a311d2kh4rgy176813vcai63qkz4x7snynj82jgmqfz2llq"; depends=[BBmisc checkmate]; }; + flam = derive2 { name="flam"; version="3.1"; sha256="12dkxisi56fg5720mh58jqrjvkqllqgzynafd44xalswkk4ahaak"; depends=[MASS Rcpp]; }; + flan = derive2 { name="flan"; version="0.3"; sha256="1ayba6gifxmvwn5mfh0zqgl1hbp5d9spl1bxc8w8zxvih4khw7w4"; depends=[lbfgsb3 Rcpp]; }; flare = derive2 { name="flare"; version="1.5.0"; sha256="03bq40lwwq49vvbarf37y7c3smm29mxqfxsc66gkg8l5pak4l38i"; depends=[igraph lattice MASS Matrix]; }; + flars = derive2 { name="flars"; version="1.0"; sha256="06qma1ar1nj7n6g9alk1qydm5bkj6lsjx0pqkikxpb41d91civqk"; depends=[fda MASS Matrix Rcpp RcppEigen]; }; flashClust = derive2 { name="flashClust"; version="1.01-2"; sha256="0l4lpz451ll7f7lfxmb7ds24ppzhfg1c3ypvydglcc35p2dq99s8"; depends=[]; }; - flexCWM = derive2 { name="flexCWM"; version="1.5"; sha256="1q6nkw6al56wc53sj719c94iv20a9a82pq4s62jnb2flq1pwdaml"; depends=[adehabitat ellipse Flury MASS mclust mixture mnormt numDeriv statmod]; }; + flexCWM = derive2 { name="flexCWM"; version="1.7"; sha256="0kgvj3l4cscr1p3305mnz42km5i8280wrvxp317dif3pvq7iigi4"; depends=[ContaminatedMixt mclust numDeriv statmod]; }; flexPM = derive2 { name="flexPM"; version="2.0"; sha256="0h3qs9w9pc2nc24q1diz7j3s93y40ijpmgq2l0xg9mzcgjz9kz8c"; depends=[survival]; }; flexclust = derive2 { name="flexclust"; version="1.3-4"; sha256="1x9gyg69kb3wn02w885kl6hcwpf2ki66gzfayvc83jisrwxvdfvv"; depends=[lattice modeltools]; }; + flexdashboard = derive2 { name="flexdashboard"; version="0.4"; sha256="0zb0k4mph4d9rqq655dj8mma51r77v716xrpwj4ypgs66ni08c1l"; depends=[htmltools htmlwidgets jsonlite knitr rmarkdown shiny]; }; flexmix = derive2 { name="flexmix"; version="2.3-13"; sha256="1i205yw3kkxs27gqcs6zx0c2mh16p332a2p06wq6fdzb20bazg3z"; depends=[lattice modeltools nnet]; }; - flexsurv = derive2 { name="flexsurv"; version="0.7"; sha256="1mwqbp89mhmplyii7if5jmlv8593i48pv5i2l15javh2p0rqdzz6"; depends=[deSolve mstate muhaz mvtnorm quadprog survival]; }; + flexrsurv = derive2 { name="flexrsurv"; version="1.3.3"; sha256="0dkm2fdr76k2l6b02r9gxqm585x243cddvj14rw1gck570z6grnf"; depends=[Epi matrixcalc orthogonalsplinebasis survival]; }; + flexsurv = derive2 { name="flexsurv"; version="1.0.0"; sha256="0lzcbfwxwvh7dm743mvmkz3d35z6gf0az4mn4x0sbv318j2bg0hr"; depends=[deSolve mstate muhaz mvtnorm quadprog survival]; }; + flifo = derive2 { name="flifo"; version="0.1.4"; sha256="1yilfnblarimc8mlvvwsgib5sxcfgvgsvgpyzddxb39g6fb7lffs"; depends=[bazar pryr]; }; flip = derive2 { name="flip"; version="2.4.3"; sha256="04zf2gnk5w57gxnlnh26pn1ir1wfrzxhfhchr33ghk7prhc7k4b8"; depends=[cherry e1071 Rcpp RcppArmadillo someMTP]; }; - flora = derive2 { name="flora"; version="0.2.7"; sha256="0kr8gx9ckklvfifbchiyzxvby0aww7gwvh4bfd0fh6svdrin6dly"; depends=[dplyr httr shiny]; }; + flippant = derive2 { name="flippant"; version="1.1.0"; sha256="06aj90y7c33c1q0nw1c67vr1pfmp9fw78az6ivrbq110f2k1m12w"; depends=[assertive_files assertive_numbers assertive_properties assertive_strings assertive_types data_table ggplot2 magrittr minpack_lm plyr RcppRoll stringi withr wmtsa]; }; + flock = derive2 { name="flock"; version="0.7"; sha256="1zg93p74icj4bhxnmnssj2xp6vw4yaksyavq03497v33xfpdxss7"; depends=[Rcpp]; }; + flood = derive2 { name="flood"; version="0.1.1"; sha256="0nlmjh2l7dij1aqd70hhj0m550knlin3am14azqkx4pacs1kir3p"; depends=[copula evd magrittr TLMoments]; }; + flora = derive2 { name="flora"; version="0.2.8"; sha256="1asggrfp7i6z9p7lp1ab9i9i6xzz0qafxs03irpqig4pqw0qwm7d"; depends=[dplyr httr jsonlite]; }; flowDiv = derive2 { name="flowDiv"; version="1.0"; sha256="1xgg73gbhysss82faqxn25l494sjbi3j0ls0dj6znzll8bhlrkb1"; depends=[flowCore flowWorkspace vegan]; }; flower = derive2 { name="flower"; version="1.0"; sha256="1h2fvpjrvpbyrqb8hd51sslr1ibpwa7h9fiqy9anvf2yim5j11yq"; depends=[]; }; flowfield = derive2 { name="flowfield"; version="1.0"; sha256="1cx3i0w3xq781mmms4x20fshlf1i9bwxw9bxx562crix3fq3m50j"; depends=[]; }; - flowr = derive2 { name="flowr"; version="0.9.9.5"; sha256="02ilcx5kswk7c1f1sd2g5av0m0amzl3g9yhqrl0khpiighsybciy"; depends=[diagram params whisker]; }; - flows = derive2 { name="flows"; version="1.1"; sha256="05h4s0g9vcjwli96zlajkpi61bvdxcnzy7lcskn8z7qss3kl8wi8"; depends=[igraph reshape2 sp]; }; + flowr = derive2 { name="flowr"; version="0.9.10"; sha256="18mjshfg3827b26b8nz52pl04ph7n887vw0ym5fybjm8gy5wwpdg"; depends=[diagram params whisker]; }; + flows = derive2 { name="flows"; version="1.1.1"; sha256="0l152p17plkrbnrlis8rfr9ij406agckdxvnjsciilv6qwcync29"; depends=[igraph reshape2 sp]; }; flsa = derive2 { name="flsa"; version="1.05"; sha256="07z2b1pnpnimgbzkjgjl2b074pl9mml7nac2p8qvdgv7aj070cmh"; depends=[]; }; flux = derive2 { name="flux"; version="0.3-0"; sha256="0pc9cab2pwrfl0fnz29wp7a398r49hvbi50jp8i2fk2rfvck21a7"; depends=[caTools]; }; - fma = derive2 { name="fma"; version="2.01"; sha256="1j5mvhbrdnkyj4svibpahnz7d4221nkhja5b7fnh68mbmil607fc"; depends=[forecast tseries]; }; - fmri = derive2 { name="fmri"; version="1.5-1"; sha256="0dla5w8x4njw2njryb35nqh4r31wdps9bl5wzab2grzl546wwmwm"; depends=[]; }; + fma = derive2 { name="fma"; version="2.3"; sha256="1z7shh9ng3q7ax22cwg86y79jzz5gbchdny2rppzzm0lkvvyy5pm"; depends=[forecast]; }; + fmbasics = derive2 { name="fmbasics"; version="0.1.0"; sha256="1nf3s59qjiylrr293dzrnrza6q7xywsgczyb1d07x85bb9gcxkih"; depends=[assertthat fmdates lubridate]; }; + fmdates = derive2 { name="fmdates"; version="0.1.2"; sha256="0j79a6dc9bxhfxki77fmvn36x73kgpqym1m46pj74jzyz32sb05h"; depends=[assertthat lubridate]; }; + fmri = derive2 { name="fmri"; version="1.7-2"; sha256="1ifp0fkmr0bj5vkg9vh0lk74f04fk0zc90vknmjmxd2hbdb5kh4r"; depends=[awsMethods metafor nlme]; }; + fmrs = derive2 { name="fmrs"; version="1.0-9"; sha256="1x9g67701kcnz3p97iynr74sn0mfpxpp16mv1l4zxlhhfn2v5lwx"; depends=[survival]; }; fmsb = derive2 { name="fmsb"; version="0.5.2"; sha256="0y3sx4lmn05rwaywlyckl3l8ds21p6zjbbw47zqlh0kgcbiv1q1a"; depends=[]; }; fmt = derive2 { name="fmt"; version="1.0"; sha256="13gsywnyvf9zy5n644g2xyd60f92w2dp7vil2dncjvjcqsib22a0"; depends=[]; }; foba = derive2 { name="foba"; version="0.1"; sha256="1af8whgl66v0vwzdf03b6141k3dysdc0svymlgifcga5gqkwzsl0"; depends=[]; }; + foghorn = derive2 { name="foghorn"; version="0.4.2"; sha256="0wskaky1jb9yqz0ds1hjrvdfdxdsmbfx730257z9xsyip1fwlic4"; depends=[clisymbols crayon curl dplyr httr lazyeval magrittr rvest tibble tidyr xml2]; }; + fontBitstreamVera = derive2 { name="fontBitstreamVera"; version="0.1.1"; sha256="0nipdlmhjv1wr3aidcl97nk6mppdkd65krgwqnhdsnv0jpfv761j"; depends=[]; }; + fontLiberation = derive2 { name="fontLiberation"; version="0.1.0"; sha256="1w1rl0g4ayyp8lwppmz9yzj9cizg7i50g07216jkm1q5w0is9pmc"; depends=[]; }; fontcm = derive2 { name="fontcm"; version="1.1"; sha256="1z6b4qdgj5vhvjqj90sm1hp0fffi1vxzvq71p0flxybzyb7d15la"; depends=[]; }; + fontquiver = derive2 { name="fontquiver"; version="0.2.1"; sha256="0qv3i9hch7cygl9983s3w68wfh5qvym2jkm52pp06p6mq8a1i1wm"; depends=[fontBitstreamVera fontLiberation]; }; foodweb = derive2 { name="foodweb"; version="1-0"; sha256="1zm2a87g9bkpz90j9lax28s5hq1w7ia28qqb6vnvr1d7a47g9zi9"; depends=[rgl]; }; forams = derive2 { name="forams"; version="2.0-5"; sha256="1fh3m9896ksv1h7b027yb955bzyv70yafhqvn5crkzalzk3jpb0s"; depends=[vegan]; }; + forcats = derive2 { name="forcats"; version="0.2.0"; sha256="1mvwkynvvgz2vi8dyz11x7xrp53kadjawjcja34hwk1d89qf7g5m"; depends=[magrittr tibble]; }; foreach = derive2 { name="foreach"; version="1.4.3"; sha256="10aqsd3rxz03s1qdb6gsb1cj89mj4vmh491zfpin4skj1xvkzw0y"; depends=[codetools iterators]; }; - forecTheta = derive2 { name="forecTheta"; version="2.1"; sha256="04kmhf0f27v6fajly81xyp8lrrvz1l69kx9gdxgdki8vm0zcnx2z"; depends=[forecast]; }; - forecast = derive2 { name="forecast"; version="6.2"; sha256="0j4agcw11dzlwy90qqr2is0rhws73hphqsjfb4glw0min5vsw00v"; depends=[colorspace fracdiff nnet Rcpp RcppArmadillo timeDate tseries zoo]; }; + forecTheta = derive2 { name="forecTheta"; version="2.2"; sha256="1a7ip3czm8k82kb8dx95m8q47kjhifdj51gzavd1zj9ni3vwbhfn"; depends=[forecast tseries]; }; + forecast = derive2 { name="forecast"; version="7.3"; sha256="02zckbxwb4b83kadk7nd5ybxanswq1ws4z5xzdyiss626pgzljp1"; depends=[colorspace fracdiff ggplot2 nnet Rcpp RcppArmadillo timeDate tseries zoo]; }; + forecastHybrid = derive2 { name="forecastHybrid"; version="0.3.0"; sha256="1j5mfmdi6ky6ssai3lv2x7n09i93hpl5r1068qlm32mijf4yylbs"; depends=[forecast ggplot2 reshape2]; }; + forecastSNSTS = derive2 { name="forecastSNSTS"; version="1.1-1"; sha256="1rmar6qfiw9hszwqp988csvwsq8q72d39a2xmr9yq36llnbg6i5p"; depends=[Rcpp]; }; forega = derive2 { name="forega"; version="1.0"; sha256="0xf9almfikfkxq8mm09lzrvav2v5cg0avpz99i6h5i9qliix1q6r"; depends=[forecast Rcpp robfilter]; }; - foreign = derive2 { name="foreign"; version="0.8-66"; sha256="19278jm85728zb20800w6hq9q8jy8ywdn81mgmlnxkmrr9giwh6p"; depends=[]; }; + foreign = derive2 { name="foreign"; version="0.8-67"; sha256="1mcrm2pydimbyjhkrw5h380bifj1jhwzifph1xgh90asf3lvd1xd"; depends=[]; }; forensic = derive2 { name="forensic"; version="0.2"; sha256="0kn8wn6p3fm67w88fbarg467vfnb42pc2cdgibs0vlgzw8l2dmig"; depends=[combinat genetics]; }; forensim = derive2 { name="forensim"; version="4.3"; sha256="1jhlv9jv832qxxw39zsfgsf4gbkpyvywg11djldlr9vav7dlh3iw"; depends=[tcltk2 tkrplot]; }; - forestFloor = derive2 { name="forestFloor"; version="1.9.1"; sha256="1kg7w75a1l9sfp1bq1srlc11dp19znb1nk2lw64yab7hwna5zknr"; depends=[kknn Rcpp rgl]; }; + forestFloor = derive2 { name="forestFloor"; version="1.9.5"; sha256="09xwk42qkwq47bpybnxbr1flraadmxp7bp9r1ii1zvmcp3zgxqcl"; depends=[kknn Rcpp rgl]; }; + forestinventory = derive2 { name="forestinventory"; version="0.1.0"; sha256="1hd56w1lzq6mfsikvcxdyh1l51fhw5wy9fy99v48i1hy87qx7p3d"; depends=[plyr]; }; forestmodel = derive2 { name="forestmodel"; version="0.4.0"; sha256="1csw85zmj39zk3qr0238xjxj9qvp4fda62cqiliy5qm3a68kgpk3"; depends=[broom dplyr ggplot2 lazyeval]; }; - forestplot = derive2 { name="forestplot"; version="1.4"; sha256="0m6wrk2adfj82ggjigzisarzqlz59ffzdbiz1irf76wybivzggx6"; depends=[magrittr]; }; - formatR = derive2 { name="formatR"; version="1.3"; sha256="09fsd0z6nhksc1h921h8q28f87hr6d1q8d6dmpxphjylb9r5xmj4"; depends=[]; }; - formattable = derive2 { name="formattable"; version="0.1.5"; sha256="0kh3npzj42d0b21bbv9jidlkn9a8wldhg36ql5mgiiqyhva76qab"; depends=[htmltools htmlwidgets knitr markdown shiny]; }; + forestplot = derive2 { name="forestplot"; version="1.7"; sha256="0sxbh7chmy3aixvwks2mzzx0n6h9zkk6c4nsw3ihll213x8pph4q"; depends=[checkmate magrittr]; }; + formatR = derive2 { name="formatR"; version="1.4"; sha256="1fvynq0fj1r9grg9vvfdh5fl2riv6qki9f2rfpyvbvqq3xxpmi3f"; depends=[]; }; + formattable = derive2 { name="formattable"; version="0.2.0.1"; sha256="1s7jjgm0j24vdwm39933ygh6xnxcfvzy4kl2mmfgas4czfcmd4rf"; depends=[htmltools htmlwidgets knitr rmarkdown]; }; formula_tools = derive2 { name="formula.tools"; version="1.5.4"; sha256="1qs7ls757qvh5gdkx32zslgpx1a4zk2vf8bbgjdax02jmlyp2qrp"; depends=[operator_tools]; }; - fortunes = derive2 { name="fortunes"; version="1.5-2"; sha256="1wv1x055v388ay4gnd1l8y6dgvamyfvmsd0ik9fziygwsaljb049"; depends=[]; }; + fortunes = derive2 { name="fortunes"; version="1.5-4"; sha256="109ly9kpfn6hy294ava8795wy5z9l1bnl98hhhv8kn9naf4camdg"; depends=[]; }; forward = derive2 { name="forward"; version="1.0.3"; sha256="0swn5ysp3f660kl9jpmkck9324j1g3yhj2hl238rfrcr5wihxifc"; depends=[MASS]; }; fossil = derive2 { name="fossil"; version="0.3.7"; sha256="188hyb3r1dnxkmqf2czh1kdzmk4mjc0v1kn1zml2yvxaxk7adsrz"; depends=[maps shapefiles sp]; }; fourPNO = derive2 { name="fourPNO"; version="1.0.3"; sha256="1354rlrq7a748430v9kp7m896z1xz43fggy0nzsh9wq5r9kc9az2"; depends=[Rcpp RcppArmadillo]; }; + fourierin = derive2 { name="fourierin"; version="0.1.2"; sha256="0pr7207w7hv6wjmmzfxwf584nnymg2jyxjb7003ljh2bdiqp1y7z"; depends=[Rcpp RcppArmadillo]; }; fpCompare = derive2 { name="fpCompare"; version="0.2.1"; sha256="0vva60xixlx6l8623qvj2sdn5w3gjscrv5g8hqmgir4f211lzg38"; depends=[]; }; + fpa = derive2 { name="fpa"; version="1.0"; sha256="0kgpl9qq0l10h0vdd2f8vnir0kdylh1jvvv5z4d9ygj1pl9qywhk"; depends=[fields reshape]; }; fpc = derive2 { name="fpc"; version="2.1-10"; sha256="15m0p9l9w2v7sl0cnzyg81i2fmx3hrhvr3371544mwn3fpsca5sx"; depends=[class cluster diptest flexmix kernlab MASS mclust mvtnorm prabclus robustbase trimcluster]; }; fpca = derive2 { name="fpca"; version="0.2-1"; sha256="13b102026xlfb7c2rb3xsqsymm7xpmaxppaafjkb5dx0b1lz0jrc"; depends=[sm]; }; fpow = derive2 { name="fpow"; version="0.0-2"; sha256="0am3nczimcfrm9hi02vl2xxsh703qjmr2j11y014mll3f2v1l8cy"; depends=[]; }; @@ -4256,126 +5302,156 @@ in with self; { fptdApprox = derive2 { name="fptdApprox"; version="2.1"; sha256="00vxwcwca7zfm4fr0x9898snr6j0474ci1bahjmpj2jxiclwnhzs"; depends=[]; }; fracdiff = derive2 { name="fracdiff"; version="1.4-2"; sha256="03l5dqpqwwi5c8fwc2vissfawcsignai60h2zalknkibvk782dwq"; depends=[]; }; fracprolif = derive2 { name="fracprolif"; version="1.0.6"; sha256="1cpb71yk1245j6qz4mqvpqc3s3lrmav4blp5wlxasjizn3ilwh66"; depends=[emg numDeriv]; }; - fractal = derive2 { name="fractal"; version="2.0-0"; sha256="17wz3c9f1l1rphzdn7j27j5nb1ll6j84f9ihk0z6fni41050szv7"; depends=[ifultools sapa scatterplot3d splus2R wmtsa]; }; + fractal = derive2 { name="fractal"; version="2.0-1"; sha256="1varigsw5chwz88dgipdg55fqfarvll3s7kcyqmhfm0wc7vvmz2q"; depends=[ifultools MASS sapa scatterplot3d splus2R wmtsa]; }; fractaldim = derive2 { name="fractaldim"; version="0.8-4"; sha256="0fln4qn0d79agnnlzi8b9g9qn90zynq1cg9v5isiyi71345v45nr"; depends=[abind]; }; fractalrock = derive2 { name="fractalrock"; version="1.1.0"; sha256="15f4w8hq3d8khgq269669ri16qxhar9646w40cw7wzh79r9gpf00"; depends=[futile_any futile_logger quantmod timeDate]; }; fractional = derive2 { name="fractional"; version="0.1.3"; sha256="1jz83y53s0xdphh1z3v3z7xhcmhx7rp0iiazw2vdsx2747r3rirn"; depends=[Rcpp]; }; + fragilityindex = derive2 { name="fragilityindex"; version="0.0.8"; sha256="07d7rx2iymp3w1rmzd9n2r8ydjldxxfpp8a56pw6srlnjj4xi80a"; depends=[pbapply stringr survival]; }; frailtyHL = derive2 { name="frailtyHL"; version="1.1"; sha256="1xjdph0ixanf9w4b6hx6igfhkcp8h93sclrg0pgqgmbvm41lhb1x"; depends=[Matrix numDeriv survival]; }; - frailtySurv = derive2 { name="frailtySurv"; version="1.2.2"; sha256="00zi4lslcwgf5b8piaig6vh4gb8cnr4xcl425x0bw9hj9b1zsmq1"; depends=[ggplot2 nleqslv numDeriv Rcpp reshape2 survival]; }; - frailtypack = derive2 { name="frailtypack"; version="2.8.3"; sha256="1kjqq8mhd85q6c2hnxljqphc0ksq6cnbrksnis4c1rx1wcwrwqdf"; depends=[boot MASS nlme survC1 survival]; }; - frair = derive2 { name="frair"; version="0.4"; sha256="1g52ykj1m9znpp0pvry7dnmhg4m73nbkw0bp31zl6pcsdgmxxqjr"; depends=[bbmle boot emdbook]; }; + frailtySurv = derive2 { name="frailtySurv"; version="1.3.2"; sha256="0qsq96p29rxlfkhbmg8cfqdnpzh8wq2nadpiim9d6l0bs20r51gl"; depends=[ggplot2 nleqslv numDeriv Rcpp reshape2 survival]; }; + frailtypack = derive2 { name="frailtypack"; version="2.10.5"; sha256="1hlbbkagy1hy3yrlabq4r8rn0hzsyhabj0zfj6z37r4a3a0hp5fm"; depends=[boot MASS nlme survC1 survival]; }; + frair = derive2 { name="frair"; version="0.5"; sha256="1fdyvv75mgdwn5csi2wgy4cadw753q941jzpycvjfln77n9nixci"; depends=[bbmle boot lamW]; }; franc = derive2 { name="franc"; version="1.1.1"; sha256="0agrzdrgfw4a3jn6a2867rf99a87ngv6wi73ys2l7gr7mkpq54v5"; depends=[jsonlite]; }; frbs = derive2 { name="frbs"; version="3.1-0"; sha256="0ngvi7lg6aviwic8f4ya03khyzh3ksglpmsnrdjjznwj874y2wim"; depends=[]; }; freeknotsplines = derive2 { name="freeknotsplines"; version="1.0"; sha256="19zs42q9njknirdbrbnp8bv4vr32kd8wxmkqj0a0nh06i5fcx67r"; depends=[]; }; freestats = derive2 { name="freestats"; version="0.0.3"; sha256="0b18n8idap089gkmjknzzb94dvs2drpdqs0mrw7dqnacxgbbqwfj"; depends=[MASS mvtnorm]; }; + freesurfer = derive2 { name="freesurfer"; version="1.0"; sha256="0wsj5px7apfia55kajxhh5717sp6n1lh8wr1bdbk6v29cq4svvd6"; depends=[neurobase R_utils reshape2]; }; freqMAP = derive2 { name="freqMAP"; version="0.2"; sha256="02hpkqqrxifrr1cxn5brp166jwa8lgl1mcgmq7s8csrbbd900ziv"; depends=[]; }; + freqdist = derive2 { name="freqdist"; version="0.1"; sha256="1pb45jabv9s3qa7v1isd5wm9b0g9p04q5h18spcaax8397s0d2fv"; depends=[]; }; freqdom = derive2 { name="freqdom"; version="1.0.4"; sha256="0flx4316q8m9v5zy8bxjp18a25p1vwq6wvfs81r0g609ag54vy5b"; depends=[mvtnorm]; }; freqparcoord = derive2 { name="freqparcoord"; version="1.0.1"; sha256="011p8xh0i0x0w5rv5qz5a7fxwdhxd8l2bqi9bxv5almxd0y7ajqx"; depends=[FNN GGally ggplot2 mvtnorm]; }; freqweights = derive2 { name="freqweights"; version="1.0.2"; sha256="183x94j727z6phayy0zy9q4x5fnww8h51ghpmc6jbwc5r40vp4px"; depends=[biglm data_table dplyr FactoMineR fastcluster plyr]; }; frm = derive2 { name="frm"; version="1.2.2"; sha256="1dl0vca9r2dams99sc13pfpi0b3yb02x59f4c1jz07zz005c8l23"; depends=[]; }; - frmhet = derive2 { name="frmhet"; version="1.1.2"; sha256="1a6q5qz22b4sx5l1jz50x1q3bz8sj91dj2cahq28h6ss5b8vfn0y"; depends=[]; }; - frmpd = derive2 { name="frmpd"; version="1.0.1"; sha256="104frdraawj8g76589kz4csbgzkvs4rgdhgwmb77srhqp5nc8v96"; depends=[]; }; + frmhet = derive2 { name="frmhet"; version="1.1.3"; sha256="07sgsfhzrci8g1b0gicjfca1mgd8ppfqpkpp4q9bdxnjvdvlf45s"; depends=[]; }; + frmpd = derive2 { name="frmpd"; version="1.1.0"; sha256="0irgqdr0vr8k408lsxcrjkjbjvqvmy5mnjw9c1ghs86isrp5mciz"; depends=[]; }; frmqa = derive2 { name="frmqa"; version="0.1-5"; sha256="0vd5jnjzhkc0vd4cqn4cs6a3limd4fxwyb5i7845rwmkzk1944aj"; depends=[partitions Rmpfr]; }; + fromo = derive2 { name="fromo"; version="0.1.3"; sha256="132i9z8zwjm8a7fw5mdqq0a3q8hd985mrifg67lddqkxwgc8lxcc"; depends=[Rcpp]; }; frontier = derive2 { name="frontier"; version="1.1-0"; sha256="0k2ap22qddzki63biikr1jzi5vmqz4j06d7qrf1y8axdq1q1cr44"; depends=[Formula lmtest micEcon miscTools moments]; }; frontiles = derive2 { name="frontiles"; version="1.2"; sha256="08qq25wbylvhvmq34wggyj0hwdlxfs9rfs8gjqsrg50xccchniqi"; depends=[classInt colorspace rgl sp]; }; frt = derive2 { name="frt"; version="0.1"; sha256="1qy76a1wkznaqzlyj1nq74mf1pnyly1s8gnff8q30zfccqk68cxv"; depends=[]; }; - fscaret = derive2 { name="fscaret"; version="0.9.4"; sha256="0cna1cixq021lka7c8jgfqr6h8vvyvylckkbfay10ng7cxpqa44c"; depends=[caret gsubfn hmeasure]; }; - fsia = derive2 { name="fsia"; version="1.0"; sha256="0qa4avd1xiwh1ih1cj067r7vipab2ngspq7hfd0xbapwx87fggrg"; depends=[]; }; - fslr = derive2 { name="fslr"; version="1.5.0"; sha256="0ks2g21f8zkf72y3rlhj7c54np9jadgf0nir2pyn2vcy6f0w85ai"; depends=[matrixStats oro_nifti R_utils scales stringr]; }; + fscaret = derive2 { name="fscaret"; version="0.9.4.1"; sha256="19g0vcgbq3l9b9x264jg5q17lrky7xrznc8wjxkvnjqdykjmzjhp"; depends=[caret gsubfn hmeasure]; }; + fsia = derive2 { name="fsia"; version="1.1"; sha256="18pblp22rfaklv283515qrx8liaqf84mm8gw9pj70qi068nw36x8"; depends=[]; }; + fslr = derive2 { name="fslr"; version="2.0"; sha256="010kd7h5dfqqq4vxhkyf11sg8aj5jhk92953y0jfln24z6qbkz5m"; depends=[matrixStats neurobase oro_nifti R_utils]; }; fso = derive2 { name="fso"; version="2.0-1"; sha256="02dr12bssiwn8s1aa1941hfpa4007gd65f3l4s74gs2vgjzdxf8s"; depends=[labdsv rgl]; }; + fst = derive2 { name="fst"; version="0.7.2"; sha256="1y2yzx8bwn747vibi0dds1m1rwyy588nppvbgp4bars1w3h4pps5"; depends=[data_table Rcpp]; }; ftnonpar = derive2 { name="ftnonpar"; version="0.1-88"; sha256="0df9zxwjpfc939ccnm1iipwhpf76b34v0x74nsi1mm1g927dfl0i"; depends=[]; }; fts = derive2 { name="fts"; version="0.9.9"; sha256="1qgp8xdwr5pp2b7nd8r717a6p8b6izwqrindx2d1d0lhhnqlcwhv"; depends=[BH zoo]; }; + ftsa = derive2 { name="ftsa"; version="4.7"; sha256="0n31vd73r2zm7mzlkd4bjpz9p61qq35jld06bv9p9dg0y883xnig"; depends=[colorspace fda forecast MASS pcaPP rainbow sde]; }; ftsspec = derive2 { name="ftsspec"; version="1.0.0"; sha256="12f9yws1r26i240ijq0xqprl3pgbw50wv68jsm75ycplbs2jsyhs"; depends=[sna]; }; fueleconomy = derive2 { name="fueleconomy"; version="0.1"; sha256="1svy5naqfwdvmz98l80j38v06563vknajisnk596yq5rwapl71vj"; depends=[]; }; fugeR = derive2 { name="fugeR"; version="0.1.2"; sha256="0kd90s91vzv0g3v9ii733h10d8y6i05lk21p5npb3csizqbdx94l"; depends=[Rcpp snowfall]; }; - fullfact = derive2 { name="fullfact"; version="1.0"; sha256="1yda1fkpzzgzcm5m2iflvay9w3zbc31yx2sy30swjy92a2z4abm4"; depends=[afex lme4]; }; - fulltext = derive2 { name="fulltext"; version="0.1.6"; sha256="1k415wzcxbgbh3p38q61wymjy7a5dicy7k7q3d6syk3pc9nx1cmr"; depends=[aRxiv digest httr jsonlite magrittr R_cache rcrossref rentrez rplos rredis tm whisker xml2]; }; + fullfact = derive2 { name="fullfact"; version="1.1"; sha256="1pnz1gykmvxdwf1a3n1z4v9md6kjlai4fvzqjzcyshw5nq81dciw"; depends=[afex lme4]; }; + fulltext = derive2 { name="fulltext"; version="0.1.8"; sha256="14gvhjc9433hnb5dh88svxyahbcv968njxjfwgc5ii9lpcpw5935"; depends=[aRxiv digest httr jsonlite magrittr R_cache rcrossref rentrez rplos rredis tm whisker xml2]; }; fun = derive2 { name="fun"; version="0.1-0"; sha256="0z4nq2w1wz1clc7cf87pf870hayxq5mpzhllfgwj4mmh2xpphnrf"; depends=[]; }; + funData = derive2 { name="funData"; version="1.0"; sha256="13f6jlw3g7glz5anlwmj7g64kia18ldm3nfj55qybjfh4b6rh7v3"; depends=[abind fields foreach]; }; funFEM = derive2 { name="funFEM"; version="1.1"; sha256="08798lvryykrxfvp2297anzl4gi81gwvc1qyyzq16nafjf65kwfy"; depends=[elasticnet fda MASS]; }; funHDDC = derive2 { name="funHDDC"; version="1.0"; sha256="038m64yv27wz7ki2gcn94q011p8mv0ggmli5n27y0f5bnkfh6d6w"; depends=[fda]; }; - funModeling = derive2 { name="funModeling"; version="1.1"; sha256="1zdc6x75ksdm030pw8ldb00x5prlci29d6p6dbxiavwh9z4081z3"; depends=[ggplot2 gridExtra Hmisc pander plyr reshape2 ROCR scales]; }; + funModeling = derive2 { name="funModeling"; version="1.6"; sha256="1h0qzdx6yk10snhx6apriz3al52wqrisffqvanhpznsvk8yg3wvd"; depends=[dplyr ggplot2 gridExtra Hmisc lazyeval pander reshape2 ROCR scales]; }; functional = derive2 { name="functional"; version="0.6"; sha256="120qq9apg6bf39n9vnp68db5rdhwvnj2vi12a8j8243vq8kqxdqr"; depends=[]; }; functools = derive2 { name="functools"; version="0.2.0"; sha256="0g62jdia3n09vq8mx1m2r4nl3jfcadzpym0wkldzzzjcfs90vl6b"; depends=[]; }; - funcy = derive2 { name="funcy"; version="0.8.4"; sha256="1rgdldjjpy8zvll6lhx6al70iazg4vfd86jhyx1c50hpnnl0yajb"; depends=[calibrate car caTools cluster fda fields flexclust kernlab MASS Matrix plyr sm wavethresh]; }; - fungible = derive2 { name="fungible"; version="1.3"; sha256="0rzvib56p7sbiqk0ac36fdfrsavivdw5123gkklw33qny3jzzvhp"; depends=[e1071 lattice MASS mvtnorm nleqslv R2Cuba stringr]; }; - funr = derive2 { name="funr"; version="0.2.0"; sha256="0fmqrjvzpc7jbs85fznw723k9xmpxvbj65nkfc9qrvskgmja4mjn"; depends=[]; }; - funreg = derive2 { name="funreg"; version="1.1"; sha256="1sxr4mylcpbya197d55yi6d7g5pfspaf59xxbwjgmwgjw06rl76r"; depends=[MASS mgcv mvtnorm]; }; - funtimes = derive2 { name="funtimes"; version="2.1"; sha256="1h8d2x683a1s4inlbh5y4zijzyny1q902xa5any9hcb6svjfqr6z"; depends=[Jmisc]; }; + funcy = derive2 { name="funcy"; version="0.8.6"; sha256="0wlcwwmv92djj35i7nnfns5l79fca6hsfrjxgsqmwgjb28gy19bs"; depends=[calibrate car caTools cluster fda fields flexclust kernlab MASS Matrix plyr sm wavethresh]; }; + fungible = derive2 { name="fungible"; version="1.5"; sha256="1f4q26rfl7d35ng5nx11mzzv9fhk4zg62j63c59i649wcx1xsan9"; depends=[e1071 lattice MASS mvtnorm nleqslv R2Cuba stringr]; }; + funr = derive2 { name="funr"; version="0.3.2"; sha256="11mjd1ba9kwawh7k5py54mkq4g1df79d7qivan8fj11qfwfzm679"; depends=[]; }; + funrar = derive2 { name="funrar"; version="1.0.2"; sha256="0qxhlqc1i0w91xmqawbsqk7gh8fdxq165qrjkbprsw548p5jbdbn"; depends=[cluster dplyr]; }; + funreg = derive2 { name="funreg"; version="1.2"; sha256="199zvqali0sb0z4yp20rm5da0kd7z3rgv47g1cb1apsbcw0cq51n"; depends=[MASS mgcv mvtnorm]; }; + funtimes = derive2 { name="funtimes"; version="3.0"; sha256="017qad38q5zpbzpsln0cns7y1wf5q5xm7kll4knqrfa6zwaijl92"; depends=[Jmisc]; }; + furniture = derive2 { name="furniture"; version="1.4.1"; sha256="1bziqav2y7h7fkv84ci3p483zbn2rw0wr0cz6jc5a9h8g1gz80cl"; depends=[knitr]; }; futile_any = derive2 { name="futile.any"; version="1.3.2"; sha256="09z12dlj7cnkfwnmgsjknsghirv1cry83w4a9k4d0w5a1jnlr5jg"; depends=[lambda_r]; }; - futile_logger = derive2 { name="futile.logger"; version="1.4.1"; sha256="1plld1icxrcay7llplbd4i8inpg97crpnczk58mbk26j8glqbr51"; depends=[futile_options lambda_r]; }; - futile_matrix = derive2 { name="futile.matrix"; version="1.2.2"; sha256="1cb975n93ck5fma0gvvbzainp7hv3nr8fc6b3qi8gnxy0d2i029m"; depends=[futile_logger lambda_r lambda_tools RMTstat]; }; + futile_logger = derive2 { name="futile.logger"; version="1.4.3"; sha256="1r3nayk0z9n1svbf8640vw90dal5q07nkn0gv4bnva3pbzb352sy"; depends=[futile_options lambda_r]; }; + futile_matrix = derive2 { name="futile.matrix"; version="1.2.6"; sha256="10v7ffjm8az75lb39526p3y8b1zhmmzx07pybiy20zydznhyvv2p"; depends=[futile_logger lambda_r lambda_tools RMTstat]; }; futile_options = derive2 { name="futile.options"; version="1.0.0"; sha256="1hp82h6xqq5cck67h7lpf22n3j7mg3v1mla5y5ivnzrrb7iyr17f"; depends=[]; }; futile_paradigm = derive2 { name="futile.paradigm"; version="2.0.4"; sha256="14xsp1mgwhsawwmswqq81bv6jfz2z6ilr6pmnkx8cblyrl2nwh0v"; depends=[futile_options RUnit]; }; - future = derive2 { name="future"; version="0.12.0"; sha256="0cr8xddwkn9pwcrjvfd0z000sx233p3zafrp3b8waz6sh6zs1k7k"; depends=[digest globals listenv]; }; + future = derive2 { name="future"; version="1.3.0"; sha256="00ys5h583s9kr415l6mv79k2s63b13jk7kjrvfmzskzvxrgqizm4"; depends=[digest globals listenv]; }; + future_BatchJobs = derive2 { name="future.BatchJobs"; version="0.13.1"; sha256="0w3mbrqxy7w7rl2blka81djmlgj6yffxssn56f0xfwfwhbhsn1pc"; depends=[BatchJobs future R_utils]; }; + futureheatwaves = derive2 { name="futureheatwaves"; version="1.0.3"; sha256="122b2z86bzxfch67y6cpq8wj62mw0dgkzbmnpwi247kdx7w5mw1f"; depends=[data_table dplyr ggplot2 ggthemes leaflet Rcpp stringr tidyr]; }; + fuzzr = derive2 { name="fuzzr"; version="0.2.0"; sha256="0m5x3khps7mk43xvk76jqylcxs9581y1ppr58bq68j4rqraq3r1s"; depends=[assertthat progress purrr]; }; fuzzyFDR = derive2 { name="fuzzyFDR"; version="1.0"; sha256="0zd8i9did0d9gp42xjmwrccm32glabvvy08kl8phhwb1yaq53h7w"; depends=[]; }; fuzzyRankTests = derive2 { name="fuzzyRankTests"; version="0.3-7"; sha256="0mhml0zzya58yn4wrafxk62agfrck6rryn5klprr416pj83pzcgk"; depends=[]; }; + fuzzyforest = derive2 { name="fuzzyforest"; version="1.0.2"; sha256="11lgv9faq1avgvb58br2dbd46k7449v3y5cv0cjmlj63a6357lqw"; depends=[doParallel doRNG foreach ggplot2 randomForest]; }; + fuzzyjoin = derive2 { name="fuzzyjoin"; version="0.1.2"; sha256="1anipzcr5j5vp9p8hy16vdc7rf8kd0nm5r72j9998npad7k5xj8d"; depends=[dplyr geosphere purrr stringdist stringr tidyr]; }; fwdmsa = derive2 { name="fwdmsa"; version="0.2"; sha256="0p0kh8am6gajfaixkvq61f12hfbm6chl9372yzn1yilhiyvqdxgp"; depends=[]; }; fwi_fbp = derive2 { name="fwi.fbp"; version="1.7"; sha256="1wk9cr0kk6zkbf111bv87n7b1wwx1qrsbjxydvbjvy8bgz0nfa62"; depends=[]; }; fwsim = derive2 { name="fwsim"; version="0.3.3"; sha256="1ix4sl2krlr0b0wfgvy73qhpmkjymqcci3q3v60j20zapi55gxn2"; depends=[Rcpp]; }; fxregime = derive2 { name="fxregime"; version="1.0-3"; sha256="15fh8yhcba2gw2xfd0yiw5ssvbgb62l6vb28bxz71ckdyv9nsahk"; depends=[car sandwich strucchange zoo]; }; g_data = derive2 { name="g.data"; version="2.4"; sha256="14a4m0v38p3j1k1kymkxwydlgm8b73hlx9m80sg1l4aj38fvflzl"; depends=[]; }; + g2f = derive2 { name="g2f"; version="0.1"; sha256="1njx03hnfvzqyzhyjg5zwikv36xggss2vc82vpfybg6rqkx3rqbd"; depends=[KEGGREST minval sybil]; }; gCat = derive2 { name="gCat"; version="0.1"; sha256="10990ilsjk52kqkcdngj4nq0kcbn4w1syxl1mqjq2n5g1l002yjy"; depends=[]; }; gIPFrm = derive2 { name="gIPFrm"; version="2.0"; sha256="1syjsnna7b7y27yf7zsxjwq8z5f4wxf2hfadhgjaw898gvfcnrbc"; depends=[]; }; + gLRTH = derive2 { name="gLRTH"; version="0.1.0"; sha256="0a4vcfb54sqbk43gp397dwc02701wzsf4sxq2r121m2amad79nl5"; depends=[]; }; gMCP = derive2 { name="gMCP"; version="0.8-10"; sha256="1alfy91mk6zx0k49w5ksa77qg5iqbav20ydfl1w7bh8dzp4xxxqk"; depends=[CommonJavaJars JavaGD MASS Matrix multcomp mvtnorm PolynomF rJava xlsxjars]; }; - gMWT = derive2 { name="gMWT"; version="1.0"; sha256="12ryjpq0k3brw4xy4f6j89zm94j6phbzn9ga0nr9bzfvslhqjhna"; depends=[clinfun Rcpp RcppArmadillo]; }; + gMOIP = derive2 { name="gMOIP"; version="1.1.0"; sha256="122yzwicsq7q98x5dxk1mmf148v2w64jz3pd3535himx85gy9zy3"; depends=[ggplot2 ggrepel]; }; + gMWT = derive2 { name="gMWT"; version="1.1"; sha256="1ws96x3vjswh6m6s9zn3r9gp7xp6ybdkkxsq9a73ng2zqz2qjdl0"; depends=[clinfun Rcpp RcppArmadillo]; }; gPCA = derive2 { name="gPCA"; version="1.0"; sha256="1ylb1d24dxnzpws9bbanwhyizjr3ljky2bhrph4c5yaq0zwwbrkw"; depends=[]; }; gPdtest = derive2 { name="gPdtest"; version="0.4"; sha256="00dlhnklfg2yp4hp7yjgr2nfswv22c007xq1mxdbkll62zgd94mq"; depends=[]; }; - gProfileR = derive2 { name="gProfileR"; version="0.5.3"; sha256="0kv01b1ihwggzjd9plznz3il3b97pja11nqki3378zvpgfy5wzdn"; depends=[plyr RCurl]; }; - gRain = derive2 { name="gRain"; version="1.2-5"; sha256="1rzg8w36qhpar1kn1dvjw54j1i0anpqr9iv51i9gf4dm6s3afylq"; depends=[graph gRbase igraph Rcpp RcppArmadillo RcppEigen]; }; + gProfileR = derive2 { name="gProfileR"; version="0.6.1"; sha256="1qix15d0wa9nspdclcawml94mng4qmr2jciv7d24py315wfsvv8p"; depends=[plyr RCurl]; }; + gRain = derive2 { name="gRain"; version="1.3-0"; sha256="0xb746pyh8k8w1a8nz7z41bflx5xr0cqdq5l5wj7j464zv2cw6jy"; depends=[functional graph gRbase igraph magrittr Rcpp RcppArmadillo RcppEigen]; }; gRapHD = derive2 { name="gRapHD"; version="0.2.4"; sha256="0fxd04s6zh23chks4k6nwb5w408xjy89b44pa42kv6qnqj86ylvm"; depends=[graph]; }; gRapfa = derive2 { name="gRapfa"; version="1.0"; sha256="07yzwzna9pdyzndxk6wwyl6v3gkfc7dvy1ixmdl3d38mcl1ahwyq"; depends=[igraph]; }; - gRbase = derive2 { name="gRbase"; version="1.7-5"; sha256="1bl53dgv4n1hfy1ckp5wn9k5xnd97pdy07q8grd84vpi2fbdc454"; depends=[graph igraph Matrix RBGL Rcpp RcppArmadillo RcppEigen]; }; - gRc = derive2 { name="gRc"; version="0.4-1"; sha256="1a6q24yj7js1sk0lfqbm7kdv605cby6i711w4dlygsxdvwxbrsdr"; depends=[graph gRbase Rgraphviz]; }; + gRbase = derive2 { name="gRbase"; version="1.8-1"; sha256="07b5vl55v04ycwwh92xp86c12kxvhrlbakjrlxrlq8i8drs3bpcj"; depends=[graph igraph magrittr Matrix RBGL Rcpp RcppArmadillo RcppEigen]; }; + gRc = derive2 { name="gRc"; version="0.4-2"; sha256="0cqc3s7a1njxzmnx7yx1yjkrazbai3gpw2kc4l7g49ld4j40bsln"; depends=[gRbase MASS]; }; gRim = derive2 { name="gRim"; version="0.1-17"; sha256="0vn031r318kp78cx00n43fc42bv6sjyb8dm6q0l08s0g9n2w17dp"; depends=[gRain gRbase igraph Rcpp RcppArmadillo]; }; gSEM = derive2 { name="gSEM"; version="0.4.3.4"; sha256="18kh41ibvfflz59gykiq7j2c6a72i8b0w8c2mcprd1nzhnyhvmhy"; depends=[DiagrammeR htmlwidgets knitr MASS]; }; gSeg = derive2 { name="gSeg"; version="0.3"; sha256="0dcvnxldvxmmzaz4cqpr40jpmny5l012m6j7xd5954bgfg06gs7w"; depends=[]; }; + gTests = derive2 { name="gTests"; version="0.1"; sha256="19037qn7q92dykry4wrnbdg7irkzk2vwz1j0kq2r836m03bs04nc"; depends=[]; }; + gWQS = derive2 { name="gWQS"; version="1.0.0"; sha256="0n0zwfqz5g4js5y3ss64dv5842jypr6sqacs32ax37immd34slhq"; depends=[ggplot2 Rsolnp tableHTML ztable]; }; gWidgets = derive2 { name="gWidgets"; version="0.0-54"; sha256="13lbbbnmkvb559klgsnz0q27qlyv102xakb6yccxsxjw249hm8c2"; depends=[]; }; - gWidgets2 = derive2 { name="gWidgets2"; version="1.0-6"; sha256="0xh1f9j1y3zifz8xrvyp41c8zdgqx8lx0cg1sdqhxv8j3mxibcsg"; depends=[digest]; }; - gWidgets2RGtk2 = derive2 { name="gWidgets2RGtk2"; version="1.0-4"; sha256="0vyms79ysmami1gfgjmvlqp62gbnxgwckdrbwhjkmlg9rdmbi9y7"; depends=[gWidgets2 memoise RGtk2]; }; - gWidgets2tcltk = derive2 { name="gWidgets2tcltk"; version="1.0-4"; sha256="1c9vfnr6j4lvshvdzp88a45pjrdl0dfhr1rxlpz95d3cks9rfq1f"; depends=[digest gWidgets2 memoise]; }; + gWidgets2 = derive2 { name="gWidgets2"; version="1.0-7"; sha256="02jrv5x7s3jm2ajpdvgsp4zkn65gjy96rvgdxhf9smp1kb6llzg0"; depends=[digest]; }; + gWidgets2RGtk2 = derive2 { name="gWidgets2RGtk2"; version="1.0-5"; sha256="0x6b05gag705mhp30wspamjrcx588gblgy839nv2j2w3n9k4vz98"; depends=[gWidgets2 memoise RGtk2]; }; + gWidgets2tcltk = derive2 { name="gWidgets2tcltk"; version="1.0-5"; sha256="1g0p7bl76rkkrixzw4b1s99gyvi8b5a4vbnsj2wmy7y9grbzndkm"; depends=[digest gWidgets2 memoise]; }; gWidgetsRGtk2 = derive2 { name="gWidgetsRGtk2"; version="0.0-83"; sha256="1kn2095jx1amyzbkvgf7m466zqfv548n232xc555bpsrw9ma5qhk"; depends=[cairoDevice gWidgets RGtk2]; }; gWidgetstcltk = derive2 { name="gWidgetstcltk"; version="0.0-55"; sha256="06991rqh4927bal7j718bn2ziy6rws8yq682lmp5vbqhdd36afv2"; depends=[digest gWidgets]; }; + gafit = derive2 { name="gafit"; version="0.5.1"; sha256="160z3cv22prf7118447dla9g1gimwkfad8zdil3fg8n4l22rk51a"; depends=[]; }; gains = derive2 { name="gains"; version="1.1"; sha256="1mn8db8yxgkf8z6nm6k76g5l3i3vnw750ksg3w9ysd2pcabb65g1"; depends=[]; }; galts = derive2 { name="galts"; version="1.3"; sha256="0b18hsdcsx43rn8l4x9nhy9hgggjr5b8kvjnbxrf6r23qsdk43mn"; depends=[DEoptim genalg]; }; - gam = derive2 { name="gam"; version="1.12"; sha256="00rx8y7pcxabwjvg0ch6c76xqs43drjg3ih3kflqxdcl2rmaapnd"; depends=[foreach]; }; - gamair = derive2 { name="gamair"; version="0.0-9"; sha256="014fkysiyd49q9j0rrqh6wlp4pqz1q8lqgrqjxbp59x2mfhgxhsg"; depends=[]; }; - gambin = derive2 { name="gambin"; version="1.3"; sha256="1gxlg7rngryxhixpvq6xswq7i5wm31ya6zllx5zdbh65b925hmxf"; depends=[]; }; - gamboostLSS = derive2 { name="gamboostLSS"; version="1.2-1"; sha256="0571wqxxpb1h0dd6fw6vz2f3n2id78k8zbc9zclzdhk5798y784c"; depends=[mboost]; }; + gam = derive2 { name="gam"; version="1.14"; sha256="1z31anm8c4aly7wd9j4zl34pfc0i8cr3p2yjhhf4x3850a1sjlv6"; depends=[foreach]; }; + gamCopula = derive2 { name="gamCopula"; version="0.0-2"; sha256="19sx0n9mavjwdzi5ii7n2mcrcrm1k1pbsdmvwnrsqvbvaz9r8vbg"; depends=[copula doParallel foreach gsl igraph MASS mgcv numDeriv VineCopula]; }; + gamair = derive2 { name="gamair"; version="1.0-0"; sha256="13n2n4b7givzvia93awy7ym0gihl4lr08w3a6ny2pq0f3zbhzw97"; depends=[]; }; + gambin = derive2 { name="gambin"; version="1.4"; sha256="11k5y400d8ghaagvd1wrisjsid5zn4qgv07qf60a6f4ynsfbigca"; depends=[]; }; + gamboostLSS = derive2 { name="gamboostLSS"; version="1.2-2"; sha256="1np2pb47pv1jgg1gl9k728bfxaq10yghnmgx2ahi2a86b6pzff2s"; depends=[mboost]; }; gamboostMSM = derive2 { name="gamboostMSM"; version="1.1.87"; sha256="0if0x92lch57ksll8d5i3jzk0kh40593b20c17g3hvc33920c7r0"; depends=[mboost]; }; gamclass = derive2 { name="gamclass"; version="0.56"; sha256="13gy8ys69dkhm54x3vcpqblq4j2hkbsnaswzcq0v0saqd9b1shcs"; depends=[ape car DAAG KernSmooth lattice latticeExtra MASS mgcv randomForest rpart]; }; games = derive2 { name="games"; version="1.1.2"; sha256="01hbbr2hsxi5j9axpdl0jihpd55pa9hacjxmab8p7cixk3xqqqbf"; depends=[Formula MASS maxLik stringr]; }; gamlr = derive2 { name="gamlr"; version="1.13-3"; sha256="05hxmhmgs83q6d5jhq9y5b5llk1pi2jf61286pmnwbzmdwdhrbr2"; depends=[Matrix]; }; - gamlss = derive2 { name="gamlss"; version="4.3-8"; sha256="1vgw5j8vw731my76z8xdcb1clg4hsim4gfkzv38w49hw64vijhlr"; depends=[gamlss_data gamlss_dist MASS nlme survival]; }; - gamlss_add = derive2 { name="gamlss.add"; version="4.3-4"; sha256="1sbs6jc7ashmkv8qz953v8paq4783rzw3m82b8ils4qm53ni8m01"; depends=[gamlss gamlss_dist mgcv nnet rpart]; }; - gamlss_cens = derive2 { name="gamlss.cens"; version="4.3-2"; sha256="0kakgvlx7g8v6wdlnjyganmvpnv8zqr1ml6n2saz913ykn3mkc77"; depends=[gamlss gamlss_dist survival]; }; - gamlss_data = derive2 { name="gamlss.data"; version="4.3-2"; sha256="056s441i25gxg52669nqvjc2xryaw5izbh5f8lcjgkflynhb102z"; depends=[]; }; + gamlss = derive2 { name="gamlss"; version="5.0-1"; sha256="1ai7zgsbxx7hdz4qq87dwk94zwzvzpjkmvlzi4hwwjpk350xpwcj"; depends=[gamlss_data gamlss_dist MASS nlme survival]; }; + gamlss_add = derive2 { name="gamlss.add"; version="5.0-1"; sha256="1agk6pfm04hf9dp5r6dvxqkj1hykx23a16q7vch2sg752z0dadgk"; depends=[gamlss gamlss_dist mgcv nnet rpart]; }; + gamlss_cens = derive2 { name="gamlss.cens"; version="4.3-5"; sha256="06baf94kpprj03dggnyvvmi4nw3qa23cyy1crsa0zfnaqj915ypv"; depends=[gamlss gamlss_dist survival]; }; + gamlss_data = derive2 { name="gamlss.data"; version="5.0-0"; sha256="1mqz7m4iksmx939bz1lq05cxz3bfcksn2ggw3cv7b0k98cykgg1s"; depends=[]; }; gamlss_demo = derive2 { name="gamlss.demo"; version="4.3-3"; sha256="01p6abppwbnh2a2ks1g08z4iwq2fxf125y9s4qzssybsn76a3gf3"; depends=[gamlss_dist gamlss_tr rpanel]; }; - gamlss_dist = derive2 { name="gamlss.dist"; version="4.3-5"; sha256="0qq4nvcbh7s675bk3afv3wm0xdnzcbabdsbln8n16xgyvsiyr4pl"; depends=[MASS]; }; - gamlss_mx = derive2 { name="gamlss.mx"; version="4.3-2"; sha256="1hq0nv4l8z1iwbldf9vhdsgr0sd6jans90dvjgdvf2z66bvmc9i0"; depends=[gamlss gamlss_dist nnet]; }; + gamlss_dist = derive2 { name="gamlss.dist"; version="5.0-0"; sha256="1k1bn7a3kiasab27p21bgwacrz5z7ha3prl8m2gfnqx1i3z2kmci"; depends=[MASS]; }; + gamlss_mx = derive2 { name="gamlss.mx"; version="4.3-5"; sha256="1jfs3ib2imwgazf8v23fa12iaflv0pm944bkqklx8qcljxp1lcs7"; depends=[gamlss gamlss_dist nnet]; }; gamlss_nl = derive2 { name="gamlss.nl"; version="4.1-0"; sha256="083l5lsb0csxcp4vffvdv2nr7jk3s2gkcavx66m8inzw16j7xilz"; depends=[gamlss survival]; }; - gamlss_spatial = derive2 { name="gamlss.spatial"; version="1.3"; sha256="0mbvllgr5szrxwrr40jbn2c57hplkgpbnbr2v6pszjjygjcys6ga"; depends=[gamlss gamlss_dist mgcv spam]; }; - gamlss_tr = derive2 { name="gamlss.tr"; version="4.3-1"; sha256="1fdy61i2dmz2qafk92kl9acjbxx5gm8s9kkc8k9nnx6230qg8iq6"; depends=[gamlss gamlss_dist]; }; - gamlss_util = derive2 { name="gamlss.util"; version="4.3-2"; sha256="13facgyd14jl4j09d446jjzs91zwmv85g22gkyyi1hl4i5v5nfc4"; depends=[gamlss gamlss_dist zoo]; }; - gamm4 = derive2 { name="gamm4"; version="0.2-3"; sha256="19vy5wik9nh77cm25gp3j3j8w8vinwzx5pv90nzdzvx84yvvf0y3"; depends=[lme4 Matrix mgcv]; }; + gamlss_spatial = derive2 { name="gamlss.spatial"; version="1.3.1"; sha256="0gfayygwqiahmcpnwdpiaj8p323624cclcrpkip6gc08ddfbr377"; depends=[gamlss gamlss_dist mgcv spam]; }; + gamlss_tr = derive2 { name="gamlss.tr"; version="5.0-0"; sha256="02akydpvwl1qkhxpr72lv9qp4z2ra69abyq51b57rh4p60g78vhm"; depends=[gamlss gamlss_dist]; }; + gamlss_util = derive2 { name="gamlss.util"; version="4.3-4"; sha256="0p8lnwrn7cx97qnxls1x532f3ywszdyib2qiwx5qc7sam59h9c8j"; depends=[gamlss gamlss_dist zoo]; }; + gamm4 = derive2 { name="gamm4"; version="0.2-4"; sha256="0jssi97kmad1fmnjlymx6sjv1qcfyslhwfcx8bfzl8x15fqj1v9v"; depends=[lme4 Matrix mgcv]; }; gammSlice = derive2 { name="gammSlice"; version="1.3"; sha256="1vw8d0v0awyflh4gmbcf1g9nfx52cys8gpqvag5djri59p0y945a"; depends=[KernSmooth lattice mgcv]; }; + gamreg = derive2 { name="gamreg"; version="0.2"; sha256="0k6npl5m1i22lgdvfjnv00pxaxh7qfd6sddy6raf4j33i6hp6ff6"; depends=[doParallel foreach glmnet Rcpp RcppArmadillo robustHD]; }; gamsel = derive2 { name="gamsel"; version="1.7-3"; sha256="02j94va7srdb2wzj4f1b63qx9mlck0harsq140ndjgf9d9c44h01"; depends=[foreach mda]; }; gaoptim = derive2 { name="gaoptim"; version="1.1"; sha256="04igpn73k6f6652y496igwypfxmz4igg4jgxx6swqyi37182rqhm"; depends=[]; }; gap = derive2 { name="gap"; version="1.1-16"; sha256="0xyln7ffapm31cvx4n86ncyg3cdz5d2149qb5h5xx3kf0a8r7gpz"; depends=[]; }; + gapfill = derive2 { name="gapfill"; version="0.9.5-2"; sha256="1qmkr0yvc9akjaj30lxq2b4xrkxvdlmbkpk5zy89xvj6qnpdpb47"; depends=[fields foreach ggplot2 quantreg Rcpp]; }; gapmap = derive2 { name="gapmap"; version="0.0.4"; sha256="0xz19n0vvdzbfg6afp3y0qfbs3f2nfxib1cyya3cax5wqqfbzw3i"; depends=[ggplot2 reshape2]; }; gapminder = derive2 { name="gapminder"; version="0.2.0"; sha256="1fxjz8lr3bsj3vml4yvm8pm72wpmw7c97bgp7acjf0q7l9x0d4vq"; depends=[]; }; gaselect = derive2 { name="gaselect"; version="1.0.5"; sha256="0xzx00n46x6x7w1xbx8nvabkkrna45pv1i70787m8h05q1yrjjij"; depends=[Rcpp RcppArmadillo]; }; - gaston = derive2 { name="gaston"; version="1.4"; sha256="1bq2b8mdgs4a8mjs137i0rry82dqm4sdrydlhqs7f2maqb28j4zm"; depends=[LDheatmap Rcpp RcppEigen RcppParallel WhopGenome]; }; + gasfluxes = derive2 { name="gasfluxes"; version="0.2"; sha256="01mqqj49p8z1m580a9fjrifyd7q2nl2qh8p3bxi2qqw38jxaccql"; depends=[AICcmodavg data_table MASS sfsmisc]; }; + gaston = derive2 { name="gaston"; version="1.4.9"; sha256="13fb67lq30rv91q5ffwijm011dqflrvywlcd0s2caims6zsarbvz"; depends=[Rcpp RcppEigen RcppParallel WhopGenome]; }; + gatepoints = derive2 { name="gatepoints"; version="0.1.2"; sha256="03m84xixsardy4yjzf67qway07hwhjpzc92xgvg9kb7npiclq5bl"; depends=[]; }; gaussDiff = derive2 { name="gaussDiff"; version="1.1"; sha256="0fqjdxp2ibbami75ba16d02dz4rz5sk8mni45di9anydx44g9d45"; depends=[]; }; + gaussfacts = derive2 { name="gaussfacts"; version="0.0.2"; sha256="095x7k7m7sy1gqkbm6wiqn26252dclz62sbnkv6cjvmbdxajl7m9"; depends=[]; }; gaussquad = derive2 { name="gaussquad"; version="1.0-2"; sha256="0bcvkssmwwngcd4cnv924n9h3c8z1w3x9c9bkwn5jbz9zyv1lfms"; depends=[orthopolynom polynom]; }; - gazepath = derive2 { name="gazepath"; version="1.0"; sha256="00k6617wra9pcvyr94mr48c21l7z6grlpgf9g02lh23p6900fjxq"; depends=[]; }; + gazepath = derive2 { name="gazepath"; version="1.1"; sha256="0zq7bcld41737qk94gjbcphpirrnnf8k6z3f8l3jay2n47yn4gji"; depends=[jpeg scales SDMTools shiny zoo]; }; gb = derive2 { name="gb"; version="1.1.8-8"; sha256="18n9wqz82mjxjgzk8vc68kyz3b6lk21d2f16551d6fikjla03adf"; depends=[boot]; }; gbRd = derive2 { name="gbRd"; version="0.4-11"; sha256="06x97rw5i6v6cgjxkfhxnw4dn7lghn5q6ra7ri5ag1x9dkfzcl82"; depends=[]; }; gbm = derive2 { name="gbm"; version="2.1.1"; sha256="0jkjr09w9cgfb21aznvr9nivxjmj1zxfsl7gafy4mwh719jzygy0"; depends=[lattice survival]; }; gbm2sas = derive2 { name="gbm2sas"; version="2.1"; sha256="0ssjlv849vssmncn01ccpp2myqib5f3g88g0d4rqma2z0ivdpk23"; depends=[gbm]; }; + gbp = derive2 { name="gbp"; version="0.1.0.4"; sha256="0awg724gsfwlb0fjcvw0450qdsk4m8x8is16pj5c8fx6nc8rn8bv"; depends=[data_table magrittr Rcpp RcppArmadillo rgl]; }; + gbs2ploidy = derive2 { name="gbs2ploidy"; version="1.0"; sha256="0gdjfqs9ccyaw7vi22wbyc742n1badr5ypr08g6rvi8ka5lmx836"; depends=[MASS rjags]; }; + gbts = derive2 { name="gbts"; version="1.0.1"; sha256="1n6180sfr5m7vms8rk8pwsg7nxyw3pmq05bh72462ygyfykivifm"; depends=[doParallel doRNG earth foreach gbm xgboost]; }; gbutils = derive2 { name="gbutils"; version="0.2-0"; sha256="1hi2kq4m7lrhd9yikf4qb0xccr6v1pp7kmly5j68xd3m95fi86rc"; depends=[]; }; - gcbd = derive2 { name="gcbd"; version="0.2.5"; sha256="0fkg6vk0jkl6680n1hljyv783j4hd84mql0k4pfblvqafwv4nhm3"; depends=[lattice plyr reshape RSQLite]; }; + gcKrig = derive2 { name="gcKrig"; version="1.0.1"; sha256="1iqbhfw4ib3lgjbaspjdh2qxif1inwly9fi8hyf4x6a153f20502"; depends=[Rcpp RcppArmadillo]; }; + gcbd = derive2 { name="gcbd"; version="0.2.6"; sha256="1dvnly0aljv2c4x7sn3q55ncvfdfjfgp7w0k2900p77h4w8nixia"; depends=[DBI lattice Matrix plyr reshape RSQLite]; }; gcdnet = derive2 { name="gcdnet"; version="1.0.4"; sha256="0fmy0li06rahch4ir0xa81yilvrd0zqyhmpl4hfxjahhl3npw370"; depends=[Matrix]; }; - gcerisk = derive2 { name="gcerisk"; version="16.1.2"; sha256="0i8h10yllxdl0az7byqisfx5x3s1nrp3xzp7myawmp4a0d11h1zc"; depends=[cmprsk ggplot2 survival]; }; + gcerisk = derive2 { name="gcerisk"; version="16.1.3"; sha256="0bjd3paxf1jrirv2grq20rk40l7izbw2y2dnj687hwcgah5021gv"; depends=[cmprsk ggplot2 survival]; }; gclus = derive2 { name="gclus"; version="1.3.1"; sha256="02ba6zj9bjwrzykamjp40ajynx9xjx9h2i85n0ym0r5lcki4x6fn"; depends=[cluster]; }; gcmr = derive2 { name="gcmr"; version="0.7.5"; sha256="1z1hdgdasmw3drld8nmkw6cc1xls1gaaym1mlr8lyida4gb3giv8"; depends=[betareg car Formula geoR lmtest nlme sandwich sp]; }; gconcord = derive2 { name="gconcord"; version="0.41"; sha256="1n3pfwk6vip19q1zhbz1n164f9vi7mig8pcd07c4wxnm5ir9dagy"; depends=[]; }; @@ -4384,138 +5460,184 @@ in with self; { gdata = derive2 { name="gdata"; version="2.17.0"; sha256="0kiy3jbcszlpmarg311spdsfi5pn89wgy742dxsbzxk8907fr5w0"; depends=[gtools]; }; gdimap = derive2 { name="gdimap"; version="0.1-9"; sha256="0ksbpcy739bvsiwis0pzd03zb4cvbd8d5wdf8whfn9k6mkj4x9rs"; depends=[abind colorspace geometry gridExtra gsl movMF oro_nifti rgl]; }; gdistance = derive2 { name="gdistance"; version="1.1-9"; sha256="174ngm0xg993gkmf70yaln98d2rpjvdx5ngf2aga1jzph6xxdj6d"; depends=[igraph Matrix raster sp]; }; - gdm = derive2 { name="gdm"; version="1.1.7"; sha256="1yqjg57ghrbn38i2llna1jppjfasrgxp696afzr9hgw1hlmyknsa"; depends=[plyr raster Rcpp reshape2 vegan]; }; - gdtools = derive2 { name="gdtools"; version="0.0.7"; sha256="1bmnf9d677f2jy8jnb9ymjz1qzm4yrd0qp6k5qrrly06jfffyx7g"; depends=[Rcpp]; }; + gdm = derive2 { name="gdm"; version="1.3.0"; sha256="185vsf8cvazk3865ds1vxwaaf3y8g7x52r5kp8rxkmnjavw6x24q"; depends=[doParallel foreach raster Rcpp reshape2 vegan]; }; + gdmp = derive2 { name="gdmp"; version="0.1.0"; sha256="1dlzxf17ssm10pw14mk5lk0plgav2mj8xf39dacyg9hlrz9pjwki"; depends=[]; }; + gdns = derive2 { name="gdns"; version="0.2.0"; sha256="0cyyqmbdd520h8q6b9dficgh1vc8zf47bih72zdqbz2hrkjm4yc4"; depends=[httr jsonlite purrr stringi]; }; + gdpc = derive2 { name="gdpc"; version="1.0.2"; sha256="03gh69vb3zmsi7rlikl3a7vr7sar3x12d8lar2qa0nfksn0qa6dk"; depends=[doParallel foreach Rcpp RcppArmadillo xts zoo]; }; + gds = derive2 { name="gds"; version="0.1.0"; sha256="0kc3l93640x8d6g3pa9gbr7ci5hmryg9i1nqpasgnvb6ixv6azbm"; depends=[]; }; + gdtools = derive2 { name="gdtools"; version="0.1.3"; sha256="1prh814lw3qkgnf0760cvpic1k68jhlkpcxlksv8chjkvsrnnf09"; depends=[Rcpp withr]; }; gear = derive2 { name="gear"; version="0.1.1"; sha256="1sqj9pz15j1v6fm4q2dp0zhdmy9zmmhmgxjwria5ihrp3b5hvwry"; depends=[lattice optimx sp]; }; gee = derive2 { name="gee"; version="4.13-19"; sha256="14n2fa2jmibw5j8n4qgbl8xbxhapmx4z3zrmkbcci39k9dsyplzb"; depends=[]; }; - geeM = derive2 { name="geeM"; version="0.8.0"; sha256="1glnzv06wsrxb1rp4p38w1hmnk4jvd78wymvffhkklwsrmg8jgw5"; depends=[Matrix]; }; - geepack = derive2 { name="geepack"; version="1.2-0.1"; sha256="0jipq3ylkvpg2qnwmfxlra6ad8lpsm8hllvqaiiddbhppqn9pj92"; depends=[]; }; + geeM = derive2 { name="geeM"; version="0.10.0"; sha256="0bk99kwh6xapkaxc3yis5x3d49j7pb45hq4ksbmkhz6ba21c4sn5"; depends=[Matrix]; }; + geepack = derive2 { name="geepack"; version="1.2-1"; sha256="13fkz38rsdk1byv6rdpdmphz5dd31r4h8ms49hali6hjh5rydzvy"; depends=[]; }; geesmv = derive2 { name="geesmv"; version="1.3"; sha256="0gm953z8q5cc1adl3d6vj5djg2inc880zfcdl5gd56fnb5gl6h1w"; depends=[gee MASS matrixcalc nlme]; }; - geigen = derive2 { name="geigen"; version="1.9"; sha256="1klglmhfrfys7kn89wjkg7gk4sjsz538xkw5k8sk039wr0qxk8yj"; depends=[]; }; + geigen = derive2 { name="geigen"; version="2.0"; sha256="00l4d512w2r2yc1naqfapfxv1l4v6ccww6hqzchf4zhkqmfr3mgd"; depends=[]; }; geiger = derive2 { name="geiger"; version="2.0.6"; sha256="1zry3iclj7yciiiysbq6z0kn759c7hdy5fq0dcszkskqcd92qfz1"; depends=[ape coda colorspace deSolve digest MASS mvtnorm ncbit Rcpp subplex]; }; - gelnet = derive2 { name="gelnet"; version="1.2"; sha256="1npzgbwpsbd0rpyp46njyhwhas0k28nj8b5rz1jmhgn4xf156wkn"; depends=[]; }; - gems = derive2 { name="gems"; version="1.0.0"; sha256="0h8z3ih24hxdv8bah4xf8f797pnwihby8hj93z6zw5sq9dyszxwa"; depends=[data_table MASS msm plyr]; }; - gemtc = derive2 { name="gemtc"; version="0.8"; sha256="00pjr9pcjvmlfbmssqwq2qh6cffgg7ach9nikjd5w086z0qnngis"; depends=[coda igraph meta plyr Rglpk rjags truncnorm]; }; + gelnet = derive2 { name="gelnet"; version="1.2.1"; sha256="10ygdfz9f5xhahlqb2divwvaljhiz8jhsd12wvq0qalx0v1h5j0p"; depends=[]; }; + gem = derive2 { name="gem"; version="0.19"; sha256="11gzqpc9s1bkx1w6ncjylmfqqf3wj5hgca4lzygvlni9xz7pk517"; depends=[signal]; }; + gemlog = derive2 { name="gemlog"; version="0.20"; sha256="1f36p2ggba2rkkp7i6y9sgwjg2ygjhb01ww8adfivksgj103ww8v"; depends=[signal]; }; + gems = derive2 { name="gems"; version="1.1.0"; sha256="1ydc0qj9xhhshgpyd4f8l7ljk6mszn2n1sg9s5l4c4y87br2rfyn"; depends=[data_table MASS msm plyr]; }; + gemtc = derive2 { name="gemtc"; version="0.8-2"; sha256="0c2a9gz6rvsc5qh66ixxa4dz6lwhcmmsf2vnvxl98c9kbvdwfqm9"; depends=[coda igraph meta plyr Rglpk rjags truncnorm]; }; gemtc_jar = derive2 { name="gemtc.jar"; version="0.14.3"; sha256="18hbiygpsv67flc4v6z6mir0rfq41v1vsh11dg9phmdr8bx4kcl1"; depends=[rJava]; }; genMOSS = derive2 { name="genMOSS"; version="1.2"; sha256="18qinckzz7wsw222skrq30izbj6s85i8hq6iicj9nng8gh6jydr8"; depends=[ROCR]; }; genMOSSplus = derive2 { name="genMOSSplus"; version="1.0"; sha256="1n3ngx1piy3l14k5k95wrgvrjw9238jkygfqanl3xg2na2mmkr26"; depends=[]; }; genSurv = derive2 { name="genSurv"; version="1.0.3"; sha256="0k5rfpq603szjb76gxffvsbqcav8182h8zwvg4kar68k72yfw1xs"; depends=[]; }; genalg = derive2 { name="genalg"; version="0.2.0"; sha256="1wzfamq8k5yhwbdx0wy1w5bks93brj0p890xxc4yqrja4w38ja3s"; depends=[]; }; genasis = derive2 { name="genasis"; version="1.0"; sha256="1r0733cc2hss3f8dp19s1ji55yp72mds7p3x1zvvpiks2r7w712p"; depends=[fitdistrplus Kendall]; }; + gencve = derive2 { name="gencve"; version="0.3"; sha256="00wbmaffm7mbfv3zl6mb24w1df1a8p24girwdh3a522lw3045iwf"; depends=[C50 class e1071 glmnet lars MASS nnet plus randomForest rpart]; }; gendata = derive2 { name="gendata"; version="1.1"; sha256="1r5bhmfblhk6d31v0byhp4a0pmpri6vk697zmmx9b0hvhda7mllf"; depends=[]; }; gender = derive2 { name="gender"; version="0.5.1"; sha256="0qiwqnpk2pzwvvvnnny0wmmrix1aq3kwnk6n9jyvqzh0v9bzd65g"; depends=[dplyr httr jsonlite]; }; - genderizeR = derive2 { name="genderizeR"; version="1.2.0"; sha256="1a7vafspdd64wr47k1z391ff1ri5f8bynlgn876khcxzhm2vwdva"; depends=[data_table httr magrittr stringr tm]; }; + genderizeR = derive2 { name="genderizeR"; version="2.0.0"; sha256="0r9r5x93zr58sfrww3l2vyvjyj8lir2yds08y6dzf88rs9v15w3c"; depends=[data_table httr magrittr stringr tm]; }; gendist = derive2 { name="gendist"; version="1.0"; sha256="0n3ax7iy40ymrxhmb88w31a4aacaps9f1iild42afin7i7vy4dq9"; depends=[]; }; geneListPie = derive2 { name="geneListPie"; version="1.0"; sha256="0z2gawfzhm05dafj4zlj6ifmf0dy7p1hrpa59lzxrnrc0wr6laji"; depends=[]; }; - geneNetBP = derive2 { name="geneNetBP"; version="1.0.0"; sha256="0xvri7h4ka3rf5cghwpz7ci7hdqrwrqfnxvwb7jkba73y3rmpri9"; depends=[graph Rgraphviz scales]; }; - geneSLOPE = derive2 { name="geneSLOPE"; version="0.36.6"; sha256="0c2b42j39yz85rffh0a9iqvb5fk5my7a6354dcxjz9fwh0irfdxf"; depends=[bigmemory ggplot2 SLOPE]; }; + geneNetBP = derive2 { name="geneNetBP"; version="2.0.1"; sha256="0sp1chyln5k2zsq7cdhvrqxwr2nhrll1pdl1l5g6fd4gjl2m1nwk"; depends=[bnlearn ggm gRain graph igraph Rgraphviz scales]; }; + geneSLOPE = derive2 { name="geneSLOPE"; version="0.37.0"; sha256="1pw6y0n1xnprz2d4hyhlp1m9grki7s9hi2f4nqxa34wynqkp4bx8"; depends=[bigmemory ggplot2 SLOPE]; }; geneSignatureFinder = derive2 { name="geneSignatureFinder"; version="2014.02.17"; sha256="1s9jj87wnzzgm9hnws09yhrxdlb6jw56i3ddwznvmh8vpzrspv4h"; depends=[class cluster survival]; }; + genemodel = derive2 { name="genemodel"; version="1.1.0"; sha256="1x6n6k9ifv2swhyrghvm6fsz5vh85cdik8225175i9msvmkh928n"; depends=[stringr]; }; genepi = derive2 { name="genepi"; version="1.0.1"; sha256="1whhdlq9p8gmygv7464hvfz6dhm65gqq1dqls6hgpmw822zxgbd5"; depends=[]; }; + generalCorr = derive2 { name="generalCorr"; version="1.0.3"; sha256="10gg89b423dncmcvk6ysifb26m99ywsbwb6x8injghgnjjibjq1k"; depends=[meboot np psych xtable]; }; + generalhoslem = derive2 { name="generalhoslem"; version="1.2.4"; sha256="043p40kldfs1r4p140cq7pzshv6y6adipfsfg8vyr1s2bd16ffvs"; depends=[epiR MASS reshape]; }; generator = derive2 { name="generator"; version="0.1.0"; sha256="0xjvnmnpdms8rrxxcz6pd8w4rnbv3ghzqv4m63zxia2l98x7z4rf"; depends=[]; }; genetics = derive2 { name="genetics"; version="1.3.8.1"; sha256="0gfbrpz0zp5bgw3s21wrhjfy70laif47wcrjrm6mjgs6xapiw790"; depends=[combinat gdata gtools MASS mvtnorm]; }; - genie = derive2 { name="genie"; version="1.0.0"; sha256="1g8iyls6fm6a7b08j1wc7qa5aksnfnarricwpl3csp9x8k5qifap"; depends=[Rcpp]; }; + genie = derive2 { name="genie"; version="1.0.2"; sha256="1sh6xlj347fqrgsxn5xgn4h8wfr58xd20idsfzhlywabkhkfbf6i"; depends=[Rcpp]; }; genlasso = derive2 { name="genlasso"; version="1.3"; sha256="1q4ybg8xzphnqwywwdb7i2q94dlxwpggvisjqqdj39jh2cabda57"; depends=[igraph MASS Matrix]; }; genoPlotR = derive2 { name="genoPlotR"; version="0.8.4"; sha256="06c4flddv83nwjagnszl0sv92mbxf91qml8awhhxnrs1bna04f1p"; depends=[ade4]; }; + genomeplot = derive2 { name="genomeplot"; version="1.0"; sha256="15v01ngxq7kxav1bhw1mvqradrmvwsad5xh9l5skivb5smh9795w"; depends=[ggplot2]; }; + genomicper = derive2 { name="genomicper"; version="1.6"; sha256="12msl6syw5a3dvxg9fr1yprcpb9qwn8v2dvkpxgagal11p9q1kx7"; depends=[DBI]; }; genpathmox = derive2 { name="genpathmox"; version="0.2"; sha256="1m08j10mrvkrnlgxbhjn3qmjz29p121fc4haww5qrici06nipfdm"; depends=[diagram mice plspm quantreg]; }; genridge = derive2 { name="genridge"; version="0.6-5"; sha256="0ms8n1yrga5qqg9ni41ifyw6320aajyrwvjh6d27q1k96j2dicp4"; depends=[car]; }; gensemble = derive2 { name="gensemble"; version="1.0"; sha256="0yyi7djzqx4yhxp6yy1rjgvzidjlna79ds89bgj6m6zj3aav6yw2"; depends=[]; }; + gensphere = derive2 { name="gensphere"; version="1.0"; sha256="184ky31l42k6x2di21hr2x1l35ksvr5yq8sr35mn642zckxx2y6g"; depends=[geometry mvmesh rgl SphericalCubature]; }; geo = derive2 { name="geo"; version="1.4-3"; sha256="0yxlafm99ypwf1700nh3hnnpndb6ghwwbi5sp6715zjbkkx94482"; depends=[mapdata maps]; }; geoBayes = derive2 { name="geoBayes"; version="0.3.3"; sha256="1jw0fj39gzf4cislc889ndgj34svcdxk0jz85ssk936g9gp0mm0c"; depends=[coda sp]; }; geoCount = derive2 { name="geoCount"; version="1.150120"; sha256="1kcjqls91r6p8ykn901c5p3v2lzbyainahhjpnr5c3a57v8s73ms"; depends=[Rcpp RcppArmadillo]; }; - geoR = derive2 { name="geoR"; version="1.7-5.1"; sha256="10rxlvlsg2avrf63p03a22lnq4ysyc4zq06mxidkjpviwk1kvzqy"; depends=[MASS RandomFields sp splancs]; }; + geoGAM = derive2 { name="geoGAM"; version="0.1-1"; sha256="04qgkbqjzvm9pxazj96716hf5cviy08a12r782id77l61dd9ya3s"; depends=[grpreg MASS mboost mgcv]; }; + geoR = derive2 { name="geoR"; version="1.7-5.2"; sha256="1sy968x154bsc3i3a6mxcwnyixcnmab5bc07dgibi9vzn0nkbbpb"; depends=[MASS RandomFields sp splancs]; }; geoRglm = derive2 { name="geoRglm"; version="0.9-8"; sha256="1zncqsw62m0p4a1wchhb8xsf0152z2xxk3c4xqdr5wbzxf32jhvh"; depends=[geoR sp]; }; geoaxe = derive2 { name="geoaxe"; version="0.1.0"; sha256="043y7kb24hp66j7pnpqsdixvdmppwp72y8i4f8q7xrkhaqlfb93v"; depends=[jsonlite rgeos sp]; }; - geocodeHERE = derive2 { name="geocodeHERE"; version="0.1.3"; sha256="10b1fgclv3199cglnip5xy0kgi3gi41q9npv7w3kajkrdknnxms4"; depends=[httr]; }; geoelectrics = derive2 { name="geoelectrics"; version="0.1.5"; sha256="0zy9m5k4b359mn29cd62cnwjm4fc19hy3l8p587yrrhsi20nbyna"; depends=[fields lattice rgl]; }; geofd = derive2 { name="geofd"; version="1.0"; sha256="16312g9mgw52mpsfky1j20zcqkkv91ihl0xhvv1bl80diffzf0zi"; depends=[fda geoR]; }; - geojsonio = derive2 { name="geojsonio"; version="0.1.6"; sha256="1wksx97djj6s9fh580j414icn9ava58gix3bnikm94m9bv7yj32f"; depends=[httr jsonlite magrittr maptools rgdal rgeos sp V8]; }; - geoknife = derive2 { name="geoknife"; version="1.2.1"; sha256="1azrprrcah2szc0nk0a3dsh87qlm9jbhm9lc8qbrjp5wary0bkdc"; depends=[curl httr sp XML]; }; + geohash = derive2 { name="geohash"; version="0.1.2"; sha256="1vwalnf5cbpbq5b68zc6qa8mm84v5zlb8s2pwg7j2f7s43y0mgwz"; depends=[Rcpp]; }; + geojson = derive2 { name="geojson"; version="0.1.0"; sha256="0br2vp9lzqmz84scscclcd3d7ysvrdk68fxbc05ywnlsimdp5fxd"; depends=[jqr jsonlite lazyeval magrittr protolite sp]; }; + geojsonio = derive2 { name="geojsonio"; version="0.3.2"; sha256="10rnp4ws3465p8jv6b15zbl662swd373nmlbxxk3n8dy7049qwpj"; depends=[httr jsonlite magrittr maptools readr rgdal rgeos sp V8]; }; + geojsonlint = derive2 { name="geojsonlint"; version="0.2.0"; sha256="05j7059s1hs8i2fkmkv0mqmda3bgk5zbyi865ab0vl361wiwmdya"; depends=[httr jsonlite jsonvalidate V8]; }; + geoknife = derive2 { name="geoknife"; version="1.5.2"; sha256="19adj5v14cxi32iadi4xlbg8f94vx4ail7454i4jj61i9a426ag1"; depends=[curl httr sp XML]; }; geomapdata = derive2 { name="geomapdata"; version="1.0-4"; sha256="1g89msnav87kim32xxbayqcx1v4439x4fsmc8xhlvq4jwlhd5xxw"; depends=[]; }; geometry = derive2 { name="geometry"; version="0.3-6"; sha256="0s09vi0rr0smys3an83mz6fk41bplxyz4myrbiinf4qpk6n33qib"; depends=[magic]; }; - geomnet = derive2 { name="geomnet"; version="0.0.1"; sha256="0yrlyhvqaab7y9ifrwmg93vq4fxp1lc87xxqhnkhp7qj9mhrpr7p"; depends=[ggplot2 network sna]; }; - geomorph = derive2 { name="geomorph"; version="3.0.0"; sha256="0yy4ln0g7wirbjzzh8c0cpnl6wsb0c0q82ic7kwjj0i213jxp2xd"; depends=[ape geiger jpeg Matrix phytools rgl]; }; + geomnet = derive2 { name="geomnet"; version="0.2.0"; sha256="0xanzx8p34bac4zcf9j69nivwhllvsrw7x70mzgl95jhg3gvv96a"; depends=[dplyr ggplot2 network plotly readr sna tidyr]; }; + geomorph = derive2 { name="geomorph"; version="3.0.3"; sha256="0nxbd2gsi9nd61blslq9jdg1y7n14yhdgkrnjg9cxqsmjg9d9gf4"; depends=[ape geiger jpeg Matrix rgl]; }; geonames = derive2 { name="geonames"; version="0.998"; sha256="1p0x260i383ddr2fwv54pxpqz9vy6vdr0lrn1xj7178vxic1dwyy"; depends=[rjson]; }; + geoparser = derive2 { name="geoparser"; version="0.1.0"; sha256="0gz808bab1axncccigs0ahvk3h2d3b77dwfhw2631fp6l706r839"; depends=[digest dplyr httr jsonlite lazyeval purrr stringr tidyr]; }; geophys = derive2 { name="geophys"; version="1.3-8"; sha256="0nw4m30r46892cf1n575jkfjgdjc14wic9xzmzcnskbk8cd50hp2"; depends=[cluster GEOmap RFOC RPMG RSEIS]; }; - georob = derive2 { name="georob"; version="0.2-3"; sha256="1amasfxjv3gd7199i3smk8dhgadw730l8cbj2pdpfwxwvwf2jlav"; depends=[constrainedKriging lmtest nleqslv nlme quantreg RandomFields robustbase snowfall sp]; }; + georob = derive2 { name="georob"; version="0.3-3"; sha256="0a4v0ik05bxzg9rxzwa1s2adm9ja9mzxh897kjxdk5qv9y5pgrkm"; depends=[constrainedKriging fields lmtest nleqslv nlme quantreg RandomFields robustbase snowfall sp]; }; + geosapi = derive2 { name="geosapi"; version="0.1-0"; sha256="04qab7qs22f1havziv5ynmrmdvi8539gjyfl83x5w5l44rjrx7lb"; depends=[httr openssl R6 XML]; }; geoscale = derive2 { name="geoscale"; version="2.0"; sha256="0gisds0in32xhw54fxfyxvwxgrfjs871wmqf6l915nr896rlx0bm"; depends=[]; }; geospacom = derive2 { name="geospacom"; version="0.5-8"; sha256="14qyjbq0n43c2zr9gp11gdqgarvmicx3gpq2ql2vjfzrmirxwjgg"; depends=[classInt geosphere maptools rgeos sp]; }; - geosphere = derive2 { name="geosphere"; version="1.5-1"; sha256="06qwpaahpj2czs7rwv0rwnwlqjb4xanxyi00ci13b4imwb3w51q8"; depends=[sp]; }; + geosphere = derive2 { name="geosphere"; version="1.5-5"; sha256="0vffppnyxp7ryg7rvsb1ww9z0ghh1vk20vzgw245pi2gfh9f0vwb"; depends=[sp]; }; geospt = derive2 { name="geospt"; version="1.0-2"; sha256="1814nn0naxvbn0bqfndpmizjbqcs6rm87g2s378axkn6qpii4bh8"; depends=[fields genalg gsl gstat limSolve MASS minqa plyr sgeostat sp TeachingDemos]; }; geosptdb = derive2 { name="geosptdb"; version="0.5-0"; sha256="0m0dlazhq2za71mi3q8mz2zvz7yrmda7lha02kh9n820bx89v33z"; depends=[FD fields geospt gsl limSolve minqa sp StatMatch]; }; - geostatsp = derive2 { name="geostatsp"; version="1.4.0"; sha256="0anwqdwpsnivk421gaq4hpkx8m47m7jwll7qr7lnnssyljld7djc"; depends=[abind Matrix numDeriv raster sp]; }; + geostatsp = derive2 { name="geostatsp"; version="1.4.4"; sha256="0gvxbrr52v8g0a2mbzc8754z5ycpgz7hjfgi7xirn10iv99kwgjz"; depends=[abind Matrix numDeriv raster sp]; }; geotech = derive2 { name="geotech"; version="1.0"; sha256="18s7w6h1svc4n1hcgj5njfkf3nflkc53cdwsq5112p3442rlz33f"; depends=[]; }; geotools = derive2 { name="geotools"; version="0.1"; sha256="0d0vf9dvrrv68ivssp58qzaj8vra26ms33my097jmzmgagwy1spd"; depends=[]; }; - geotopbricks = derive2 { name="geotopbricks"; version="1.3.7.2"; sha256="15z4969vgh0jwksqrjsd5m598xbz2ppf1ymvf80id4h0grzh08l5"; depends=[raster rgdal stringr zoo]; }; - geozoo = derive2 { name="geozoo"; version="0.5.0"; sha256="1a91x4mdmha40xs2pgwbycni10yhavwmb2mwm0pjj1gg5j2d82ri"; depends=[bitops]; }; - gesca = derive2 { name="gesca"; version="1.0.1"; sha256="08yprp486gw6vgh5rc7nl1myx57fs1y7a36g01i7vd0g1ikcpqwj"; depends=[]; }; - gesis = derive2 { name="gesis"; version="0.1"; sha256="0kvmlkq2cgxrjdq2dyjqs1pv875hdbapsygxrp0i8ab0fqirbrip"; depends=[RSelenium]; }; + geotopbricks = derive2 { name="geotopbricks"; version="1.4"; sha256="1jqkdhljf0syfvkcy7wgaccrhp3hfx0kymw3vyckhmf1dkwbjvyj"; depends=[raster rgdal stringr zoo]; }; + geozoo = derive2 { name="geozoo"; version="0.5.1"; sha256="0g91yhg7zw1bp0lxxblr2irckjg2rl4pg1vgglccnmxkzn0ji2qi"; depends=[bitops]; }; + gepaf = derive2 { name="gepaf"; version="0.1.0"; sha256="0ld7r0dkap7bpmb2fc8x0pzffvnlzp2q1bndx4l2ffiyygsq6f72"; depends=[bitops]; }; + gesca = derive2 { name="gesca"; version="1.0.3"; sha256="1xr9kls6wdd1lnk4nrwix5p0dl93rl1zd3x88c0qyxzp11m2pcsf"; depends=[]; }; + gesis = derive2 { name="gesis"; version="0.2.1"; sha256="1cdmhfdjiwsp48a7b0r1mnagnymz606mkzpam9fsvfl72vzji2w7"; depends=[httr rvest xml2]; }; + getCRUCLdata = derive2 { name="getCRUCLdata"; version="0.1.4"; sha256="1j5l4ig1cwxbl2si0kq4b7jv5r9ma4df2zbsw81z9lnkykc638g5"; depends=[curl dplyr plyr purrr raster tidyr]; }; getMet = derive2 { name="getMet"; version="0.3.2"; sha256="0j1h1vy8rd7czpnb4msdb9k560pnh7kjkmpqqwzwin2ms1c0mggb"; depends=[EcoHydRology jsonlite]; }; - getPass = derive2 { name="getPass"; version="0.1-0"; sha256="0jqlf4hl7g7jrwjm2y0syxm0csya2q3g2jlgsq9xfnyg56wa86qw"; depends=[rstudioapi]; }; + getPass = derive2 { name="getPass"; version="0.1-1"; sha256="14s8s3zrl5iwr7pw000b8mwxy17caf42yl0lf56b3qa71ifzxbnc"; depends=[rstudioapi]; }; + getlandsat = derive2 { name="getlandsat"; version="0.1.0"; sha256="0h2520r5sqyzsajqw2i86byw9zm5za27mhjkrzzw5vr5sh1vdiwb"; depends=[data_table httr rappdirs readr tibble xml2]; }; getopt = derive2 { name="getopt"; version="1.20.0"; sha256="00f57vgnzmg7cz80rjmjz1556xqcmx8nhrlbbhaq4w7gl2ibl87r"; depends=[]; }; - gets = derive2 { name="gets"; version="0.6"; sha256="0x6f7nh4a5yzdwh9pfpx2gzqng1lpappa2m0729419v11rzwmrp8"; depends=[zoo]; }; + gets = derive2 { name="gets"; version="0.12"; sha256="0prq1w5z2cfkg0k8hj2i660yrky8l74rrf7bcjpivc5ml2ssh9z7"; depends=[zoo]; }; gettingtothebottom = derive2 { name="gettingtothebottom"; version="3.2"; sha256="1cz2vidh7k346qc38wszs2dg6lvya249hvcsn6zdpbx0c0qs3y72"; depends=[ggplot2 Matrix]; }; + gettz = derive2 { name="gettz"; version="0.0.3"; sha256="1i06nfm824131q8lwwhrbzg2g9lbnmyp8k57w2vag7v8jj5rdrda"; depends=[]; }; gfcanalysis = derive2 { name="gfcanalysis"; version="1.4"; sha256="1hjgbiakf01mmaa2jhlnymcsjsj1zssay44p4sdxxxzpx4szs3vv"; depends=[animation geosphere ggplot2 plyr raster rasterVis RCurl rgdal rgeos sp stringr]; }; - ggExtra = derive2 { name="ggExtra"; version="0.3.4"; sha256="1lbwxmvxhfybywpzyh9h4qg962xckckfplv37w587fxa66kvs5xb"; depends=[ggplot2 gridExtra]; }; + gfer = derive2 { name="gfer"; version="0.1.3"; sha256="1s6s0ng940spj1056z8jd0p3i34kzr1skzjr8w64x20kps1rvl9l"; depends=[httr jsonlite rvest stringi V8 xml2]; }; + ggCompNet = derive2 { name="ggCompNet"; version="0.1.0"; sha256="1199n4s2rh5zg001l3j8wmc6fxkbkk5vzp4q5kg661k3khgx0hd5"; depends=[dplyr geomnet GGally ggmap ggnetwork ggplot2 gridExtra igraph network progress readr scales sna tidyr tnet]; }; + ggExtra = derive2 { name="ggExtra"; version="0.6"; sha256="1f91hvay4r0ikn87n6grxl0s7c542rxg2h61s3k8qzrzshy1wnkj"; depends=[colourpicker ggplot2 gtable miniUI shiny shinyjs]; }; ggROC = derive2 { name="ggROC"; version="1.0"; sha256="0p9gdy7ia59d5m84z9flz5b03ri7nbigb3fav2v2wrml300d24vn"; depends=[ggplot2]; }; - ggRandomForests = derive2 { name="ggRandomForests"; version="1.2.1"; sha256="023badp3frvdmdq5acny4k6vq5xl78hsvr429060g9a8alrz51qy"; depends=[ggplot2 randomForestSRC survival tidyr]; }; - ggThemeAssist = derive2 { name="ggThemeAssist"; version="0.1.0"; sha256="18pmqwyk8sbbj1j55ixfda4hfss83lcvcgz2nkppjdvaifad2lyh"; depends=[formatR ggplot2 miniUI rstudioapi shiny]; }; - ggalt = derive2 { name="ggalt"; version="0.1.1"; sha256="05jpvyl19ppyzprzprsp66aardn90fyw7q837vb56s49ivim7sk1"; depends=[ash dplyr ggplot2 gtable KernSmooth maps MASS proj4 RColorBrewer scales]; }; - ggbeeswarm = derive2 { name="ggbeeswarm"; version="0.5.0"; sha256="0h8nl56pld7rlhw381pzngx8mznxr9d5vs0lwcz2j6sy9db2y53i"; depends=[beeswarm ggplot2 vipor]; }; + ggRandomForests = derive2 { name="ggRandomForests"; version="2.0.1"; sha256="0f8m0j79d8wbac14zk1s8812rz6vgf04bz1iqq8p4d3sxwnvaj7q"; depends=[ggplot2 randomForest randomForestSRC survival tidyr]; }; + ggThemeAssist = derive2 { name="ggThemeAssist"; version="0.1.5"; sha256="1biw91a8p13h62v4w3yim6ghr98khmyhb3qd0h04asf91vvmpxbv"; depends=[formatR ggplot2 miniUI rstudioapi shiny]; }; + ggalt = derive2 { name="ggalt"; version="0.4.0"; sha256="0ssa274d41vhd6crzjz7jqzbwgnjimxwxl23p2cx35aqs5wdfjpc"; depends=[ash dplyr extrafont ggplot2 gtable KernSmooth maps MASS plotly proj4 RColorBrewer scales tibble]; }; + ggbeeswarm = derive2 { name="ggbeeswarm"; version="0.5.3"; sha256="1jgp55rvmzc4agcrlsjn8m5lk85di9c4wj94xzikqkql4lvq3qpd"; depends=[beeswarm ggplot2 vipor]; }; ggcorrplot = derive2 { name="ggcorrplot"; version="0.1.1"; sha256="04jq1qpsgy8bgpilp1a02va4vz0adkjwrz9znmhv54q81qiv7h51"; depends=[ggplot2 reshape2]; }; - ggdendro = derive2 { name="ggdendro"; version="0.1-18"; sha256="13a807zgjjr4808h5bk2wkwmvx9v8nzl3zibd19gd5ah4mhmfx2z"; depends=[ggplot2 MASS]; }; - gge = derive2 { name="gge"; version="1.0"; sha256="06a9czn3r76rg85z84177j3pd4mhsrskim1bxj3phc866chwj1wb"; depends=[reshape2]; }; - ggenealogy = derive2 { name="ggenealogy"; version="0.1.0"; sha256="0shy6ylrx49yccyydhahqk1nnljqgf1cm11fl4cmb44la5zd3wjn"; depends=[ggplot2 igraph plyr reshape2]; }; - ggfortify = derive2 { name="ggfortify"; version="0.1.0"; sha256="0q4crp4syk2b48m2q38pc852y2bdy97spqrcjnl2q7yb3il1r90z"; depends=[dplyr ggplot2 gridExtra proto scales tidyr]; }; - ggiraph = derive2 { name="ggiraph"; version="0.2.0"; sha256="0z8gvqphww24w70hkvqvjh4afn5nk6blmvsvhghjhzgqgdwk1yyx"; depends=[ggplot2 htmltools htmlwidgets plyr rvg xml2]; }; + ggdendro = derive2 { name="ggdendro"; version="0.1-20"; sha256="1zzq1hxd0d1qa5hrzwfkdw6fzscpcafbwbpkrb62dm559y8awp0j"; depends=[ggplot2 MASS]; }; + ggdmc = derive2 { name="ggdmc"; version="0.1.3.5"; sha256="0idsmviv1znkgi5yzwbj7wnn7hy9jk83jwjzsh7h205gbkzqjn90"; depends=[coda ggmcmc ggplot2 ggthemes gridExtra loo Rcpp RcppArmadillo rtdists]; }; + gge = derive2 { name="gge"; version="1.1"; sha256="04212spczyr2vqxki0n82ml26mgiq29i6mxyh06v42lqpg39sx19"; depends=[reshape2]; }; + ggenealogy = derive2 { name="ggenealogy"; version="0.3.0"; sha256="169zkcp13g0ll9941a7hh31fll0mavnkb6fd3kvkibdjm621ymyh"; depends=[ggplot2 igraph plotly plyr reshape2 tibble]; }; + ggforce = derive2 { name="ggforce"; version="0.1.1"; sha256="0y49anv5sj1qn1ifcxg1krkkv4z3dlan5lya36vfmzzdamfgq5p6"; depends=[dplyr ggplot2 gtable lazyeval MASS Rcpp scales tweenr units]; }; + ggfortify = derive2 { name="ggfortify"; version="0.4.1"; sha256="19jwcz1z6g7l65l6cj8zspypfb86pn3x18vzdcgf932n14g646d2"; depends=[dplyr ggplot2 gridExtra scales tibble tidyr]; }; + ggghost = derive2 { name="ggghost"; version="0.2.1"; sha256="0kvsjadxxdf6yvzk4a6yqkg02q1ysslvf3m0a369bdim396z4hnv"; depends=[animation ggplot2]; }; + ggguitar = derive2 { name="ggguitar"; version="0.1.1"; sha256="1lmfs54h91gzcxin37v4flkywbq3fs648mm1h9ak03xlj5nagzsi"; depends=[dplyr ggplot2 gridExtra lazyeval readr tibble]; }; + gghalfnorm = derive2 { name="gghalfnorm"; version="1.1.1"; sha256="1h8qkagsfhk5gba7jgzwrvc6hrc492pp34kmzgr3n8d8bjzj45a3"; depends=[ggplot2 ggrepel]; }; + ggimage = derive2 { name="ggimage"; version="0.0.1"; sha256="1jy4zg3ipbqsj6kj87crkb26wjlwcbipkh3yjhp8fsx4cqdcdrz7"; depends=[EBImage ggplot2]; }; + ggiraph = derive2 { name="ggiraph"; version="0.3.2"; sha256="07r5kf2ky6b09hvd3zdahl9b9v2509k4yxf10mw6hag2bb4lmgcz"; depends=[ggplot2 htmltools htmlwidgets plyr rvg xml2]; }; + ggiraphExtra = derive2 { name="ggiraphExtra"; version="0.1.0"; sha256="09fiwkaai4sy5kxy4p0c4ldb8ya63czff53hbm6d8fm858fw2byw"; depends=[ggiraph ggplot2 mapproj mgcv moonBook mycor plyr reshape2 scales XML]; }; gglasso = derive2 { name="gglasso"; version="1.3"; sha256="0qqp5zak4xsakhydn9cfhpb19n6yidgqj183il1v7yi90qjfyn66"; depends=[]; }; + gglogo = derive2 { name="gglogo"; version="0.1.3"; sha256="1dq0bixz44p32kpma5wrqjqklal2ipjmqdwqap0xch542drlpqbn"; depends=[dplyr ggplot2 jpeg knitr magrittr plyr purrr reshape2]; }; + ggloop = derive2 { name="ggloop"; version="0.1.0"; sha256="0jpbgb16jfsv557zvishln98y7nd6p1ryp6hxkrkmhp9p35vzvc0"; depends=[assertthat ggplot2 lazyeval magrittr plyr]; }; ggm = derive2 { name="ggm"; version="2.3"; sha256="1n4y459x2i0jil8chjjqqjs28a8pzfxrws2fcjkg3il7zy0zwbw3"; depends=[igraph]; }; ggmap = derive2 { name="ggmap"; version="2.6.1"; sha256="0mssb09w818jv58h7mly9y181pzv22sgcd4a079cfpq04bs0wigw"; depends=[digest geosphere ggplot2 jpeg mapproj plyr png proto reshape2 RgoogleMaps rjson scales]; }; - ggmcmc = derive2 { name="ggmcmc"; version="0.8"; sha256="12dhhvqbmj20fk3c7h7qdvgc2hn83kb4gqwflsvgs7s8dmcdgy4i"; depends=[dplyr GGally ggplot2 tidyr]; }; - ggparallel = derive2 { name="ggparallel"; version="0.1.2"; sha256="05l58qr5mxkkmwl444n0v27r527z64hxkh106am3aj7ml916z0qc"; depends=[ggplot2 plyr reshape2]; }; - ggplot2 = derive2 { name="ggplot2"; version="2.1.0"; sha256="0s9rvp0f736ji6p9xpxq54agxf95pjkql4sj7ag0hv2xhnp27hzj"; depends=[digest gtable MASS plyr reshape2 scales]; }; + ggmcmc = derive2 { name="ggmcmc"; version="1.1"; sha256="09b89cnmdmiwy18igzxjiq60l1xqjh022fw3rhd5kx7lnh02yza3"; depends=[dplyr GGally ggplot2 tidyr]; }; + ggmosaic = derive2 { name="ggmosaic"; version="0.1.2"; sha256="1mxa09914j9i8b14brl70a7j7ngycj8wkil3sqkd4jwplaszvhsn"; depends=[dplyr ggplot2 gridExtra NHANES plotly productplots purrr tidyr]; }; + ggnetwork = derive2 { name="ggnetwork"; version="0.5.1"; sha256="13qisn4msjzkpcmn7rh2c4ymqfxp9bayrvqngp9pysfmr6wvc6ia"; depends=[ggplot2 ggrepel network sna]; }; + ggparallel = derive2 { name="ggparallel"; version="0.2.0"; sha256="0zxaff0jbqkbavsmh1yyp3vdrxsam6a66hjw8lamv9pksdw1s2wf"; depends=[ggplot2 plyr reshape2]; }; + ggplot2 = derive2 { name="ggplot2"; version="2.2.1"; sha256="0543782ddv2hp6s0l702mnxfg8n7a6qlbm8bm55x22hnqgz8kg2z"; depends=[digest gtable lazyeval MASS plyr reshape2 scales tibble]; }; ggplot2movies = derive2 { name="ggplot2movies"; version="0.0.1"; sha256="067ld6djxcpbliv70r2c1pp4z50rvwmn1xbvxfcqdi9s3k9a2v8q"; depends=[]; }; - ggpmisc = derive2 { name="ggpmisc"; version="0.2.7"; sha256="0m1fbxcizmnp0mild77ldfycz9yiq9d5zvyk1vvpx5ng79lf6lz9"; depends=[dplyr ggplot2 lubridate polynom splus2R xts zoo]; }; + ggpmisc = derive2 { name="ggpmisc"; version="0.2.14"; sha256="0747jmf8zvqc6zzglbpr2vizcy905zgc9hgdabgdkg4zhhmlcqys"; depends=[broom dplyr ggplot2 lubridate MASS plyr polynom splus2R tibble xts zoo]; }; + ggpolypath = derive2 { name="ggpolypath"; version="0.1.0"; sha256="0g9zfal3vqcx16fi4abxm6l5sam475lk1f6bdik487wc2v0dkq83"; depends=[ggplot2]; }; + ggpubr = derive2 { name="ggpubr"; version="0.1.1"; sha256="1r1hhlw2zz1n1grwddd45sssdgrv43wf4dj9vjdryssz44rvxs85"; depends=[ggplot2 ggrepel ggsci plyr]; }; ggraptR = derive2 { name="ggraptR"; version="0.1"; sha256="060ksjq790rvv9kyyf6v6z0irawlw3hxaq8n0dvzmfkw58pk5fpd"; depends=[dplyr DT futile_logger ggplot2 ggthemes shiny shinyBS shinyjs]; }; - ggrepel = derive2 { name="ggrepel"; version="0.5"; sha256="04kqmvr122lhb79y2wnwfx249sh8hkfd0p4gx13mb52qgzzd1f4r"; depends=[ggplot2 Rcpp]; }; - ggseas = derive2 { name="ggseas"; version="0.3.0"; sha256="08536kp45alhdm6r3vl7zc62by2q0rfmr67av9f664x6fx4q8xdi"; depends=[ggplot2 seasonal zoo]; }; - ggsn = derive2 { name="ggsn"; version="0.3.0"; sha256="02a4p15mqvfjxicwimp00nmd4bm7ydqxppxkxr11n2aqng9fjyrn"; depends=[ggplot2 maptools png]; }; - ggspectra = derive2 { name="ggspectra"; version="0.1.6"; sha256="1wvw9yjdb3jysg0nc6nfvhdbfzqh9i88rzin0bdw93gfq6fv969j"; depends=[dplyr ggplot2 lubridate photobiology photobiologyWavebands scales tidyr]; }; - ggswissmaps = derive2 { name="ggswissmaps"; version="0.0.8"; sha256="1y61xdhb67w0dmjmxa40pbzfjj6bpik477jf3dm61qjnfp4a1l4l"; depends=[ggplot2]; }; - ggtern = derive2 { name="ggtern"; version="2.1.0"; sha256="0icmw8cfm0ciay7vw7gfifq7mvccfq00qx167dh9nai12kkgnr0c"; depends=[compositions ggplot2 gridExtra gtable latex2exp lattice MASS plyr proto scales]; }; - ggthemes = derive2 { name="ggthemes"; version="3.0.2"; sha256="0nx4sswvzr8qr54pmxk7qqj85ayajpiakzz33sf27s622bh0gndd"; depends=[assertthat colorspace ggplot2 scales]; }; - ggvis = derive2 { name="ggvis"; version="0.4.2"; sha256="07arzhczvh2sgqv9h30n32s6l2a3rc98rid2fpz6kp7vlin2pk1g"; depends=[assertthat dplyr htmltools jsonlite lazyeval magrittr shiny]; }; - ghit = derive2 { name="ghit"; version="0.2.5"; sha256="1164j18hh1jaziirvlrc0prmib0ph4dw16krpksxxymy6xxsvi9s"; depends=[git2r]; }; - ghyp = derive2 { name="ghyp"; version="1.5.6"; sha256="0y3915jxb2rf01f7r6111p88ijhmzyz4qsmy7vfijlilkz0ynn20"; depends=[gplots numDeriv]; }; + ggrepel = derive2 { name="ggrepel"; version="0.6.5"; sha256="0lm78662p1iajkcvq82g08zsv3s4lfmkpggg1wk9wpvmk78yj2in"; depends=[ggplot2 Rcpp scales]; }; + ggsci = derive2 { name="ggsci"; version="2.0"; sha256="1045yi825lynw074cqi7r596ldbn7snj0rzdqcb5iwl5cn2s7gcw"; depends=[ggplot2 scales]; }; + ggseas = derive2 { name="ggseas"; version="0.5.1"; sha256="1r23j701rvia49si42fbi6zws7x9r92h1bcp0a15h28hpl7zlp7l"; depends=[ggplot2 seasonal zoo]; }; + ggsn = derive2 { name="ggsn"; version="0.3.1"; sha256="1q1bba9pcr51m7hxz07d0ycbl93ln4cgkkw17acbfipmbaack5f0"; depends=[ggplot2 maptools png]; }; + ggspectra = derive2 { name="ggspectra"; version="0.2.0"; sha256="0x0q7sa3i4z52wifbpi5q7hwqw79cz599f3mcln8qkd8fkz7fg96"; depends=[dplyr ggplot2 ggrepel lubridate photobiology photobiologyWavebands reshape2 scales tidyr]; }; + ggstance = derive2 { name="ggstance"; version="0.3"; sha256="0sr84nasr8x8ib3mdsjck73gbfg9xba50s5nxdij0ah9xqnpyhpi"; depends=[ggplot2 lazyeval plyr purrr]; }; + ggswissmaps = derive2 { name="ggswissmaps"; version="0.1.1"; sha256="0is48x6k2p5dgj9q4km0dv33a9pcpfhlai9vz295y3acpyrkmnn4"; depends=[ggplot2]; }; + ggtern = derive2 { name="ggtern"; version="2.2.0"; sha256="0ddcbbgp8ni3zbz4ailqx79i16aa2x4z4gvz55f0b731bilczw86"; depends=[compositions ggplot2 gridExtra gtable latex2exp lattice MASS plyr proto scales]; }; + ggthemes = derive2 { name="ggthemes"; version="3.4.0"; sha256="1jj8lp7jbk3489kpgbw4b5phpn01gkfmksc21c6sn3x6wmzyn6hs"; depends=[assertthat colorspace ggplot2 scales]; }; + ggvis = derive2 { name="ggvis"; version="0.4.3"; sha256="1p7c8f83da30grj5n0v80p5djp6z0r62z5zqpv2a3ahn61w1gm9l"; depends=[assertthat dplyr htmltools jsonlite lazyeval magrittr shiny]; }; + ghit = derive2 { name="ghit"; version="0.2.15"; sha256="07f7bz0n2bzs3m3q1hsld15n10nkk7ziwl37lxsf2gh9yv7xvfb3"; depends=[git2r]; }; + ghyp = derive2 { name="ghyp"; version="1.5.7"; sha256="195hsskh2ykafqr93f675xqsmhbrki3abi61hk78bzy09n1d4jfk"; depends=[gplots numDeriv]; }; giRaph = derive2 { name="giRaph"; version="0.1.2"; sha256="137c39fz4vz37lpws3nqhrsf4qsyf2l0mr1ml3rq49zz4146i0rz"; depends=[]; }; gibbs_met = derive2 { name="gibbs.met"; version="1.1-3"; sha256="1yb5n8rkphsnxqn8rv8i54pgycv9p7x1xhinx4l5wzrds3xhf2dc"; depends=[]; }; - gimme = derive2 { name="gimme"; version="0.1-6"; sha256="164ayfhf532iv0ja87z5aigrbfngxs8naxdnh041lw431mchvrp6"; depends=[doParallel doSNOW foreach gWidgets2 igraph lavaan MASS qgraph snow]; }; - gimms = derive2 { name="gimms"; version="0.5.1"; sha256="149jk2j2vzvcn4pk78ha2vbjwq24kd42mvhkhw1ihmnjg6yjw7j3"; depends=[doParallel foreach Kendall raster zyp]; }; + gimme = derive2 { name="gimme"; version="0.2-0"; sha256="0x2j4041rah6bi99z8syypg3w8zzkdkxymmdz33rgc7azx799cps"; depends=[gWidgets igraph lavaan qgraph]; }; + gimms = derive2 { name="gimms"; version="1.0.0"; sha256="0f959gr4nzf9p2gpvdrzlndp24g2hhzc0wbkgpbs056wp8ij0mws"; depends=[Kendall raster RCurl zyp]; }; gistr = derive2 { name="gistr"; version="0.3.6"; sha256="1rajdfb8zkx444v89iapzrdad8y81rhd9q9nwcxw03jig4xm48mb"; depends=[assertthat dplyr httr jsonlite knitr magrittr rmarkdown]; }; - git2r = derive2 { name="git2r"; version="0.14.0"; sha256="0jkkrggffpflaaw0gn2hnm1wz83xs31amriim481g73zf30g2bpr"; depends=[]; }; + git2r = derive2 { name="git2r"; version="0.18.0"; sha256="0bgzdsdi9n6l8pchivs6a2g4ksa56qs8hygpyv2c0ndqmx4jxcwi"; depends=[]; }; + gitgadget = derive2 { name="gitgadget"; version="0.2.1"; sha256="02jmp5lnk156sfqlv91jn42xds98ihya1x2f97cfwpzlas5qrxky"; depends=[curl dplyr jsonlite miniUI rstudioapi shiny]; }; + githubinstall = derive2 { name="githubinstall"; version="0.2.1"; sha256="0vcc1s4ywaz8fjsg99knlxms4505wpvl08g48ndxcp3fqzvfc8i7"; depends=[curl data_table devtools httr jsonlite]; }; gitlabr = derive2 { name="gitlabr"; version="0.6.4"; sha256="1x1s2wcfgzxbqjrrn9f5003q5x4ri19r6gbkd55qgqxnc1cg27gb"; depends=[base64enc dplyr functional httr magrittr stringr]; }; gitter = derive2 { name="gitter"; version="1.1.1"; sha256="10m4rs6mhg7xn8dfd41ai0bnn5bnxn6cgqip22hrrpj0i2lzky6l"; depends=[EBImage ggplot2 jpeg logging PET tiff]; }; - gjam = derive2 { name="gjam"; version="1.0"; sha256="1g85syk4cjrgvqwfjh63wzib9h7qpfg4l5qfa8lq9qz6m6g36gvb"; depends=[Rcpp RcppArmadillo]; }; - gkmSVM = derive2 { name="gkmSVM"; version="0.65"; sha256="0k51mpcrddvxbvisn8aiwyh3iy1kwy7h0x1zl46wldy7s33d3576"; depends=[kernlab Rcpp ROCR seqinr]; }; - glamlasso = derive2 { name="glamlasso"; version="1.0"; sha256="050xa2s60zm59p7ydxm3gkm2k6lhkdqkby212f5f1dd89q53gdxp"; depends=[Rcpp RcppArmadillo]; }; - glarma = derive2 { name="glarma"; version="1.4-0"; sha256="1fwygp3baj4a5kfla0phaama81ry5s3i4vdx9hfj4y9m5wzg87dv"; depends=[MASS]; }; + givitiR = derive2 { name="givitiR"; version="1.3"; sha256="0y2slhxhj7k413kjaydin9hq3x2xgx4cgjshdplwnmg3x2nakn31"; depends=[alabama rootSolve]; }; + gjam = derive2 { name="gjam"; version="2.1.1"; sha256="12r7amkzvklj4b52199hwwxgimvqgnbnylzdkxgfql9n8zcbgx3j"; depends=[MASS RANN Rcpp RcppArmadillo]; }; + gk = derive2 { name="gk"; version="0.4.0"; sha256="0nm7aam78mn0a7mvqk1cy7kw4aps7rbx26c85jlklknjyic99cav"; depends=[]; }; + gkmSVM = derive2 { name="gkmSVM"; version="0.71.0"; sha256="1zpxgxmf2nd5j5wn00ps6kfxr8wxh7d1swr1rr4spq7sj5z5z0k0"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges IRanges kernlab Rcpp ROCR rtracklayer S4Vectors seqinr]; }; + glamlasso = derive2 { name="glamlasso"; version="2.0.1"; sha256="1x87nv29r309l539qccbcll4kn889sdds6gvrhyvw68rs370pn2l"; depends=[Rcpp RcppArmadillo]; }; + glarma = derive2 { name="glarma"; version="1.5-0"; sha256="1afcccjayz6sj39mcg9h54d7dd1as8l63nxfw17bdh18zidr6ghi"; depends=[MASS]; }; glasso = derive2 { name="glasso"; version="1.8"; sha256="0gcapw7kyxb19wvdyxq1vsmc5j7yyd0rvqxs2i71k31q352sg6zw"; depends=[]; }; glba = derive2 { name="glba"; version="0.2"; sha256="0ckcz6v6mfbv34s8sp086czhb5l58sky79k84332rrz6wj47p3md"; depends=[]; }; glcm = derive2 { name="glcm"; version="1.6.1"; sha256="0xzfhafc7326v3g1xngp584039iknw3q3bcx8f0j4ig125in7sxk"; depends=[Rcpp RcppArmadillo]; }; - gld = derive2 { name="gld"; version="2.3.2"; sha256="15l6lg49rypasglc1y8mjp5a6s7blymbyclavhyjs0nkaq5flrb7"; depends=[e1071]; }; + gld = derive2 { name="gld"; version="2.4.1"; sha256="0ycm3w8s5bm5w2lqy0qa877cwjcwc9x1zyyyrknwwjjxip250iaw"; depends=[e1071 lmom]; }; gldist = derive2 { name="gldist"; version="2160.2"; sha256="1dcf3pb4xqvhqj4m3xc3ihzjbzxjspjrnc8819hmlnmdd0csghmx"; depends=[]; }; - glinternet = derive2 { name="glinternet"; version="1.0.0"; sha256="0aa75xq2w64iknbyl6qw9ckk8v64a96xz0ar1mbqd8zhx0xvibyy"; depends=[]; }; + glinternet = derive2 { name="glinternet"; version="1.0.3"; sha256="1f3c4c8jjfslp5wc4mc3sc64qpin8bswz1fnv5zqg8dr4j8afq10"; depends=[]; }; gllm = derive2 { name="gllm"; version="0.35"; sha256="1m9asamh2yha9q8mrllvvc9qj2im6cspvfpafzc8krmh17zq4ins"; depends=[]; }; glm_ddR = derive2 { name="glm.ddR"; version="0.1.0"; sha256="0siwy8jx0r0135sm8gyf8g7w05r3zlq6bns5f2s348njk19da9mn"; depends=[ddR Matrix]; }; + glm_predict = derive2 { name="glm.predict"; version="2.4-0"; sha256="10cpbl25csfs2ng7jj7hcfwl58akbx5dsdv1qlgbnvhf9rmlblww"; depends=[iterpc MASS nnet]; }; glm2 = derive2 { name="glm2"; version="1.1.2"; sha256="1x9pq2ddsz9al8w044qch34s3fahca63dz85lvm5qn16945ccw1s"; depends=[]; }; + glmBfp = derive2 { name="glmBfp"; version="0.0-48"; sha256="1r8mc55v717g4666f07hkc13v9vhj96n7xvn2r3crjndq3w5x3yn"; depends=[coda Rcpp RcppArmadillo rms Runuran statmod survival]; }; + glmbb = derive2 { name="glmbb"; version="0.2"; sha256="1ifiiixj2ip8mqdk3riaf1y60sv1asr0kmcmbjnhpwxd46k8kkpw"; depends=[digest]; }; glmc = derive2 { name="glmc"; version="0.2-4"; sha256="03m1ym9w0b0gqib13pnh1yrjijlcwsn5lijg0nsr4hd6gxw29cla"; depends=[emplik]; }; glmdm = derive2 { name="glmdm"; version="2.60"; sha256="09vljki24fccqkvxkmg2i6a8pxqhfwm155b41m2q51lqaq29bfw7"; depends=[]; }; glmgraph = derive2 { name="glmgraph"; version="1.0.3"; sha256="16sq6i7kbw20nvwikpa02z3pb7wqw3270j6ss7f8sgf548skhmx0"; depends=[Rcpp RcppArmadillo]; }; glmlep = derive2 { name="glmlep"; version="0.1"; sha256="0jnm3cf2r9fyncxzpk87g4pnxbryqcxxrc5y2a80pv48al3sxlzk"; depends=[]; }; - glmm = derive2 { name="glmm"; version="1.0.4"; sha256="0mcdy8aa5dlscrdahnd7jn9ip28jzipp4imv6cyk8fkkmiy60qhx"; depends=[Matrix mvtnorm trust]; }; - glmmBUGS = derive2 { name="glmmBUGS"; version="2.3"; sha256="1j96c1c2lqplhjvyigpj494yxj85bpmc7cnd1hl1rc8b552jr192"; depends=[abind MASS]; }; - glmmGS = derive2 { name="glmmGS"; version="0.5-1"; sha256="1aqyxw3nrjri8k8wlwvddy25dj7mjqndssd5p5arax8vaqgrdnjz"; depends=[]; }; - glmmLasso = derive2 { name="glmmLasso"; version="1.4.1"; sha256="162b3mmx6997hlx4fpd3wpvwq5axzx2fvywljsn05a10c6cfszvc"; depends=[Matrix minqa]; }; - glmmML = derive2 { name="glmmML"; version="1.0"; sha256="0b1q5mj325xga3lfks28r03363bjfa31rlgjzwk4s0a6g21bdl4a"; depends=[]; }; + glmm = derive2 { name="glmm"; version="1.1.1"; sha256="0jswwrdc2k99kcqnbh1dg5j3z98l4x8v5kfdlxk5yxfi1ik6r3p5"; depends=[Matrix mvtnorm trust]; }; + glmmBUGS = derive2 { name="glmmBUGS"; version="2.4.0"; sha256="1clnnf0ja2xiqdgi2f1xs04hhi13rnp8jzzdjncbqbdzk2ic3ynl"; depends=[abind MASS sp]; }; + glmmLasso = derive2 { name="glmmLasso"; version="1.4.4"; sha256="0f03zj1hbxp4cpn0ffwisf52gcfdyp7sbm49zxi7g7xpv7v87pja"; depends=[Matrix minqa]; }; + glmmML = derive2 { name="glmmML"; version="1.0.1"; sha256="0lfxhx0mr0ph8fg28nnb37p2lndjayzhv07wksx9ic8gpi0cm6my"; depends=[]; }; + glmmTMB = derive2 { name="glmmTMB"; version="0.1.1"; sha256="1ckij5jrqijwljqkj624q6li0bv8vxb3aglwbfi034zc0iwiba1b"; depends=[lme4 Matrix nlme RcppEigen TMB]; }; glmmsr = derive2 { name="glmmsr"; version="0.1.1"; sha256="07z4j7845hz3hcv438njnqf1yfp8prqby03h3s1ql1w8d342670i"; depends=[BH lme4 Matrix R6 Rcpp RcppEigen]; }; glmnet = derive2 { name="glmnet"; version="2.0-5"; sha256="1cbpzmbv837fvq88rgn6mgzgr9f1wqp9fg8gh2kkmngvr1957a9c"; depends=[foreach Matrix]; }; glmnetcr = derive2 { name="glmnetcr"; version="1.0.2"; sha256="1pyg23hdqksiaqdcrsaqz9vb7mgclm41hh0vb7ndkdv284bzzlbz"; depends=[glmnet]; }; @@ -4527,62 +5649,80 @@ in with self; { globalGSA = derive2 { name="globalGSA"; version="1.0"; sha256="1f3xv03m6g2p725ff0xjhvn2xcfm7r7flyrba080i4ldy6fd8jg8"; depends=[]; }; globalOptTests = derive2 { name="globalOptTests"; version="1.1"; sha256="0yf4p82dpjh36ddpfrby7m3fnj2blf5s76lncflch917sq251h4f"; depends=[]; }; globalboosttest = derive2 { name="globalboosttest"; version="1.1-0"; sha256="1k7kgnday27sn6s1agzlj94asww81655d2zprx6qg7liv677bxvf"; depends=[mboost survival]; }; - globals = derive2 { name="globals"; version="0.6.1"; sha256="0bwkk574b44ndm1frv16rhv5c200q1f6402k97d19gwh6rihw2h1"; depends=[codetools]; }; + globals = derive2 { name="globals"; version="0.8.0"; sha256="0882vpjsl9f5jld3bldgl6y1kdncl9gk3m6amigmpgcd9a6v7pm2"; depends=[codetools]; }; globe = derive2 { name="globe"; version="1.1-2"; sha256="11y3dbi3x3idlwhzr5s2g976myci91l1qlsfyny732gb7q32c79w"; depends=[]; }; glogis = derive2 { name="glogis"; version="1.0-0"; sha256="19h0d3x5lcjipkdvx4ppq5lyj2xzizayidx0gjg9ggb1qljpyw9m"; depends=[sandwich zoo]; }; glpkAPI = derive2 { name="glpkAPI"; version="1.3.0"; sha256="0173wljx13jali2jxz4k5za89hc64n2j9djz5bcryrqhq4rmkp87"; depends=[]; }; glrt = derive2 { name="glrt"; version="2.0"; sha256="0p2b0digndvnn396ynv56cdg436n3ll7pxkb81rs3dhwbyqyc948"; depends=[survival]; }; - glycanr = derive2 { name="glycanr"; version="0.2.0"; sha256="09v4xs1fxl9iiqcw66wz09ap3nbmr76f8mihjy06byrqxqjy07j9"; depends=[coin dplyr ggplot2 tidyr]; }; - gmailr = derive2 { name="gmailr"; version="0.6.0"; sha256="1l0lnlq5vrxrab8d9b5hwm8krg8zgx8f8m0kfnryyyrqkjrksky5"; depends=[base64enc httr jsonlite magrittr mime]; }; - gmapsdistance = derive2 { name="gmapsdistance"; version="1.0"; sha256="14hwwnzx5jd8r2v34066pa59ngvxbmzhni0nc9hg7i3p0gzbfw4b"; depends=[RCurl XML]; }; + glycanr = derive2 { name="glycanr"; version="0.3.0"; sha256="1s3xhg31xc3x4gzxjpn9mbb7dw4m49na2mdlgr5wh1z9gxdc06pa"; depends=[coin dplyr ggplot2 tidyr]; }; + gmDatabase = derive2 { name="gmDatabase"; version="0.5.0"; sha256="0prap4a8pvylmvakd2ii87jz9bqf0vvfsxdi4iwa40nx444hqhx2"; depends=[DBI digest foreach RMySQL shiny]; }; + gmailr = derive2 { name="gmailr"; version="0.7.1"; sha256="1gniwwl0ci0wm7a3ai2lqrr590smmkdgyf3aarw6bdygn8hr3s3y"; depends=[base64enc crayon httr jsonlite magrittr mime]; }; + gmapsdistance = derive2 { name="gmapsdistance"; version="3.1"; sha256="1hsijd1ahsppmxpnx690s27lry1w3c8r9jynhj0rsr4w6jmxikc2"; depends=[RCurl XML]; }; gmatrix = derive2 { name="gmatrix"; version="0.3"; sha256="0ni5scx48m99jg9a5l93qvfkz6v5m7d5c0fwhp14mgiw32ff1s1r"; depends=[]; }; gmeta = derive2 { name="gmeta"; version="2.2-6"; sha256="1zq5prig4mq6i8gkaynv8p786dbwh670bv0mapwmyns1r0yarzkm"; depends=[BiasedUrn binom]; }; gmm = derive2 { name="gmm"; version="1.5-2"; sha256="1phd8mmfyhjb72a45gavckb3g8qi927hdq0i8c7iw1d28f04lc70"; depends=[sandwich]; }; gmnl = derive2 { name="gmnl"; version="1.1-1"; sha256="0pdbky9gm8s3dvyg6z7pvn7wzqlbvdg7y0py9kcwfxxjvwcp1qwh"; depends=[Formula maxLik mlogit msm plotrix truncnorm]; }; gmodels = derive2 { name="gmodels"; version="2.16.2"; sha256="0zf4krlvdywny5p5hnkr0r0hync6dvzc9yy4dfywaxmkpna8h0db"; depends=[gdata MASS]; }; - gmp = derive2 { name="gmp"; version="0.5-12"; sha256="10fpvcli526a8j6jaryn0mwk78c24xy7whdpcvqzzvb41l6nnkma"; depends=[]; }; + gmp = derive2 { name="gmp"; version="0.5-13"; sha256="0gng529l8nkazrlypsmc50gd0sn8zgkw7xc2ymrwkykiv1lcwdv2"; depends=[]; }; gmt = derive2 { name="gmt"; version="1.2-0"; sha256="09az2iwwhyrls4mr619vwzhzmaks6klm67lnir48bh40hynsvibp"; depends=[]; }; gmum_r = derive2 { name="gmum.r"; version="0.2.1"; sha256="127h76nm99ldpaznys5y4rnrvq0kh5pcsjmw21hz79a8rjni7r16"; depends=[BH ggplot2 httr igraph Matrix Rcpp RcppArmadillo SparseM]; }; gmwm = derive2 { name="gmwm"; version="2.0.0"; sha256="1cjmd0758ggjkpf5mkfdhwl121yv84gm1cwg6b2c1r8pd3wcqx57"; depends=[ggplot2 Rcpp RcppArmadillo reshape2 scales]; }; + gnlm = derive2 { name="gnlm"; version="1.1.0"; sha256="0fv89cvbnp9n3lgg6y4sqmz9jzcgwj7vd92rwg7hixwrjyqpan4z"; depends=[rmutil]; }; gnm = derive2 { name="gnm"; version="1.0-8"; sha256="1581lzkb1v3y0arrq7x1bg7c91cii87bifxcdi1jzyc5rxj261la"; depends=[MASS Matrix nnet qvcalc relimp]; }; - gnmf = derive2 { name="gnmf"; version="0.7"; sha256="00y1dx1c66gv769yiwnb91xbr77wpidf36x0n0dzaqfn7s9yh6xq"; depends=[]; }; - gnumeric = derive2 { name="gnumeric"; version="0.7-4"; sha256="0q9qrwwkrwcdh5c1prh7d8j4raca59vgaxx7rjh36cml372vkrai"; depends=[XML]; }; + gnmf = derive2 { name="gnmf"; version="0.7.1"; sha256="1vbcsxg61mlsdir8szd0rdxfswr7kr6a07750ar2l9b4rkg3yfqz"; depends=[]; }; + gnumeric = derive2 { name="gnumeric"; version="0.7-6"; sha256="0d8igplypw40kshg9skij0cymc6j5hmbmqhbfpm0v2q3kw5r9d3p"; depends=[XML]; }; goalprog = derive2 { name="goalprog"; version="1.0-2"; sha256="1h3nd3d53hbz5hl3494lpfjnp1ddklc17nhgw18362jd1nk14awy"; depends=[lpSolve]; }; + goeveg = derive2 { name="goeveg"; version="0.3.3"; sha256="1p66fc1vr09zxp1h81b8by2cldxn0q8vivcc5g3pggb65d9wj846"; depends=[fields mgcv vegan]; }; gof = derive2 { name="gof"; version="0.9.1"; sha256="1s12gga9d6yizn2y7lzql4jd80lp5jpyml8ybn7xqswp8am82vpg"; depends=[]; }; - gofCopula = derive2 { name="gofCopula"; version="0.1-2"; sha256="09yczngqw6y9gx0fkwq5r80w44w8zng0mcxlman16mnlk6qcb0f7"; depends=[copula numDeriv SparseGrid VineCopula]; }; - goft = derive2 { name="goft"; version="1.2"; sha256="1ic3dw287rkpnj7farsj44fy21q3a46krnvaq6clmqqlgwinwajv"; depends=[gPdtest mvShapiroTest]; }; - goftest = derive2 { name="goftest"; version="1.0-3"; sha256="0rwz8y23dsklwvmd4sxq0bcklsa7l47lbs5lkcdn58jsdzm7bfrq"; depends=[]; }; + gofCopula = derive2 { name="gofCopula"; version="0.2-3"; sha256="1xigbv9mc0c1j3qc0nay0fjwmqvw91cy3x1z6m56bgkgfli7gp2l"; depends=[copula doParallel foreach MASS numDeriv R_utils SparseGrid VineCopula]; }; + gofMC = derive2 { name="gofMC"; version="1.1.2"; sha256="0hbqx0z2517qgmp6sjg76hv74yrkfbswb9rmfjmsmcyzj2x67w86"; depends=[ggplot2 scales]; }; + gofastr = derive2 { name="gofastr"; version="0.2.1"; sha256="1a291bddhzk0wxrmk9dpiiv93h6si8s19v00wmypw0jfbrjhlc53"; depends=[data_table quanteda slam SnowballC tm]; }; + goft = derive2 { name="goft"; version="1.3.1"; sha256="079p0l4w630j87h0xwk3wxpnd5779by507mffkwgj4qx4ljjfnqr"; depends=[fitdistrplus]; }; + goftest = derive2 { name="goftest"; version="1.0-4"; sha256="0rp8qlcv0az49gxplxycz4q9l66z8y69jg4kwzfn78l5z6qdvq5s"; depends=[]; }; + gogamer = derive2 { name="gogamer"; version="0.4.3"; sha256="0p11pxwc4vnmf2hh0zxv99qlqkqiszqawh8scw4v861i8ihp84iz"; depends=[dplyr ggplot2 gridExtra magrittr Rcpp scales stringr]; }; gogarch = derive2 { name="gogarch"; version="0.7-2"; sha256="03gpl73zc6kx4gni59xbg7b38dkpd7p4c7kvlqm46f58j257viik"; depends=[fastICA fGarch]; }; - googleAuthR = derive2 { name="googleAuthR"; version="0.2.0"; sha256="1wbysvm8lafyjwva68hjggphb1i4nzp2mr00ywj42zlk30n17skk"; depends=[httr jsonlite R6]; }; + goldi = derive2 { name="goldi"; version="1.0.0"; sha256="1asn5r8klmpizmp8bfapfy5vraf7sxswm3fky6473hxajz4hyfvw"; depends=[dplyr futile_logger magrittr Rcpp RcppArmadillo SnowballC tm]; }; + googleAnalyticsR = derive2 { name="googleAnalyticsR"; version="0.3.0"; sha256="1zjldi93g5871dw1vdxriw08rz5hrmpx530r76s6r0rlijs9lwal"; depends=[bigQueryR dplyr googleAuthR googleCloudStorageR jsonlite magrittr shiny tidyjson]; }; + googleAuthR = derive2 { name="googleAuthR"; version="0.4.0"; sha256="00dm7ccfm2sk3qmgffs3dx809ihwfhw49f6fsgnllm19qyxf5hl0"; depends=[devtools formatR httr jsonlite miniUI R6 roxygen2 shiny testthat]; }; + googleCloudStorageR = derive2 { name="googleCloudStorageR"; version="0.2.0"; sha256="02l3jml2sqw4m7fralr3dzyk06h8jinn6bi54gwc02f1y84j8qfh"; depends=[googleAuthR httr jsonlite readr testthat]; }; + googleComputeEngineR = derive2 { name="googleComputeEngineR"; version="0.1.0"; sha256="173y7m2j6iw848djjawkiy22fg56hnpx0m0q1halzwycqx6z08vc"; depends=[future googleAuthR jsonlite]; }; googlePublicData = derive2 { name="googlePublicData"; version="0.15.7.28"; sha256="1bkfj88rn8ai0kbjbd0s3zih6iz018xybr13w2h9i6wdi3dhs75s"; depends=[XLConnect XML]; }; - googleVis = derive2 { name="googleVis"; version="0.5.10"; sha256="00lh8nx8qims9zrb664m7g4psw2p5qwmmkb7gxlizmp1fccwvlq5"; depends=[RJSONIO]; }; - googleformr = derive2 { name="googleformr"; version="0.0.1"; sha256="17v82njhnzp8p3lbd17dyxcv7p5vs0ivwq30asgv1mzpm19jm074"; depends=[httr magrittr rvest xml2]; }; - googlesheets = derive2 { name="googlesheets"; version="0.2.0"; sha256="07lyxjn2iqxwgngj3rfddq08d8ip8iyfs32kf7f4ncy4swk91lmp"; depends=[cellranger dplyr httr jsonlite purrr readr stringr tidyr XML xml2]; }; - goric = derive2 { name="goric"; version="0.0-8"; sha256="0ayac0yfkxrl13ckc2pwfqnmsrhmbg5bi6iwzx0fmh81vrlp0zrm"; depends=[MASS Matrix mvtnorm nlme quadprog]; }; + googleVis = derive2 { name="googleVis"; version="0.6.2"; sha256="1idnp9ndgg2dwybdpw7q3pkaw9kw2vy2xkls9qykrpz1p6nf3mn1"; depends=[jsonlite]; }; + googleformr = derive2 { name="googleformr"; version="0.0.3"; sha256="0smykcjyqmk61ws5jk462l8x5hg0h9nwq55q5pqfgcq1j3yfniqh"; depends=[httr rvest xml2]; }; + googlesheets = derive2 { name="googlesheets"; version="0.2.1"; sha256="0ps13h1cv7fj5dh8s4nvwi64wnnyqdsadcaa4iizq1c5s615cwk3"; depends=[cellranger dplyr httr jsonlite purrr readr stringr tidyr xml2]; }; + googleway = derive2 { name="googleway"; version="1.0.0"; sha256="01gzpb48iffir57cqw9hs2s4rxdllvdjf5hkmrf5zkjxhbzw7w14"; depends=[curl jsonlite Rcpp]; }; + goric = derive2 { name="goric"; version="0.0-95"; sha256="05sbsnjjlpy1z0mfbsrihrp2gp4d66cvprhgzxy76lipgm5mmvqi"; depends=[MASS Matrix mvtnorm nlme quadprog]; }; govStatJPN = derive2 { name="govStatJPN"; version="0.1"; sha256="03sywa7rl5rblvv370mfszz5ngp850qf32yydy1fdx10lv5amrfl"; depends=[]; }; + gower = derive2 { name="gower"; version="0.1.1"; sha256="04k1c9h27wknp5bvzxq6gzv3yccmfhs3whnaic1phz4f9vx5g6bz"; depends=[]; }; gpDDE = derive2 { name="gpDDE"; version="0.8.2"; sha256="100g2f8zlpbwxb46h62pgvidll8aflz1zl4inyh8dml6vhm9pilp"; depends=[CollocInfer deSolve fda forecast lars limSolve MASS nnls penalized trustOptim TSA]; }; gpairs = derive2 { name="gpairs"; version="1.2"; sha256="09mkdbs9hklxnmqcsnf65s3dfsfcr7kppp6zxj08v5hxym1gpz3l"; depends=[barcode colorspace lattice MASS vcd]; }; gpclib = derive2 { name="gpclib"; version="1.5-5"; sha256="08j81b8wymsgin20n54gvm6m54rmdic51p6qzs9cz4pmgl7dkkjv"; depends=[]; }; + gpg = derive2 { name="gpg"; version="0.4"; sha256="081b2s491hcy2azyqwlzr5xh5bbvinhnlqr21w6w02rxvib6p3jj"; depends=[curl]; }; gpk = derive2 { name="gpk"; version="1.0"; sha256="1zfhkqyypb24mhbj2zi9qy3gw0kqxvlp8j5ni3zm7k5rz1bnrygg"; depends=[]; }; - gplm = derive2 { name="gplm"; version="0.7-2"; sha256="0pr39fbkv61iwd110lq76p2fi4dvx9qz6mjsvg6bpja9pfbb6wc0"; depends=[AER]; }; - gplots = derive2 { name="gplots"; version="2.17.0"; sha256="0dyysysl595khv00m4h68s7zx7xlfnpxzfkc49av1s3fc58bvmr5"; depends=[caTools gdata gtools KernSmooth]; }; + gplm = derive2 { name="gplm"; version="0.7-4"; sha256="0apvj14nl5qbi4dhhdx5nih5lvjwfcipvr8cyk6xsz4r5gfr2iw4"; depends=[AER]; }; + gplots = derive2 { name="gplots"; version="3.0.1"; sha256="02nb8n3s7c1zxq2s7ycaq2ys72y7mzirxrwj954h6gdc4x1zhg9l"; depends=[caTools gdata gtools KernSmooth]; }; gpmap = derive2 { name="gpmap"; version="0.1.1"; sha256="00jhslbxbp6dgq7bw346hfpw0gans048vsn7chyzjhyr7ah5xrfg"; depends=[foreach ggplot2 isotone plyr]; }; gpr = derive2 { name="gpr"; version="1.1"; sha256="03ywik11kc6cnaqrzzzi94jkrdbd378m3sf26f2vpb7d834nl728"; depends=[]; }; gptk = derive2 { name="gptk"; version="1.08"; sha256="0fk6c8f8fni4y2n2cbfwywlfyz74xlb8lx25wajsxr2v4x74pa7l"; depends=[fields Matrix]; }; - gpuR = derive2 { name="gpuR"; version="1.1.0"; sha256="1a5x9yy5iyyrvrzbiwnzlcr9ykd3cn6y29n9c5zlky1q8ivagsxy"; depends=[assertive BH Rcpp RcppEigen RViennaCL]; }; - gputools = derive2 { name="gputools"; version="1.0"; sha256="0zaib7f7mnx0pa7kxkza7m097d1zfn1ci8x9i8q4syfi06cs3s6n"; depends=[]; }; - gquad = derive2 { name="gquad"; version="1.0-0"; sha256="0rfhcc7c0lfn4hqwcbly1kdpna9kr5ryvan279iydysv5iha96rr"; depends=[ape seqinr]; }; + gpuR = derive2 { name="gpuR"; version="1.2.1"; sha256="1k9nxsz4grjl8lyf9108vj94g2gpi6h0pbf5l63y2h5rn0lmpw8s"; depends=[assertive BH Rcpp RcppEigen RViennaCL]; }; + gputools = derive2 { name="gputools"; version="1.1"; sha256="0np1lndvppdi409a1kfbbl0z5hr8wg2q473jch58zd16d2ickwkb"; depends=[]; }; + gquad = derive2 { name="gquad"; version="2.0-0"; sha256="0d2mg21ix1a08lk43mz0r84q49yhgh7w9jyxa89lmx9ihzl42nhx"; depends=[ape seqinr]; }; grImport = derive2 { name="grImport"; version="0.9-0"; sha256="1d8fd7502qj7cirjqdkr1qj51rylw2fz5hs06avfvc2dxs2xwfw1"; depends=[XML]; }; + gradDescent = derive2 { name="gradDescent"; version="2.0"; sha256="0qfm9vzi8j083na5ziwjypycbw6ncwk75xsaam2vc4xhfarw8fjs"; depends=[]; }; grade = derive2 { name="grade"; version="0.2-1"; sha256="085hfvqn880yk19axdjv3z9jr33kls212vs172a8mzhnkallph1r"; depends=[]; }; - gramEvol = derive2 { name="gramEvol"; version="2.1-2"; sha256="18i97pj58scqpxhphn1cnb0n9a94ki0i6fgi1f99mrk17w2jwmi8"; depends=[]; }; + gramEvol = derive2 { name="gramEvol"; version="2.1-3"; sha256="0z2511zhs2gcdkwp29n6fpafhn49h69yi56nmrhh9zc8jqj1rwpa"; depends=[]; }; granova = derive2 { name="granova"; version="2.1"; sha256="161fznqlnwmw53abmg2n62lhxxda7400ljnadvcdvsm8f6kcjf80"; depends=[car]; }; granovaGG = derive2 { name="granovaGG"; version="1.4.0"; sha256="0khqlqc6jg9cpdq06g6jlpfjcw3m6rj40ipljfai8g1630ril6q4"; depends=[ggplot2 gridExtra plyr RColorBrewer reshape2]; }; - graphTweets = derive2 { name="graphTweets"; version="0.3"; sha256="0kfj02pwg5jpq5barw7yr4ym3jhm6b2shk4a47yw7841rv93pdiz"; depends=[dplyr igraph reshape2]; }; - graphicalVAR = derive2 { name="graphicalVAR"; version="0.1.3"; sha256="0awbcx8qb77r4qb90xinp49glwbkvyfb5f5y2qrjk8rr2jd62j0s"; depends=[glasso glmnet Matrix mvtnorm qgraph Rcpp RcppArmadillo]; }; - graphicsQC = derive2 { name="graphicsQC"; version="1.0-7"; sha256="14xpczrxaxzm02figrnzgz4a7g4r4rd1j9mfh0lw6xnbj2wf0p13"; depends=[XML]; }; - graphscan = derive2 { name="graphscan"; version="1.1"; sha256="1v56g1gzlls78mdad9wllyq7zywmjzamrcxw0pk655nwjbqfiyw5"; depends=[ape rgl snowfall sp]; }; + graphTweets = derive2 { name="graphTweets"; version="0.3.2"; sha256="13kab1nz85ghs5n882ss513di30b7lg72h676v37404ypj5a1vi1"; depends=[dplyr igraph reshape2]; }; + graphicalVAR = derive2 { name="graphicalVAR"; version="0.1.4"; sha256="09qrndfxxjfc8l2g6p4si6w9khz0gjmr7fisbvw395bf2vxvd47i"; depends=[dplyr glasso glmnet Matrix mvtnorm qgraph Rcpp RcppArmadillo]; }; + graphicsQC = derive2 { name="graphicsQC"; version="1.0-8"; sha256="12vg93xfmkv73i19vkb10q2qngmsxd3y42z3l6izdywbdc3cdfkg"; depends=[XML]; }; + graphql = derive2 { name="graphql"; version="1.2"; sha256="03rmxpd1g9r1hgv9r3mrwf5pp4013cpqvbg385ywfm8l1c3j0a3z"; depends=[jsonlite Rcpp]; }; + graphscan = derive2 { name="graphscan"; version="1.1.1"; sha256="1dgjb0grdymhimdgwnddjcivgy2i9r1i1nni4v9mx0447skcahk9"; depends=[ape rgl snowfall sp]; }; graticule = derive2 { name="graticule"; version="0.1.2"; sha256="1yvrijvyjilfql72dxj32b3sczqv065zj61729wrrzn63xcifvmb"; depends=[raster sp]; }; - greport = derive2 { name="greport"; version="0.5-3"; sha256="0cd7rqzrk1yb22ksbmva1fl9k388bxxm586c20j8k8z5zympi9g1"; depends=[data_table Formula ggplot2 Hmisc lattice latticeExtra rms survival]; }; + grattan = derive2 { name="grattan"; version="1.3.0.3"; sha256="1k8ynf6wazjhsr0m3wy39s6833cd5j906awxkr2yhy5dfwy4jfhr"; depends=[assertthat data_table dplyr forecast lazyeval lubridate magrittr purrr Rcpp rsdmx zoo]; }; + gravity = derive2 { name="gravity"; version="0.3"; sha256="0makhi5hfs2x891ss6whq49rp73j6h5x5m4dvd0d175y06n4hg3s"; depends=[lmtest multiwayvcov sandwich]; }; + greport = derive2 { name="greport"; version="0.7-1"; sha256="1h1g3khb30n3y8l1sxpas2s6s667az4yxvsq42x5dfx8fic42p6n"; depends=[data_table Formula ggplot2 Hmisc lattice latticeExtra rms survival]; }; + grex = derive2 { name="grex"; version="1.4"; sha256="0jj0473q06ym410glnma7sbqn9z0l0j0i5kw3mqynjs3blr03d7w"; depends=[]; }; greyzoneSurv = derive2 { name="greyzoneSurv"; version="1.0"; sha256="115i0d4fy4p4g4vd419hj9f23hi8cbiyfilgpgmag91ilr1xpcdp"; depends=[Hmisc survAUC survival]; }; gridBase = derive2 { name="gridBase"; version="0.4-7"; sha256="09jzw4rzwf2y5lcz7b16mb68pn0fqigv34ff7lr6w3yi9k91i1xy"; depends=[]; }; gridDebug = derive2 { name="gridDebug"; version="0.5-0"; sha256="12zrl7p8p7071w5viymdipycja7a2arvy0aahgahd5nlx1k1gha0"; depends=[graph gridGraphviz gridSVG]; }; @@ -4590,74 +5730,93 @@ in with self; { gridGraphics = derive2 { name="gridGraphics"; version="0.1-5"; sha256="1fsw699xk56iiwscrf98a1b0m2xpmvfqqsb7aja49fhv8qam6szf"; depends=[]; }; gridGraphviz = derive2 { name="gridGraphviz"; version="0.3"; sha256="1jz0d6kc8ci55ffm6dns8bhak9xnaq7mg5mpv3fk53lircn7mwl5"; depends=[graph Rgraphviz]; }; gridSVG = derive2 { name="gridSVG"; version="1.5-0"; sha256="15d35066213hwsxsvmnqxqm4wim850645jwajw4pa190v8sapl89"; depends=[RJSONIO XML]; }; + gridsample = derive2 { name="gridsample"; version="0.1.3"; sha256="169jsvavn46iaczf9j9zh41ila3vv7i8bapsbdy39sifwadqqw4y"; depends=[data_table geosphere maptools raster rgdal rgeos sp spatstat]; }; + gridsampler = derive2 { name="gridsampler"; version="0.6"; sha256="0wqpqg9c372sv8zqks6v93gawiyfghw58hn7m8q45dxpqm16ss3k"; depends=[BiasedUrn ggplot2 plyr reshape2 shiny shinyBS shinythemes]; }; grnn = derive2 { name="grnn"; version="0.1.0"; sha256="1dxcmar42g9hz4zlyszlmmnnsnja0gxfggav5jxv0gkp32rkd0wh"; depends=[]; }; groc = derive2 { name="groc"; version="1.0.5"; sha256="1kqcdyq1y80gd62jpn38yz6q1qmg84b7k8qcniip5h948vfzkddg"; depends=[MASS mgcv pls robust robustbase rrcov]; }; grofit = derive2 { name="grofit"; version="1.1.1-1"; sha256="1rnym5fxbg3bin2idmymrwvf1fcd646bipbgjd6wby8my69zy4c5"; depends=[]; }; gromovlab = derive2 { name="gromovlab"; version="0.7-6"; sha256="02s7x23610dbpmrqh7pimspa10v3fnmj48fwmh0a6igd74rmj2mg"; depends=[ape cluster glpkAPI igraph quadprog]; }; groupRemMap = derive2 { name="groupRemMap"; version="0.1-0"; sha256="1bfp746j0dx7kk44nyjqmimvgw14par9ayvqxnzldc05qsazjdwx"; depends=[]; }; + groupdata2 = derive2 { name="groupdata2"; version="0.1.0"; sha256="1kqmwjf06bnm0fbvcsicfrkgl7kn42v5bip1m9riiqmk4wh2bkqx"; depends=[dplyr plyr]; }; grouped = derive2 { name="grouped"; version="0.6-0"; sha256="1glxgacpwk7yjbkwg5ci6bmb2il6hf5zhydwi5bbq6hc032m9976"; depends=[MASS]; }; - growcurves = derive2 { name="growcurves"; version="0.2.4.0"; sha256="1ybhcw3kjsgpssilsg1kdg0az61s16mi1cbk4qgcvsb291f3m4i3"; depends=[Formula ggplot2 Rcpp RcppArmadillo reshape2]; }; - growfunctions = derive2 { name="growfunctions"; version="0.12"; sha256="08ip90k36hq2c6zp1ys27xb9n5d2aafw8carj6vjszb057khmnxh"; depends=[ggplot2 Matrix mvtnorm Rcpp RcppArmadillo reshape2 spam]; }; - growthcurver = derive2 { name="growthcurver"; version="0.2.0"; sha256="062azq7fix1cpbx779636zv404z75niz40grxfqsh02afabg5ki4"; depends=[caTools minpack_lm]; }; + grove = derive2 { name="grove"; version="1.0"; sha256="1w8qz2k6m2xm0n699dj69aiagxy728q66bphxbmn71kakymvkgnz"; depends=[Rcpp RcppArmadillo wavethresh]; }; + growcurves = derive2 { name="growcurves"; version="0.2.4.1"; sha256="0h96c1hd6cdzc2l2a9dakmxn2hspvr0fpx9938iscm4hi9ds97m2"; depends=[Formula ggplot2 Rcpp RcppArmadillo reshape2]; }; + growfunctions = derive2 { name="growfunctions"; version="0.13"; sha256="19ngsd326vws2f3wsrkcsyzn64fm9nnqvnbamfw6aal9xzzzz59m"; depends=[ggplot2 Matrix mvtnorm Rcpp RcppArmadillo reshape2 spam]; }; + growth = derive2 { name="growth"; version="1.1.0"; sha256="0d1hc56ybp5chckqv5q5jvpgbl7xn9dkbc4dd4sz5gawn1hngbxm"; depends=[rmutil]; }; + growthcurver = derive2 { name="growthcurver"; version="0.2.1"; sha256="0q70g940ggpwnx2cpq2j8ambfbj9sqw6ivyp9cya1nbn05bah9ds"; depends=[caTools minpack_lm]; }; growthmodels = derive2 { name="growthmodels"; version="1.2.0"; sha256="1wy5z77819s3daa0mifafcjfkggsq0ac522yagj86ml3vf7yqppj"; depends=[]; }; growthrate = derive2 { name="growthrate"; version="1.3"; sha256="1ak3yqlm7dnkdjlmikwa57qnf7yd9n1ixz36gv3shr252750x9cd"; depends=[clime Matrix mvtnorm]; }; growthrates = derive2 { name="growthrates"; version="0.6.5"; sha256="1bnp51hlcb2gpm7j9llbnxjgimbrdsshjxl19ka9w1ba423v2ja2"; depends=[deSolve FME lattice]; }; + grpSLOPE = derive2 { name="grpSLOPE"; version="0.2.1"; sha256="1r9irf83f7szhkdqis2rakil8fsr3rqsfrj4dmbg3r3rnr8wl8nh"; depends=[SLOPE]; }; grplasso = derive2 { name="grplasso"; version="0.4-5"; sha256="15bqckq9qjdlllhfpb21vzgi9msbl544alkrz01w1vvb3hk1847y"; depends=[]; }; grppenalty = derive2 { name="grppenalty"; version="2.1-0"; sha256="12hbghmg96dwlscjy6nspgkmqqj4vwq2qcwcz1gp50a08qbmdcrk"; depends=[]; }; - grpreg = derive2 { name="grpreg"; version="2.8-1"; sha256="0n6j4mx2f0khdqz7c7yhmsh6gcxha2ypknqa421qir1nvp0x57c9"; depends=[Matrix]; }; - grpregOverlap = derive2 { name="grpregOverlap"; version="1.0-1"; sha256="09s3gp59z703zqhpnqzqhkd454b5rlq1cgdhcvql2ad4csxxs03x"; depends=[grpreg Matrix]; }; + grpreg = derive2 { name="grpreg"; version="3.0-2"; sha256="1w6q7n1z585abs7kb2yq95dr6rycan0rkiial9q415s5rf71s48j"; depends=[Matrix]; }; + grpregOverlap = derive2 { name="grpregOverlap"; version="2.2-0"; sha256="1kq8wxpx21irwckndgfkzdy5jgzf7pmcwpclmjzjxznv6cyaikd0"; depends=[grpreg Matrix]; }; grpss = derive2 { name="grpss"; version="3.0.1"; sha256="01bjjhv3vkvn5h363g5a9dlm7kzq10q7ixmrc0kkq5hsbs31vl3x"; depends=[doParallel foreach grpreg MASS]; }; - grr = derive2 { name="grr"; version="0.9.2"; sha256="07vw0m1ynjanx6520zx8nycmgxj53p3a5bdznaj9zjfqmy9qyjgm"; depends=[]; }; + grr = derive2 { name="grr"; version="0.9.5"; sha256="0arbcgrvhkwb5xk4nry1ffg2qj0v8ivhjghdr505ib4357g0c9i9"; depends=[]; }; grt = derive2 { name="grt"; version="0.2"; sha256="0cqjk7yqk2ryx1pgvjd3x8l25hqv92p8rvdr7xw4jkzillllwmhz"; depends=[MASS misc3d rgl]; }; gsDesign = derive2 { name="gsDesign"; version="3.0-1"; sha256="0cixg176ihbkwkcllabr2klc15cssdnfzwklf0q1wd23lmv6aj43"; depends=[ggplot2 plyr xtable]; }; - gsEasy = derive2 { name="gsEasy"; version="1.0"; sha256="0fbcajnczgmf8gr080rmkg2wxfinjyv6wwznism4m4jlycq4cbjj"; depends=[ontologyIndex Rcpp]; }; + gsEasy = derive2 { name="gsEasy"; version="1.1"; sha256="1g68v51wpgb0fq4nb3q4b9hv34f12dlcp6115css7748imz9p99q"; depends=[ontologyIndex Rcpp]; }; gsalib = derive2 { name="gsalib"; version="2.1"; sha256="1k3zjdydzb0dfh1ihih08d4cw6rdamgb97cdqna9mf0qdjc3pcp1"; depends=[]; }; gsarima = derive2 { name="gsarima"; version="0.1-4"; sha256="1ay3iamnvg7mbnl1xaxxcyic559bdnfspy883w2bwgy20yhr34yg"; depends=[MASS]; }; - gsbDesign = derive2 { name="gsbDesign"; version="0.96-3"; sha256="03q2lxz6x4zpwnn15a7mda2qv0d5xrsz563y7103gnmdxnxqqsbc"; depends=[gsDesign lattice]; }; + gsbDesign = derive2 { name="gsbDesign"; version="1.00"; sha256="1kbwlpxbr70aagx9jkap9xlw13r1k3y630b08wmmny421sv4zhxl"; depends=[gsDesign lattice]; }; gset = derive2 { name="gset"; version="1.1.0"; sha256="1gingqw6la8n7mnl47wpz9sicxca4zi2m8p35n6cnihrniibhajc"; depends=[Hmisc MCMCpack mvtnorm]; }; gsg = derive2 { name="gsg"; version="2.0"; sha256="17fjl7aw1s814krnszxd4y1d4210bnkrf4kb2fwsycqwcwms5pm7"; depends=[boot mgcv mvtnorm numDeriv]; }; - gsheet = derive2 { name="gsheet"; version="0.2.1"; sha256="02fz7yvav3cl1cdjb6iqbgaiz25r6xnc92kz0b30qlkvv70995cs"; depends=[magrittr rvest stringr xml2]; }; + gsheet = derive2 { name="gsheet"; version="0.4.2"; sha256="1mfpg91855qg0bi6wk0wy58b58lm06jw9fqdl6psqdvnmaf7n2w5"; depends=[httr stringr]; }; gskat = derive2 { name="gskat"; version="1.0"; sha256="19mbif7wr88vk5wlc7m2l4xghjmfj2qd3s8yvjlkawbnjk8x6ib0"; depends=[CompQuadForm e1071 gee geepack Matrix]; }; - gsl = derive2 { name="gsl"; version="1.9-10.1"; sha256="0pbxzn5zkaskaqn308bj8s78v65fngmqkzxms3ji5x6azgcgfzvp"; depends=[]; }; + gsl = derive2 { name="gsl"; version="1.9-10.3"; sha256="00isw2iha5af4s7rr8svqka9mkl9l26l8h2rnk4r7fkhh7fc97sg"; depends=[]; }; gsmoothr = derive2 { name="gsmoothr"; version="0.1.7"; sha256="00z9852vn5pj04dhl3w36yk0xjawniay6iifw1i7fd8g98mgspxp"; depends=[]; }; - gss = derive2 { name="gss"; version="2.1-5"; sha256="19bysbh6n04psv0mgvlhkpkc463f6zfiwbdsvd28fakbzcwwm8h2"; depends=[]; }; + gsrc = derive2 { name="gsrc"; version="1.1"; sha256="12rrp9v0r5qzxcs1l29238nkc1haql1c4vva3vdm26kglpg7qj18"; depends=[Ckmeans_1d_dp dbscan DNAcopy illuminaio limma openxlsx preprocessCore R6]; }; + gss = derive2 { name="gss"; version="2.1-6"; sha256="1vkdhji8xpnq9j2ah3vnfvhyjnkgk406grws4q3gj4csbpkkzh86"; depends=[]; }; gsscopu = derive2 { name="gsscopu"; version="0.9-3"; sha256="0bvhhs5wn4y1dcff2g87f80jdn3i4mdbvdbydsbx80ng38rfxhhg"; depends=[gss]; }; - gstat = derive2 { name="gstat"; version="1.1-2"; sha256="1b7364g38s3w2h958cbvyk94cry1y0k32z5mr5r290yygr2nzqyn"; depends=[FNN lattice sp spacetime zoo]; }; + gstat = derive2 { name="gstat"; version="1.1-4"; sha256="138v8accqwf95a3i980x57wd2j8vmdg1ga44rx9nbjcpyxc5x6mf"; depends=[FNN lattice sp spacetime zoo]; }; gsubfn = derive2 { name="gsubfn"; version="0.6-6"; sha256="196x4c3ihf4q3i0v7b1xa6jm8jjld2rsx00qz03n90wfnjdx5idv"; depends=[proto]; }; gsw = derive2 { name="gsw"; version="1.0-3"; sha256="0ca3h567r23bdldic7labk1vbz8hhslw568lacbdcikm8q16hk72"; depends=[]; }; gtable = derive2 { name="gtable"; version="0.2.0"; sha256="0vz7073m0a2q12qzzihrfh5c2kx5jqi5l7z470fxmwqghdllh7l0"; depends=[]; }; gtcorr = derive2 { name="gtcorr"; version="0.2-1"; sha256="1n56zmyv58jwr95p453jb86j82pdnq57gfc8m15jndjc9p31zl0m"; depends=[]; }; gte = derive2 { name="gte"; version="1.2-2"; sha256="1x528iakyjhh4j92cgm6fr49a3rdi4cqy28qhsfr2dwvxzxchl6h"; depends=[survival]; }; + gtheory = derive2 { name="gtheory"; version="0.1.2"; sha256="1xc1jl69z5csalqk3hx83s53awcl1fjq6p0x2pczhs7dsvwd6lks"; depends=[lme4]; }; gtools = derive2 { name="gtools"; version="3.5.0"; sha256="1xknwk9xlsj027pg0nwiizigcrsc84hdrig0jn0cgcyxj8dabdl6"; depends=[]; }; gtop = derive2 { name="gtop"; version="0.2.0"; sha256="1nvvbf181x0miw3q0r2g0nklz29ljdsd07cazaajfls7pmhi0xw9"; depends=[hts lassoshooting quadprog]; }; - gtrendsR = derive2 { name="gtrendsR"; version="1.3.3"; sha256="06z58av7fkmnvb0jmz8g5xffdnpm11iz3lvnvq4az7lq33r2vmah"; depends=[ggplot2 googleVis RCurl zoo]; }; + gtrendsR = derive2 { name="gtrendsR"; version="1.3.5"; sha256="0jfriygsgi1pm8kvnnydf7ahqs9m6n4j093am076pc9sfxafjj13"; depends=[ggplot2 googleVis rvest zoo]; }; gtx = derive2 { name="gtx"; version="0.0.8"; sha256="0x71jji2yldi9wpx8d3nldbjfj4930j7zcasayzbylf9094gmg26"; depends=[survival]; }; guess = derive2 { name="guess"; version="0.1"; sha256="198pxi0yipgm9wccpj3y4a0gkibhyxcmb7v5dz7ipzrk44ha5g6j"; depends=[Rsolnp]; }; gumbel = derive2 { name="gumbel"; version="1.10-1"; sha256="12rkri8bvgjn0ylf1i4k9vpb8mvbasidvx2479kmis2rc1p07qq7"; depends=[]; }; - gunsales = derive2 { name="gunsales"; version="0.1.1"; sha256="112rir0jsfifp0hwhcnahfyz5fbz6nk8hz7mwz4xfj7jy04m0cbx"; depends=[data_table dplyr ggplot2 readr seasonal stringr x13binary zoo]; }; + gunsales = derive2 { name="gunsales"; version="0.1.2"; sha256="02vz16lhym72vvf48yai1g371wygdlmi63a6ylc147l0b69jgw31"; depends=[data_table dplyr ggplot2 seasonal x13binary zoo]; }; + gutenbergr = derive2 { name="gutenbergr"; version="0.1.2"; sha256="0agzc3ry8bm5fsn3pikr6hsmhdjrf8sln56c2wwl0vlm7p2gjca8"; depends=[dplyr lazyeval purrr readr rvest stringr urltools]; }; gvc = derive2 { name="gvc"; version="0.5.2"; sha256="0cfvli6ap5kw3agv94d7g7rhmlxd66yyngc7c9pl4fsxf7sm6nx4"; depends=[decompr diagonals]; }; gvcm_cat = derive2 { name="gvcm.cat"; version="1.9"; sha256="1kwfcmnl1ivv1lh3zxccwls2xfyx3l8v71ngc0bg6441i81d4xp5"; depends=[MASS Matrix mgcv]; }; gvlma = derive2 { name="gvlma"; version="1.0.0.2"; sha256="0gj52hg665nmlwgbjh9yvz7a3sbzlbj41ksxchnnlxaxipdf6sl8"; depends=[]; }; + gwdegree = derive2 { name="gwdegree"; version="0.1.1"; sha256="0p06hjp7vay83kbpqsgfr1d8z3ayv483rxbv86fdka94gvi1sjyc"; depends=[dplyr ergm ggplot2 gtools magrittr network scales shiny shinydashboard sna tidyr]; }; gwerAM = derive2 { name="gwerAM"; version="1.0"; sha256="1c3rzd1jf52a4dn63hh43m9s9xnjvqn67amlm9z1ndrnn6fwfg1b"; depends=[MASS Matrix]; }; + gwfa = derive2 { name="gwfa"; version="0.0.4"; sha256="0jz82d9lfyd07z0jjlfqzsg7a3vnyz0s1j0rrb5sg9pnvcfjk9qy"; depends=[Rcpp sp]; }; gwrr = derive2 { name="gwrr"; version="0.2-1"; sha256="1fjk217pimnmxsimqp9sn02nr1mwy3hw3vsr95skbfsd6vdda14d"; depends=[fields lars]; }; + gym = derive2 { name="gym"; version="0.1.0"; sha256="0vcwzgawqwjsf65hr1mbjkz3px8zsibfkn42jpsg39n13jpfjq8v"; depends=[httr jsonlite]; }; gyriq = derive2 { name="gyriq"; version="1.0.2"; sha256="12vbnhianzi4l43czaxrbnbkz1h8lvmwjys0y3c2ml3g6dmwwfji"; depends=[CompQuadForm irlba mvtnorm survival]; }; - h2o = derive2 { name="h2o"; version="3.8.1.3"; sha256="1cp2h7n3na4cwysw8di7lig0gbldji2s7f1r7d8a8a11wikvz6zy"; depends=[jsonlite RCurl statmod]; }; - h5 = derive2 { name="h5"; version="0.9.5"; sha256="1awp1pwfcdss3gd8jxps2ki4j0a2m8y5703jm1dfycgp5blkwqz4"; depends=[Rcpp]; }; + h2o = derive2 { name="h2o"; version="3.10.3.6"; sha256="1jpliv63dpqmq635gxjar19z70ciyw76yxvcg505rgryk2nf3m1h"; depends=[jsonlite RCurl]; }; + h5 = derive2 { name="h5"; version="0.9.8"; sha256="1i7ymbqcmv8b9v8jdaqs49638m7xib5k92d62jh6h4il8l10rykx"; depends=[Rcpp]; }; + hBayesDM = derive2 { name="hBayesDM"; version="0.3.0"; sha256="0ka7x55x04656cad9gyzfr2p0xf9gjyq56vw0ja9561vvbk2dynm"; depends=[BH ggplot2 loo mail modeest Rcpp RcppEigen rstan rstantools StanHeaders]; }; hSDM = derive2 { name="hSDM"; version="1.4"; sha256="1jq6hdnyv446ng62srip0b48kccf0qw3xqym3fprg74mjdy3inqr"; depends=[coda]; }; haarfisz = derive2 { name="haarfisz"; version="4.5"; sha256="1qmh4glwzqwqx3pvxc71rlcimp1l0plgdf380v9hk0b4gj7g3pkf"; depends=[wavethresh]; }; - hail = derive2 { name="hail"; version="0.1.0"; sha256="1i76hjfiad0l8vpjslnglp1irdzs419ad7q6clnbs3gganbszipy"; depends=[]; }; - hamlet = derive2 { name="hamlet"; version="0.9.4-2"; sha256="01zy6afiy7n28bbx5cwdy6hs82l1rakbwx2gn04kk6famqgmklwp"; depends=[]; }; + hail = derive2 { name="hail"; version="0.1.1"; sha256="1nrc9msqyy5iq2i6p8875anbqswxl2z6vdd4hvihnl22qh5fnbvh"; depends=[]; }; + hamlet = derive2 { name="hamlet"; version="0.9.5"; sha256="1wnklaf46fpii10md3sp2cv7qqvrha2ihhrr1kxvpm7m8xzjfqc7"; depends=[]; }; + hansard = derive2 { name="hansard"; version="0.3.4"; sha256="01z2v0lqm35p74hm9x874xgaqdmqa7pig3l4ah5id148s2f5bafd"; depends=[httr jsonlite plyr]; }; hapassoc = derive2 { name="hapassoc"; version="1.2-8"; sha256="0qs5jl0snzfchgpp6pabncwywxcmi743g91jvjiyyzw0lw85yv4s"; depends=[]; }; haplo_ccs = derive2 { name="haplo.ccs"; version="1.3.1"; sha256="0cs90zxxbvglz1af0lh37dw1gxa04k0kawzxamz2was3dbh19lbz"; depends=[haplo_stats survival]; }; - haplo_stats = derive2 { name="haplo.stats"; version="1.7.6"; sha256="16ll5a8w85yjqy9as5hyg59sbhwmfcf9wcnjl7v7s3qf9zz86211"; depends=[rms]; }; + haplo_stats = derive2 { name="haplo.stats"; version="1.7.7"; sha256="1rag22sqy8r87w5a1dww5cxknacm6975bpp74vw9zr04ldx4c64k"; depends=[rms]; }; + haploR = derive2 { name="haploR"; version="1.4.2"; sha256="1fiv8ybarna79xyhsbpql4l462g7q9x1mg37m4dgpmzp7xvzwx21"; depends=[httr XML]; }; + haploReconstruct = derive2 { name="haploReconstruct"; version="0.1.2"; sha256="17zdl9c3yy6jdzv1wp0ailbga456pmmybzxh3dldymhj8qf32cx0"; depends=[data_table dbscan foreach gplots igraph matrixStats stringi zoo]; }; + haplotyper = derive2 { name="haplotyper"; version="0.1"; sha256="0pcshlh29c4zazhkcq4371kqh9inrbx494y5a1qb1k2c92fkax31"; depends=[]; }; haplotypes = derive2 { name="haplotypes"; version="1.0"; sha256="0pwihfi6g4jrnkha9s9rksq0fc8j04mlrwf0295rmy49y19rg84s"; depends=[network]; }; - harvestr = derive2 { name="harvestr"; version="0.6.0"; sha256="1jg4d98bwx2cm3hliayqrazq43sa9kd9ynpaid6x4ld3mz5y8mlq"; depends=[digest plyr]; }; + harrietr = derive2 { name="harrietr"; version="0.2.2"; sha256="1h6i9ls33h0dgncq6i33ig04yq7i1wy1cl1xx2nvbp78ig02klng"; depends=[ape dplyr ggplot2 ggtree lazyeval magrittr tidyr]; }; + harvestr = derive2 { name="harvestr"; version="0.7.1"; sha256="0xgxzbfbc33asfm8sl2y60ki6bwgd6vdh9nz466crkx7m9lsvll8"; depends=[digest foreach plyr]; }; hash = derive2 { name="hash"; version="2.2.6"; sha256="0mkx59bmni3b283znvbndnkbar85fzavzdfgmwrhskidsqcz34yz"; depends=[]; }; hashFunction = derive2 { name="hashFunction"; version="1.0"; sha256="1v57xj8xwv6xhxvgp0zxgvs5vcjw8z5k2ciwbn0jxf4ilyd66cgj"; depends=[]; }; hashids = derive2 { name="hashids"; version="0.9.0"; sha256="0233qly4rb1g4znxm9h9h8gskzrjyav6nd26xkdl7990m5hcbcwh"; depends=[]; }; + hashmap = derive2 { name="hashmap"; version="0.1.0"; sha256="1pp62py2n8ajv90fmv4zkga3hshk9cj1qfzagnp8jnfym0jp9rlc"; depends=[BH Rcpp]; }; hashr = derive2 { name="hashr"; version="0.1.0"; sha256="1ri2zz2l1rrc1qmpqamzw21d9y06c7yb3wr60izw81l8z4mmyc3a"; depends=[]; }; - hasseDiagram = derive2 { name="hasseDiagram"; version="0.1.1"; sha256="1szj5pi9i5ijqakxx4vwvwpz7y76jbgcgm76vfg4cnxvndf7sf4l"; depends=[Rgraphviz]; }; - haven = derive2 { name="haven"; version="0.2.0"; sha256="1ww55ciibq62bix3pdwabpycxv1dh01zsrf0vb6jxxh1idxbm5hg"; depends=[BH Rcpp]; }; + hasseDiagram = derive2 { name="hasseDiagram"; version="0.1.2"; sha256="0rh5kl9ivv9ckv5j5fqwdcflbfzkjicmqrddgxnzbv1iwyph4c0w"; depends=[graph Rgraphviz]; }; + haven = derive2 { name="haven"; version="1.0.0"; sha256="15ynk1qm4g9m6ng4lc1x3hwjb2xak6b795ifh5q1k4mmx07xz6dl"; depends=[BH hms Rcpp readr tibble]; }; hawkes = derive2 { name="hawkes"; version="0.0-4"; sha256="1ghwq3icxwmrai3xn9r8cnvlh3z3j18lznhw1bm31h9mkkp2dk0a"; depends=[Rcpp RcppArmadillo]; }; hazus = derive2 { name="hazus"; version="0.1"; sha256="1c0ahjdy9di1683nk5k4rmr6rhb66523ny039nyv842rgqdy625j"; depends=[reshape2]; }; hbim = derive2 { name="hbim"; version="1.0.3"; sha256="1480nydsi2xj7zbfk4zw24mhsjadf83d827kpqzbmn0yh6srp3ps"; depends=[mvtnorm]; }; @@ -4668,79 +5827,97 @@ in with self; { hcci = derive2 { name="hcci"; version="1.0.0"; sha256="11piy1ajg3j3dbh66szzf7lhc3x28fz75ai39vlx0gl5nc2v5zs5"; depends=[]; }; hcp = derive2 { name="hcp"; version="0.1"; sha256="0hhcy70g13kclxv733kgiys7qn5bi28abpkli5n2vj0a58ac333m"; depends=[]; }; hda = derive2 { name="hda"; version="0.2-14"; sha256="0azfxyws7yslcqplfddmdp5ngk91j5h7llvrg77yh5z0kkd09j1b"; depends=[e1071]; }; - hddplot = derive2 { name="hddplot"; version="0.56"; sha256="0s9iijwq8zfvavqq2bkqm2884sg0957ppkggsv6mmm3cbdi2xrlc"; depends=[MASS multtest]; }; - hddtools = derive2 { name="hddtools"; version="0.2.4"; sha256="001cm07jvbxzsp64mkjymnsncyrd6r1nxwhjqkk2mb5ldz0541ir"; depends=[raster RCurl rgdal sp XML zoo]; }; + hddplot = derive2 { name="hddplot"; version="0.57-2"; sha256="1mckgd99wvxbqvpyx231r97kysppnn1xggy8jvnc31sxq8m9gfr7"; depends=[MASS multtest]; }; + hddtools = derive2 { name="hddtools"; version="0.5"; sha256="1cihc3kn8nvcj0z314b7md02xb108xkrnz1j4svr6hcxwxvv97c5"; depends=[gdata Hmisc raster RCurl rgdal rnrfa sp stringr XML zoo]; }; hdeco = derive2 { name="hdeco"; version="0.4.1"; sha256="04nggwckvn1kwi238qd33l4pryzn4aq5bmi30bvfi99gwnrlgfgq"; depends=[]; }; hdi = derive2 { name="hdi"; version="0.1-6"; sha256="1lzy4jcz14j1qi6z4j1sq7z3z75n8jygnzlvqjf45vn1sqil17cq"; depends=[glmnet linprog MASS scalreg]; }; - hdlm = derive2 { name="hdlm"; version="1.2"; sha256="0s4lzg3s2k7f7byygb11s7f78l3rkkb0zn03kh3d7h8250wg9fax"; depends=[foreach glmnet iterators MASS]; }; - hdm = derive2 { name="hdm"; version="0.1.0"; sha256="10iy6k9gkqm1lx0clin3a5fb1sjxbgrcfx1y6mzkr7kms1a3amdp"; depends=[checkmate ggplot2 glmnet MASS]; }; - hdnom = derive2 { name="hdnom"; version="3.0"; sha256="1cp5104ck7cb4gsqfqnafza87rfd8zylwns2yz0cv4z1mw1z7p7j"; depends=[foreach ggplot2 glmnet gridExtra ncvreg penalized rms survAUC survival]; }; + hdlm = derive2 { name="hdlm"; version="1.3.1"; sha256="1zl6bksw0apkmn5shf8qjpxjyx6vb40dc4m4db76hhn5nhcp10ic"; depends=[foreach glmnet iterators MASS Matrix]; }; + hdm = derive2 { name="hdm"; version="0.2.0"; sha256="01zd3b44c0rnwxwxcmsgj7w0clq4h7wrlzy4yiwvxcifiv8mgp8l"; depends=[checkmate Formula ggplot2 glmnet MASS]; }; + hdnom = derive2 { name="hdnom"; version="4.6"; sha256="0hp8sd4xcwcmrs1a7idnhkq7fawvajg35v5mzv2dfa69xdga740h"; depends=[foreach ggplot2 glmnet gridExtra ncvreg penalized rms survAUC survival]; }; + hdpca = derive2 { name="hdpca"; version="1.0.0"; sha256="1sv7caw4nhpcvsb7fxpvf2b5zskvfsv004hrqc51b5jx4fsc7y92"; depends=[boot lpSolve]; }; + hdr = derive2 { name="hdr"; version="0.1"; sha256="0dgp4442mfvri8vhicp02nrv55z13r6664x2nlcq6vh6xz9pqyl0"; depends=[httr]; }; hdrcde = derive2 { name="hdrcde"; version="3.1"; sha256="027nxpzk1g0yx8rns7npdz30afs5hwpdqjiamc7yjrsi0rzm71lw"; depends=[ash KernSmooth ks locfit mvtnorm]; }; + hds = derive2 { name="hds"; version="0.8.1"; sha256="1smg5ixrl7f2x3wn7s5i26dyadn5sigpf4jsk236z1bhnz617ax4"; depends=[survival tensor]; }; + healthcareai = derive2 { name="healthcareai"; version="0.1.11"; sha256="05vh4ny7nb3fzfvs46hff4d2ay6q44bzgwx3s81dvdvkha2bmq4q"; depends=[caret data_table doParallel e1071 grpreg lme4 lubridate pROC R6 ranger ROCR RODBC]; }; heatex = derive2 { name="heatex"; version="1.0"; sha256="0c7bxblq24m80yi24gmrqqlcw8jh0lb749adsh51yr6nzpap6i9n"; depends=[]; }; heatmap_plus = derive2 { name="heatmap.plus"; version="1.3"; sha256="0rzffm15a51b7l55k0krk6w7v8czy3vpwz1qmbybr7av0pln7wn3"; depends=[]; }; heatmap3 = derive2 { name="heatmap3"; version="1.1.1"; sha256="14zkij0gr9awzic71k2j7pniamkywfvwrifdk7jbds70zsi30ph5"; depends=[fastcluster]; }; - heatmapFit = derive2 { name="heatmapFit"; version="2.0.2"; sha256="00p39y6x13yxrxfqx6gzmb80fk1hsyi8wa6brx40hj37pyyfis0p"; depends=[]; }; - heavy = derive2 { name="heavy"; version="0.3"; sha256="0vghk0f1h7qvjs2k41vwh0zq54njdh99gz8cpsbp8pk17xsmv3lv"; depends=[]; }; - heemod = derive2 { name="heemod"; version="0.3.0"; sha256="1m90b3mgjfxfnicjxwszhg3zl496sq12wzldarj2ah8pjhkx7xlz"; depends=[diagram dplyr DT ggplot2 lazyeval logitnorm memoise mvnfast rgho tidyr]; }; + heatmapFit = derive2 { name="heatmapFit"; version="2.0.4"; sha256="1rswp1wp58f21fpyjybcvvmnn53kr54ij83hp05qbvl7yn1fsnrb"; depends=[]; }; + heatmaply = derive2 { name="heatmaply"; version="0.7.0"; sha256="1s4qcwmv6la6p3vcxp67nvlbbkd92zj1jagj8vwgk46pykqwr1h5"; depends=[colorspace dendextend GGally ggplot2 magrittr plotly reshape2 scales seriation viridis]; }; + heavy = derive2 { name="heavy"; version="0.38"; sha256="0swrn7vvs682k8yhvi49sfs1zpivhjlh7kfcjnk14i2jp1yk2slz"; depends=[]; }; + heemod = derive2 { name="heemod"; version="0.8.0"; sha256="0wzwqb2rj578zlr3nfwmcw3m3dx9rv5v8wlqyn4x2504d3i7g4yv"; depends=[dplyr ggplot2 lazyeval memoise mvnfast pryr rgho tibble tidyr]; }; hellno = derive2 { name="hellno"; version="0.0.1"; sha256="1j787rw9hh75bvkckmlz5xkgwc22gd7si3mgjd7v60dd6lykfa88"; depends=[]; }; helloJavaWorld = derive2 { name="helloJavaWorld"; version="0.0-9"; sha256="1a8yxja54iqdy2k8bicrcx1y3rkgslas03is4v78yhbz42c9fi8s"; depends=[rJava]; }; - helsinki = derive2 { name="helsinki"; version="0.9.27"; sha256="1vhzlxjkk2hgzjlin9ksvjk3bi2ly5nm4361777m49lb84ncs7dr"; depends=[maptools RCurl rjson sp]; }; - heplots = derive2 { name="heplots"; version="1.0-16"; sha256="00aj3x864zlzyj52yya7wajjnpwmpgicqvgyx71gnxdkqmv64x40"; depends=[car MASS]; }; - hergm = derive2 { name="hergm"; version="2.2-2"; sha256="0jshhf57kybrayk94vv7p1sjvhlfcdya6jllaj9kgn46kkvci54p"; depends=[ergm latentnet network sna]; }; - heritability = derive2 { name="heritability"; version="1.1"; sha256="05vcprf3rk65197njnhw7n5l19hvy7hfp4fdigkwzvch4rnicidf"; depends=[MASS]; }; + helsinki = derive2 { name="helsinki"; version="0.9.29"; sha256="0bn5iyxjn9qs6f0dmhv51ssayywbx1rayh80zbzk0gsm94nhs0d9"; depends=[maptools RCurl rjson sp]; }; + heplots = derive2 { name="heplots"; version="1.3-3"; sha256="0j644a0r4ycfg57p9ymlb3jb9bd797vwlw1ps24injsz71wbhnh0"; depends=[car MASS]; }; + hergm = derive2 { name="hergm"; version="3.1-0"; sha256="17mxn2ff7yzj95vjsppvz7c9a5g6a2z9zyf34xvvxp9031zhrf46"; depends=[ergm latentnet mcgibbsit network sna]; }; + heritability = derive2 { name="heritability"; version="1.2"; sha256="18snrfsjj5jw5qicj92d5qch9v4ciqw1hbiwg6q8kfjka9nmqpma"; depends=[MASS]; }; hermite = derive2 { name="hermite"; version="1.1.1"; sha256="0ns8l1rf346qxalfdwc7ny0kjp212f6qnnlgillpyvd8k29kg8iy"; depends=[maxLik]; }; het_test = derive2 { name="het.test"; version="0.1"; sha256="08kxp81dx32anh0k5b65x7w7madwnn9hiabdrk6ck6b6mx37x26v"; depends=[vars]; }; + hetmeta = derive2 { name="hetmeta"; version="0.1.0"; sha256="023bdjsv0ibisz47vaap9yamzjna4hhndk3haw2g1cm92wnrdra5"; depends=[metafor]; }; hett = derive2 { name="hett"; version="0.3-1"; sha256="1y0hr9g2pjwzc5azh095h33qidxhhmlvd1csamjnhwdphj5drzz0"; depends=[lattice MASS]; }; + heuristica = derive2 { name="heuristica"; version="1.0.1"; sha256="1myivlqw6a8wh97ma9lrpgvaqb0vn4kj8yp9r4z5vc4pxgmm48g6"; depends=[Hmisc]; }; hexView = derive2 { name="hexView"; version="0.3-3"; sha256="0cx5hl70sk1wk24na21vjyv50b2358z1plvvcw604qf1zij4icwn"; depends=[]; }; hexbin = derive2 { name="hexbin"; version="1.27.1"; sha256="0xi6fbf1fvyn2gffr052n3viibqzpr3603sgi4xaminbzja4syjh"; depends=[lattice]; }; + hextri = derive2 { name="hextri"; version="0.6"; sha256="05rvigi225npncbr1brc6apc7gsg9a5jzcbmhvflwp3hbcg3hn02"; depends=[FNN hexbin]; }; hflights = derive2 { name="hflights"; version="0.1"; sha256="1rb6finck13i6949i6hsgfk90q4ybxh1m3is2mlw2m6087bpzfbd"; depends=[]; }; hgam = derive2 { name="hgam"; version="0.1-2"; sha256="1flcc67n8kbh9m5phdfl587xg1x935zbp305y0gdmkc8vpkiwpcf"; depends=[grplasso lattice rgl]; }; hglasso = derive2 { name="hglasso"; version="1.2"; sha256="1qq41ma33wz7qjs5zx72yvngpsiq62z9sd6d5hvvl83brq0fcr4b"; depends=[fields glasso igraph mvtnorm]; }; hglm = derive2 { name="hglm"; version="2.1-1"; sha256="1vr1332db60fqbck0nplfw5dnxpb7sa3irh80k2hyx4aw74ckr2k"; depends=[hglm_data MASS Matrix]; }; hglm_data = derive2 { name="hglm.data"; version="1.0-0"; sha256="1hrq1jac658z5xjsg03nfkb4kwm9z44bhciv5chk74ww8gjr9j9q"; depends=[MASS Matrix]; }; - hgm = derive2 { name="hgm"; version="1.11"; sha256="1p6391bcvsgf2mvkdrwc3fj3h6hkzshqmzb6f31kmpiihjwv3392"; depends=[deSolve]; }; - hht = derive2 { name="hht"; version="2.1.2"; sha256="10lpndwpddcqxyrk9pq9dwaqpj4apxdic971nd68cn3pql6fssdn"; depends=[EMD fields spatstat]; }; + hgm = derive2 { name="hgm"; version="1.16"; sha256="1jgci5fg5fk867qvjgdlqr20spymjqxrypyp58jkfkjjrx1jpjsa"; depends=[deSolve]; }; + hht = derive2 { name="hht"; version="2.1.3"; sha256="022a8zz2m34q89h29jglfj21knlqd8dwi85qmsi78ly1vacnzap8"; depends=[EMD fields spatstat]; }; hiPOD = derive2 { name="hiPOD"; version="1.0"; sha256="1i15ickz2s0kffh99qq30pl5hsl0lbj0kp55jnbv4x72hndzhmla"; depends=[rgl]; }; hiddenf = derive2 { name="hiddenf"; version="2.0"; sha256="0shc1kfiq527mkc5i97zcm51hsvknnhjg7dyfvbfqyk145v6sz00"; depends=[]; }; hier_part = derive2 { name="hier.part"; version="1.0-4"; sha256="03acdgzkhbk4p0wxw2g1hzklmq9hzmdkkvfj742vzfswdd803yg9"; depends=[gtools]; }; hierDiversity = derive2 { name="hierDiversity"; version="0.1"; sha256="1n4jg003h9hvr2n43jwxgfpazvc5ij5lqvspxi49w8fpzpcrqrjj"; depends=[]; }; hierNet = derive2 { name="hierNet"; version="1.6"; sha256="08lifk92caa4l9nfb89rl6vby8sd1ba3ay7z29ffirsg7cx07qiw"; depends=[]; }; hierarchicalDS = derive2 { name="hierarchicalDS"; version="2.9"; sha256="0ckxy4pww5iik4m4kqs714f00g7lfzsarjdbpd0bcalvq4lmaal2"; depends=[coda ggplot2 Matrix mc2d mvtnorm rgeos truncnorm xtable]; }; + hierarchicalSets = derive2 { name="hierarchicalSets"; version="1.0.2"; sha256="0m5mnx1zmiscj0k1gnljr7fla4y1qhysi32a8q9jlah2q7grk7x9"; depends=[ggdendro ggplot2 gtable MASS Matrix RColorBrewer Rcpp scales]; }; hierband = derive2 { name="hierband"; version="1.0"; sha256="0d95hrgkd8b5sww3wsgs6v9zg9pm71ick8x8kj8d6vyib350h6yn"; depends=[]; }; + hierformR = derive2 { name="hierformR"; version="0.1.0"; sha256="0ym6i5ajp55mmk085slmma3g5xqgdk0d0gba28fdg3csxsxl9w1r"; depends=[igraph]; }; hierfstat = derive2 { name="hierfstat"; version="0.04-22"; sha256="1fav2v2996v5kb1ffa6v5wxfm921syxg6as034vd3j4jfhdibyfx"; depends=[ade4 adegenet gtools]; }; hiertest = derive2 { name="hiertest"; version="1.1"; sha256="17maf1w4vkqknxff3f00fzv136j3dbbigyzl4vq4sln9j27w10r3"; depends=[]; }; highD2pop = derive2 { name="highD2pop"; version="1.0"; sha256="1s4v6m2d3vzvxsgmjzczv1zj3kv3ygvv6gbkkbjwsdhkvc1rdmf0"; depends=[fastclime]; }; + highSCREEN = derive2 { name="highSCREEN"; version="0.1"; sha256="0g2pcxdg5fix63jqpddqnldalg95x7ghvmbfr1ijjwi9m3ki2bby"; depends=[gplots]; }; highTtest = derive2 { name="highTtest"; version="1.1"; sha256="18hgxlr0y8y1d4ldqmfcg4536lhyn5p6w88sq1vj74qr5wzydga1"; depends=[]; }; - highcharter = derive2 { name="highcharter"; version="0.2.0"; sha256="114ds4lxqgxcv1lhbk01brk9mzs7jc6c0lmcr9pl1kwff5qj9zgz"; depends=[assertthat dplyr htmlwidgets magrittr purrr quantmod rlist stringr tidyr viridisLite xts zoo]; }; - highfrequency = derive2 { name="highfrequency"; version="0.4"; sha256="0kzadnkvmxcrb8flsxlx8vd9c2yad7hh1pij05dhdcpaidrc9acq"; depends=[xts zoo]; }; + highcharter = derive2 { name="highcharter"; version="0.5.0"; sha256="1myypff80mxcgc3j0sflalhqz344c2zz2p90aarli1pbys9v8ynp"; depends=[assertthat broom dplyr htmltools htmlwidgets igraph jsonlite lubridate magrittr purrr quantmod rlist stringr tibble tidyr xts zoo]; }; + highfrequency = derive2 { name="highfrequency"; version="0.5"; sha256="1csyfvhll1pvqaw5g6iqm55raxlcflc2wf86g0m1gv3x5iw7qjsv"; depends=[BMS chron cubature FKF MASS mvtnorm numDeriv quantmod robustbase rugarch sandwich timeDate xts zoo]; }; highlight = derive2 { name="highlight"; version="0.4.7"; sha256="1gpwj4phq45hhx4x6r8rf6wc6ak6y4fkbad9v23fl8wldb4a8dyg"; depends=[]; }; - highmean = derive2 { name="highmean"; version="2.0"; sha256="126kh0bql0yjakacm0wxxjrfz0x8x9hlyb9j0mrjb4dnggji21j3"; depends=[MASS mnormt mvtnorm]; }; - highr = derive2 { name="highr"; version="0.5.1"; sha256="11hyawzhaw3ph5y5xphi7alx6df1d0i6wh0a2n5m4sxxhdrzswnb"; depends=[]; }; + highlightHTML = derive2 { name="highlightHTML"; version="0.1.1"; sha256="0kjs01ml4v57956rk3ch8y8kxni36gymkf830skxh4fj4nsr8hs1"; depends=[]; }; + highmean = derive2 { name="highmean"; version="3.0"; sha256="1lq7z0l1737j4wvsy7951405afylyywp7vf2i7girzh459fdfzpc"; depends=[MASS mnormt mvtnorm]; }; + highr = derive2 { name="highr"; version="0.6"; sha256="0n9v44dxdy5fhkdmpbpa2p78whyd9z3rhhy42ipdz5m5vsr55qa3"; depends=[]; }; highriskzone = derive2 { name="highriskzone"; version="1.3-1"; sha256="1jw2kf9i81h1chgbdhzw1hh3aq2hfiay58jkyzn4rdwmw21jkgs5"; depends=[deldir fields ks Matrix rgeos spatstat]; }; hillmakeR = derive2 { name="hillmakeR"; version="0.2"; sha256="1baynibgn4xqmpsxna8irggxvdc484mq5nza00rwg58vh1bc7wzq"; depends=[]; }; hindexcalculator = derive2 { name="hindexcalculator"; version="1.0.0"; sha256="06b4dn629avmnyqxb0l39m00wz9cg9dddmm6qhgwgnzlxh14ifgk"; depends=[]; }; hint = derive2 { name="hint"; version="0.1-1"; sha256="1n18j2hcb1qynhsln10nzryi20l5aqhr7i1aanww10y5dz573zi3"; depends=[]; }; hisemi = derive2 { name="hisemi"; version="1.0-319"; sha256="0pm7dsaaqrdhkvxsk2cjvk6qd2rqqmddmv012smnrivi7mpnvd4w"; depends=[fda Iso Matrix]; }; - hisse = derive2 { name="hisse"; version="1.5"; sha256="14vyzc3dg5bdq17762kl1dqlh20ldnzv27ml0i9s5hrgk5235v44"; depends=[ape data_table deSolve GenSA phytools subplex]; }; - histmdl = derive2 { name="histmdl"; version="0.5-1"; sha256="085m6g7ykg3n89pwvagdjhpgcxy68wdq7jmmc2aja1qigq9kjhri"; depends=[]; }; - histogram = derive2 { name="histogram"; version="0.0-23"; sha256="0hrhk423wdybqbvgsjn7dxgb95bkvmbh573q1696634hvzfdm68c"; depends=[]; }; + hisse = derive2 { name="hisse"; version="1.8.1"; sha256="0vdl61ylnv4f77hrpv68xf2ssjczynpmyla4pgsxhyp1r65l6in8"; depends=[ape data_table deSolve GenSA nloptr phytools subplex]; }; + histmdl = derive2 { name="histmdl"; version="0.6-1"; sha256="0vgfy49hrjcm3f8l2hb0fbn1ydh94g4xq2s116yf2c9pd0pwsbi1"; depends=[]; }; + histogram = derive2 { name="histogram"; version="0.0-24"; sha256="1jihw92zi5a4dj6lzm1qvkynv9fp6j5iy83g8rzikp276x63nb62"; depends=[]; }; historydata = derive2 { name="historydata"; version="0.1"; sha256="1h69x3iig542d43p9zm8x83p4dq48iwsw606j4fndnqhx99vzkw6"; depends=[]; }; - hit = derive2 { name="hit"; version="0.2-1"; sha256="17dry6ha261z9a2v6iwfsij8wgivhfg991pfkjwv6ysjfiwy8wds"; depends=[glmnet Rcpp speedglm]; }; - hitandrun = derive2 { name="hitandrun"; version="0.5-2"; sha256="0451rdnp3b4fcdv4wwdxv3wplkxqmidxh4v5n1jjxinnzvl5dv9a"; depends=[rcdd]; }; + hit = derive2 { name="hit"; version="0.4.0"; sha256="1vyla7jlg61rlrmqjb1wya404xj90xys175h12qy30paxsl5icqz"; depends=[glmnet Rcpp speedglm]; }; + hitandrun = derive2 { name="hitandrun"; version="0.5-3"; sha256="0cmn8rzgksnygqwa5pngbdc6pds3kxx4y7mq3mg3xk1vys9b6r4n"; depends=[rcdd]; }; hive = derive2 { name="hive"; version="0.2-0"; sha256="0ywakjphy67c4hwbh6prs4pgq5ifd8x8inxjkigjiqz6jx3z852v"; depends=[rJava XML]; }; + hkclustering = derive2 { name="hkclustering"; version="1.0"; sha256="1xzzrvm847n1k2q2sg5dir5wgnix76arq4my211y8l0n1d5b2q38"; depends=[cluster]; }; + hkevp = derive2 { name="hkevp"; version="1.1.4"; sha256="01m5yywi4vjnwhdayaqaqcp5lz70mllj5ifnwdb4c60wm9aby9pm"; depends=[Rcpp RcppArmadillo]; }; + hkex_api = derive2 { name="hkex.api"; version="0.1"; sha256="0hqwihlrppchpaz2yaq92gf779yi5k8n7sxy1kbpjxs2qc18xvj2"; depends=[httr RCurl XML]; }; hmeasure = derive2 { name="hmeasure"; version="1.0"; sha256="0wr0xq956glmhvy4yis3qq7cfqv9x82ci9fzx3wjvaykd16h0sx9"; depends=[]; }; - hmm_discnp = derive2 { name="hmm.discnp"; version="0.2-3"; sha256="1r9xxgsqh5pw9incldaxnsqhyanhd4jwm6w0ix1k43i53dw4diyr"; depends=[]; }; + hmm_discnp = derive2 { name="hmm.discnp"; version="0.2-4"; sha256="096flx2b9s66dasqj05zrkxsmg3lj6j5w0pwrw3b1qkpp9dvlrkb"; depends=[]; }; hmmm = derive2 { name="hmmm"; version="1.0-3"; sha256="0yjx5i13jbv7vzxn84m6305124ri7jnym0bxbdj46s6l7lw025a9"; depends=[MASS mvtnorm quadprog]; }; - hnp = derive2 { name="hnp"; version="1.2"; sha256="1qpvdhyp62mrr5cldpnh0qlfjfkilpzqdzqq9r9rjnm4q7241r7q"; depends=[MASS]; }; + hms = derive2 { name="hms"; version="0.3"; sha256="127znf522r5mn3k6frhdd7pqh063bs3l85gn9h7cx50hpjf2as4k"; depends=[]; }; + hnp = derive2 { name="hnp"; version="1.2-2"; sha256="0wcr472a6iq3zwzddqpjv649rx9c5ssrlj0qhbv4pn4sjfjv0pfx"; depends=[MASS]; }; hoa = derive2 { name="hoa"; version="2.1.4"; sha256="15klcpmja4afwmpfxrxgrfis0vj7fil8k15jc3p0lqz3dhvq0dvf"; depends=[statmod survival]; }; - hoardeR = derive2 { name="hoardeR"; version="0.1"; sha256="1a3kf676mchrla9g0b619dx09ihxvlmahgwlbwqny6zwr49w7vzl"; depends=[httr MASS R_utils stringr XML]; }; + hoardeR = derive2 { name="hoardeR"; version="0.9.2"; sha256="0sss3ki2w0aqyp084pprycw8d8vgm60z41iq6g9nxhqhr9xy5kdw"; depends=[bamsignals Biostrings data_table GenomicRanges GenomicTools httr IRanges MASS R_utils RCurl Rsamtools seqinr stringr XML]; }; holdem = derive2 { name="holdem"; version="1.1"; sha256="07h4cbg7hx91hc6ypi6hbalzdd9qz9rfhjgk5sq1srnangwwnxlw"; depends=[]; }; homals = derive2 { name="homals"; version="1.0-6"; sha256="1xfpb6mxfk18ad2fggljr2g01gy4c290axc3vgwngmmimmcvh4cy"; depends=[ape rgl scatterplot3d]; }; - homeR = derive2 { name="homeR"; version="0.1"; sha256="0yq93b3wkgbnwzpyhx9c73sb9xgz7m3z4p5rflk3lmc0p53h81g5"; depends=[]; }; + homeR = derive2 { name="homeR"; version="0.3.0"; sha256="0gi383392rs7snb2l9760vkws5hqfikyaj3i7cyby9g1sc2s6yx8"; depends=[]; }; homomorpheR = derive2 { name="homomorpheR"; version="0.1-1"; sha256="0bisbaglv6l8nzcvl9arly9ns2hwyjj6bwplaf6ynyac7fgmmd6j"; depends=[gmp R6 sodium]; }; homtest = derive2 { name="homtest"; version="1.0-5"; sha256="1lnqlg3dwq174ic6dbjllysw5fjy5kvvgbl6gvabjmcs66z27fp0"; depends=[]; }; - hopbyhop = derive2 { name="hopbyhop"; version="1.0"; sha256="1nr4g9nz9lkkxi4glyi1ka0k4pz9vapv0k10k1ngqm0cqy64xsgn"; depends=[]; }; + hopbyhop = derive2 { name="hopbyhop"; version="2.1"; sha256="0j4m1zz0ijf1kw2m12g7bww3418b8pyjvvrzkm8xcryjil2xfmim"; depends=[]; }; + horizon = derive2 { name="horizon"; version="1.0"; sha256="1wrp5qr1qql21xwcjh415q67z2ym4790zfp0n81360v6bp2b3hyy"; depends=[raster]; }; hornpa = derive2 { name="hornpa"; version="1.0"; sha256="0pfvk2jkrwgvshgq9g55qijgpjh0677rpbya0r8759n92v3axbp4"; depends=[]; }; + horseshoe = derive2 { name="horseshoe"; version="0.1.0"; sha256="19khsr7gfcygqasjswvm0v0ddna1i1grfbhars8jlvybfawswhgx"; depends=[]; }; hot_deck = derive2 { name="hot.deck"; version="1.1"; sha256="13pfgcyqaf5ik3pi8vgm06xmqli4hgslzlmhy1zi951anzdr49bd"; depends=[mice]; }; hotspot = derive2 { name="hotspot"; version="1.0"; sha256="0a4w5d6rg324hd06lfwr1hxf6bwr10n55s3ynz5bpkh9c61yik3n"; depends=[]; }; hotspots = derive2 { name="hotspots"; version="1.0.2"; sha256="1cwcwin86y7afjhs8jwlz1m63hh70dcjag0msds4ngksvjh9gj2q"; depends=[ineq lattice]; }; @@ -4749,64 +5926,79 @@ in with self; { hpcwld = derive2 { name="hpcwld"; version="0.5"; sha256="17k4mw41gygwgvh7h78m0jgzh1bivrvrsr8lgxxw3sbkw88lwb40"; depends=[multicool partitions]; }; hpoPlot = derive2 { name="hpoPlot"; version="2.4"; sha256="176bf93gjwbi2z7nz81w4aycwax6f7jxvs3236zrmf0f0f4m7bkc"; depends=[functional magrittr Rgraphviz]; }; hqmisc = derive2 { name="hqmisc"; version="0.1-1"; sha256="0jcy2hb3dmzf9j4n92aq7247mx9w7n30wpsx0dkchqnjwlqwwncw"; depends=[]; }; - hqreg = derive2 { name="hqreg"; version="1.2"; sha256="1rcna9brzyzxhg50f5g1pjhyd9c8s2pvzajzavh9f81lyfjfzpyd"; depends=[]; }; + hqreg = derive2 { name="hqreg"; version="1.4"; sha256="1j6zp3rmpjx409vm7kq159mlawg87wsq0ypdkan34yxxv9py2jmi"; depends=[]; }; hrr = derive2 { name="hrr"; version="1.1.1"; sha256="17jzsgh2784y7jdwpa50v7qz99dw6k2n25sisnam6h1a39b96byn"; depends=[]; }; - hsdar = derive2 { name="hsdar"; version="0.4.1"; sha256="10x8488alik3yy09v0slr9lrgymxwnd9w9q7zyxx7ir1p0ijgjgr"; depends=[caret raster rgdal rootSolve signal]; }; + hsdar = derive2 { name="hsdar"; version="0.5.1"; sha256="0n5d05f7bh9zsjipfzf07yx71ccqdkarmmm4a1ryah7sjlg0zpil"; depends=[caret raster rgdal rootSolve signal]; }; hsicCCA = derive2 { name="hsicCCA"; version="1.0"; sha256="1d4lkjrihwhl3jrsj7250ccd90nfwpllyavc3mp15fhcy2jnjci8"; depends=[]; }; + hsm = derive2 { name="hsm"; version="0.1"; sha256="1dacsq2f23bz94rh4s3477hs38pbrpz2lis4s1l9im894bcbny1x"; depends=[]; }; hsmm = derive2 { name="hsmm"; version="0.4"; sha256="1fh8c5kfv4brygdq6bfkrhrhkm99mxl4ljb1mhp9nf2bjlla11mc"; depends=[mvtnorm]; }; hsphase = derive2 { name="hsphase"; version="2.0.1"; sha256="1z7yxbknldxn780dxw9xz984b3i8pj5hmdnbynvxc5k0ss8g7isy"; depends=[Rcpp RcppArmadillo snowfall]; }; - htmlTable = derive2 { name="htmlTable"; version="1.5"; sha256="1pjmxh3w0iarfzm9krhdqc1931mvcfq4262rmdmpfmq0r1is7qgi"; depends=[knitr magrittr stringr]; }; - htmltab = derive2 { name="htmltab"; version="0.6.0"; sha256="00171fsdgv3rks6j4i5w8rbk2kar2rbmqqpqrr2xdxkjqxsf6k4b"; depends=[httr XML]; }; + htdp = derive2 { name="htdp"; version="0.1.4"; sha256="0w579qp0p544xryb5r08m1nhqf7rmgv9q0lyx6my4av62l70ka5w"; depends=[Rcpp]; }; + htmlTable = derive2 { name="htmlTable"; version="1.9"; sha256="0ciic1f4iczq14j81fg7kxibn65sy8z1zxkvk1yxnxxg6dzplj2v"; depends=[checkmate htmlwidgets knitr magrittr stringr]; }; + htmltab = derive2 { name="htmltab"; version="0.7.1"; sha256="0lymagm7z6zn0ddygqxi831ikk74112lkqkbvs5j1djhmr359ajc"; depends=[httr XML]; }; + htmltidy = derive2 { name="htmltidy"; version="0.3.1"; sha256="004a2wwsnx3mnm6v1mjlaq08gcgm60xahh520vfyrsp56b7j29ky"; depends=[htmltools htmlwidgets Rcpp XML xml2]; }; htmltools = derive2 { name="htmltools"; version="0.3.5"; sha256="0j9bf80grd6gwh7116m575pycv87c0wcwkxsz3gzzfs4aw3pxyr9"; depends=[digest Rcpp]; }; - htmlwidgets = derive2 { name="htmlwidgets"; version="0.6"; sha256="1sljs7zajzj1lsrrvqv7anpma4plzs79mqwmw7b2c5d7mn9py8lw"; depends=[htmltools jsonlite yaml]; }; - hts = derive2 { name="hts"; version="4.5"; sha256="1bjribmfczkx139z73b0cl3lzlw5n2byyyc5inqv9qgayz0dc6cp"; depends=[forecast Matrix Rcpp RcppEigen SparseM]; }; + htmlwidgets = derive2 { name="htmlwidgets"; version="0.8"; sha256="1df3pwl34rvdbr9sgr5h27q9bmqpckvpwq4frl3d1v614y3vfclj"; depends=[htmltools jsonlite yaml]; }; + hts = derive2 { name="hts"; version="5.0"; sha256="130kyc4ygym53gsr8r8n35wrhx2yb3slf1yjs9cdyrqzxwsggfp4"; depends=[forecast Matrix matrixcalc Rcpp RcppEigen SparseM]; }; httk = derive2 { name="httk"; version="1.4"; sha256="1abjb1vg8q4va8g2bfsv537fwrsga83amc9rfsxbdbhzhf2qn0qr"; depends=[deSolve msm]; }; httpRequest = derive2 { name="httpRequest"; version="0.0.10"; sha256="0f6mksy38p9nklsr44ki7a79df1f28jwn2jfyb6f9kbjzh98746j"; depends=[]; }; - httpcache = derive2 { name="httpcache"; version="0.1.2"; sha256="1xphdicgw3zli6naprvn09vh8a0jpsg3nhlwhpwji00p222rnjc4"; depends=[digest httr]; }; - httpcode = derive2 { name="httpcode"; version="0.1.0"; sha256="08x3jnvra833kp625bys04b5np9rrlhqf5gp127df80c289vabwx"; depends=[]; }; + httpcache = derive2 { name="httpcache"; version="1.0.0"; sha256="0p0c2n1n5nrmnii9myp9blzwg996xgm15law9f073an4xvfg2kd2"; depends=[digest httr jsonlite]; }; + httpcode = derive2 { name="httpcode"; version="0.2.0"; sha256="06k853ihwzkcx4z3jzazpb03p91frqkwz18jy4fwr8j2nwyqbhgv"; depends=[]; }; httping = derive2 { name="httping"; version="0.1.0"; sha256="1bhy5mh0hz83rjmvh7wl211nqkz58gxsgkwlkmjrdfzc2cparxjz"; depends=[httpcode httr jsonlite magrittr pryr]; }; + httptest = derive2 { name="httptest"; version="1.1.0"; sha256="0fdsksxdq9y44460zpip0c3fhmlzvjbj9fp11g27k4lh85p042fa"; depends=[digest httr jsonlite testthat]; }; httpuv = derive2 { name="httpuv"; version="1.3.3"; sha256="0aibs0hf38n8f6xxx4g2i2lzd6l5h92m5pscx2z834sdvhnladxv"; depends=[Rcpp]; }; - httr = derive2 { name="httr"; version="1.1.0"; sha256="08sq34pknsfcy8lm06nydi12mbaxpqpgb025ahr33v9d3g0wvh6p"; depends=[curl jsonlite mime openssl R6]; }; + httr = derive2 { name="httr"; version="1.2.1"; sha256="03kkjlhyvvi5znwaxfm6cmdsg3q7ivwsvkzgabhjdj2jxs80pfg7"; depends=[curl jsonlite mime openssl R6]; }; huge = derive2 { name="huge"; version="1.2.7"; sha256="134d951x42vy9dcmf155fbvik2934nh6qm2w5jlx3x2c6cf7faq4"; depends=[igraph lattice MASS Matrix]; }; humanFormat = derive2 { name="humanFormat"; version="1.0"; sha256="0zwjbl8s5dx5d57sfmq6myc6snximc56zl88h8y1s1jqphyn9sir"; depends=[testthat]; }; - humaniformat = derive2 { name="humaniformat"; version="0.5.0"; sha256="18094zlvhd44vg2rg4731f84imrjp69gzay3gnm5yp1scbiqbd82"; depends=[Rcpp]; }; - humarray = derive2 { name="humarray"; version="1.0.0"; sha256="1zza4q8cwcvpy1fgw89zchq7hccdy56phyab2f8x8vsph0gr7kc9"; depends=[BiocGenerics BiocInstaller biomaRt GenomeInfoDb GenomicFeatures GenomicRanges genoset IRanges NCmisc Rcpp reader rtracklayer S4Vectors]; }; - hunspell = derive2 { name="hunspell"; version="1.2"; sha256="0yibb9ic9kkl2h0vwwim0qanhsm0c6xck48i3r158agrqzc49s5x"; depends=[Rcpp]; }; + humaniformat = derive2 { name="humaniformat"; version="0.6.0"; sha256="0vaynjzz57pk4y1liag9lpn9jkag2033a6bkn28zzm7ndg3344l6"; depends=[Rcpp]; }; + humarray = derive2 { name="humarray"; version="1.1"; sha256="1rzx53620nkicnkc41p6pzsiny8kfpw6n3y0mwvckz6ba6iyfl4w"; depends=[BiocGenerics BiocInstaller biomaRt GenomeInfoDb GenomicFeatures GenomicRanges genoset IRanges NCmisc Rcpp reader rtracklayer S4Vectors]; }; + humidity = derive2 { name="humidity"; version="0.1.1"; sha256="0ifxjz7216ld5c4kc9vs83fcijbg5i2z0mwfzszch9j1s734yc8y"; depends=[]; }; + hunspell = derive2 { name="hunspell"; version="2.3"; sha256="1sgjsa9gfq12bf2ld3yqwa18cy8njhvjd1jihbrbzki8z4xl7pjj"; depends=[digest Rcpp]; }; + hurricaneexposure = derive2 { name="hurricaneexposure"; version="0.0.1"; sha256="1j6srqnmdhmg1yg06nqxapdrd9p3yrfs01z0sk43dvjq4dmwmrjr"; depends=[data_table dplyr ggmap ggplot2 lazyeval lubridate maps purrr RColorBrewer stringr tidyr]; }; hwde = derive2 { name="hwde"; version="0.67"; sha256="0wb2f9i5qi7w77ygh8bvydfpr7j5x8dyvnnhdkajaz0wdcpkyaqy"; depends=[]; }; hwriter = derive2 { name="hwriter"; version="1.3.2"; sha256="0arjsz854rfkfqhgvpqbm9lfni97dcjs66isdsfvwfd2wz932dbb"; depends=[]; }; hwriterPlus = derive2 { name="hwriterPlus"; version="1.0-3"; sha256="1sk95qgpyxwk1cfkkp91qvn1iklad9glrnljdpidj20lnmpwyikx"; depends=[hwriter TeachingDemos]; }; hwwntest = derive2 { name="hwwntest"; version="1.3"; sha256="1b5wfbiwc542vlmn0l2aka75ss1673z8bcszfrlibg9wwqjxlwk5"; depends=[polynom wavethresh]; }; hybridEnsemble = derive2 { name="hybridEnsemble"; version="1.0.0"; sha256="08y11cmlhnl456wxsvh3ll1f9ywkmgqjwlwr3v3qhm54nlanwvkr"; depends=[ada AUC e1071 FNN genalg GenSA glmnet kernelFactory NMOF nnet nnls pso quadprog randomForest reportr Rmalschains ROCR rotationForest rpart soma tabuSearch]; }; hybridHclust = derive2 { name="hybridHclust"; version="1.0-5"; sha256="0w06vna66hlmvx10dl1l0nzbnxkd634gxjz26w015f83vpmfc5vz"; depends=[cluster]; }; + hybridModels = derive2 { name="hybridModels"; version="0.2.9"; sha256="1y8793wqd22w042pgz8fnd83pl2jcr6afr6ss600qhphm5h6cig5"; depends=[doParallel foreach ggplot2 GillespieSSA reshape2 stringr]; }; hydroApps = derive2 { name="hydroApps"; version="0.1-1"; sha256="1ycv7l2ywwnx2mgklg6rry7n24jyhi4spvp1xl345yvyn9kf15dz"; depends=[nsRFA]; }; hydroGOF = derive2 { name="hydroGOF"; version="0.3-8"; sha256="1ljk2dk5ydsg7qdizyzkbw0b2zdhnb3x9h965d94ygzg8nw5kbak"; depends=[hydroTSM xts zoo]; }; hydroPSO = derive2 { name="hydroPSO"; version="0.3-4"; sha256="12md94g78m7m1np36sadx0wxpb149pn5gd8yj2kw7fphb8g6a218"; depends=[Hmisc lattice lhs sp zoo]; }; hydroTSM = derive2 { name="hydroTSM"; version="0.4-2-1"; sha256="0z5xw25w2fn67x2dw61msfdnp2dr2s2yi525fcjxn77339x9ksfr"; depends=[automap e1071 gstat sp xts zoo]; }; - hydrogeo = derive2 { name="hydrogeo"; version="0.2-3"; sha256="1kvzpdjrzbxy4rbfhjqmxdipaamd2rjdyxjv6vfxv1ixs1bm8cwm"; depends=[]; }; - hydrostats = derive2 { name="hydrostats"; version="0.2.4"; sha256="16h9gchfrppn5n77bld8b5lhwk45dncfwxxibrmb6m6iclqiadgy"; depends=[]; }; + hydrogeo = derive2 { name="hydrogeo"; version="0.5-1"; sha256="05766n82r6cvk4gnpnfrq28248awzm3y06dnybaymydjh6n1dn73"; depends=[]; }; + hydrostats = derive2 { name="hydrostats"; version="0.2.5"; sha256="1n0wy8i1cfsgmqh898qi0qnqn4qx1srjvd05vmsf9qmhpnnyqw5m"; depends=[]; }; hyfo = derive2 { name="hyfo"; version="1.3.6"; sha256="0d8dhp15h3ajvivb6fq8q83l7nz25a2lc7zx9cwlq6vrkj8ww3ya"; depends=[ggplot2 lmom maps maptools MASS moments ncdf4 plyr reshape2 rgdal rgeos zoo]; }; - hyperSpec = derive2 { name="hyperSpec"; version="0.98-20150304"; sha256="0fjww2h6vlm53dsnaxb3i11cmary1w8l0jr9c5dy16y7n9cc3hqb"; depends=[ggplot2 lattice latticeExtra mvtnorm svUnit]; }; + hyper_fit = derive2 { name="hyper.fit"; version="1.0.3"; sha256="17f5i2i960796hl92y7ci9ffspway435r02kw1zk91lvfn927hng"; depends=[LaplacesDemon magicaxis MASS rgl]; }; + hyperSMURF = derive2 { name="hyperSMURF"; version="1.1.2"; sha256="1jlcfwyqs2mfdixqik5dqb0sl3i9pjxcrwabbcr24z8wnq524zx8"; depends=[doParallel foreach iterators randomForest unbalanced]; }; + hyperSpec = derive2 { name="hyperSpec"; version="0.98-20161118"; sha256="0343prdah83l45z6p2wafmipw2x3f0yshm5hm11wgkkm1cnv5905"; depends=[ggplot2 lattice latticeExtra svUnit]; }; hyperdirichlet = derive2 { name="hyperdirichlet"; version="1.4-9"; sha256="03c2xgfhfbpn1za84ajhvm0i5cpmfnz1makidrr2222addgyp9zx"; depends=[abind aylmer cubature mvtnorm]; }; - hypergea = derive2 { name="hypergea"; version="1.2.3"; sha256="13a8r7f2qq7wi0h7jrg29mn573njzi1rwna0ch9sj8sdy8w26r6w"; depends=[]; }; - hypergeo = derive2 { name="hypergeo"; version="1.2-11"; sha256="0kg7yimgrrcqdzxackslf2zxpdrl3xx3a88irkxlwhf36znwfrdj"; depends=[contfrac deSolve elliptic]; }; + hypergea = derive2 { name="hypergea"; version="1.3.3"; sha256="0spchrbb5y3yx63acs9ns256h7k3nd5wxg8vw258kqlvyapj50l6"; depends=[]; }; + hypergeo = derive2 { name="hypergeo"; version="1.2-13"; sha256="13jdiy216znwhr91iqnh03mvkmyscw439syb3h4i67dd78sphnvd"; depends=[contfrac deSolve elliptic]; }; hypervolume = derive2 { name="hypervolume"; version="1.4.1"; sha256="0gx9ing4h1sg4zzppfa386hllryf8vk1n013yv14c0k3sjjnz456"; depends=[fastcluster geometry ks MASS Rcpp RcppArmadillo rgl]; }; hyphenatr = derive2 { name="hyphenatr"; version="0.3.0"; sha256="0mv77njy0ha7bj3kw620fk9r8cdzqd0v3ipikihqxq47fr57ml0v"; depends=[Rcpp stringi]; }; + hypoparsr = derive2 { name="hypoparsr"; version="0.1.0"; sha256="1bldiz5j6h9z499wwz8cbg5vshdmxgcd8qfxkz1a45q8b6nsd4vf"; depends=[data_tree readr RecordLinkage tibble]; }; hypothesestest = derive2 { name="hypothesestest"; version="1.0"; sha256="0g8sm386m1zm9i3900r62x83wb600cy8hqk7dlvbx6wcgrxg82sm"; depends=[]; }; + hypothesisr = derive2 { name="hypothesisr"; version="0.1.1"; sha256="0z06risagphhvqiw4lrxy52q6q2yr10w2yxsm8iz1wh9ik097pcv"; depends=[dplyr httr jsonlite]; }; hysteresis = derive2 { name="hysteresis"; version="2.5"; sha256="1b1dd2367pjbg4jnn65l2jcj38ljz7adpdg8f5b9rj1rw7qgikfl"; depends=[car MASS msm]; }; hzar = derive2 { name="hzar"; version="0.2-5"; sha256="000l4ki3hvznnhkxc5j422h5ifnsfqalv666j48yby1hsf1lc3kg"; depends=[coda foreach MCMCpack]; }; iBATCGH = derive2 { name="iBATCGH"; version="1.3"; sha256="0pnkkabzi57czcwd9i15nwv8ggwvyxmvn1wam7yrrrbvmi17lmrm"; depends=[msm Rcpp RcppArmadillo]; }; + iBST = derive2 { name="iBST"; version="1.0"; sha256="02p7lcr1wrf21v4568jc8hmjcijy3fnbv77s8nlhv2s4p0pgzh5x"; depends=[Rcpp rpart survival]; }; iBUGS = derive2 { name="iBUGS"; version="0.1.4"; sha256="0vsxy8pnbix0rg7ksgywx7kypqb5ngkxhldh3cisjkvdv638ybps"; depends=[gWidgetsRGtk2 R2WinBUGS]; }; iC10 = derive2 { name="iC10"; version="1.1.3"; sha256="19dlrwj47zmdgmvzjfs5qa9fqq8g9ywhgy5mqbp99n7d9hg4ybxh"; depends=[iC10TrainingData pamr]; }; iC10TrainingData = derive2 { name="iC10TrainingData"; version="1.0.1"; sha256="1x1kgxiib9l7whm2kmbv1s912hgpl7rdpqpn67nlkiswnr27hqn4"; depends=[]; }; iClick = derive2 { name="iClick"; version="1.2"; sha256="04d82wbddvj73cw6ys492nasvxcj8m5594zf9r41y72i5yha11pa"; depends=[fBasics forecast lattice lubridate openair rugarch timeDate timeSeries]; }; iCluster = derive2 { name="iCluster"; version="2.1.0"; sha256="09j36xv87d382m5ijkhmp2mxaajc4k97cf9k1hb11ksk7fxdqz6r"; depends=[caTools gdata gplots gtools lattice]; }; + iDOS = derive2 { name="iDOS"; version="1.0.0"; sha256="1jj98ikzvfp6qbnh2j6msi0m89sbmjjafgry43rq7qmczzs81hl8"; depends=[VennDiagram]; }; iDynoR = derive2 { name="iDynoR"; version="1.0"; sha256="01702vl10191mbq2wby1m0y6h8i6y6ic4pa83d27cg3yccsrhziz"; depends=[vegan XML]; }; iFad = derive2 { name="iFad"; version="3.0"; sha256="0jrl9bayihp3wb4k5w9kc71qlsdxk7vl83ydfibx2bg79c4hf3cs"; depends=[coda MASS Rlab ROCR]; }; - iGasso = derive2 { name="iGasso"; version="1.3"; sha256="17j29jj767wy5zhgbnznlj0jb4azzrl0qdijc11bpwb7apkmyvz8"; depends=[CompQuadForm lattice]; }; - iLaplace = derive2 { name="iLaplace"; version="1.0.0"; sha256="1fwsfx3y44k8xsp1l1n51vqa767ahvk462plgkljdcq4nxa0idvc"; depends=[doParallel foreach iterators Rcpp RcppArmadillo]; }; - iRafNet = derive2 { name="iRafNet"; version="0.1-1"; sha256="1lcrsii4cmbih67wwvndnbbm023n001qy1phg6k76zsm9sizd7a1"; depends=[]; }; + iGasso = derive2 { name="iGasso"; version="1.4"; sha256="17xxqncl5xcphdqclghcazygcgibf8ijdf4kkl3ga11xf70sahj2"; depends=[CompQuadForm lattice]; }; + iJRF = derive2 { name="iJRF"; version="1.1-4"; sha256="1fgbc0z647vwybffzp4iips86pxakd25dlk5jqgm049s6pa8m73v"; depends=[ggplot2]; }; + iLaplace = derive2 { name="iLaplace"; version="1.1.0"; sha256="1z752yw3nvqj1ckf23262phkw849cb5p4m14v108xf2dizyzggxg"; depends=[doParallel fastGHQuad foreach iterators Rcpp RcppArmadillo]; }; + iNEXT = derive2 { name="iNEXT"; version="2.0.12"; sha256="1041r5k0k3kzik5vwyd62s4yc85lnnxbg5gbbl0kl629kikymb6y"; depends=[ggplot2 reshape2]; }; + iRafNet = derive2 { name="iRafNet"; version="1.1-1"; sha256="0w9bry49apkrrrabglnv5w9l47jakmc30jh8q22a8gazwss293fb"; depends=[ROCR]; }; iRefR = derive2 { name="iRefR"; version="1.13"; sha256="17kjfga62xc4s1kii5clxszbag2dr1dyxfm7jasr20prx28ya6pp"; depends=[graph igraph RBGL]; }; - iRegression = derive2 { name="iRegression"; version="1.2"; sha256="1fn25xnrvgx2ayhss136rxn1h3c9pvq2gmb5kbp92vsf07klvh6v"; depends=[mgcv]; }; + iRegression = derive2 { name="iRegression"; version="1.2.1"; sha256="1kwsrmsflmqan96aj0dczlszfww1dlg6rwycyid52f7ghg9810rn"; depends=[mgcv]; }; iRepro = derive2 { name="iRepro"; version="1.0"; sha256="1knncn47pl411r31z1r5ipsiyagcpjbc2gb972n7l3539pcpf0zy"; depends=[]; }; iWISA = derive2 { name="iWISA"; version="1.0-2"; sha256="0jqi1kh7jlc04nb9d1w711q4i8j1vgwbxjls09z7853kv22wxfyz"; depends=[fda ggplot2 waveslim]; }; iWeigReg = derive2 { name="iWeigReg"; version="1.0"; sha256="09ajbqllr4ajmpk8qs6qw019fx8a7vsabm37867zycssn77z9nc8"; depends=[MASS trust]; }; @@ -4814,36 +6006,49 @@ in with self; { ibdreg = derive2 { name="ibdreg"; version="0.2.5"; sha256="1kaa5q1byi30wzr0mw4w2cv1ssxprzcwf91wrpqwkgcsdy7dkh2g"; depends=[]; }; ibeemd = derive2 { name="ibeemd"; version="1.0.1"; sha256="115z13q02gzixziknix2l53mi12zzg30ra9h35pv6qzrr11ra1ic"; depends=[deldir fields rgeos sp spdep]; }; ibelief = derive2 { name="ibelief"; version="1.2"; sha256="1zh6bpg0gaybslr1p05qd5p2y5kxbgyhgha4j4v5d69d78jwgah9"; depends=[]; }; - ibmdbR = derive2 { name="ibmdbR"; version="1.47.1"; sha256="0xxhx0dbz9y4lhnwb0ic14dny0md59izicn12nbsv8040v56kwky"; depends=[arules ggplot2 MASS Matrix RODBC rpart rpart_plot]; }; + ibm = derive2 { name="ibm"; version="0.1.0"; sha256="0g6wg2qpa4q142xw2vq5pca4ll6pb8hyll5g0c93kk8crddk51s7"; depends=[Rcpp]; }; + ibmcraftr = derive2 { name="ibmcraftr"; version="1.0.0"; sha256="0zm5j0a1wjj5agibp38h73qxpq0njvrhfq3077xhhfizcb3v24sb"; depends=[Rcpp]; }; + ibmdbR = derive2 { name="ibmdbR"; version="1.48.0"; sha256="0kz08p61v12kgv1k1zrgh8mimhvnffy2fgck21gxbsa03sdi144i"; depends=[arules ggplot2 MASS Matrix RODBC rpart rpart_plot]; }; ibr = derive2 { name="ibr"; version="2.0-2"; sha256="1v4jn1izdc0cvm0yhr0anz2zjz66i25rg9039327kw8yrx8a34wx"; depends=[mgcv]; }; ic_infer = derive2 { name="ic.infer"; version="1.1-5"; sha256="0nmx7ijczzvrv1j4321g5g5nawzll8srf302grc39npvv1q17jyz"; depends=[boot kappalab mvtnorm quadprog]; }; ic50 = derive2 { name="ic50"; version="1.4.2"; sha256="1a5ddmbdfr3ls132fvalbkh4yaawv9k58rgpy54s5qddrm6aas2s"; depends=[]; }; icRSF = derive2 { name="icRSF"; version="1.0"; sha256="155lgak9jqsy398q5y4fl050gas5hppb25jhc1njglq2h98w3pl2"; depends=[icensmis Rcpp]; }; ica = derive2 { name="ica"; version="1.0-1"; sha256="1bkl4a72l0k6gm82l3jxnib898z20cw17zg81jj39l9dn65rlmcq"; depends=[]; }; icaOcularCorrection = derive2 { name="icaOcularCorrection"; version="3.0.0"; sha256="1vmvarc2apipd0vlhprc5wpgh8i38m5myj1gqdymjrnky0azq17f"; depends=[fastICA mgcv]; }; - icamix = derive2 { name="icamix"; version="1.0.4"; sha256="17yag996m8gn4vfr6a8gcsrancdhjla5bm7fi23p1ln8i4hdz5v5"; depends=[Rcpp RcppArmadillo]; }; + icamix = derive2 { name="icamix"; version="1.0.5"; sha256="1r6rrjha8c1cy7qf682yzkw7i1qxzrcvs8g20vb77mzhzjq6d073"; depends=[Rcpp RcppArmadillo]; }; icapca = derive2 { name="icapca"; version="1.1"; sha256="131gdrk8vsbac0krmsryvsp21bn9hzxqxq847zn16cxjf6y5i3xb"; depends=[]; }; - icarus = derive2 { name="icarus"; version="0.2.0"; sha256="1qj0g4inl76128rjhn6g4w499y1yy75yvq31c408jz6akv8p2921"; depends=[]; }; + icarus = derive2 { name="icarus"; version="0.2.2"; sha256="1bs04j0xdf6b0mvczi8v3jyjdf2g99vfqr9by83a7gl9vpsar4kn"; depends=[]; }; iccbeta = derive2 { name="iccbeta"; version="1.0"; sha256="0zsf2b5nrv39pssi5walf82892fr8p1f802c96hjjknh78q7gh0h"; depends=[lme4 Rcpp RcppArmadillo]; }; - icd9 = derive2 { name="icd9"; version="1.3"; sha256="1k34s7zys2c6v6i7843yh8i5bh3j7axdv9xdlampdfx5pn5g29as"; depends=[checkmate fastmatch Rcpp]; }; - icenReg = derive2 { name="icenReg"; version="1.3.4"; sha256="0s3amjz8vz4y256wj85dg01vxhsyy1njgrsrw3l35z7ka9hxmcdf"; depends=[foreach MLEcens RcppEigen survival]; }; + icd = derive2 { name="icd"; version="2.1"; sha256="1634mpv1cgka8n1ws4lsqw8114q50rjrxcjlw16bq8igi1l4hrwq"; depends=[checkmate magrittr Rcpp testthat]; }; + icd9 = derive2 { name="icd9"; version="1.3.1"; sha256="0yrgg1vf9jf0kv4qbvc0d8n26csxx79g2196ijgq43rhprrrm1y6"; depends=[checkmate fastmatch Rcpp]; }; + icdGLM = derive2 { name="icdGLM"; version="1.0.0"; sha256="1mh9kwn21n19v4lrmj33ghpna7dl66fx19gi6lcjanmrpzrkwdnz"; depends=[Matrix]; }; + icenReg = derive2 { name="icenReg"; version="1.3.6"; sha256="024iwpwbn3g2lsq9kn6p86m1qdj1ndlfakk6hsijc8akg0cmmzcg"; depends=[foreach MLEcens RcppEigen survival]; }; icensmis = derive2 { name="icensmis"; version="1.3.1"; sha256="1c0j43wffb5h99chlj8j45lpan7dpn2i0r4rr6b2kq16p1zabfjw"; depends=[Rcpp]; }; + icesAdvice = derive2 { name="icesAdvice"; version="1.2-0"; sha256="0z3b31qj0wggd2yayvgivrpg9435bi8pmsp11rg2vwz4vfsqvlkb"; depends=[]; }; + icesDatras = derive2 { name="icesDatras"; version="1.2-0"; sha256="0arkn9ma03qb21sv5chmz5fj65da5ivqhvrg8bqibbky8zkix1vh"; depends=[]; }; + icesSAG = derive2 { name="icesSAG"; version="1.2-0"; sha256="05fj1sx9fbpyhmng7llmayc2m0gvfyak6ispjkwrx55hms17i5p9"; depends=[png]; }; + icesVocab = derive2 { name="icesVocab"; version="1.1-2"; sha256="15ha2visv44pphkahg766afafh6467lwznvppwkvqjrbfiijkc6l"; depends=[XML]; }; + icpsrdata = derive2 { name="icpsrdata"; version="0.3.0"; sha256="17sprbbi8fmvcp8d7hwrxl5amg0j036wq483cw62zbmni3p3fl82"; depends=[httr purrr rvest]; }; icsw = derive2 { name="icsw"; version="0.9"; sha256="0lmq9l9sy0fz3yjj2sj8f19iy26913caibf7d9zb9w9n6cqskvlx"; depends=[]; }; idbg = derive2 { name="idbg"; version="1.0"; sha256="1rxmj04hswxybrg7dfib3mjy8v8mdiv13zwbscp2q55z55hhf1m5"; depends=[]; }; - idbr = derive2 { name="idbr"; version="0.1.2"; sha256="1j9qjh5121aaasqd05qi0gw3cglfq355cq8wg23k3m3jcfm7ihh9"; depends=[dplyr httr jsonlite]; }; - idendr0 = derive2 { name="idendr0"; version="1.5.2"; sha256="18fblymbdl1i0sxfv911ls090hkhmwlk0q1dx4fhi54h16qqzjhf"; depends=[tkrplot]; }; - identifyr = derive2 { name="identifyr"; version="0.1"; sha256="011i6s7w7ss6vlyhwdj67hw4pwyvnn3vga89d3ykd3j3h1k615zp"; depends=[magrittr stringr]; }; + idbr = derive2 { name="idbr"; version="0.2"; sha256="1hhwn93arkzqs5ns9ll7rwqq5gyngixbicly9asw0dgjn12n5p7x"; depends=[countrycode dplyr httr jsonlite]; }; + idem = derive2 { name="idem"; version="1.0"; sha256="1knb5m0rczga7j3a58z7fjjn3nva7pihg2w3vh82dqpi8wwcnznj"; depends=[coda sqldf survival]; }; + idendr0 = derive2 { name="idendr0"; version="1.5.3"; sha256="11c12d166bp2i498d8y6ipg5jhz1xsdsrmnhjqnrqqzp9avvrsjp"; depends=[tkrplot]; }; identity = derive2 { name="identity"; version="0.2-1"; sha256="1j5wb5cj5j49in2g6r1shdm4ri4cfzj22hpqazvcmq4dm291sdi9"; depends=[]; }; - idm = derive2 { name="idm"; version="1.3.1"; sha256="1mysvkdkzwdggb081zbjb9bm8jxdygd4q3w50js1x26pr69kvzni"; depends=[animation ca corpcor dummies ggplot2]; }; + idm = derive2 { name="idm"; version="1.7.1"; sha256="1pn8iyfwcpp3zj51jjf0dvfc0rbh8f5smnbswxf186fqs9fkjpmy"; depends=[animation ca corpcor dummies ggplot2 ggrepel]; }; idr = derive2 { name="idr"; version="1.2"; sha256="05nvgw1xdg670bsjjrxkgd1mrdkciccpw4krn0zcgdf2r21dzgwb"; depends=[]; }; + ids = derive2 { name="ids"; version="1.0.0"; sha256="1wwp1phbgj1zcdgyq4fzca8hmgibcc01xmqlnm51nmm0n3ajki2v"; depends=[openssl uuid]; }; + ie2misc = derive2 { name="ie2misc"; version="0.8.5"; sha256="1i59836a3kjsra5ibk66ic35yqk28p3biylall8gngjssiig92c1"; depends=[data_table gWidgets2 gWidgets2tcltk lubridate openxlsx qdap reader readxl stringi]; }; + ie2miscdata = derive2 { name="ie2miscdata"; version="1.0.1"; sha256="1jqh5x5wnfv4cx3ck9k4kxchai7vfb3i968n5nq0yqgbvfii5kli"; depends=[]; }; ieeeround = derive2 { name="ieeeround"; version="0.2-0"; sha256="0xaxrlalyn8w0w4fva8fd86306nvw3iyz44r0hvay3gsrmgn3fjh"; depends=[]; }; - iemisc = derive2 { name="iemisc"; version="0.5.0"; sha256="1xy6nyk5bw9lx9bhfk5l2k3lp9b46anzamfbvhd3cgv94xh03vv2"; depends=[data_table pracma zoo]; }; - iemiscdata = derive2 { name="iemiscdata"; version="0.5.0"; sha256="0xvv5yva2swmr7nziik838wznk30j2j032s6m71xrvdbngr4cpnd"; depends=[]; }; + iemisc = derive2 { name="iemisc"; version="0.9.6"; sha256="0yr2pqklj3qjlmkk2sc5rgi8dfnm9jdaagzh2dhm05lharhfzy6d"; depends=[data_table fpCompare gsubfn iemiscdata pracma r_import zoo]; }; + iemiscdata = derive2 { name="iemiscdata"; version="0.6.1"; sha256="0a9x90kisgmrka0frk9myb1qdq3nl092n78wrif31b42arifa8h9"; depends=[]; }; + iemisctext = derive2 { name="iemisctext"; version="0.9.99"; sha256="02rr7sjjbrvfxwjl87f2ki245a8cw5fvx7z2z4rl8ixxlyxj9p5v"; depends=[]; }; ifa = derive2 { name="ifa"; version="7.0"; sha256="1cxafd7iwvyidzy27lyk1b9m27vk785ipj9ydkyx9z1v0zna2wnl"; depends=[mvtnorm]; }; - ifaTools = derive2 { name="ifaTools"; version="0.8"; sha256="1nmim5dw42wkzjw85g5raz899xa2whlyvz36jcpli69cx0zq3kqq"; depends=[ggplot2 OpenMx reshape2 rpf shiny]; }; + ifaTools = derive2 { name="ifaTools"; version="0.13"; sha256="1mffvlzm4flz7n26vllm28s1iib66gbqq7nl4yfwbdljrpp4ph23"; depends=[ggplot2 OpenMx reshape2 rpf shiny]; }; ifctools = derive2 { name="ifctools"; version="0.3.2"; sha256="18g0l0vh9z4nvl6jil32983c4z1dvawrivi4kz4g562q3habm279"; depends=[]; }; ifs = derive2 { name="ifs"; version="0.1.5"; sha256="03g9cgs0zp89b1d7rpcn5clkvmg0spnariwrifd8hha476ldvfcy"; depends=[]; }; - ifultools = derive2 { name="ifultools"; version="2.0-1"; sha256="16lrmajyfa15akgjq71w9xlfsr4y9aqfw7y0jf6gydaz4y6jq9b9"; depends=[MASS splus2R]; }; + ifultools = derive2 { name="ifultools"; version="2.0-4"; sha256="0pv2msaa1rmj8csxdclzi2jwg9pfdvh87blj9j3xa3myisglq092"; depends=[MASS splus2R]; }; ig_vancouver_2014_topcolour = derive2 { name="ig.vancouver.2014.topcolour"; version="0.1.2.0"; sha256="0yclvm6xppf4w1qf25nf82hg1pliah68z7h3f683svv0j62q748h"; depends=[]; }; igraph = derive2 { name="igraph"; version="1.0.1"; sha256="00jnm8v3kvxpxav5klld2z2nnkcpj4sdwv4ksipddy5mp04ysr6w"; depends=[irlba magrittr Matrix NMF]; }; igraphdata = derive2 { name="igraphdata"; version="1.0.1"; sha256="19w5npa4b8c054v94xlr7nmhhg2fhq4m8jbds86skp8zvipl4rkl"; depends=[]; }; @@ -4851,175 +6056,225 @@ in with self; { igraphtosonia = derive2 { name="igraphtosonia"; version="1.0"; sha256="0vy9jnpjp68l8s0hi1l57j9p41c543h3iqv16pwl550f38zqp8j6"; depends=[igraph]; }; ihs = derive2 { name="ihs"; version="1.0"; sha256="1c5c9l6kdalympb19nlgz1r9zq17575ivp3zrayb9p6w3fn2i06h"; depends=[maxLik]; }; iki_dataclim = derive2 { name="iki.dataclim"; version="1.0"; sha256="1yhvgr8d3j2r8y9c02rzcg80bz4cx58kzybm4rch78m0207wqs7p"; depends=[climdex_pcic lubridate PCICt zoo]; }; - ilc = derive2 { name="ilc"; version="1.0"; sha256="0hs0nxv7cd300mfxscgvcjag9f2igispcskfknb7sn7p8qvwr5ki"; depends=[date demography forecast survival]; }; + ilc = derive2 { name="ilc"; version="1.0"; sha256="0hs0nxv7cd300mfxscgvcjag9f2igispcskfknb7sn7p8qvwr5ki"; depends=[date demography forecast rainbow survival]; }; imPois = derive2 { name="imPois"; version="0.0.7.5"; sha256="15l2air707xnzxvgvzsv90m5pl8vvr9inywvmx7f7irn4syy0g3a"; depends=[geometry rgl]; }; - imager = derive2 { name="imager"; version="0.15"; sha256="0np23g1p097iv9qwbbrk69v2v025f91b30jaqh3621csv7hll095"; depends=[jpeg magrittr plyr png Rcpp stringr]; }; - imguR = derive2 { name="imguR"; version="1.0.1"; sha256="1pabgp1s3gkirxh5a95lmnrzgfdh04s9r63y9v9x43hmqg77jkw3"; depends=[httr jpeg png]; }; - immer = derive2 { name="immer"; version="0.4-0"; sha256="0g757149rmq5v1hwmd2q5fafz09dz5mcg29v5cx4n3p719xzpp8w"; depends=[CDM coda psychotools Rcpp RcppArmadillo sirt]; }; - import = derive2 { name="import"; version="1.1.0"; sha256="0blf9539rbfwcmw8zsb4k58slb4pdnc075v34vmyjw752fznhcji"; depends=[]; }; + imageData = derive2 { name="imageData"; version="0.1-26"; sha256="0r39bp33kki2ddvds2jkpk1r6afl8d1xbl447lnz25dxpzfcajn2"; depends=[dae GGally ggplot2 Hmisc RColorBrewer reshape XLConnect]; }; + imager = derive2 { name="imager"; version="0.31"; sha256="1lknn7lk6g6mda2sqabxkdkv4aryfq1k4f0bmz6ym14y5j7kjlzz"; depends=[jpeg magrittr plyr png purrr Rcpp readbitmap stringr]; }; + imagine = derive2 { name="imagine"; version="1.1.0"; sha256="0xmmm38vwya0dlycky3dllr9j015fbc98bwwcp8k7xmknvvnzz83"; depends=[Rcpp]; }; + imfr = derive2 { name="imfr"; version="0.1.3"; sha256="0i25fl8ixq1z2hv3gf1rh5ssnxxzxaxg30wi5ixngwnnwkljxbph"; depends=[dplyr httr jsonlite]; }; + imguR = derive2 { name="imguR"; version="1.0.3"; sha256="14f7ghgc8rbrpqb21rinfbrj1wh80i6ii0awwi814152v5qzj4b3"; depends=[httr jpeg png]; }; + immer = derive2 { name="immer"; version="0.7-0"; sha256="0pf0chrx1qbri0pkiz30pc2qcdmld0ajm7fljadzlnczs3bnr1na"; depends=[CDM coda psychotools Rcpp RcppArmadillo sirt]; }; + imp4p = derive2 { name="imp4p"; version="0.2"; sha256="1bymmfcchhmwdl0gq7x9llhykqzjw74c80x15mxs8dl9ha6fndc5"; depends=[imputeLCMD Iso truncnorm]; }; + r_import = derive2 { name="r_import"; version="1.1.0"; sha256="0blf9539rbfwcmw8zsb4k58slb4pdnc075v34vmyjw752fznhcji"; depends=[]; }; imprProbEst = derive2 { name="imprProbEst"; version="1.0.1"; sha256="09y8yd9sw0b79ca45ryi7p82vy5s8cx0gg603rlc39lgwcdv45i3"; depends=[inline lpSolve]; }; imputeLCMD = derive2 { name="imputeLCMD"; version="2.0"; sha256="10v3iv1iw6mnss6ry836crq9zdgid2y1h3pvigzjsrmnp5n89mfz"; depends=[impute norm pcaMethods tmvtnorm]; }; imputeMDR = derive2 { name="imputeMDR"; version="1.1.2"; sha256="0ds5a4wav9vb9z5nji8hv5l76310rd970xf702fd0ckx1sh6rgd7"; depends=[]; }; - imputeMissings = derive2 { name="imputeMissings"; version="0.0.1"; sha256="1xcgv725xs1vqg5b6psbmsgh7xikb8iasd9n7f8dxrlq3d1p5khv"; depends=[randomForest]; }; - imputeTS = derive2 { name="imputeTS"; version="0.4"; sha256="0prd7wcbikyzzfphqmrhxwgrpvpd129m3hvr217xmclr4gqrknsb"; depends=[stinepack]; }; + imputeMissings = derive2 { name="imputeMissings"; version="0.0.3"; sha256="1dfhi235j1qz2mv89j92b903j5mdwlzisiyvvi9mmiacdj5ln89z"; depends=[randomForest]; }; + imputeMulti = derive2 { name="imputeMulti"; version="0.6.4"; sha256="0ngjbj8pl5mwprrgy234a5p9dhf615z7ymfv8184hby1z6ib3mgl"; depends=[DBI gtools Rcpp RSQLite]; }; + imputePSF = derive2 { name="imputePSF"; version="0.1.0"; sha256="0xfd2mybg0cbi3n35j28s4xq4iwr5rq4mqwgdqml7l2rlzidcwc8"; depends=[PSF]; }; + imputeTS = derive2 { name="imputeTS"; version="1.8"; sha256="1r86fpv51jl1d5lskbx19c0njr5qdn0l8m3xj5brisvf035b7pp4"; depends=[forecast stinepack]; }; + imputeTestbench = derive2 { name="imputeTestbench"; version="3.0.0"; sha256="082ps3r4priv3r5w8gydvkjxp8r3nsrss964hdsff2kc5dsmqn14"; depends=[dplyr forecast ggplot2 imputeTS reshape2 tidyr zoo]; }; imputeYn = derive2 { name="imputeYn"; version="1.3"; sha256="1b21w1aa5f7yiq8k0wa86wvbg4ij7f6ldwn6asfqwb0b90rvsgvs"; depends=[boot emplik mvtnorm quadprog survival]; }; - in2extRemes = derive2 { name="in2extRemes"; version="1.0-2"; sha256="10ngxv4zsh78gm3xwb22m681nhl2qbnzi4fkqwgjj2iz46ychzvy"; depends=[extRemes]; }; + in2extRemes = derive2 { name="in2extRemes"; version="1.0-3"; sha256="1lgsqm29zmjyf8kynyra2p3q7bs4fyd7ac4v6s3pbahzhhzdk94y"; depends=[extRemes]; }; inTrees = derive2 { name="inTrees"; version="1.1"; sha256="1b88zy4rarcx1qxzv3089gzdz1smga6ssj8cxxccyyzci6px85j1"; depends=[arules gbm RRF xtable]; }; inarmix = derive2 { name="inarmix"; version="0.4"; sha256="11a1vaxq22d5lab07jp5pw0znkaqj6bmkn6vsx62y6m4mmqk04yr"; depends=[Matrix Rcpp]; }; - inbreedR = derive2 { name="inbreedR"; version="0.3.1"; sha256="1a5iz5hkwa32nrc205ybjzm6nijr6b38ipyvcivsdz4maz3rlmhf"; depends=[data_table]; }; - indicspecies = derive2 { name="indicspecies"; version="1.7.5"; sha256="16m4pnfnmaskin4aaalm2cmv3vwzg94045max8nhkgw02kpskz1r"; depends=[permute]; }; + inbreedR = derive2 { name="inbreedR"; version="0.3.2"; sha256="09fr13ckyn2skiigkn4qdx5g080gcmyyrvzhcp0wrml9wpmy0h4z"; depends=[data_table]; }; + inca = derive2 { name="inca"; version="0.0.2"; sha256="1wj8f1ga0km9k9zrjcd7g228kw2pp6y6pgnfwmgdd05bx4hzjhdw"; depends=[Matrix Rcpp RcppArmadillo]; }; + incadata = derive2 { name="incadata"; version="0.5.3"; sha256="1mzwd9nida5spsqr5jayp3wn1h3cbv0amc5iyxx6h51gn0pwspkz"; depends=[backports decoder dplyr rccmisc sweidnumbr]; }; + incidence = derive2 { name="incidence"; version="1.1.1"; sha256="03dlgqz6mnayc5lvaalxdhdidzgq49djkd8129ymjmmcg6qwd2h4"; depends=[ggplot2 ISOweek]; }; + inctools = derive2 { name="inctools"; version="1.0.7"; sha256="0hw42i0zj8f156wkdc7v7njg6sgxkhhn84v2pg1qxwvlyy3daz0y"; depends=[cubature doParallel foreach ggplot2 glm2 MASS plyr pracma]; }; + indelmiss = derive2 { name="indelmiss"; version="1.0.7"; sha256="1pm1yl7kbxrik5ghvsvp6irmzgawxb8v03kvrqm48mnbghkdh1lv"; depends=[ape numDeriv phangorn Rcpp]; }; + indicspecies = derive2 { name="indicspecies"; version="1.7.6"; sha256="0a7s37k3bg4cnzkvn833nrwi6hnfa5f6jxa8ra954v4sp55g6i5d"; depends=[permute]; }; inegiR = derive2 { name="inegiR"; version="1.2.0"; sha256="14mpjyc85l9sznhn29cxk37l3y5yxclqiv2kgcwf8prpxfgwy83l"; depends=[jsonlite plyr XML zoo]; }; ineq = derive2 { name="ineq"; version="0.2-13"; sha256="09fsxyrh0j7mwmb5hkhmrzgcy7kf85jxkh7zlwpgqgcsyl1n91z0"; depends=[]; }; inference = derive2 { name="inference"; version="0.1.0"; sha256="0j92isfkbhk13yx2hd3a5dd7ikcbgjc04zisd1n5kmg6ajw2aj6r"; depends=[sandwich]; }; inferference = derive2 { name="inferference"; version="0.4.62"; sha256="12iag6l2digxb056qc765xi27ayc4qyqdqzbhxscr8a5lxfkdn4p"; depends=[Formula lme4 numDeriv]; }; - inflection = derive2 { name="inflection"; version="1.1"; sha256="1nb1pf07c371vwgplfyjs3q1iqgb5hyk9czxqrjiy18g8p7zdln2"; depends=[]; }; - influence_ME = derive2 { name="influence.ME"; version="0.9-6"; sha256="1pfp26dmqs6abb2djf9yn5jk4249vi8ldahpc2xrr0mr3l17g06g"; depends=[lattice lme4 Matrix]; }; - influence_SEM = derive2 { name="influence.SEM"; version="1.5"; sha256="0h920pxa3sk6y7ipkihxm78i06alm5rmlmn5pr937j7abgypkk3p"; depends=[lavaan]; }; + inferr = derive2 { name="inferr"; version="0.1.0"; sha256="13wgjh5b03kyx6jvdgpavr9qjzvr7plgml2ickq2gxkxczc05r2m"; depends=[dplyr magrittr purrr Rcpp tibble tidyr]; }; + inflection = derive2 { name="inflection"; version="1.2"; sha256="13mlyfcw13z9y48ypycypp6m7s2d7yx3n13vr2br4kwwn74hqky8"; depends=[]; }; + influence_ME = derive2 { name="influence.ME"; version="0.9-8"; sha256="0fnc0hk50sh4fd5jfgs1kd61psk7mrc85s1ihmficayivvl7iklb"; depends=[lattice lme4 Matrix]; }; + influence_SEM = derive2 { name="influence.SEM"; version="2.0"; sha256="113h4nrcik21vhfld143ivcij49vimzilq7nxn2d0821iz1dmnfg"; depends=[lavaan]; }; influenceR = derive2 { name="influenceR"; version="0.1.0"; sha256="12p9362hkndlnz1rd8j2rykg57kbm6l7ks60by3rd25xg50k5jag"; depends=[igraph Matrix]; }; infoDecompuTE = derive2 { name="infoDecompuTE"; version="0.5.1"; sha256="1aigd1fvpdqjplq1s1js0sy8px68q73lbp5q591rn52c77smdhaj"; depends=[MASS]; }; informR = derive2 { name="informR"; version="1.0-5"; sha256="16pz47wlr1gr8z5hdnrjpczm967khqiqgdfiw15a0bby6qdvni2y"; depends=[abind relevent]; }; infotheo = derive2 { name="infotheo"; version="1.2.0"; sha256="18xacczfq3z3xpy434js4nf3l19lczngzd0lq26wh22pvg1yniwv"; depends=[]; }; infra = derive2 { name="infra"; version="0.1.2"; sha256="0jycnnmrrjq37lv67xbvh6p63d6l4vbgf3i1z9y7r75d6asspzn1"; depends=[]; }; - infuser = derive2 { name="infuser"; version="0.2.2"; sha256="0hpy8s0090d7khkqlb733fa55n2g41fcx19dsjpazlk1j7bqrvxk"; depends=[]; }; + infraFDTD_assist = derive2 { name="infraFDTD.assist"; version="0.5"; sha256="1bgjfhwkbd0y1iwxq3qh80kshsd9g1r1gg99lr75n2i61qnnimnf"; depends=[fields]; }; + infuser = derive2 { name="infuser"; version="0.2.5"; sha256="0zq05i55gkwrvjs3mzh64ffwmxln3lrjqw3w87xy3ihsqjhxb2pg"; depends=[]; }; infutil = derive2 { name="infutil"; version="1.0"; sha256="02d0hfbkdqjj0lm1fzwwxy60831kbcjn2m4rfblpib0krkbpz72n"; depends=[ltm]; }; + ini = derive2 { name="ini"; version="0.2"; sha256="0dzy2zzzczs7xnnm7v6achd6qsy2wbrvsgahkgbsrpvwxpcb79bp"; depends=[]; }; injectoR = derive2 { name="injectoR"; version="0.2.4"; sha256="0sa32cspp6y3m04yfmd02kxx55mk7l9jxf4r9pk1a6k3sqnj6fl8"; depends=[]; }; inline = derive2 { name="inline"; version="0.3.14"; sha256="0cf9vya9h4znwgp6s1nayqqmh6mwyw7jl0isk1nx4j2ijszxcd7x"; depends=[]; }; inlinedocs = derive2 { name="inlinedocs"; version="2013.9.3"; sha256="13vk6v9723wlfv1z5fxmvxfqhaj68h0x3s2qq9j6ickr4wakb4ar"; depends=[]; }; - inpdfr = derive2 { name="inpdfr"; version="0.1.2"; sha256="0bsfyfpxps59nfyx21lh9n15gc1szikjmlqq5mvwnvwd61fly058"; depends=[ca cluster entropart metacom R_devices RColorBrewer RGtk2 SnowballC stringi tm wordcloud]; }; + inlmisc = derive2 { name="inlmisc"; version="0.2.4"; sha256="1j2wxzm45zzykm29swvqj6hdscgxq6094s4wwj6rr7nwpp9v3qni"; depends=[dplyr igraph knitr raster rgdal rgeos sp]; }; + inpdfr = derive2 { name="inpdfr"; version="0.1.3"; sha256="1qdnh4bcwhg587y4s1r27vqmx3i4fsg8gvnrl4gx1nk7r2fhsqxc"; depends=[ca cluster entropart metacom R_devices RColorBrewer RGtk2 SnowballC stringi tm wordcloud]; }; insideRODE = derive2 { name="insideRODE"; version="2.0"; sha256="1ffndk8761cpkririb3g1qsq9nwmh82lcrpql9i5fksdprvdjzcw"; depends=[deSolve lattice nlme]; }; insol = derive2 { name="insol"; version="1.1.1"; sha256="0zbawkp4qb0kqb7y9ibiyy8sa9rfgbzwmcdswx6s87p0h7brrqn6"; depends=[]; }; - instaR = derive2 { name="instaR"; version="0.2.2"; sha256="13p6j24c8yw3rqjac2q1s6s765bg8022wkhlbqh543lf7zx92rm0"; depends=[httr rjson]; }; - install_load = derive2 { name="install.load"; version="1.0.4"; sha256="18il5134halv8j5p6hks04i97aam3gcwgbss5yj1hmpf71dhqr4p"; depends=[]; }; + inspectr = derive2 { name="inspectr"; version="1.0.0"; sha256="04rpr5ajpdx1d49y327dryxwxk27yljj4c96i9qglf02i9kmplkg"; depends=[openxlsx]; }; + instaR = derive2 { name="instaR"; version="0.2.4"; sha256="0c4m471ragkpksr0h21cdgnjxcknf01xqz543dahxgzjg9ncjwhg"; depends=[httr jsonlite]; }; + install_load = derive2 { name="install.load"; version="1.2.1"; sha256="148q0rjal5hfcb8ilxzd1bz38mn8vxqrsfg5x4jy48psk00fk3d9"; depends=[]; }; insuranceData = derive2 { name="insuranceData"; version="1.0"; sha256="0wryh8i1v3bnpbqn6d6dpxr9bwwl6mnh5cb5igz0yanh4m1rx96w"; depends=[]; }; intReg = derive2 { name="intReg"; version="0.2-8"; sha256="0cqf6lbn8aiyj5j7gg1qz80i477bfxbmxp7fjs25ish4bcdsbjja"; depends=[maxLik miscTools sets]; }; intRegGOF = derive2 { name="intRegGOF"; version="0.85-1"; sha256="0fyvhl6jmi6krfbimsq61dhixlz9h9jxk4yjvwbx2vl8d9fnnr54"; depends=[]; }; - intamap = derive2 { name="intamap"; version="1.3-37"; sha256="17l1bifks0vsk0a3bj2g4w8qrvhmdh0p145kmd09223x9yc4mc9v"; depends=[automap evd gstat MASS mvtnorm sp]; }; + intamap = derive2 { name="intamap"; version="1.4-1"; sha256="1shyxlps1rxqavrvg55gw0c9115q0j3yw78ilavig7036zx5lazv"; depends=[automap doParallel evd foreach gstat MASS mvtnorm rgdal sp]; }; intamapInteractive = derive2 { name="intamapInteractive"; version="1.1-10"; sha256="073k6sdds40fmlbw1xnp3x5sc9qdyq2s1bhp7av4jjm930hsvsrn"; depends=[automap gstat intamap spatstat spcosa]; }; - intcox = derive2 { name="intcox"; version="0.9.3"; sha256="1m1lzmymh2pk570k6nxq3nj7wxkvs1s3nvz8cb456fnv72ng8fap"; depends=[survival]; }; interAdapt = derive2 { name="interAdapt"; version="0.1"; sha256="06ki36l1mrnd9lbm696a6gapr488dz8na4wvl9y1fif9hfv4zk25"; depends=[knitcitations knitr mvtnorm RCurl shiny]; }; interactionTest = derive2 { name="interactionTest"; version="1.0"; sha256="1ppc476glwf0bsr1wgzircvnhgn9kkbhy3rskfz671ma6fv3p67b"; depends=[]; }; intercure = derive2 { name="intercure"; version="0.1.0"; sha256="0j71dqcbcfl1zpfidh3xys5h3ggyhrzq3avkdm9v18pv464x8xlv"; depends=[foreach iterators MASS Matrix survival]; }; interferenceCI = derive2 { name="interferenceCI"; version="1.1"; sha256="19ky10nn6ygma6yy5h1krxx61aikh3yx5y39p68a944mz8f72vsn"; depends=[gtools]; }; intergraph = derive2 { name="intergraph"; version="2.0-2"; sha256="1ipxdrfxhcxhcbqvrzqh3impwk4xryqlqlgjl7f2mwrf365zs6ph"; depends=[igraph network]; }; - internetarchive = derive2 { name="internetarchive"; version="0.1.5"; sha256="0zaf7nzdjr0wlvzrb6wr2nr42nq7l113i2zv9d7220wp75a5cwvd"; depends=[dplyr httr]; }; - interplot = derive2 { name="interplot"; version="0.1.2.0"; sha256="1m9zh028j9nr5by26qw5bihwxj7ys39xqk82fwwkd37yqfxybsnc"; depends=[abind arm ggplot2]; }; + internetarchive = derive2 { name="internetarchive"; version="0.1.6"; sha256="1cx9dxlrdz1xak4jrrjs2wsq6ml8n2xl0n0s6n9h3g247j4lfvnm"; depends=[dplyr httr]; }; + interplot = derive2 { name="interplot"; version="0.1.5"; sha256="0svhs7mj987vravirhmp4788qvqm32v614qj7q06b2y4va477yj8"; depends=[abind arm dplyr ggplot2]; }; interpretR = derive2 { name="interpretR"; version="0.2.4"; sha256="0nfh3pyr7nn0r41xk0mfb4fs5rjkbh43lbw14x7pdmbgzpgsc22c"; depends=[AUC randomForest]; }; interval = derive2 { name="interval"; version="1.1-0.1"; sha256="1lln9jkli28i4wivwzqrsxvv2n15560f7msjy5gssrm45vxrxms8"; depends=[Icens MLEcens perm survival]; }; intervals = derive2 { name="intervals"; version="0.15.1"; sha256="1r2akz8dpix1rgvdply4r3m2zc08r0n96w9c97hma80g61a3i2ws"; depends=[]; }; interventionalDBN = derive2 { name="interventionalDBN"; version="1.2.2"; sha256="0wpp4bfi22ncvl0vdivniwwvcqgnpifpgxb4g5jbyvr0z735cd9w"; depends=[]; }; intpoint = derive2 { name="intpoint"; version="1.0"; sha256="0zcv64a0clgf1k3ylh97q1w5ddrv227846gy9a68h6sgwc0ps88b"; depends=[]; }; introgress = derive2 { name="introgress"; version="1.2.3"; sha256="1j527gf7pmfy5365p2j2jbxq0fb0xh2992hj4d7dxapn4psgmvsk"; depends=[genetics nnet RColorBrewer]; }; - intsvy = derive2 { name="intsvy"; version="1.8"; sha256="0w8xyrmj35664pl9f9nmc2mqcds9l8g4y7nbjkmbqpx3nlfx5vxm"; depends=[foreign ggplot2 Hmisc memisc plyr reshape]; }; + intrval = derive2 { name="intrval"; version="0.1-1"; sha256="1p66cjpn43xib7rrnyv3jqr6bb49d3dxf888p8hxnr7kx9wfalkn"; depends=[]; }; + intsvy = derive2 { name="intsvy"; version="1.9"; sha256="080vklwfrnm5gfcympwi1llipkk5a3qh2xw6m91k9p6xyvnl3rrz"; depends=[foreign ggplot2 Hmisc memisc plyr reshape]; }; + intubate = derive2 { name="intubate"; version="1.0.0"; sha256="03ikqwai7wdahdfyzdy42xs8qpdhl9gmbak2qd82yxjl62956i8c"; depends=[]; }; + inum = derive2 { name="inum"; version="0.9-1"; sha256="11aks7y41298rqdbawg016akam99qxf2f6rwwkkvzp62syp2ip6g"; depends=[]; }; invGauss = derive2 { name="invGauss"; version="1.1"; sha256="0l93pk2sh74dd6a6f3970nval5p29sz47ynzqnphx0wl3yfmmg9c"; depends=[optimx survival]; }; invLT = derive2 { name="invLT"; version="0.2.1"; sha256="0dcr2cclgzkvsw1lysmjrkwgahas96rjc328yc7a1a56pf62kw2v"; depends=[]; }; - investr = derive2 { name="investr"; version="1.3.0"; sha256="057wq6c5r7hrg1nz7460alsjsk83cvac2d1d4mjjx160q3m0zcvj"; depends=[nlme]; }; - io = derive2 { name="io"; version="0.2.2"; sha256="07vifr1h8ldiam8ngp6yrx6mvdnmmnnsq3hcs2pyphws6hgdmwwh"; depends=[filenamer stringr]; }; + investr = derive2 { name="investr"; version="1.4.0"; sha256="0l47bfwxssfr3maprkpwnmgxnxccl3ch4grc7f968iiqk83mcxw9"; depends=[nlme]; }; + invgamma = derive2 { name="invgamma"; version="1.0"; sha256="1himzbglmf0w5a4bz62qq26z7kd07ljz98ybgcqxsmdagdd9jl55"; depends=[]; }; + io = derive2 { name="io"; version="0.2.4"; sha256="1y2va6hcsdzsak6ljgj4sxin5zfr4azrqc8b9qlxcaajyyji2crx"; depends=[filenamer stringr]; }; ioncopy = derive2 { name="ioncopy"; version="1.0"; sha256="1idk899zxvpvnswdwlpkhy5v8id6xmrbp6hg4rmrlpp3wfxw3ad5"; depends=[multtest]; }; ionflows = derive2 { name="ionflows"; version="1.1"; sha256="1k9yz82hbjwljyg4cmi675ppykrc2yq9md8x1hhkfxmp070whcxl"; depends=[Biostrings]; }; + ionicons = derive2 { name="ionicons"; version="0.1.1"; sha256="0v7icjx2bpb0hd3j8a14lijklyjkmw7qgp336z66wzscm6f411ip"; depends=[png rsvg xml2]; }; ionr = derive2 { name="ionr"; version="0.3.0"; sha256="18rv5n5gihb6pz36s45yj17sdjsbj4485k4lnggdjj1gbbjkz2ni"; depends=[gplots psych]; }; - iosmooth = derive2 { name="iosmooth"; version="0.91"; sha256="03kyzhcl5lipaiajs53dc8jaazxv877nl0njbq88cp4af3gd6s82"; depends=[]; }; + iopsych = derive2 { name="iopsych"; version="0.90.1"; sha256="0adxwxnb1zdlld3icdggx7cq6cp8z4h1jf105485w322a8c6s9ik"; depends=[mco mvtnorm]; }; + iosmooth = derive2 { name="iosmooth"; version="0.94"; sha256="06xgzhjgb6pznjzfli193q7kn8sh5jmqsssgymwj98bw7iwn4q3z"; depends=[]; }; iotools = derive2 { name="iotools"; version="0.1-12"; sha256="1b2crnhx84h1gp10sy2mkhi9vylp9z97ld16jijddzlf4v23bmlx"; depends=[]; }; ipdmeta = derive2 { name="ipdmeta"; version="2.4"; sha256="0k9wqpmrvqdh73brmdzv86a2dbyddjyyyqzqgp1vqb3k48k009s2"; depends=[nlme]; }; - ipdw = derive2 { name="ipdw"; version="0.2-4"; sha256="0dlj8bfgqjf6yam11c74yhz1yj553a15sf1wgqdvf9912jpi3j54"; depends=[gdistance raster sp]; }; + ipdw = derive2 { name="ipdw"; version="0.2-5"; sha256="1a0xlhzmnc3l3fvn1v3rgxwg0va0418yq62i2dlq0l5djcfbxyc3"; depends=[gdistance raster sp]; }; ipflasso = derive2 { name="ipflasso"; version="0.1"; sha256="12cyn7wpkrjqrjccb26mi375ijqplps4216ldj7w3az9g8pzihv3"; depends=[glmnet survival]; }; ipfp = derive2 { name="ipfp"; version="1.0.1"; sha256="12aklhf9p70r9b2wi0qgbl835b4lil805c31n1ka4kdix4b4cpr4"; depends=[]; }; + ipft = derive2 { name="ipft"; version="0.2.2"; sha256="1wncz4plz8gziv33yvwkdiw7shpbhs357ag0i9350yn5h9zhhp9b"; depends=[apcluster cluster dplyr ggplot2 Rcpp]; }; iplots = derive2 { name="iplots"; version="1.1-7"; sha256="052n8jdhj8gy72xlr23dwd5gqycqnph7s1djg1cdx2f05iy693y6"; depends=[png rJava]; }; ipred = derive2 { name="ipred"; version="0.9-5"; sha256="193bdx5y4xlb5as5h59lkakrsp9m0xs5faqgrp3c85wfh0bn8iis"; depends=[class MASS nnet prodlim rpart survival]; }; + iprior = derive2 { name="iprior"; version="0.6.4"; sha256="1cpp0cp6cfdrh23wjjqvng9dszjmp5a90bgd6sbgcfckn2si0ly1"; depends=[RColorBrewer Rcpp RcppEigen]; }; ips = derive2 { name="ips"; version="0.0-7"; sha256="0r4394xbchv6czad9jz4ijnfz8ss3wfdvh7ixrdxic2xrw0ic90v"; depends=[ape colorspace XML]; }; - iptools = derive2 { name="iptools"; version="0.3.0"; sha256="03i3n3v75vdlfk1z4pq6256pmb907mm60hl2gzhf7dyjvfzrm9p0"; depends=[AsioHeaders BH Rcpp]; }; + iptools = derive2 { name="iptools"; version="0.4.0"; sha256="0c3j5sl129xl75p14qr880ll1y3yss3zqg39zbj2jp6wcv9rvafx"; depends=[AsioHeaders BH ISOcodes Rcpp]; }; ipw = derive2 { name="ipw"; version="1.0-11"; sha256="11a34j6lp329ran2r9kxn8184kfmibkdig74lsy6lj4w4w0d71cm"; depends=[geepack MASS nnet survival]; }; iqLearn = derive2 { name="iqLearn"; version="1.4"; sha256="0vgnfr6x6f6qlnag63brnkdymlmm2vbkl8fg02w98qsc48lal454"; depends=[]; }; - irace = derive2 { name="irace"; version="1.07"; sha256="187lwi19qcq2kqxca0233qs6k36n9fsnnh9xqwjga15snn4vlrlq"; depends=[]; }; - irlba = derive2 { name="irlba"; version="2.0.0"; sha256="1gms3rxrm24ri4vjvnpl4v47m7bx0zk63z8y85rbhsvx230xdy0m"; depends=[Matrix]; }; + iqspr = derive2 { name="iqspr"; version="1.0"; sha256="18kld8w1qwgyvs61irk80n56lj6mcy0mlrnvsq3940hhbcpmx61k"; depends=[rcdk]; }; + irace = derive2 { name="irace"; version="2.1"; sha256="0q3k8jd2s7m20vdx8bfjh3kwgqjyymkfwdfgmbflmlj8q1km8iqc"; depends=[]; }; + irlba = derive2 { name="irlba"; version="2.1.2"; sha256="1qbcn0ix85pmk296jhpi419kvh06vxm5cq24yk013ps3g7fyi0si"; depends=[Matrix]; }; irr = derive2 { name="irr"; version="0.84"; sha256="0njxackqj8hyf9j1yszwxbnaxgp27fc2bwyyf7dip72wc12f81n5"; depends=[lpSolve]; }; + irtDemo = derive2 { name="irtDemo"; version="0.1.2"; sha256="1kbab06lwldyp5ra71rgn4habq6yl6ggl5km1sj9bbqa6n4gqvwz"; depends=[fGarch shiny shinydashboard]; }; irtProb = derive2 { name="irtProb"; version="1.2"; sha256="12wnvbzkh0mx9i3iyh1v2n2f2wjsjj7ad3dgv9xj949x4nbz16j0"; depends=[lattice moments]; }; - irtoys = derive2 { name="irtoys"; version="0.1.7"; sha256="11nz675haigs6vg08qjibs8yccy2pbz0b9r8761fs8gw3n7bpfz4"; depends=[ltm sm]; }; + irtoys = derive2 { name="irtoys"; version="0.2.0"; sha256="1rjw7f8r7kg4yrlkv6cwiiggm6hgx3gqc4jzcmvvmv0ycyi2w3pw"; depends=[ltm sm]; }; irtrees = derive2 { name="irtrees"; version="0.1.0"; sha256="03jmfyx1ia987zhi74fmmcdz70wnm8c7z5z30rwzd1cs11dijjwv"; depends=[]; }; isa2 = derive2 { name="isa2"; version="0.3.4"; sha256="12qbfvcj8whhy7d68l7ra5wnkpx87ldl6mir7r5n8afb3fkww0kp"; depends=[lattice]; }; isdals = derive2 { name="isdals"; version="2.0-4"; sha256="15p432fskdz2r8523cw122mfhvrq8vdsdsrd0kz9yfin4b5z3zfh"; depends=[]; }; - isingLenzMC = derive2 { name="isingLenzMC"; version="0.2.3"; sha256="1rkry39yhxvq3ypnnxgdv15kd5w0l5w56ywmkcsgkwlxdfrvlyn2"; depends=[]; }; - ismev = derive2 { name="ismev"; version="1.40"; sha256="1isxgq62q6dk50c3w1l0j4nfgwsj6c2wnx2sm3ncxzlqml0ih6jn"; depends=[mgcv]; }; - isocir = derive2 { name="isocir"; version="1.1-3"; sha256="1bx68n9wyfs2dcgph66rsy0jw8hjkl5kw212l0563kz3m1nik9sr"; depends=[circular combinat]; }; + isdparser = derive2 { name="isdparser"; version="0.2.0"; sha256="061wi94rj3iyvf3dgvcjy0x46hvwhr4ifx0jhirz44bj0c8g3h7j"; depends=[data_table tibble]; }; + isingLenzMC = derive2 { name="isingLenzMC"; version="0.2.5"; sha256="1pd1s3a1rv7vlxd5db1pgwdjps8w5im4zz2h3qzal9cwbis0hb51"; depends=[]; }; + island = derive2 { name="island"; version="0.1.2"; sha256="0b7i1j7prb5v5392cl1n0w9migx4dl6f1ys4d2g82hd9l0y1m6nm"; depends=[]; }; + ismev = derive2 { name="ismev"; version="1.41"; sha256="19vmjgz1baqkryi34ffhjznc46z3zwqaqblwafhk9fd50xgn4bi6"; depends=[mgcv]; }; + isocir = derive2 { name="isocir"; version="2.0-6"; sha256="0dkxdx2g1c579q97r45shws2gylkwqlvrhmc14ddmzi45xhxlql6"; depends=[circular combinat TSP]; }; isopam = derive2 { name="isopam"; version="0.9-13"; sha256="0y1yy0922kq5jxyc40gz8sk9vlzwfkfg5swmc6lk4007g9mgc8fm"; depends=[cluster vegan]; }; isopat = derive2 { name="isopat"; version="1.0"; sha256="0fznvgycyd35dh7pbq1xhp667gsficlmycn5pcrqcbs89069xr1s"; depends=[]; }; isoph = derive2 { name="isoph"; version="0.5"; sha256="1a3brp8w3xs3l25x1nn5213jj5mrzzfl4fm34l7ry97g4s9d8sh3"; depends=[Iso Rcpp survival]; }; isotone = derive2 { name="isotone"; version="1.1-0"; sha256="0alk0cma5h3yn4w2nqcahprijsm89b0gby9najbngzi5vnxr6nvn"; depends=[nnls]; }; isotonic_pen = derive2 { name="isotonic.pen"; version="1.0"; sha256="1lgw15df08f4dhrjjfr0jqkcvxwad92kflj2px526pcxwkj7cj3i"; depends=[coneproj Matrix]; }; - isva = derive2 { name="isva"; version="1.8"; sha256="09mrvvk09j460dzi45z8hwdpmibfshsii5dcp38g13czr40d48na"; depends=[fastICA qvalue]; }; - itcSegment = derive2 { name="itcSegment"; version="0.1"; sha256="1x6hxr55d7ny9mmm4zhadnx5rvli8nwbh9cjqlzl1lpa7w5sfiri"; depends=[maptools raster rgeos sp]; }; + isva = derive2 { name="isva"; version="1.9"; sha256="05qx9q0kg4ma23v4abhihw0vz017nq6hv2jzsiqx4d20ngh1dl4z"; depends=[fastICA JADE qvalue]; }; + itcSegment = derive2 { name="itcSegment"; version="0.2"; sha256="121k0j5w47c10ws0dwcl1qd3ryichx5m86mzf2w3249p6wj54y7j"; depends=[maptools raster rgeos sp]; }; iteRates = derive2 { name="iteRates"; version="3.1"; sha256="1dycmlm3vldc60wz2jjdfbla14383911zfahgal5mx8whxwq95c5"; depends=[ape apTreeshape geiger gtools MASS partitions VGAM]; }; iterLap = derive2 { name="iterLap"; version="1.1-2"; sha256="0ixh9aw115496ib0iswfsj97rjcd2f02z116dg57vl9hhzh28f13"; depends=[quadprog randtoolbox]; }; iterators = derive2 { name="iterators"; version="1.0.8"; sha256="1f057pabs7ss9h1n244can26qsi5n2k3salrdk0b0vkphlrs4kmf"; depends=[]; }; - iterpc = derive2 { name="iterpc"; version="0.2.8"; sha256="096x2q8bx95ilyq5zpkqgzpfyrbj0j4fwvdivc4zf3ybd2fm4fjp"; depends=[iterators polynom Rcpp]; }; + iterpc = derive2 { name="iterpc"; version="0.3.0"; sha256="1l1qsjmqwabbmrvl4rx50fynn1p62f0g48hkx71p3gv9asr4zifz"; depends=[gmp iterators Rcpp]; }; itertools = derive2 { name="itertools"; version="0.1-3"; sha256="1ls5biiva10pb1dj3ph4griykb9vam02hkrdmlr5a5wf660hg6xn"; depends=[iterators]; }; itertools2 = derive2 { name="itertools2"; version="0.1.1"; sha256="0yra3x9ddvn5pp3jibm69205zazv81bz0cflw4mdvxpqadaf9f96"; depends=[iterators]; }; itree = derive2 { name="itree"; version="0.1"; sha256="164zgr142hcp9plnbccs6m823p4m0prk73bvp54bc7bqnqmc3d9a"; depends=[]; }; - its = derive2 { name="its"; version="1.1.8"; sha256="1g9qmdrw7qiw0xiryf7bf5m9prrba7r11jyzprzdglc1akizav8a"; depends=[Hmisc]; }; - itsadug = derive2 { name="itsadug"; version="2.0"; sha256="0s77f060xb2lkddd116snpvsbs73wz8kwv4hkd6yv0m2fpamvpvx"; depends=[mgcv]; }; + itsadug = derive2 { name="itsadug"; version="2.2"; sha256="01a80a6vni3g4xph3p8i0jrlqgqhdyswhv7w6vbxhbmawbzffxyx"; depends=[mgcv plotfunctions]; }; itsmr = derive2 { name="itsmr"; version="1.5"; sha256="0l9m5is6d6pkpfkihx0jir5iv8zmqqav8vh9bkkpqv5iz61p4kxb"; depends=[]; }; ivbma = derive2 { name="ivbma"; version="1.05"; sha256="0d7kg6pkdx1aj1i6kqs2r7j1klxxwymml63qnrq6a6fia3ck9kk9"; depends=[]; }; ivfixed = derive2 { name="ivfixed"; version="1.0"; sha256="0a26zrkvz0ffq4zxdx5vhr1nvsi9c15s6gvc1zy2pddjz31x2xi5"; depends=[Formula]; }; ivlewbel = derive2 { name="ivlewbel"; version="1.1"; sha256="0ykcfikm2i28s3fm6zzx8cjvpwhksg8an0rfr0b35gf7p69brgag"; depends=[gmm lmtest plyr]; }; - ivmodel = derive2 { name="ivmodel"; version="1.1"; sha256="18hq667ls552vq59dhirx5q9ky252p3cjvkhm3d017bdpi3m1hq5"; depends=[Matrix]; }; + ivmodel = derive2 { name="ivmodel"; version="1.2"; sha256="0jpvkk33ihxsla2j4b4spp2dv7b7rq49x46m9lc9zp6020w91b3a"; depends=[Formula Matrix]; }; ivpack = derive2 { name="ivpack"; version="1.2"; sha256="0cr5acjrn41d3q0b77hlg2jmsbf1msvys9gcavm1blsryg2bc03c"; depends=[AER lmtest sandwich]; }; ivpanel = derive2 { name="ivpanel"; version="1.0"; sha256="0irjmkw3nnd8ssidvj23lr0hihlhd9acsbaznh88lknx53ijc2qv"; depends=[Formula]; }; ivprobit = derive2 { name="ivprobit"; version="1.0"; sha256="1kijq7k6iv2ybaxb08kqzm2s2k6wp2z50r01kxcq023pmyfjczwy"; depends=[]; }; jSonarR = derive2 { name="jSonarR"; version="1.1.1"; sha256="054q3ly471xa64yyz2as6vkr440ip1y8n5wl6s3zbhqy3bqkdqif"; depends=[jsonlite RCurl]; }; - jaatha = derive2 { name="jaatha"; version="3.1.1"; sha256="017iysn4g196q36b9d7dw19hahvh2ngv872nmx36a84rxs3ymnav"; depends=[assertthat R6]; }; + jaatha = derive2 { name="jaatha"; version="3.2.0"; sha256="00886j0cabrq6a69w8s1gsfkmx1wqs1vpxjafpm71msk54r0dj55"; depends=[assertthat R6]; }; jackknifeKME = derive2 { name="jackknifeKME"; version="1.2"; sha256="0c5shl6s46kz7a623gccqk2plrrf2g29nwr6vbny6009pq3jvzam"; depends=[imputeYn]; }; jackstraw = derive2 { name="jackstraw"; version="1.1"; sha256="0p79b8vgjspi3hjqqrhrfvf0k9rzg7ycn7azax3pk28j2cvi30j2"; depends=[corpcor lfa]; }; - jagsUI = derive2 { name="jagsUI"; version="1.4.2"; sha256="0c8sg3zc40imircnkk5f8wbvqb2jz5li87m3wxcdr8djcs7yasx8"; depends=[coda lattice rjags]; }; + jacpop = derive2 { name="jacpop"; version="0.5"; sha256="056c82d4a10rgq0p4p63y9i94dy1kqp3yh7xms9nx9q2xb940xb5"; depends=[]; }; + jagsUI = derive2 { name="jagsUI"; version="1.4.4"; sha256="0jfziaxxrlf1izp7s61d7xckdx33hnbq1cs2zlp7c9bcpp4mdkzv"; depends=[coda lattice rjags]; }; james_analysis = derive2 { name="james.analysis"; version="1.0.1"; sha256="1b2n4ds4ivfk564z87s2rxjl9j0y4drd3cmyv8jqpccmdvx1137d"; depends=[naturalsort rjson]; }; - jetset = derive2 { name="jetset"; version="3.1.3"; sha256="1m19p99ghh3rb0kgbwnyg0aaq011xcsrcf0llnbs9j5l2ziwvg4x"; depends=[AnnotationDbi org_Hs_eg_db]; }; - jiebaR = derive2 { name="jiebaR"; version="0.8"; sha256="1qf27lrz02w94vxqjqbp94xxi38jzhjblcg4c1n82ngpzmfb44qc"; depends=[jiebaRD Rcpp]; }; + janeaustenr = derive2 { name="janeaustenr"; version="0.1.4"; sha256="1yxk94acscq43gs3m0n0x3805dr71kn4wf3ws7rg62p2bd22b09i"; depends=[]; }; + janitor = derive2 { name="janitor"; version="0.2.1"; sha256="14jb3viyrmxc0grrkkw86z6s7c3sq0a07mhpyzw1xsy5gfda29yi"; depends=[dplyr tidyr]; }; + jetset = derive2 { name="jetset"; version="3.3.0"; sha256="1lyjrakk8f25541v7q3zwam7xbxykh75r0czk6qvil92a9y1005r"; depends=[AnnotationDbi org_Hs_eg_db]; }; + jiebaR = derive2 { name="jiebaR"; version="0.9.1"; sha256="1qv4k5fgi40ppivdk3mxkhawyf2443h2lz5b9gvai9sqj6vf0s8k"; depends=[jiebaRD Rcpp]; }; jiebaRD = derive2 { name="jiebaRD"; version="0.1"; sha256="1wadpcdca4pm56r8q22y4axmqdbb2dazsh2vlhjy73rpymqfcph4"; depends=[]; }; - jmcm = derive2 { name="jmcm"; version="0.1.1.0"; sha256="1mijj7c5n48jkka162rd2297gq8lijhrwg6r5wd1b7dq5r1ahgby"; depends=[Formula Rcpp RcppArmadillo]; }; + jmcm = derive2 { name="jmcm"; version="0.1.7.0"; sha256="0qq7dc6i5w5r276r7l9j29f783s41y3gp70hj5cz72wkmhdnvg4j"; depends=[Formula Rcpp RcppArmadillo]; }; jmetrik = derive2 { name="jmetrik"; version="1.0"; sha256="0xnbvby03fqbxgg0i0qxrrzjv98783n6d7c1fywj81x487qlj77j"; depends=[]; }; - jmotif = derive2 { name="jmotif"; version="1.0.2"; sha256="0m3zz0xr2f6y8igwcg8a3rbyl3a6m8viyp0pcjbdwyj2400dbf3m"; depends=[Rcpp RcppArmadillo]; }; - jmuOutlier = derive2 { name="jmuOutlier"; version="1.1"; sha256="17mg2aa2mn25448yky647xrvm3dmsjhl751j8ywcd8af2wf8vyrn"; depends=[]; }; - joineR = derive2 { name="joineR"; version="1.0-3"; sha256="0q98nswbxk5dz8sazzd66jhlg7hv5x7wyzcvjc6zkr6ffvrl8xj7"; depends=[boot gdata lattice MASS nlme statmod survival]; }; - joint_Cox = derive2 { name="joint.Cox"; version="2.4"; sha256="18r1h9spcjg6yc37nqralf6ac04hgvfhqfviv8ldc7fl5nw8ws5q"; depends=[]; }; + jmotif = derive2 { name="jmotif"; version="1.0.2.900"; sha256="0zgj1g8vy2cj2kyschbr1xb1mb862gniva0sa8qr9p8vvb03ja4v"; depends=[Rcpp RcppArmadillo]; }; + jmuOutlier = derive2 { name="jmuOutlier"; version="1.3"; sha256="1lzqpdy2987szihsjaq6l1iggjhji0li4cj7914myj3vzfcif8gw"; depends=[]; }; + jmv = derive2 { name="jmv"; version="0.7.0.3"; sha256="0knrpnr2mpq2h1s6xis6wsf3k6yc142mfmrmp8s53s29zlzs6ljr"; depends=[afex BayesFactor car GGally ggplot2 GPArotation jmvcore lsmeans lsr multcomp PMCMR psych R6 vcd vcdExtra]; }; + jmvcore = derive2 { name="jmvcore"; version="0.4.0"; sha256="0kga95ryxvvgdlc1z9s53bmasfizyl6gvxjwp55nf2k0pm0lx6sf"; depends=[base64enc R6 rjson]; }; + jocre = derive2 { name="jocre"; version="0.3.1"; sha256="01mnd2dzm3bnbdxg0grj10ashpxzgsk68lfx7ssxk7pnfxnbc39h"; depends=[boot KernSmooth plyr]; }; + joinXL = derive2 { name="joinXL"; version="1.0.1"; sha256="1l76bckjz5r1kdsh0s10i0gpca12rkfkp14346fn7avdcw73v23i"; depends=[data_table openxlsx R_utils rChoiceDialogs Rcpp readxl rJava timeDate timeSeries]; }; + joineR = derive2 { name="joineR"; version="1.1.0"; sha256="13b3syh20d0wrfh8gama16ajc73nzd5rq4pgyrdw8m94ybmg559v"; depends=[lattice MASS nlme statmod survival]; }; + joineRML = derive2 { name="joineRML"; version="0.1.1"; sha256="0m8cyjrhbk0bspigpjh30g74084hdn0q4zg9364vp2dmna092m47"; depends=[lme4 MASS Matrix nlme Rcpp RcppArmadillo survival]; }; + joint_Cox = derive2 { name="joint.Cox"; version="2.10"; sha256="1vfndask1njl01h4vqbsbhvd5vpy432wapp6vz2byddb358hg4rh"; depends=[survival]; }; jointDiag = derive2 { name="jointDiag"; version="0.2"; sha256="0y1gzrc79vahfhn4jrj5xys8pmkzxj4by7361730gi347f0frs0a"; depends=[]; }; + jointNmix = derive2 { name="jointNmix"; version="1.0"; sha256="0ibh7hqkpzlfk3bk4d2dd64jhr8cvw563k082vwnljiam7k5nj4b"; depends=[]; }; jointPm = derive2 { name="jointPm"; version="2.3.1"; sha256="1c2cn9sqwfyv9ksd63w8rrz0kh18jm2wv2sfdkgncjb7vfs4hbv9"; depends=[]; }; - jomo = derive2 { name="jomo"; version="2.1-1"; sha256="1wxisjskjnm0y48amn0zwb1ih7jvbjcfihs7az1vvgmlz2y2vc7n"; depends=[]; }; + jomo = derive2 { name="jomo"; version="2.3-1"; sha256="0qwg5aank84w2jwlni470v9s7x0xnnpb1bib9r2y6j32fikyd09a"; depends=[]; }; + jose = derive2 { name="jose"; version="0.1"; sha256="1cvrjcx902pbh9xryph1kilmyf0rmbk671jvqd19a2kfwpcw7gqc"; depends=[jsonlite openssl]; }; jpeg = derive2 { name="jpeg"; version="0.1-8"; sha256="05hawv5qcb82ljc1l2nchx1wah8mq2k2kfkhpzyww554ngzbwcnh"; depends=[]; }; + jpmesh = derive2 { name="jpmesh"; version="0.3.0"; sha256="0sv199f72l5wczqlvyykpcjap68lw11pdv6lwl47ynz350vxdzlm"; depends=[broom dplyr foreach geojsonio leaflet magrittr miniUI purrr readr rgdal shiny sp tibble tidyr]; }; + jqr = derive2 { name="jqr"; version="0.2.4"; sha256="1w4832pymnavgrlhldqg1mdf0bkd3rwfywgd98hxik51yadfszjb"; depends=[BH lazyeval magrittr Rcpp]; }; jrich = derive2 { name="jrich"; version="0.60-35"; sha256="1y486bfqmfg3f22wm0lfk3lh20ljgi8qrgn5jji0f417wh48nf0x"; depends=[ape]; }; jrvFinance = derive2 { name="jrvFinance"; version="1.03"; sha256="16mki26ns593xn1p1la2ihkddlwvzwdvjr3h2vz71bq5db11iffq"; depends=[]; }; js = derive2 { name="js"; version="0.2"; sha256="1dxyyrmwwq07l6pdqsvxscpciy4h1021h9ymx8hi2vqvv0mdrz76"; depends=[V8]; }; - jsonlite = derive2 { name="jsonlite"; version="0.9.19"; sha256="1hbdraj3xv2l2gs9f205j8z054ycy0bfdvwdhvpa9qlji588sz7g"; depends=[]; }; + jsonld = derive2 { name="jsonld"; version="1.1"; sha256="1bmfdcyjcz3cgy0vkliwvd97kww8djdib08bsq99v485gspl2x87"; depends=[curl jsonlite V8]; }; + jsonlite = derive2 { name="jsonlite"; version="1.2"; sha256="0k966hzp3qnwck7fgd76w49zrz39s7pqyywws17bhbcd8rh4csyb"; depends=[]; }; + jsonvalidate = derive2 { name="jsonvalidate"; version="1.0.0"; sha256="08c1s8fk95np4l6km077dmd1nibhhggi80f5465hhbq521gm0awl"; depends=[V8]; }; + jtGWAS = derive2 { name="jtGWAS"; version="1.5"; sha256="01f1wrbgj7v6pzrx5vd8pgpm78fanyx59s84m5a5732q5g39shlk"; depends=[Rcpp]; }; jtrans = derive2 { name="jtrans"; version="0.2.1"; sha256="18zggqdjzjhjwmsmdhl6kf35w9rdajpc2nffag4rs6134gn81i3m"; depends=[]; }; - jug = derive2 { name="jug"; version="0.1.1"; sha256="0dv6v8nxrbvlyhchzjq0m4x5v88ayrrw5xgrphx865ywsxllrb85"; depends=[base64enc httpuv infuser jsonlite magrittr mime R6 stringi]; }; + jug = derive2 { name="jug"; version="0.1.4"; sha256="1rf3akm9w5sbp59w1070ygqz1b9krq6lilbxp9r4w234c8k81a27"; depends=[base64enc httpuv infuser jsonlite magrittr mime R6 webutils]; }; + junr = derive2 { name="junr"; version="0.1.1"; sha256="1rkr6kyf2p3rr39w0nqfvcrcd2b0r411if7812zijnn20vrmsmda"; depends=[httr jsonlite]; }; jvnVaR = derive2 { name="jvnVaR"; version="1.0"; sha256="0zh0dc6wqlrxn5r2yv9vkpyfb8xsbdidkjv9g6qr94fyxlbs4yci"; depends=[]; }; - kSamples = derive2 { name="kSamples"; version="1.2-3"; sha256="0pb32pdh23qm1svfayk50bv75mbz50rc62013sdx1h9zmrcz5f37"; depends=[SuppDists]; }; - kantorovich = derive2 { name="kantorovich"; version="1.1.0"; sha256="06c1w6wqhlsx30lyy4126llbvaalppsibwwikw2dn316898vslg4"; depends=[gmp rcdd]; }; + jwutil = derive2 { name="jwutil"; version="1.1.1"; sha256="114vph86722v89iwyla7skl06cv87ymfy6nmca5iyxwx1z78zddz"; depends=[checkmate Rcpp]; }; + kSamples = derive2 { name="kSamples"; version="1.2-4"; sha256="1k026wbzcrzzr3ji3gdnhbj13nrmbp6ybbcki3v3gk6s0xk6f2rx"; depends=[SuppDists]; }; + kamila = derive2 { name="kamila"; version="0.1.1.1"; sha256="06jl868i8a6zg3pyaf1r6ccd33ya5f83apc5w6d3m111dzdqqlcy"; depends=[abind gtools KernSmooth mclust plyr Rcpp]; }; + kantorovich = derive2 { name="kantorovich"; version="2.0.0"; sha256="0y965nkhgk0z2q2j3sycfg76aqqi3ry8avg0bz9xggpd60bhh5vd"; depends=[gmp lpSolve rcdd Rglpk]; }; kappaSize = derive2 { name="kappaSize"; version="1.1"; sha256="0jrjal8cvy2yg0qiyilmv3jl3ib5k9jg8gp2533kdsx4m0sack04"; depends=[]; }; kappalab = derive2 { name="kappalab"; version="0.4-7"; sha256="16bwbwwqmq2w7vy8p3wg0y80wfgc8q5l1ly1mqh51xi240z1qmq0"; depends=[kernlab lpSolve quadprog]; }; kaps = derive2 { name="kaps"; version="1.0.2"; sha256="0jg4smbq51v88i3815icb284j97iam09pc52rv3izxa57nv9a0gz"; depends=[coin Formula survival]; }; karaoke = derive2 { name="karaoke"; version="1.0"; sha256="1kx11lijdffhhh8prjgsamshgg2v29b2i129fjqi079waa335352"; depends=[seewave tuneR]; }; kcirt = derive2 { name="kcirt"; version="0.6.0"; sha256="1gm3c89i5dq7lj8khc12v30j1c0l1gwb4kv24cyy1yw6wg40sjig"; depends=[corpcor mvtnorm snowfall]; }; - kdecopula = derive2 { name="kdecopula"; version="0.5.0"; sha256="1cwd81fhjzdzmsn9mnj71bzqf1s5hwlaq4sijww0d81i6nwcafjl"; depends=[cubature lattice locfit qrng Rcpp RcppArmadillo VineCopula]; }; + kdecopula = derive2 { name="kdecopula"; version="0.8.0"; sha256="1s116d6qh4zc7gazhylhzcwiifkd2xmaqi58r4ns82d7rv54gkaf"; depends=[lattice locfit qrng quadprog Rcpp RcppArmadillo]; }; kdetrees = derive2 { name="kdetrees"; version="0.1.5"; sha256="1plf2yp2vl3r5znp5j92l6hx1kgj0pzs7ffqgvz2nap5nf1c6rdg"; depends=[ape distory ggplot2]; }; + kdevine = derive2 { name="kdevine"; version="0.3.0"; sha256="0imi8n70xw8bmxnqw4fam6d85ib7bhaygg3q56xrml7mn2wik4gc"; depends=[doParallel foreach kdecopula ks qrng Rcpp VineCopula]; }; kedd = derive2 { name="kedd"; version="1.0.3"; sha256="17rwz3yia95xccbxwn43wr6c9b3062094yfahnnnk3wfijyhlxiq"; depends=[]; }; keep = derive2 { name="keep"; version="1.0"; sha256="12803hhrs9v94rv6qaihk1f1ls7lx4cy2pa30v4p1r2z9afx9bjf"; depends=[]; }; + kehra = derive2 { name="kehra"; version="0.1"; sha256="1cc0bmbg0dncay50ap7cs2516qngzz3ddaab0jk5r6lwfq87h8qx"; depends=[Hmisc raster reshape2 sp stringr xts zoo]; }; kelvin = derive2 { name="kelvin"; version="2.0-0"; sha256="04xdgpmysksm79m3vqmb4zra3pq09nv99w4fbdla1lmy7z8pkdrk"; depends=[Bessel]; }; - kequate = derive2 { name="kequate"; version="1.5.0"; sha256="0yalh3j5kcz3zxk1afny7v22n7y5xzbifqifrr1sjm8czi8hdi01"; depends=[equateIRT ltm mirt]; }; + kequate = derive2 { name="kequate"; version="1.6.0"; sha256="0m8l1d43gb25zdwbv0ymnazm02m2qxg5pcir37n55sl08dh0zyby"; depends=[equateIRT ltm mirt]; }; kerdiest = derive2 { name="kerdiest"; version="1.2"; sha256="16xj2br520ls8vw5qksxq9hqlpxlwmxccfk5balwgk5n2yhjs6r3"; depends=[chron date evir]; }; kergp = derive2 { name="kergp"; version="0.2.0"; sha256="1xamj19v84m1f9ls8ac8xbm6airyjf96i1l48yy4l2rvjdmx6m9l"; depends=[doParallel MASS numDeriv Rcpp testthat]; }; - kernDeepStackNet = derive2 { name="kernDeepStackNet"; version="1.0.1"; sha256="03viwv4fsdby10pqimhgfjv8l654gvggrw4xxikc81w2iyachar8"; depends=[DiceKriging glmnet globalOptTests lhs mvtnorm Rcpp RcppEigen]; }; + kernDeepStackNet = derive2 { name="kernDeepStackNet"; version="2.0.1"; sha256="1ypyb6i64jskq2agbpb6wc6y3fn4i7z4fjjfpl97q8f0rif1lpfj"; depends=[caret DiceKriging DiceOptim GA GenSA glmnet globalOptTests lhs matrixStats mvtnorm Rcpp RcppEigen]; }; kerndwd = derive2 { name="kerndwd"; version="1.1.2"; sha256="1d55qrayay3d5p7lxj50mv1yj3l1xh10i3j937lmjn83ffhdq40a"; depends=[]; }; kernelFactory = derive2 { name="kernelFactory"; version="0.3.0"; sha256="001kw9k3ivd4drd4mwqapkkk3f4jgljiaprhg2630hmll064s89j"; depends=[AUC genalg kernlab randomForest]; }; - kernlab = derive2 { name="kernlab"; version="0.9-23"; sha256="01y1vy1798wspg5qczvgr1k2fmp8pv2y9h8x5kqf0pp73qba9lpg"; depends=[]; }; - keyplayer = derive2 { name="keyplayer"; version="1.0.1"; sha256="0ms5zvb3shhhzry2aab749dyiklj8bf55mzlkvsy1as8f7mpf6ar"; depends=[matpow sna]; }; + kernlab = derive2 { name="kernlab"; version="0.9-25"; sha256="0qnaq9x3j2xc6jrmmd98wc6hkzch487s4p3a9lnc00xvahkhgpmr"; depends=[]; }; + kernscr = derive2 { name="kernscr"; version="1.0.3"; sha256="0h3xv76dxch8kv4z7cgx60iaikk6906n75c4kc1mccpw0jvyxrvb"; depends=[MASS mvtnorm]; }; + keyplayer = derive2 { name="keyplayer"; version="1.0.3"; sha256="0j4n46r9ivkbzqz8g22dq2bpmx7bs05yb5qp27p9jnfh5x19v2ds"; depends=[igraph matpow sna]; }; keypress = derive2 { name="keypress"; version="1.0.0"; sha256="16msbanmbv2kf09qvl8bd9rf1vr7xgcjzjhzngyfyxv90va3k86b"; depends=[]; }; + keyringr = derive2 { name="keyringr"; version="0.4.0"; sha256="04f0z6mqj75l5qhiab0zvjsvz3jz1bp6dfazkpgihjmls5k11dnh"; depends=[stringr]; }; kfigr = derive2 { name="kfigr"; version="1.2"; sha256="0hmfh4a95883p1a63lnziw8l9f2g0fn0xzxzh36x9qd9nm7ypmkw"; depends=[knitr]; }; kimisc = derive2 { name="kimisc"; version="0.3"; sha256="1cdjhfdfidilvz0w92xfjwwnp2h73y8l1n7fxnh5jsv6wnx491l4"; depends=[plyr pryr]; }; kin_cohort = derive2 { name="kin.cohort"; version="0.7"; sha256="0wijsjz0piz5j9rm2nr3d5dfpiyba740mbfbkmfll9pz72s58wz8"; depends=[survival]; }; kineticF = derive2 { name="kineticF"; version="1.0"; sha256="1k54zikgva9fw9c4vhkc9b0kv8sq5pmc962s8wxr6qv97liv9p46"; depends=[circular lqmm MASS plotrix sp splancs]; }; kinfit = derive2 { name="kinfit"; version="1.1.14"; sha256="0gb43pghgllb9gzh8jzzpfmc46snv02ln4g3yqsdah3cyqnck0ih"; depends=[]; }; + kinn = derive2 { name="kinn"; version="0.2"; sha256="14vckrk3sppxswccy4qiyc7pbzkwncwag4acbkbqfnm84pxblh3m"; depends=[caret caTools igraph KRLS mclust stringr]; }; kinship2 = derive2 { name="kinship2"; version="1.6.4"; sha256="19r3y5as83nzk922hi4fkpp86gbqxdg1bgng798g1b073bp6m9yj"; depends=[Matrix quadprog]; }; kissmig = derive2 { name="kissmig"; version="1.0-3"; sha256="1pi1x3gdbqrhr1km1hqj15k8wyrgs697fnxgjgxga1irbn8bi482"; depends=[raster]; }; kitagawa = derive2 { name="kitagawa"; version="2.1-0"; sha256="1ddyd0rwwmdpbq823qass5dlp2lvi9d64wpl61ik6fghms2p9ryr"; depends=[kelvin]; }; - kknn = derive2 { name="kknn"; version="1.3.0"; sha256="17lg3dy5b4vs7g6d83ai9chz94sm6bla9rk42gzyqlf9n341cji4"; depends=[igraph Matrix]; }; + kknn = derive2 { name="kknn"; version="1.3.1"; sha256="1nzkg3dxaiqp87p56wm895qx5xn86hv5hjr73qvl1yiaxiq0x112"; depends=[igraph Matrix]; }; klaR = derive2 { name="klaR"; version="0.6-12"; sha256="10nkqb1zradbvifgv1fm373mhyydgdjjgmnw2442a2lark59z3vs"; depends=[combinat MASS]; }; klausuR = derive2 { name="klausuR"; version="0.12-10"; sha256="12fjs4dnwaki8sz718xgsg8qrqhsgf87cs0bylf0p3f5k8hrmk4b"; depends=[polycor psychometric xtable]; }; klin = derive2 { name="klin"; version="2007-02-05"; sha256="0j0hr4bppzk754a66q5z42h7jzfavqpxgl7y266804aginfqm1ax"; depends=[Matrix]; }; @@ -5027,7 +6282,7 @@ in with self; { kmc = derive2 { name="kmc"; version="0.2-2"; sha256="0ldyhlqdrbygvhpy4b9xp52zjvjmb0gaph0v9fhla707f63i21m5"; depends=[emplik Rcpp rootSolve]; }; kmconfband = derive2 { name="kmconfband"; version="0.1"; sha256="10n5w8k57faqcclwshs4m66i2i5b70i6f3xq5nqlgsi2ldkysbc9"; depends=[survival]; }; kmeans_ddR = derive2 { name="kmeans.ddR"; version="0.1.0"; sha256="1i87cxakjbq1xwyjyyzv1xiqbrncsqx6baviidcdm3n0pakrqdsg"; depends=[ddR Rcpp]; }; - kmi = derive2 { name="kmi"; version="0.5.1"; sha256="0519mi7kwrsfpili7y8nmyiky6qwf8xkd0n7cwj02c8d119bk9sa"; depends=[mitools survival]; }; + kmi = derive2 { name="kmi"; version="0.5.2"; sha256="0w440r3daksghvimbm0avp6c3rjvxaxsawvn7ig5bwnw60kry9il"; depends=[mitools survival]; }; kml = derive2 { name="kml"; version="2.4.1"; sha256="1my9gcripiqc6iphycjr3srj8qxy05yvd0648vblygrx2qym5hy2"; depends=[clv longitudinalData]; }; kml3d = derive2 { name="kml3d"; version="2.4.1"; sha256="1xp95fm7ncmf5mpcc9zkqf6h89g4a7qdgc2snrsy16znsjmncssq"; depends=[clv kml longitudinalData misc3d rgl]; }; kmlShape = derive2 { name="kmlShape"; version="0.9.5"; sha256="1p35ihjq84jnzq78yksdblc0c1qcn13f8n4khddsxcqvk3a44xb1"; depends=[class kml lattice longitudinalData]; }; @@ -5035,165 +6290,204 @@ in with self; { kmodR = derive2 { name="kmodR"; version="0.1.0"; sha256="1y1pqrrralklflyb1dw8bslfcyqrw8ryijfbhkwba7ykpxcf9fda"; depends=[]; }; knitLatex = derive2 { name="knitLatex"; version="0.9.0"; sha256="1igacc2sx8897wmnhh8kngd0fq6zqbi30chy5c8jw60zc38mi3wi"; depends=[knitr]; }; knitcitations = derive2 { name="knitcitations"; version="1.0.7"; sha256="0sx7sxrmm9x01sh3bcp9qqpvljfss9f1hr6h4dcfns8x6f60s5v6"; depends=[digest httr RefManageR]; }; - knitr = derive2 { name="knitr"; version="1.12.3"; sha256="1v3rzv6wq8mvpdrljsaqk4z3f8323jnv385js24wmn4fglqly6dz"; depends=[digest evaluate formatR highr markdown stringr yaml]; }; + knitr = derive2 { name="knitr"; version="1.15.1"; sha256="1pbxd3k7kv5sa1a5gxm0zc2bhjxdgx2nfch9xap5k85djmgsfqc1"; depends=[digest evaluate highr markdown stringr yaml]; }; knitrBootstrap = derive2 { name="knitrBootstrap"; version="1.0.0"; sha256="0pshn2slzqwpryklslsxwh1dmqcnwv6bwi7yfm6m342wjybpk0wl"; depends=[knitr markdown rmarkdown]; }; knnGarden = derive2 { name="knnGarden"; version="1.0.1"; sha256="1gmhgr42l6pvc6pzlq5khrlh080795b0v1l5xf956g2ckgk5r8m1"; depends=[cluster]; }; knnIndep = derive2 { name="knnIndep"; version="2.0"; sha256="1fwkldgs2994svf3sj90pwsfx6r22cwwa22b30hdmd24l8v9kzn7"; depends=[]; }; knncat = derive2 { name="knncat"; version="1.2.2"; sha256="1d392910y3yy46j8my1a7m0xkij2rc6vwq5fg22qk00vqli8drz2"; depends=[]; }; knockoff = derive2 { name="knockoff"; version="0.2.1"; sha256="197icnyxxmi6f0v0p2zm4910grbgkfjkd3xql79ny04ik047v0kp"; depends=[glmnet RJSONIO]; }; - koRpus = derive2 { name="koRpus"; version="0.06-4"; sha256="16pc52a63zyn68hfgqb9yim5wcmmyd8w1qfhg5skcf1v4lvs8yjl"; depends=[]; }; + knotR = derive2 { name="knotR"; version="1.0-1"; sha256="02mr950150m2gzagxf5yzps8fnwspagh3k8prh9zww2jss0471rm"; depends=[]; }; + kntnr = derive2 { name="kntnr"; version="0.4.0"; sha256="0vcmm4vjawmyaqpqv0g6y5dfcixn0rjhcfr3nfc2781a4w7ydnc9"; depends=[base64enc dplyr httr jsonlite lazyeval lubridate purrr rstudioapi stringr]; }; + koRpus = derive2 { name="koRpus"; version="0.06-5"; sha256="0anip3m7shp8lj2xd2gks7cbwxfkhp3pz9hn7ijf7b5q5r4gvl15"; depends=[]; }; kobe = derive2 { name="kobe"; version="1.3.2"; sha256="1z64jwrq6ddpm22cvk2swmxl1j7qyz0ddk3880c7zfq6gk7f9bxl"; depends=[coda emdbook ggplot2 MASS plyr reshape]; }; kofnGA = derive2 { name="kofnGA"; version="1.2"; sha256="1j4gx6pkmasgbgcdlg6i5nzfrmim61c2hw34k5zfmwfbkrsgb575"; depends=[]; }; kohonen = derive2 { name="kohonen"; version="2.0.19"; sha256="0fi94m2gpknzk31q3mjkplrq9qwac8bjc8hdlb3zxvz6rabbhxrr"; depends=[class MASS]; }; + kokudosuuchi = derive2 { name="kokudosuuchi"; version="0.2.0"; sha256="1sk7r5v3d65w126vin9gawan3f21zrd9ps974l9nxj7kv1pa3szh"; depends=[digest dplyr httr purrr rgdal shiny xml2]; }; kolmim = derive2 { name="kolmim"; version="1.0"; sha256="0g1i0cazi4nhfwdd3ywqrar1sn7bw77w38qjii045w5vqg05srkp"; depends=[]; }; + kpcalg = derive2 { name="kpcalg"; version="1.0.1"; sha256="1gd5bisyfwb12l9jmwhi2arlxrabc01vgv4m1qqs23vybsd6yh52"; depends=[energy graph kernlab mgcv pcalg RSpectra]; }; kpodclustr = derive2 { name="kpodclustr"; version="1.0"; sha256="1fywgdj4q3kg8y9lwnj6vxg9cwgs5ccwj6m3knfgg92f8ghnsbsw"; depends=[clues]; }; kriens = derive2 { name="kriens"; version="0.1"; sha256="1qi65k9fsbbkbw0w40rv60p5ygrvr10rmlyxdaqa5bdpcmrbly5z"; depends=[]; }; kriging = derive2 { name="kriging"; version="1.1"; sha256="04bxr34grf2nlrwvgrlh84pz7yi0r8y7dc2wk0v5h5z6yf5a085w"; depends=[]; }; - krm = derive2 { name="krm"; version="2015.3-4"; sha256="0zm2d3naprvv10ac28k4h2r6f1ygi8wic0gwbm6mvgwpb530gga1"; depends=[kyotil]; }; - ks = derive2 { name="ks"; version="1.10.2"; sha256="0fjnnwlf60hdipw0aqbi0w6szhg4dswdim9fbfq56wkj68ax4003"; depends=[KernSmooth misc3d multicool mvtnorm rgl]; }; + krm = derive2 { name="krm"; version="2016.7-9"; sha256="0yc8agnb4685fa00pnwsxwc4vnr2aj2dwb6zxppj62r6c59xl47f"; depends=[kyotil]; }; + ks = derive2 { name="ks"; version="1.10.5"; sha256="12ianxlfrdzvb56y42p3mpyl01fqxrm97xym4wghvqyz59w0x51k"; depends=[KernSmooth misc3d multicool mvtnorm rgl]; }; kselection = derive2 { name="kselection"; version="0.2.0"; sha256="1arg96r2pldvb89rfqnfpjxwksyac2mhmbimbkwzm7wrnbnrcn5d"; depends=[]; }; ksrlive = derive2 { name="ksrlive"; version="1.0"; sha256="1zd3ggzgjks0jay69s5m7ihbd7v7zha6ssj2m9ahnyp00ghpk83j"; depends=[tightClust]; }; kst = derive2 { name="kst"; version="0.2-1"; sha256="1wy9cvvln994qgr0p7qa9qs1jd7gjv6ch65gg6i42cf9681m9h65"; depends=[proxy relations sets]; }; ktsolve = derive2 { name="ktsolve"; version="1.1"; sha256="0b5myr093v3qaj9gzbw1w728i5ij418whxxpicj51w657dcy647k"; depends=[]; }; ktspair = derive2 { name="ktspair"; version="1.0"; sha256="1v63982jidxlcf2syahcb29myv34kc790l7lwyfxx9l50ssb812n"; depends=[Biobase]; }; kulife = derive2 { name="kulife"; version="0.1-14"; sha256="070ayy6fr9nsncjjljikn2i5sp2cx3xjjqyc64y2992yx74jgvvd"; depends=[]; }; + kutils = derive2 { name="kutils"; version="0.93"; sha256="18p6cxvzfp3vq4058g6kjf0zgavs4yx69ppx6mxbazaqkjq2vysg"; depends=[lavaan openxlsx plyr xtable]; }; kwb_hantush = derive2 { name="kwb.hantush"; version="0.2.1"; sha256="0rjnhhzvjhhl0r2ixz9vkgnqkrnnk772253zy7xkpadj7ws69jsf"; depends=[hydroGOF lattice]; }; - kyotil = derive2 { name="kyotil"; version="2015.11-13"; sha256="0q1xw1dhs02d6fjf6vjns15b1y11h34g4m7scsyvp9dch260bljf"; depends=[]; }; - kza = derive2 { name="kza"; version="3.2.0"; sha256="0h2ri3cvg2x0xd7z4nmxf9f5yiaznfrripmv4h4jhs719xbmlcxk"; depends=[]; }; + kyotil = derive2 { name="kyotil"; version="2016.11-9"; sha256="02lcnljpj9yvxmk5drxgz94m6kw8nx8bh6n1wzivplw8cfqh6d5s"; depends=[]; }; + kza = derive2 { name="kza"; version="4.0.0"; sha256="0yfn6ijbskdkcgbgk4fwhgiiy34cw9k9vy1psi779mqd9kyjf56j"; depends=[]; }; + kzfs = derive2 { name="kzfs"; version="1.0.1.5"; sha256="041cwg3sz5zfngm7qj9v2cx2023n8r8by08541573261ihca1inl"; depends=[digest kzft]; }; kzft = derive2 { name="kzft"; version="0.17"; sha256="1y6almhs1x21cr4bbf5fj3mnhp65ivzs869660cyg70sva853sv7"; depends=[polynom]; }; kzs = derive2 { name="kzs"; version="1.4"; sha256="1srffwfg0ps8zx0c6hs2rc2y2p01qjl5g1ypqsbhq88vkcppx1w9"; depends=[lattice]; }; + l0ara = derive2 { name="l0ara"; version="0.1.3"; sha256="0igav0wxvnnjcrh1wqzgvn91ndq9a25yxhxyddnsfvn6f45rc0wn"; depends=[Rcpp RcppArmadillo]; }; l2boost = derive2 { name="l2boost"; version="1.0"; sha256="1p0sbvlnax4ba4wjkh3r0bmjs601k590g7bdfk6wxvlj42jxcnkl"; depends=[MASS]; }; - laGP = derive2 { name="laGP"; version="1.2-1"; sha256="0b614bl87kyfd19a3gznmlgzf9v3mwscxrylgc0s08s0mg6411p8"; depends=[tgp]; }; + laGP = derive2 { name="laGP"; version="1.3-2"; sha256="197mp5rlrfyp9aankbi1lw40vn7m9pkkq7rpr1a6y7x4sp3spr4m"; depends=[tgp]; }; labdsv = derive2 { name="labdsv"; version="1.8-0"; sha256="0rbf7cswnj534jdi5hfaai12nbxj6l96f02c73ynraqvdqxb1bnz"; depends=[cluster MASS mgcv]; }; - label_switching = derive2 { name="label.switching"; version="1.5"; sha256="0hkz5ncmkp4687xz24bk4ypmvp65lahaf23b07jwis2i7wvmldg2"; depends=[combinat lpSolve]; }; + label_switching = derive2 { name="label.switching"; version="1.6"; sha256="0k6f31gwcjfncsgd5cm9zygplif2wr8zjqrw4gmrnxcgp2z58a9w"; depends=[combinat lpSolve]; }; labeledLoop = derive2 { name="labeledLoop"; version="0.1"; sha256="0gq392h0sab8k7k8bzx6m7z5xpdsflldhwbpdf92zbmkbzxsz00m"; depends=[]; }; labeling = derive2 { name="labeling"; version="0.3"; sha256="13sk7zrrrzry6ky1bp8mmnzcl9jhvkig8j4id9nny7z993mnk00d"; depends=[]; }; + labelled = derive2 { name="labelled"; version="1.0.0"; sha256="02jg7zq52wfq2dw8a26vmp28bv88v651ysbqfqf7jv3dr9xgim4f"; depends=[haven]; }; labelrank = derive2 { name="labelrank"; version="0.1"; sha256="03pmpkjdhgw80473kdzdz4s4828pa8f5bja2zqicxrhvyvicvz6f"; depends=[pdist]; }; labeltodendro = derive2 { name="labeltodendro"; version="1.3"; sha256="13kpmv26zzjf5iwpr4vs797irplmaixp1agx5v80wr4lvd2hirvg"; depends=[]; }; labstatR = derive2 { name="labstatR"; version="1.0.8"; sha256="1qs76vhw6ihsriq5v0s980fxbb0pbvgwqm0a97b226cpqqabkpfm"; depends=[]; }; - labstats = derive2 { name="labstats"; version="1.0"; sha256="1cij8dibbmixbg3mf87rdypypl1rsy5wlgfsyhg7l8zg1i2gql1z"; depends=[]; }; + labstats = derive2 { name="labstats"; version="1.0.1"; sha256="1780slp9l1rqwr5ika6hv606jzbaa3g1ywzkjkd3ff2gb0cby3ni"; depends=[]; }; laeken = derive2 { name="laeken"; version="0.4.6"; sha256="1rhkv1kk508pwln1d325iq4fink2ncssps0ypxi52j9d7wk78la6"; depends=[boot MASS]; }; laercio = derive2 { name="laercio"; version="1.0-1"; sha256="0la6fxv5k9zq4pyn8dxjiayx3vs9ksm9c6qg4mnyr9vs12z53imm"; depends=[]; }; - lakemorpho = derive2 { name="lakemorpho"; version="1.0"; sha256="0kxd493cccs24qqyw58110d2v5w8560qfnbm6qz7aki0xa7kaqrg"; depends=[geosphere maptools raster rgdal rgeos sp]; }; + lakemorpho = derive2 { name="lakemorpho"; version="1.1.0"; sha256="1qdh67a6a6iibvvba12z763xf989qfh08b3xgk1hy1irgc8myvll"; depends=[cluster geosphere maptools raster rgdal rgeos sp]; }; laketemps = derive2 { name="laketemps"; version="0.5.1"; sha256="04742r379bzgbfr4243wwkb26cvfmnw50jzgygq7vblq00grzska"; depends=[dplyr reshape2]; }; - lamW = derive2 { name="lamW"; version="1.1.0"; sha256="0kxp16riyj4gvzigx1dg3hl1jjd9w6d9mzbsf67wqdcml38wn4c6"; depends=[Rcpp]; }; - lambda_r = derive2 { name="lambda.r"; version="1.1.7"; sha256="1lxzrwyminc3dfb07pbn1rmj45kplxgsb17b06pzflj728knbqwa"; depends=[]; }; - lambda_tools = derive2 { name="lambda.tools"; version="1.0.7"; sha256="1hskmsd51lvfc634r6bb23vfz1vdkpbs9zac3a022cgqvhvnbmxb"; depends=[lambda_r]; }; + lamW = derive2 { name="lamW"; version="1.2.0"; sha256="06kznvlrbllizw1byf5nrnpdk2hjjp0bf84wr9dcb5pph4pmnarl"; depends=[Rcpp RcppParallel]; }; + lambda_r = derive2 { name="lambda.r"; version="1.1.9"; sha256="1j6287iqvs3ill6r5g6ksf5809qp0l0nf20ib8266m1r09lc9j14"; depends=[]; }; + lambda_tools = derive2 { name="lambda.tools"; version="1.0.9"; sha256="1wslxxh6rxny3n06y16dqwpczi3k42vrq4pbwwshl6kzhl56r45b"; depends=[lambda_r]; }; landest = derive2 { name="landest"; version="1.0"; sha256="1lp5sfqk0n7i23fmwjgzsabml1fsji1h9xq5khxzaz1bzqv1s08g"; depends=[survival]; }; landpred = derive2 { name="landpred"; version="1.0"; sha256="1bl17xkx18i8i7arccnjmxvhjn4yiy7w64hg4n0xmhk8pg0l3mrg"; depends=[survival]; }; landsat = derive2 { name="landsat"; version="1.0.8"; sha256="07zvj1yyryxk7rwgcrf1kl32p2karkkqz6xrnwy1096dg9iw2js7"; depends=[lmodel2 mgcv rgdal sp]; }; - landsat8 = derive2 { name="landsat8"; version="0.1-9"; sha256="027p4cpxnx25m77z0n5kl4rs0zywwskv7ncfky0fldffg7mqaq42"; depends=[rgdal sp]; }; + landsat8 = derive2 { name="landsat8"; version="0.1-10"; sha256="169b5ka98ka9chbmksz6syaygc9wgl8i2gz1h2xkxj3lk9jcg01r"; depends=[rgdal sp]; }; + landscapeR = derive2 { name="landscapeR"; version="1.1.3"; sha256="0mgnm1gq19ybq7dwv5agxyrldiv4743np8b9r2ql2h6gwk8rp5f7"; depends=[raster]; }; languageR = derive2 { name="languageR"; version="1.4.1"; sha256="0grkhdjz9dcrgq6qwv7wpwmckn3mfv022c5wrx29b1dxafd0qzm0"; depends=[]; }; + languagelayeR = derive2 { name="languagelayeR"; version="1.0.0"; sha256="0lca079nnqppbr7k5pfa7qfc879kws34hrxcs49y12qfv7hsk576"; depends=[httr magrittr rjson]; }; lar = derive2 { name="lar"; version="0.1-2"; sha256="0qda0y4ag10kg83wxs3z754kc8c1dg2rwciy64klk7an4ln43i5b"; depends=[data_table treemap xlsx]; }; + largeList = derive2 { name="largeList"; version="0.3.0"; sha256="0lviw0rzpd7453y0swab74kg8yc2byg88ca1fmf1f8zffgrdx9ld"; depends=[]; }; + largeVis = derive2 { name="largeVis"; version="0.1.10.2"; sha256="16qsc0jv8gbacgjal6hkqdm52yd0n973bkgab0zp1hldj9m4ykl2"; depends=[dbscan ggplot2 Matrix Rcpp RcppArmadillo RcppProgress testthat]; }; lars = derive2 { name="lars"; version="1.2"; sha256="0blj44wqrx6lmym1m9v6wkz8zxzbjax2zl6swgdczci0ixb5nx34"; depends=[]; }; laser = derive2 { name="laser"; version="2.4-1"; sha256="1f6j3xdks0w63fqjj9q8ng2m6ss90kcnsrigwal0bqskpvrpiqyz"; depends=[ape geiger]; }; lasso2 = derive2 { name="lasso2"; version="1.2-19"; sha256="0zkwjsd42a6z4gylq9xbs4z8n1v7ncwvssjnn3h4yz1icjfzzlvk"; depends=[]; }; + lassopv = derive2 { name="lassopv"; version="0.1.3"; sha256="07b7n74z4jvrirf0rc0sbvz9nm2s2s22mb8y973iwpf0i7fqxq2c"; depends=[lars]; }; lassoscore = derive2 { name="lassoscore"; version="0.6"; sha256="1i3i07da8sw9w47rcflhylz8zxvzkyycbc1a4gf6hbcpp21rqd7d"; depends=[glasso glmnet Matrix]; }; lassoshooting = derive2 { name="lassoshooting"; version="0.1.5-1"; sha256="0ixjw8akplcfbzwyry9p4bhbcm128yghz2bjf9yr8np6qrn5ym22"; depends=[]; }; lasvmR = derive2 { name="lasvmR"; version="0.1.2"; sha256="1yzyfacr47wkpv9bblm7hvx1hgnzbhy1421bpnh95xfxxlzahy5n"; depends=[checkmate Rcpp]; }; - latdiag = derive2 { name="latdiag"; version="0.2-2"; sha256="1893xcwpvpv3d3pnkzxjqgbbn9cw8gqg9pbg8vaas39785jq29sp"; depends=[]; }; + latdiag = derive2 { name="latdiag"; version="0.2-3"; sha256="0i2mqk3ldg5kf4d8sfljgjsqbdin7v69anmc2rrxgy28bmvykf9d"; depends=[]; }; latentnet = derive2 { name="latentnet"; version="2.7.1"; sha256="0bjac9cid11pmhmi2gb4h3p4h9m57ngxx7p73a07afmfjk9p7h5m"; depends=[abind coda ergm mvtnorm network sna statnet_common]; }; latex2exp = derive2 { name="latex2exp"; version="0.4.0"; sha256="12nbcgfmv13k6sc6m326ras9bcvy380b7rxcxphn06r3cfkby0zw"; depends=[magrittr stringr]; }; - lattice = derive2 { name="lattice"; version="0.20-33"; sha256="0car12x5vl9k180i9pc86lq3cvwqakdpqn3lgdf98k9n2h52cilg"; depends=[]; }; + lattice = derive2 { name="lattice"; version="0.20-34"; sha256="0615h69czr73k47whhzimf1qxv5qk0cabcrkljwhyrn6m6piq6ja"; depends=[]; }; latticeDensity = derive2 { name="latticeDensity"; version="1.0.7"; sha256="1y33p8hfmpzn8zl4a6zxg1q3zx912nhqlilca6kl5q156zi0sv3d"; depends=[spam spatstat spdep splancs]; }; latticeExtra = derive2 { name="latticeExtra"; version="0.6-28"; sha256="1hkyqsa7klk5glj9y1hg3rxr5qilqw8h0017zc4c3nps7lr9a1kq"; depends=[lattice RColorBrewer]; }; - lava = derive2 { name="lava"; version="1.4.1"; sha256="1xwyfn31nr8sppxy25a7p8yhf5isq4ah0dd45plhfclnlwrycr1l"; depends=[numDeriv]; }; + lava = derive2 { name="lava"; version="1.4.7"; sha256="1gzla8ns3n899vfz80yjx8bb2pcnrvp52c5rxxw591clba1x9jym"; depends=[numDeriv survival]; }; lava_tobit = derive2 { name="lava.tobit"; version="0.4-7"; sha256="1da98d5pndlbbw37k64fmr2mi1hvkhjxsmm3y9p4b772pz9i1pvj"; depends=[lava mvtnorm survival]; }; - lavaan = derive2 { name="lavaan"; version="0.5-20"; sha256="0vkgx0qg1xw6z89rb0lqc42pbiid4n7zhwa3zn61x9hn16y7avza"; depends=[MASS mnormt pbivnorm quadprog]; }; - lavaan_shiny = derive2 { name="lavaan.shiny"; version="1.0"; sha256="0g8snpfnz7r9ckjhjaggdh1rbxrzvm63qkrx1zp30x7i32f52bzd"; depends=[lavaan psych semPlot shiny shinyAce]; }; - lavaan_survey = derive2 { name="lavaan.survey"; version="1.1.3"; sha256="1rjh0dk2rphn3aphnghpls0sckch889p5nddpwqqbqmbbzcvfgpi"; depends=[lavaan MASS survey]; }; - lawn = derive2 { name="lawn"; version="0.1.6"; sha256="1v1f6jpz5zwfhvpwjyyqlm57rfxd38hg6bq9h2aayx2lgq5spfam"; depends=[jsonlite magrittr V8]; }; - lawstat = derive2 { name="lawstat"; version="3.0"; sha256="0398bf4jv0gnq54v6m7zl5sixspnvfwc3x3z492i38l215pc38kx"; depends=[Hmisc Kendall mvtnorm VGAM]; }; + lavaan = derive2 { name="lavaan"; version="0.5-22"; sha256="1z6b4xf9zymyikmi8q4kj0cn6xy8m2p31yc6zah539jk9cxpi304"; depends=[MASS mnormt pbivnorm quadprog]; }; + lavaan_shiny = derive2 { name="lavaan.shiny"; version="1.1"; sha256="06k9myq33p9jz7rz6ffansgi27ang4gq0s179vgsrdi10krxxg1b"; depends=[lavaan psych semPlot shiny shinyAce]; }; + lavaan_survey = derive2 { name="lavaan.survey"; version="1.1.3.1"; sha256="133hpy8s00y6jzwwzl9brdh70w26jycdm3n1c6bcryghwh3ai4xr"; depends=[lavaan MASS survey]; }; + lawn = derive2 { name="lawn"; version="0.3.0"; sha256="0rws76dzpi2gpn90la663r1g9ywvpvjicjmgb6z7k5xg1gspgs5c"; depends=[jsonlite magrittr V8]; }; + lawstat = derive2 { name="lawstat"; version="3.1"; sha256="0sdsxh2h06d3maqd1pvmnnvphaxav0z2kv5wpiy7dg17cgwv35c2"; depends=[Hmisc Kendall mvtnorm VGAM]; }; lazy = derive2 { name="lazy"; version="1.2-15"; sha256="1pdqgvn0qpfg5hcg5159ccf5qj2nd1ibai9p85rwjpddfynk6jks"; depends=[]; }; - lazyData = derive2 { name="lazyData"; version="1.0.3"; sha256="1i4jry54id8hhfla77pwk3rj2cci6na36hxj7k35k8lx666fdam2"; depends=[]; }; + lazyData = derive2 { name="lazyData"; version="1.1.0"; sha256="0mbmmx6dh8ph4lrx1b4gxbwz3jwxv4nqi0xvfzpzrm3bwbsjc634"; depends=[]; }; lazyWeave = derive2 { name="lazyWeave"; version="3.0.1"; sha256="02c3z479y6xxng2x6vp6m0rvf3jsb9n26h00l93djxads8717i1x"; depends=[Hmisc]; }; - lazyeval = derive2 { name="lazyeval"; version="0.1.10"; sha256="02qfpn2fmy78vx4jxr7g7rhqzcm1kcivfwai7lbh0vvpawia0qwh"; depends=[]; }; + lazyeval = derive2 { name="lazyeval"; version="0.2.0"; sha256="1jwdz40nznlc44hpjli7h98gnpa4d98ifggmj7z88h84n9aqywqk"; depends=[]; }; + lazyrmd = derive2 { name="lazyrmd"; version="0.2.0"; sha256="0ahm1wspvm625lx7y2zz05bvv66rlswphs84vpkcqb0dqfcn3s48"; depends=[digest htmltools htmlwidgets knitr rmarkdown]; }; lazysql = derive2 { name="lazysql"; version="0.1.3"; sha256="18vff80rl8ckjwfqi9dhzs1q35a1wrxvynidji6dy2kvvk38xnpa"; depends=[checkmate magrittr plyr]; }; - lba = derive2 { name="lba"; version="1.2"; sha256="0zfln5dc4v3yaqgdbg22nq3z2by7jnbbi9mwwwvkr4j1z70knpqg"; depends=[alabama ca MASS plotrix]; }; + lba = derive2 { name="lba"; version="2.4.1"; sha256="15ipqv6jxmiypxkzfx2gwz770nqhcp81a0ci0fzw39g2ayjs5sr3"; depends=[alabama MASS plotrix rgl scatterplot3d]; }; lbfgs = derive2 { name="lbfgs"; version="1.2.1"; sha256="0p99g4f3f63vhsw0s1m0y241is9lfqma86p26pvja1szlapz3jf5"; depends=[Rcpp]; }; lbfgsb3 = derive2 { name="lbfgsb3"; version="2015-2.13"; sha256="1jpy0j52w8kc8qnwcavjp3smvdwm1qgmswa9jyljpf72ln237vqw"; depends=[numDeriv]; }; lbiassurv = derive2 { name="lbiassurv"; version="1.1"; sha256="1i6l3y4rasqpqka7j39qjx22wjbilgc9pkp05an52aysfvfxy193"; depends=[actuar]; }; + lbreg = derive2 { name="lbreg"; version="1.0"; sha256="03pr5mjk3pfnlfafx6gk9xjsy4m5m7lj4zzvsngl95rr8hnnvvlf"; depends=[MASS]; }; lcda = derive2 { name="lcda"; version="0.3"; sha256="1ximsyn6qw2gfn7b1hdpbjs6h6nk7hrignlii0np1lbf0k8l4xxl"; depends=[poLCA]; }; - lcmm = derive2 { name="lcmm"; version="1.7.5"; sha256="0xw411vhrh7l72wwc114rm0qiaxzl2gi8sm32qy9i8mry4623cj2"; depends=[survival]; }; - lcopula = derive2 { name="lcopula"; version="0.205"; sha256="0ni8q5cdzrkcjxjj1z6kyzd0sp592vnrh3yxnwh2vl9wc41v59i9"; depends=[copula pcaPP Rcpp]; }; - lctools = derive2 { name="lctools"; version="0.2-4"; sha256="0sfb26j0mgnnzql2ylj2d3cll67j7axyr1n20sv3zgx7nblkzkjj"; depends=[MASS pscl reshape weights]; }; + lclGWAS = derive2 { name="lclGWAS"; version="1.0.3"; sha256="03b6ijqvyirv96hc3dsqf4f0zzqlmq5451mcb14d2mw3s6xy1vmq"; depends=[BH Rcpp]; }; + lcmm = derive2 { name="lcmm"; version="1.7.6"; sha256="04vapw0iwwsx3zn5q84cildr7aprr9pyrkq4gacfi8baahpqj1w9"; depends=[survival]; }; + lcopula = derive2 { name="lcopula"; version="1.0"; sha256="07a9k5fp03s6jnjawg11j4458xrsrrqxv6kf3cs58ymv0j2s1qyd"; depends=[copula pcaPP Rcpp]; }; + lctools = derive2 { name="lctools"; version="0.2-5"; sha256="02xbcmdz12vxi1hjrhibavnf792lqpjraknxz6sqz7fhfqrd8qbq"; depends=[MASS pscl reshape weights]; }; lda = derive2 { name="lda"; version="1.4.2"; sha256="03r4h5kgr8mfy44p66mfj5bp4k00g8zh4a1mhn46jw14pkhs21jn"; depends=[]; }; - ldamatch = derive2 { name="ldamatch"; version="0.6.3"; sha256="0pq62rsbvhn506n1qz8nvyl0lfkqyl80k6jq2g5c4iqf8vpcjasz"; depends=[data_table entropy foreach iterators iterpc kSamples MASS RUnit]; }; - ldatuning = derive2 { name="ldatuning"; version="0.1.0"; sha256="04313zyz5mk652hb7vqklg8ibdgf41bcr85whc2rfcxfwq0jpwpi"; depends=[ggplot2 reshape2 Rmpfr scales slam topicmodels]; }; + ldamatch = derive2 { name="ldamatch"; version="1.0.1"; sha256="1dmmjw7h0rrgwga7235bryzzvmx68gmkpy5v1pwvnkk4rxp8xamh"; depends=[car data_table entropy foreach gmp iterators iterpc kSamples MASS RUnit]; }; + ldatuning = derive2 { name="ldatuning"; version="0.2.0"; sha256="18nm4hj7733c1cp03hyddnivhiiyv7ndnw9m6j3af019jjmvf215"; depends=[ggplot2 reshape2 Rmpfr scales slam topicmodels]; }; + ldbod = derive2 { name="ldbod"; version="0.1.1"; sha256="1c34k16d740b8xfb6b2igl12hzqll87dsgm631ksp53v7j3qg7pz"; depends=[mnormt RANN]; }; ldbounds = derive2 { name="ldbounds"; version="1.1-1"; sha256="15ixrq615x64zmi6dryq3ww0dqxd0qf5xx1bs3w934sf99l46bhs"; depends=[lattice]; }; ldlasso = derive2 { name="ldlasso"; version="3.2"; sha256="0ij68zvgm8dfd2qwx6h6ygndac29qa0ddpf11z959v06n8jsnk11"; depends=[GenABEL quadprog]; }; ldr = derive2 { name="ldr"; version="1.3.3"; sha256="1c48qm388zlya186qmsbxxdcg1mdv3nc3i96lqb40yhcx2yshbip"; depends=[GrassmannOptim Matrix]; }; + ldstatsHD = derive2 { name="ldstatsHD"; version="1.0.0"; sha256="1phz9hwhfw7lcvz5gg0l3w3j3jig0bw4wxbx6j4z7dlr4bisyng8"; depends=[camel cluster corpcor evd fExtremes huge igraph MASS Matrix RBGL robustbase VGAM]; }; leaderCluster = derive2 { name="leaderCluster"; version="1.2"; sha256="1lqhckarqffm2l3ynji53a4hrfn0x7zab7znddia76r2h6nr02zb"; depends=[]; }; - leaflet = derive2 { name="leaflet"; version="1.0.1"; sha256="1hwv3aay1pl48kzd8wz073jbfky47d9lr1xv0iawnv31r488wnpj"; depends=[base64enc htmltools htmlwidgets magrittr markdown png raster RColorBrewer scales sp]; }; - leafletR = derive2 { name="leafletR"; version="0.3-3"; sha256="00xdmlv6wc47lzlm43d2klyzcqljsgrfrmd5cv8brkvvcsyj57kq"; depends=[brew jsonlite]; }; + leaflet = derive2 { name="leaflet"; version="1.1.0"; sha256="05faikqdlbsj9lvl1lvhmagys71597jvgah8b9f1fqhgyj0bwx7l"; depends=[base64enc crosstalk htmltools htmlwidgets magrittr markdown png raster RColorBrewer scales sp viridis]; }; + leafletCN = derive2 { name="leafletCN"; version="0.2"; sha256="10kkclna64jwfmmn5rw91rb4f0cxqr62027vp1699iqm553dvhhd"; depends=[htmltools jsonlite leaflet magrittr sp]; }; + leafletR = derive2 { name="leafletR"; version="0.4-0"; sha256="0j1i971dl3smq8rcsa5s4rfmmk936k2q6xa4hppfzwhrxs3xkkkx"; depends=[brew jsonlite]; }; leapp = derive2 { name="leapp"; version="1.2"; sha256="1yiqzmhgl5f3zwpcc5sz3yqrvp8p6r4w2ffdfyirirayqc96ar17"; depends=[corpcor MASS sva]; }; - leaps = derive2 { name="leaps"; version="2.9"; sha256="1ax9v983401hvb6cdswkc1k7j62j8yk6ds22qdj24vdidhdz5979"; depends=[]; }; + leaps = derive2 { name="leaps"; version="3.0"; sha256="11gjmn1azrjw5xlvdb4gknj9985kck9x8zb9np1rnk2smp6pka2m"; depends=[]; }; learNN = derive2 { name="learNN"; version="0.2.0"; sha256="0q0j25vi7hrwaf38y10m24czf3rsvj937jvkz3ns12bd8srlflah"; depends=[]; }; + learningCurve = derive2 { name="learningCurve"; version="1.0"; sha256="0hfd793kk1rl224y2vb51b0xf29xinix9q91nv51047lm6hkcfah"; depends=[ggplot2]; }; learningr = derive2 { name="learningr"; version="0.29"; sha256="1nr4ydcq2mskv4c0pmf0kxv5wm8pvjqmv19xz5yaq0j834b0n5q7"; depends=[plyr]; }; learnstats = derive2 { name="learnstats"; version="0.1.1"; sha256="1sa064cr7ykl4s1ssdfmb3v1sjrnkbwdh04hmwwd9b3x0llsi9vv"; depends=[ggplot2 Rcmdr shiny]; }; lefse = derive2 { name="lefse"; version="0.1"; sha256="1zdmjxr5xa5p3miw79mhsswsh289hgzfmn3mpj1lyzal1qgw1h5m"; depends=[ape fBasics geiger picante SDMTools vegan]; }; leiv = derive2 { name="leiv"; version="2.0-7"; sha256="15ay50886xx9k298npyksfpva8pck7fhqa40h9n3d7fzvqm5h1jp"; depends=[]; }; - lessR = derive2 { name="lessR"; version="3.4.4"; sha256="1z59hhf4g9dv9pyk51166v26lfrih2rb4xh46zwa4jdxg0scmarm"; depends=[ellipse foreign leaps MBESS readxl sas7bdat triangle]; }; + lessR = derive2 { name="lessR"; version="3.5.5"; sha256="05pf0l4irsv71c7ywdq92gwl58caphjxlxkls6vs89prib2bj4sf"; depends=[ellipse foreign leaps png readxl sas7bdat triangle]; }; lestat = derive2 { name="lestat"; version="1.8"; sha256="12w3s5yr9lsnjkr3nsay5sm4p241y4xz0s3ir56kxjqw23g6m80v"; depends=[MASS]; }; - letsR = derive2 { name="letsR"; version="2.4"; sha256="12jazq54rn1mxh7ff7hd88mqwn0n85dn0mhdbli81sr4kdnd37sl"; depends=[fields geosphere maps maptools raster rgdal rgeos sp XML]; }; + letsR = derive2 { name="letsR"; version="2.6"; sha256="19gs0xlbjvx95047pzzl36x42898qkc61qgr1isavf7hph41ak46"; depends=[fields geosphere maps maptools raster rgdal rgeos sp XML]; }; lettercase = derive2 { name="lettercase"; version="0.13.1"; sha256="0s2s42v6a3mlz6084sk5wcbap3czgbd53f9p64pxwd1yfj18lbyx"; depends=[stringr]; }; - lfactors = derive2 { name="lfactors"; version="0.7.0"; sha256="0kcn8l3k33q43mpgp862p3vfh2j58mdp3bixryyys76hhqfghqsw"; depends=[]; }; - lfda = derive2 { name="lfda"; version="1.1.1"; sha256="1af4yl1k0p1wr3zar0syyjk0bc0nkng01afp5vchh7h5bb7nza8k"; depends=[plyr rARPACK]; }; - lfe = derive2 { name="lfe"; version="2.4-1788"; sha256="1f4b8s7n40j23hab4jn6crrwagwj68vb7c31k68i748zwwnf0xjc"; depends=[Formula Matrix sandwich xtable]; }; - lfl = derive2 { name="lfl"; version="1.2"; sha256="0l922sjpdiy4ifhizl1l2azzwg83j8fy8j5bvwx6yd3fvxas51ns"; depends=[e1071 foreach forecast plyr Rcpp tseries zoo]; }; - lfstat = derive2 { name="lfstat"; version="0.8.0"; sha256="00vjkn5q4k3bqd1xfvi2s15csc126v4x0y1iiipdvs9pqwy9hc63"; depends=[dygraphs lattice latticeExtra lmom lmomRFA xts zoo]; }; + lexRankr = derive2 { name="lexRankr"; version="0.3.0"; sha256="0afgjzcmhnrq30n1mkzx51f0yk369ds5sh47a4z8z56w2w5sb8ik"; depends=[dplyr igraph magrittr Rcpp SnowballC stringr tidyr tm]; }; + lexicon = derive2 { name="lexicon"; version="0.1.1"; sha256="0iibyzmgmkkmw0x7n9j1hklf7ff0r0aayb7khg9wbgsa7x1z20im"; depends=[]; }; + lfactors = derive2 { name="lfactors"; version="1.0.0"; sha256="0j2sq3kh9qgc8z7q8j6fl2n4zih8b7y1yapswsw928b1glava8p7"; depends=[]; }; + lfda = derive2 { name="lfda"; version="1.1.2"; sha256="0y59iigcpmyrmsiwrpv5agja6vz3wxmxd9sl5hbf1ybm4d0lyky4"; depends=[plyr rARPACK]; }; + lfe = derive2 { name="lfe"; version="2.5-1998"; sha256="0i1vs9m8a9dadansczwg7jbah73bnxvidrld9inf8xyi8x15265z"; depends=[Formula Matrix sandwich xtable]; }; + lfl = derive2 { name="lfl"; version="1.3"; sha256="14x731f4gnwisd0l14l03bpmn4m2rizdfrc36bjh3lvjbv0raqhs"; depends=[e1071 foreach forecast plyr Rcpp tseries zoo]; }; + lfstat = derive2 { name="lfstat"; version="0.9.4"; sha256="0lm9fyw45kdkkjldkmagykn9p3l3jlw2ky3h00f7j6rqkizjm6r0"; depends=[dygraphs lattice latticeExtra lmom lmomRFA plyr xts zoo]; }; lga = derive2 { name="lga"; version="1.1-1"; sha256="1nkvar9lmdvsc3c21xmrnpn0haqk03jwvc9zfxvk5nwi4m9457lg"; depends=[boot lattice]; }; lgarch = derive2 { name="lgarch"; version="0.6-2"; sha256="05xksc4d6dbf5ls4lf2gpk9xyi99fikr7dva88b84rfgads1yhrh"; depends=[zoo]; }; - lgcp = derive2 { name="lgcp"; version="1.3-14"; sha256="1n9nmxgyzw6f27lx47bfz3cp62yxhdx07dh8b3wlf7b2nyx8jgjz"; depends=[fields iterators maptools Matrix ncdf4 RandomFields raster rgeos rpanel sp spatstat]; }; - lgtdl = derive2 { name="lgtdl"; version="1.1.3"; sha256="00lffc60aq1qjyy66nygaypdky9rypy607mr8brwimjn8k1f0gx4"; depends=[]; }; - lhs = derive2 { name="lhs"; version="0.13"; sha256="1wi21iyzsr6z3ina2iplqzymg9rspr6im0aik4gmh9qdbw1lj258"; depends=[]; }; + lgcp = derive2 { name="lgcp"; version="1.3-15"; sha256="16a8bg40pravg7jxnqxp74rnncgwxy5jki27038497ask5yxzpdd"; depends=[fields iterators maptools Matrix ncdf4 RandomFields raster rgeos rpanel sp spatstat]; }; + lgtdl = derive2 { name="lgtdl"; version="1.1.4"; sha256="0y519hgrm2ynbhbs61vi8gkhwqgn69wpnd391wpgf4yrg2lx064b"; depends=[]; }; + lhs = derive2 { name="lhs"; version="0.14"; sha256="1qnr3s9511nq3xqdbngllmw3mvnnpblma5dafyghxlpvydc2l481"; depends=[]; }; libamtrack = derive2 { name="libamtrack"; version="0.6.3"; sha256="0pdwrz19q1yls0rgr4579f31j86awizx3j31h7vdh6y70ngpmb82"; depends=[]; }; - lifecontingencies = derive2 { name="lifecontingencies"; version="1.1.10"; sha256="1j1m5s8bsxl21rjy3jy12babd69kkd1c4awpi14wh09w45d3pvfr"; depends=[markovchain Rcpp]; }; + libcoin = derive2 { name="libcoin"; version="0.9-1"; sha256="0whxgylcrhm03yln8k11cxr3bcjkvhyqhgj0yc8wc4avaq6gl1dh"; depends=[mvtnorm]; }; + libsoc = derive2 { name="libsoc"; version="0.5"; sha256="0p01mcwnkb4g3dq0mx1gbwfbznp4b2dmhs8k8wmnh7wll16v9i6z"; depends=[]; }; + lidR = derive2 { name="lidR"; version="1.1.0"; sha256="04skxqjcq27fbkfc274575r215iv13xhjyzdwlr2hf6ksnn54jdf"; depends=[data_table lazyeval magrittr RANN raster Rcpp rgeos rgl rlas]; }; + lifecontingencies = derive2 { name="lifecontingencies"; version="1.2.3"; sha256="1gkvrzcmcic3rzbcfp5lif4zfc94bhfm36i3ajzaczwjhg2dwivs"; depends=[markovchain Rcpp]; }; + lifecourse = derive2 { name="lifecourse"; version="2.0"; sha256="1m8ihqvzhzpq2m2pdvh37bpq9pdbj23r3y0jkl3q8farh3qj473d"; depends=[TraMineR]; }; lift = derive2 { name="lift"; version="0.0.2"; sha256="0ynsyl6lw7z7bvwzk2idgxzzqji5ffnnc3bll9h4gwdw666g7fln"; depends=[]; }; - liftr = derive2 { name="liftr"; version="0.3"; sha256="0piy10syyli14xd71ynlxxsdfhs7i531kymvw2psz0ridv7ang1j"; depends=[knitr rmarkdown stringr yaml]; }; - lightsout = derive2 { name="lightsout"; version="0.2.1"; sha256="12249kjfmrybwq7s3biai0f2pcv30556a4w9q63drm4aqpc6v5q8"; depends=[magrittr shiny shinyjs]; }; - likeLTD = derive2 { name="likeLTD"; version="6.0.4"; sha256="1czwcr5d8i1xwll92m4302fjm76w6ss9b0ndpjm5vwk1492h285a"; depends=[DEoptim gdata ggplot2 gtools rtf]; }; + liftLRD = derive2 { name="liftLRD"; version="1.0-5"; sha256="0v0aczf9s3vr9kk7n6z9spwc82hf418v9vjiyfri3npn3ib112b7"; depends=[adlift nlt]; }; + liftr = derive2 { name="liftr"; version="0.4"; sha256="10r29z9p83cmvgwrcwbb3ws8ayvjmvqgvx83ppa9p01rgw6n9jwq"; depends=[knitr rmarkdown stringr yaml]; }; + lightsout = derive2 { name="lightsout"; version="0.3"; sha256="0ypniqf9wk35dd9j57wd7gxchr5hy25fwhmkndz2z8b9ajhm3c9b"; depends=[magrittr shiny shinyjs]; }; + likeLTD = derive2 { name="likeLTD"; version="6.1.1"; sha256="0yf0lnzarl6hgs21l6acjcz40dsw269pagxkfcl5fqpkb53rnqgq"; depends=[DEoptim gdata ggplot2 gtools rtf]; }; likelihood = derive2 { name="likelihood"; version="1.7"; sha256="0q8lvwzlniijyzsznb3ys4mv1cqy7ibj9nc3wgyb4rf8676k4f8v"; depends=[nlme]; }; - likelihoodAsy = derive2 { name="likelihoodAsy"; version="0.40"; sha256="1zgqs9pcsb45s414kqbhvsb9cxag0imla682981lqvrbli13p2kg"; depends=[alabama cond nleqslv pracma Rsolnp]; }; - likert = derive2 { name="likert"; version="1.3.3"; sha256="0vdm0ggki9lyxm7b477v1ja23d73p7iys3as98vjwymgkakrbb8b"; depends=[ggplot2 gridExtra plyr psych reshape2 xtable]; }; - limSolve = derive2 { name="limSolve"; version="1.5.5.1"; sha256="0anrbhw07mird9fj96x1p0gynjnjcj07gpwlq0ffjlqq2qmkzgqs"; depends=[lpSolve MASS quadprog]; }; + likelihoodAsy = derive2 { name="likelihoodAsy"; version="0.45"; sha256="0sl0q6w49l89i6s80scsr5lrr8jgdd0788i4b87w985zaxjqrh03"; depends=[alabama cond nleqslv pracma Rsolnp]; }; + likert = derive2 { name="likert"; version="1.3.5"; sha256="0c4irxs7pp1z8nj4s8cq23daw4h94n3h7x4f6q1d85614qcl9l3p"; depends=[ggplot2 gridExtra plyr psych reshape2 xtable]; }; + limSolve = derive2 { name="limSolve"; version="1.5.5.2"; sha256="01vc6as0mr6fmz8vzlnziv4sy302amwwvn7nsnmfrhslqyps4vx1"; depends=[lpSolve MASS quadprog]; }; limitplot = derive2 { name="limitplot"; version="1.2"; sha256="0wj1xalm80fa5pvjwh2zf5hpvxa3r1hnkh2z9z285wkbrcl0qfl2"; depends=[]; }; linERR = derive2 { name="linERR"; version="1.0"; sha256="1mhiyqfpwagg161ncp5ndd22hlh12qzr360nms13rgyd8a077cq7"; depends=[survival]; }; linLIR = derive2 { name="linLIR"; version="1.1"; sha256="1v5bwki5j567x2kndfd5nli5i093a33in31025h9hsvkbal1dxgp"; depends=[]; }; linbin = derive2 { name="linbin"; version="0.1.1"; sha256="0i99j7n1hxvnm2605b2xr4mxpib64abr10wp03nxii16nssvv66m"; depends=[]; }; + linear_tools = derive2 { name="linear.tools"; version="1.3.0"; sha256="14lp3gifzbid82lkr7rdqajz2abp8m7y8irpwx6s8w66djjfckda"; depends=[ggplot2 magrittr plyr pryr scales stringr]; }; lineup = derive2 { name="lineup"; version="0.37-6"; sha256="1xyvw00lwnx7j3cgk4aw69lam6ndjxx3wj14h4jpx1xn8l3w7652"; depends=[class qtl]; }; - linkR = derive2 { name="linkR"; version="1.0.1"; sha256="0ayscl0i4flh31l5j8730h5lpqi30p8f2l3nvbd3i2mhp54gpcdx"; depends=[svgViewR]; }; + lingtypology = derive2 { name="lingtypology"; version="1.0.1"; sha256="1k56x651c84sc60fmz1yf0x5436dnh6v3vxh8yq9hk5qpmkgz8h9"; depends=[leaflet magrittr rowr stringdist]; }; + link2GI = derive2 { name="link2GI"; version="0.1-0"; sha256="1i16yf387izv8vn0z8f7wgk02hld83lhfb5c263mn1v3q5zj9kki"; depends=[gdalUtils raster rgdal rgrass7 sf sp]; }; + linkR = derive2 { name="linkR"; version="1.1.1"; sha256="1748r7s5g0gvsmghrb7l5lmdbzb9f4vkbgj51v308jr64r1k7l93"; depends=[svgViewR]; }; linkcomm = derive2 { name="linkcomm"; version="1.0-11"; sha256="1w5sfmzvrk30fr161pk0cy5nj8kasqm6hqgyafq6r280b5s272cb"; depends=[dynamicTreeCut igraph RColorBrewer]; }; linkim = derive2 { name="linkim"; version="0.1"; sha256="0yvyid9x59ias8h436a202hd2kmqvn8k1zcrgja2l4z2pzcvfn91"; depends=[]; }; linprog = derive2 { name="linprog"; version="0.9-2"; sha256="1ki14an0pmhs2mnmfjjvdzd76pshiyvi659zf7hqvqwj0viv4dw9"; depends=[lpSolve]; }; - lint = derive2 { name="lint"; version="0.3"; sha256="0lkrn5nsizyixhdp5njxgrgwmygwr663jxv5k9a22a63x1qbwpiq"; depends=[dostats foreach harvestr plyr stringr]; }; lintools = derive2 { name="lintools"; version="0.1.1.1"; sha256="1rsya48abvr5zijd10bh5g03hjviyack2gh0waawqhv29lhiy9f1"; depends=[]; }; - lintr = derive2 { name="lintr"; version="0.3.3"; sha256="04h05y678xx65sd3cx23yzkdmghk47ikg52w4ii110jjq0s53p9d"; depends=[codetools crayon digest httr igraph jsonlite knitr rex rstudioapi stringdist testthat]; }; + lintr = derive2 { name="lintr"; version="1.0.0"; sha256="0d03lwr96pdvkdxgjlrzj591dkaxm2rbdk2n3jgr1k428v6jkzy0"; depends=[codetools crayon digest httr igraph jsonlite knitr rex rstudioapi stringdist testthat]; }; + liqueueR = derive2 { name="liqueueR"; version="0.0.1"; sha256="0rpjib0dz39la63gy9bw9gmdfq2fcx40y4y4wcb6ky41qcjdp1nd"; depends=[itertools]; }; lira = derive2 { name="lira"; version="1.2.0"; sha256="1n4vjq5v0qj26bq56w5vchwdv10ysc94aizblwm1wl9ss8lpsc0a"; depends=[coda rjags]; }; liso = derive2 { name="liso"; version="0.2"; sha256="072l7ac1fbkh8baiiwx2psiv1sd7h8ggmgk5xkzml069ihhldj5i"; depends=[Iso MASS]; }; lisp = derive2 { name="lisp"; version="0.1"; sha256="025sq46277q9i21189cbmx5dnrh5wfshc5k6la1wjilhr1iqf6nj"; depends=[]; }; lisrelToR = derive2 { name="lisrelToR"; version="0.1.4"; sha256="0zicq0z3hhixan1p1apybnf3v5s6v6ysll4pcz8ivygwr2swv3p5"; depends=[]; }; - list = derive2 { name="list"; version="8.0"; sha256="09qpcsygs2clbgd42v6klgh1vjhv64s56ixxqlcpg9v7xqnms56j"; depends=[coda corpcor gamlss_dist magic MASS mvtnorm quadprog sandwich VGAM]; }; - listWithDefaults = derive2 { name="listWithDefaults"; version="1.0.0"; sha256="1l7q5v7nf2z1six66lvqflnc77q0f7n1acdbmla695myv246aj6d"; depends=[assertthat]; }; + list = derive2 { name="list"; version="8.3"; sha256="1wffh7xmhdf4hqbpz4ij0759zk0y0zsm160kzfcr2n8s9wdgm5gj"; depends=[coda corpcor gamlss_dist magic MASS mvtnorm quadprog sandwich VGAM]; }; + listWithDefaults = derive2 { name="listWithDefaults"; version="1.1.0"; sha256="1fbip2rs82l4s85ag147clkwb5spwr07dyh2c7n6vw1i4h1w0v5x"; depends=[assertthat]; }; + listdtr = derive2 { name="listdtr"; version="1.0"; sha256="08drps03nndpdxswyv8bjm1bcckjav5pjj7fdx3dzyn0v4dfy619"; depends=[ggplot2]; }; listenv = derive2 { name="listenv"; version="0.6.0"; sha256="0kyq90mf7wv9qgw3s81iv0b8ah0ncc5kv15r7fv6ggdq4f0z0dx7"; depends=[]; }; - littler = derive2 { name="littler"; version="0.3.0"; sha256="1n3kmfl4kazab0yxwgdri24179w6pbkx96pgn8j3alj6ixrn5wdy"; depends=[]; }; + listless = derive2 { name="listless"; version="0.0-2"; sha256="1gr6l4vih7j28kg2mj1xj2yhlpwjc4p894vsxri25vq0r9kgcdym"; depends=[magrittr tidyr]; }; + listviewer = derive2 { name="listviewer"; version="1.4.0"; sha256="1273vk8pk393ciwahvpmdh9z4xdlhw3a7mlm7jsqxqnsrc6jrz3x"; depends=[htmltools htmlwidgets shiny]; }; + liteq = derive2 { name="liteq"; version="1.0.0"; sha256="1r3rbn0a5nnwrhfdygn1hlvv0n3nd1ayddvkpdv5ibsp5fl5vjhy"; depends=[assertthat DBI rappdirs RSQLite]; }; + littler = derive2 { name="littler"; version="0.3.2"; sha256="0anwlxyj82xgrccb3pf6glrkqbkw1871hj4b1qrkmd5ss2f3xq9j"; depends=[]; }; livechatR = derive2 { name="livechatR"; version="0.1.0"; sha256="1k0z6q3s9iw962m1lwlx45p95flzl5jg1xh6ng426v9jh1yyrbb2"; depends=[data_table dplyr jsonlite magrittr purrr]; }; + ljr = derive2 { name="ljr"; version="1.4-0"; sha256="0jby94ml8w6pwnxbmv6qfjww2myvvnn9vrmlqpdh71dhgp3z35py"; depends=[]; }; llama = derive2 { name="llama"; version="0.9.1"; sha256="1cvm58kivjw77a2fy1jwsajzl1d0i3i123p6glpwdlqn6rlharck"; depends=[BBmisc checkmate ggplot2 mlr parallelMap plyr rJava]; }; lle = derive2 { name="lle"; version="1.1"; sha256="09wq7mzw48czp5k0b4ij399cflc1jz876fqv0mfvlrydc9igmjhk"; depends=[MASS scatterplot3d snowfall]; }; lllcrc = derive2 { name="lllcrc"; version="1.2"; sha256="06n1fcd3g3z5rl2cyx8jhyscq9fb52mmh0cxg81cnbmai3sliccb"; depends=[combinat data_table plyr VGAM]; }; lm_beta = derive2 { name="lm.beta"; version="1.5-1"; sha256="0p224y9pm72brbcq8y1agkcwc82j7clsnszqzl1qsc0gw0bx9id3"; depends=[]; }; lm_br = derive2 { name="lm.br"; version="2.8"; sha256="019j0ypl4cdnl29r9x17m62jnpp1p174zmy3zdy8bvp52kz4008r"; depends=[Rcpp]; }; - lmSupport = derive2 { name="lmSupport"; version="2.9.2"; sha256="0mdl5ih7zzxynawxx4prh08nq451x74bfw4ga7cygl2ahi6vqq50"; depends=[AICcmodavg car gvlma lme4 psych]; }; - lme4 = derive2 { name="lme4"; version="1.1-11"; sha256="1ji3nkw46ryr8gsam5fbwfbc0pf9s224yfzrs11yb91i89jza93r"; depends=[lattice MASS Matrix minqa nlme nloptr Rcpp RcppEigen]; }; + lmPerm = derive2 { name="lmPerm"; version="2.1.0"; sha256="1ss2hcfxqvfq4n6hypv7jp0n0apby9payxzaswaysr5368lkidn3"; depends=[]; }; + lmSupport = derive2 { name="lmSupport"; version="2.9.8"; sha256="1g96540krrvycy7m3avhwazkmnyngk9lrjggny4wxhzn49i8p4ga"; depends=[AICcmodavg car gplots gvlma lme4 pbkrtest psych pwr]; }; + lme4 = derive2 { name="lme4"; version="1.1-12"; sha256="0j60l5kgx1wvw2wm3jwfqwi63hammaq8gfcxzwa4h552likvaxi9"; depends=[lattice MASS Matrix minqa nlme nloptr Rcpp RcppEigen]; }; lmeNB = derive2 { name="lmeNB"; version="1.3"; sha256="03khn9wgjbz34sx0p5b9wd3mhbknw8qyvyd5pvllmjipnir63d3q"; depends=[lmeNBBayes numDeriv statmod]; }; lmeNBBayes = derive2 { name="lmeNBBayes"; version="1.3.1"; sha256="13shfsh9x6151xy8gicb25sind90imrwclnmfj96b76p5dvhzabm"; depends=[]; }; lmeSplines = derive2 { name="lmeSplines"; version="1.1-10"; sha256="0fy6hspk7rqqkzv0czvvs8r4ishvs7zsf4ykvia65nj26w7yhyia"; depends=[nlme]; }; lmeVarComp = derive2 { name="lmeVarComp"; version="1.0"; sha256="17zrl33h4lcd8lpdv3d12h5afj8nxr2lyw6699zq4fds2chbq66l"; depends=[]; }; lmec = derive2 { name="lmec"; version="1.0"; sha256="09shj01h2dl5lh7ch0wayr7qyhlmk0prv3p1vfgy91sn0wpbqlxr"; depends=[mvtnorm]; }; - lmenssp = derive2 { name="lmenssp"; version="1.1"; sha256="1s0v5fmzmiq271d3x8l83ni7rl7ikw40mqwhhd2xh21a3nrcdw6l"; depends=[geoR MASS mvtnorm nlme]; }; - lmerTest = derive2 { name="lmerTest"; version="2.0-30"; sha256="16kxk8wiad5w5x81jlr2v6422b5wyi2ay4bkl8s2vq3szrbxl3k9"; depends=[ggplot2 Hmisc lme4 MASS Matrix plyr]; }; + lmem_gwaser = derive2 { name="lmem.gwaser"; version="0.1.0"; sha256="0i315plqq1c8d7nvzk7jj9b3n4pgy27673pgdbii4c5bccwm12vn"; depends=[fdrtool genetics lattice LDheatmap lme4 pastecs qtl stringr]; }; + lmem_qtler = derive2 { name="lmem.qtler"; version="0.1.1"; sha256="0qbllj66y294n1m8dsyrnwyvzscbzg8mb2dmjyghcrfaz925vkin"; depends=[lattice lme4 pastecs qtl stringr]; }; + lmenssp = derive2 { name="lmenssp"; version="1.2"; sha256="1vc90x3y1vzmzblc15kqar3nd3c3p8p9nvmpk0ib52n0qv5pr6wz"; depends=[geoR MASS mvtnorm nlme]; }; + lmerTest = derive2 { name="lmerTest"; version="2.0-33"; sha256="1r4bwxq36hn41hwjph2nrn4jhh0y2kwc746374ng5jd480gkgl8m"; depends=[ggplot2 Hmisc lme4 MASS Matrix plyr]; }; + lmeresampler = derive2 { name="lmeresampler"; version="0.1.0"; sha256="00v3qg5vyjjb0pcbrknzxy80kkwsypkhwkv3nsck5rscaf86y3aq"; depends=[boot dplyr Matrix nlmeU plyr RLRsim]; }; lmf = derive2 { name="lmf"; version="1.2"; sha256="1xqlqmjl7wf5b2s2a1k1ara21v74b3wvwl4mhbj9dkdb0jcrgfva"; depends=[]; }; - lmfor = derive2 { name="lmfor"; version="1.1"; sha256="0bbcgpcx0xjla128w80xlxp6i6hnrk4wjwqih66zvyjaf5sz7wx9"; depends=[MASS nlme]; }; + lmfor = derive2 { name="lmfor"; version="1.2"; sha256="1lad1sfrf6lsksix4nn2c2dc5fx0rfm4kdhvbmqf9dc55f98rla8"; depends=[MASS nlme]; }; lmm = derive2 { name="lmm"; version="1.0"; sha256="0x5ikb1db99dsn476mf4253dlznlxa1cwnykg1nwnm2vy5qym2fq"; depends=[]; }; lmmlasso = derive2 { name="lmmlasso"; version="0.1-2"; sha256="1mvd38k9npyc05a2x7z0908qz9x4srqgzq9yjyyggplqfrl4dgsz"; depends=[emulator miscTools penalized]; }; lmmot = derive2 { name="lmmot"; version="0.1.3"; sha256="1wpqcyscbqv9l8kl4lg5xg6cs3vc496jwpyj5y4iqmks88hgi6il"; depends=[MASS maxLik]; }; @@ -5201,87 +6495,96 @@ in with self; { lmodel2 = derive2 { name="lmodel2"; version="1.7-2"; sha256="0dyzxflr82k7ns824zlycj502jx3qmgrck125im2k2da34ir3m3q"; depends=[]; }; lmom = derive2 { name="lmom"; version="2.5"; sha256="0s2x8k6p71hxdqggy8ajk7p9p040b9xr3lm49g31z3kcsmzvk23q"; depends=[]; }; lmomRFA = derive2 { name="lmomRFA"; version="3.0-1"; sha256="0lf8n6bhdv3px6p60smghvmwsbgawvjrmgy2dfhs517n67pxg30i"; depends=[lmom]; }; - lmomco = derive2 { name="lmomco"; version="2.2.2"; sha256="1ha77bvd7gb6150mkah62v2vgazifj8as19ry4ivm0kdzlbxc0jz"; depends=[Lmoments MASS]; }; - lmtest = derive2 { name="lmtest"; version="0.9-34"; sha256="0bhdfwrrwjkmlw0wwx7rh6lhdjp68p7db5zfzginnv3dxmksvvl6"; depends=[zoo]; }; + lmomco = derive2 { name="lmomco"; version="2.2.5"; sha256="0xk114vc9pz0f2nfzfyh43idz0hrn0w4g1j3kidlqhnd96g576vs"; depends=[goftest Lmoments MASS]; }; + lmridge = derive2 { name="lmridge"; version="1.0"; sha256="07zchmdcyz8agrs9q2ydcgicz3sxg893vv4rsynlpgyk2z5xnnjf"; depends=[]; }; + lmtest = derive2 { name="lmtest"; version="0.9-35"; sha256="107br1l7p52wxvazs031f4h5ryply97qywg9dzrkw4ydnvqq4j9g"; depends=[zoo]; }; + lmvar = derive2 { name="lmvar"; version="1.0.0"; sha256="03j7ix7f0n4jlrvffs37mrjvl1bbz2q0cqc1qaqpk1davmxc1vfi"; depends=[Matrix matrixcalc nleqslv]; }; loa = derive2 { name="loa"; version="0.2.38"; sha256="1k57n3j8nh0frgabhb5gh0scmgp5gzn2zc9l206mklbw06jkdp96"; depends=[lattice MASS mgcv png RColorBrewer RgoogleMaps]; }; localdepth = derive2 { name="localdepth"; version="0.5-7"; sha256="0h0y74xnhdqa7y51ljmpz7ayznppvy2ll06wfds6200lb9cxgr7k"; depends=[circular]; }; - localgauss = derive2 { name="localgauss"; version="0.35"; sha256="1b8zx2kv1yyazw1sq0c91q11mk3pc7ig2q93qm6lv75nlakyp7da"; depends=[foreach ggplot2 MASS matrixStats]; }; + localgauss = derive2 { name="localgauss"; version="0.40"; sha256="0y0pcg2i7lr4wipxawn06hy0q11znhcn2ah6rqwnlyy8pab70pyq"; depends=[foreach MASS matrixStats]; }; localsolver = derive2 { name="localsolver"; version="2.3"; sha256="1d18rihzqf1f5j9agfp8jysll7lqk1ai23hkdqkn6wwxj442llv4"; depends=[]; }; locfdr = derive2 { name="locfdr"; version="1.1-8"; sha256="1falkbp2xz07am8jlhwlvyqvxnli4nwl188kd0g58vdfjcjy3mj2"; depends=[]; }; locfit = derive2 { name="locfit"; version="1.5-9.1"; sha256="0lafrmq1q7x026m92h01hc9cjjiximqqi3v1g2hw7ai9vf7i897m"; depends=[lattice]; }; - locits = derive2 { name="locits"; version="1.4"; sha256="1q9vsf5h4n7r4gy1dwdhfyq3n0rn33akb3nx6yzinncj4w4cqq0h"; depends=[igraph wavethresh]; }; + locits = derive2 { name="locits"; version="1.7.3"; sha256="0sjnwqiqwzdkglvbdxbkg17gjp0vyqvywsy0qq7adxj5hh0yah05"; depends=[igraph wavethresh]; }; locpol = derive2 { name="locpol"; version="0.6-0"; sha256="1zpdh3g7yx3rcn3rhlc3dm19c4b9kx2k8wy8vkwh744a1kysvdga"; depends=[]; }; lodGWAS = derive2 { name="lodGWAS"; version="1.0-7"; sha256="0g5b44d3wb5hnx5l2n76myb1pc9ml3a052n1a4gvgqapa5as35s2"; depends=[rms survival]; }; + loe = derive2 { name="loe"; version="1.1"; sha256="1n16pgfxg9vcn729xxjbbvavg2ywbdcch9v2ph8nv3z7psc0q46c"; depends=[MASS]; }; log4r = derive2 { name="log4r"; version="0.2"; sha256="07q8m7z2sxm6n25a62invf76qakxdsijfh3272spc8xrmdmyw6rj"; depends=[]; }; - logbin = derive2 { name="logbin"; version="1.2"; sha256="1jfkg5rx51hm2skwwafqiw6ajdijdm0cniral3j5flidinsbsbcm"; depends=[glm2]; }; + logbin = derive2 { name="logbin"; version="2.0.1"; sha256="13fxq3lslsmial52ih80ziagbkm00a8681dnnn3s8kykqg1m8v7f"; depends=[glm2 turboEM]; }; logconPH = derive2 { name="logconPH"; version="1.5"; sha256="05fkibgh5nzs8c4f39kzg4zyh2dfhg1k69hlx7l8p442snajsg92"; depends=[]; }; logconcens = derive2 { name="logconcens"; version="0.16-4"; sha256="11bk03kjlb747g54axmb0nayz226g41xvanbw79aij76vjbglv7y"; depends=[]; }; - logcondens = derive2 { name="logcondens"; version="2.1.4"; sha256="0y1x0bvalrhrl329l9a0mssc8kc060ml2hgz18qyw3chd24x3dmz"; depends=[ks]; }; + logcondens = derive2 { name="logcondens"; version="2.1.5"; sha256="1sq27klnphp74hq0l0460m9bb7lrl06mpgkg4qq8iciy3yy1mrkj"; depends=[ks]; }; logcondens_mode = derive2 { name="logcondens.mode"; version="1.0.1"; sha256="1i2c2prk5j863p3a3q3xnsv684igfi5czz3dib7zfjldpf0qyaq7"; depends=[distr logcondens]; }; logcondiscr = derive2 { name="logcondiscr"; version="1.0.6"; sha256="08wwxsrpflwbzgs6vb3r0f52hscxz1f4q0xabr1yqns06gir1kxd"; depends=[cobs Matrix mvtnorm]; }; logging = derive2 { name="logging"; version="0.7-103"; sha256="1sp7q217awizb6l8c9p5dix6skpq8j7w8i088x4mm0fc0qr1ba5c"; depends=[]; }; - logistf = derive2 { name="logistf"; version="1.21"; sha256="0cwbmd0mvj4wywpx7p4lhs70nhab7bfl6fzz2c4snn3ma6sy7x8c"; depends=[mgcv mice]; }; + logistf = derive2 { name="logistf"; version="1.22"; sha256="0npwqbl8rfvn6w2y0qpkckj44mvjjccj0cn9axp2wcs03cmz0rp8"; depends=[mgcv mice]; }; logisticPCA = derive2 { name="logisticPCA"; version="0.2"; sha256="07ikyn127ld0fjdw7x911wrswqwqpw4lbcz0iffvh6jfjkgyk341"; depends=[ggplot2]; }; logitchoice = derive2 { name="logitchoice"; version="0.9.4"; sha256="1vkw7cwp7nwrsj9ifn4gz21zbw9da5rph9lr3w466zxkzdkbldqj"; depends=[]; }; - logitnorm = derive2 { name="logitnorm"; version="0.8.29"; sha256="0wbdxh3n44nzb6c0ahyd8gndfql1y56fns2bkmzqi3nxy9blhx18"; depends=[]; }; + logitnorm = derive2 { name="logitnorm"; version="0.8.33"; sha256="1arsgc57vr77m9ygy0rbqkayj587k9k5k8nrr6k30v63qapc2irv"; depends=[]; }; loglognorm = derive2 { name="loglognorm"; version="1.0.1"; sha256="0rhx769a5nmidpbpngs2vglsbkpgw9badz3kj3jfmpj873jfnbln"; depends=[]; }; logmult = derive2 { name="logmult"; version="0.6.3"; sha256="05vxvi9zf2araxfng7gibak9g8m6vwmp7aclddpd814lxzmsmf8a"; depends=[gnm qvcalc]; }; logspline = derive2 { name="logspline"; version="2.1.9"; sha256="1kd7ricaxbcjl6d9hx7bb5mlkr7x2h7gc8vrmfvlzxppbcghb6vw"; depends=[]; }; - lokern = derive2 { name="lokern"; version="1.1-6"; sha256="0iixxs23zsb0qadppcwmwf6vbxcjnm8zmwyz1xkkmhrpp06sa3jw"; depends=[sfsmisc]; }; + lokern = derive2 { name="lokern"; version="1.1-8"; sha256="1dlyvgd2i4dckd8ic3x75r4sikwalch9b2f13xp5rhkzmfzbprxq"; depends=[sfsmisc]; }; lomb = derive2 { name="lomb"; version="1.0"; sha256="06lbk7s1ilqx6xsgj628wzdwmnvbs0p03hdpx8665fhddcxh3ryy"; depends=[]; }; - longCatEDA = derive2 { name="longCatEDA"; version="0.17"; sha256="1yb0117ycj4079590mrx3lg9m5k7xd1dhb779r3rmnww94pmvja9"; depends=[]; }; + longCatEDA = derive2 { name="longCatEDA"; version="0.30"; sha256="1xj1lfwnsl864c0wycpwg8ibns6447l5988132p79a2rpd30rw3r"; depends=[]; }; longclust = derive2 { name="longclust"; version="1.2"; sha256="1m270fyvfz0w19p9xdv7ihy19nhrhjq2akymbp774073crznmmw0"; depends=[]; }; longitudinal = derive2 { name="longitudinal"; version="1.1.12"; sha256="1d83ws28nxi3kw5lgd5n5y7865djq7ky72fw3ddi1fkkhg1r9y6l"; depends=[corpcor]; }; longitudinalData = derive2 { name="longitudinalData"; version="2.4.1"; sha256="0lnvcfgj721bawl1ciz0jw83mfsnzkhg6jn824vr3qdm4rbib2vd"; depends=[class clv misc3d rgl]; }; longmemo = derive2 { name="longmemo"; version="1.0-0"; sha256="1jnck5nfwxywj74awl4s9i9jn431655mmi85g0nfbg4y71aprzdc"; depends=[]; }; - longpower = derive2 { name="longpower"; version="1.0-11"; sha256="1l1icy653d67wlvigcya8glhqh2746cr1vh1khx36qjhfjz6wgyf"; depends=[lme4 Matrix nlme]; }; - longurl = derive2 { name="longurl"; version="0.1.1"; sha256="06xyxn641nsw3zl2mllsvm1r4g82ddnc3vvscp6bdw8l7a13w4a5"; depends=[dplyr httr pbapply]; }; - loo = derive2 { name="loo"; version="0.1.5"; sha256="0d5lnc8a9939g3mvh28ymvsabgfkq9fqljskvqj5v9rb4ps1b9xd"; depends=[matrixStats]; }; + longpower = derive2 { name="longpower"; version="1.0-16"; sha256="0hbv43y0fgbv1qiczy4kibqc7pk7whrz4kyxshg8730y8g9wyxdi"; depends=[lme4 nlme]; }; + longurl = derive2 { name="longurl"; version="0.3.0"; sha256="0ysa70zlkk3ybddj3yd3vbhjnkjbrisiz5a2hgbjx10p33m1r3am"; depends=[dplyr httr purrr]; }; + loo = derive2 { name="loo"; version="1.0.0"; sha256="1c4knrcfc3r2yg9623lryfbndrv3fbz2ksascmi5wgik3fz44w01"; depends=[matrixStats]; }; lookupTable = derive2 { name="lookupTable"; version="0.1"; sha256="0ipy0glrad2gfr75kd8p3999xnfw4pgpbg6p064qa8ljqg0n1s49"; depends=[data_table dplyr]; }; loop = derive2 { name="loop"; version="1.1"; sha256="1gr257fm92rfh1sdhsb4hy0fzwjkwvwm3v85302gzn02f86qr5dm"; depends=[MASS]; }; loopr = derive2 { name="loopr"; version="1.0.1"; sha256="1qzfjv15ymk8mnvb556g2bfk64jpl0qcvh4bm3wihplr1whrwq6y"; depends=[dplyr lazyeval magrittr plyr R6]; }; lordif = derive2 { name="lordif"; version="0.3-3"; sha256="1yby9fvzdi1dzvzp6d6h144k1p9nfacd8l5bd66dmhnc8sp2nlx5"; depends=[mirt rms]; }; lorec = derive2 { name="lorec"; version="0.6.1"; sha256="0mgypd8awixh1lzbh5559br4k7vi3pfmwniqhgh68wc06sc6bn65"; depends=[]; }; + lowmemtkmeans = derive2 { name="lowmemtkmeans"; version="0.1.2"; sha256="08zhdw48rzw47yzhg4s37bkliyngxs46cyb57dvng1s3m0w0dhvi"; depends=[Rcpp RcppArmadillo]; }; lpSolve = derive2 { name="lpSolve"; version="5.6.13"; sha256="13a9ry8xf5j1f2j6imqrxdgxqz3nqp9sj9b4ivyx9sid459irm6m"; depends=[]; }; lpSolveAPI = derive2 { name="lpSolveAPI"; version="5.5.2.0-17"; sha256="1gfxnjkhhyybhyg29qdrdqzwq569b6pgwjgacmw3q7aldc724cyz"; depends=[]; }; lpbrim = derive2 { name="lpbrim"; version="1.0.0"; sha256="1cbkzl23vgs9hf83ggkcnkmxvvj8867k5b9vhfdrznpqyqv1f2gp"; depends=[Matrix plyr RColorBrewer]; }; lpc = derive2 { name="lpc"; version="1.0.2"; sha256="1r6ynkhqjic1m7fqrqsp7f8rpxqih5idn4j96fqrdj8nj01znv29"; depends=[]; }; lpint = derive2 { name="lpint"; version="2.0"; sha256="0p1np8wlfbax0c7ysc5fs9dai8s00h1v0gan89dbd6bx06307w2r"; depends=[]; }; + lplyr = derive2 { name="lplyr"; version="0.1.6"; sha256="1a7wry5v78z4aij7ii64340ycx30wqbm3x2wllka79gkll1fn78h"; depends=[bazar dplyr lazyeval magrittr]; }; lpme = derive2 { name="lpme"; version="1.0.1"; sha256="0f0xphlxl0ma3s2miadl74cb1l20cikqgk3nc1dg5ml05cqzhyxr"; depends=[Rcpp RcppArmadillo]; }; lpmodeler = derive2 { name="lpmodeler"; version="0.2-1"; sha256="17k67l03dkjx61p4hwswghjm6awk0zx173x9xafxrfd8jrgsf6kf"; depends=[slam]; }; lpridge = derive2 { name="lpridge"; version="1.0-7"; sha256="0nkl70fwzra308bzlhjfpkxr8hpd8v1xdnah7nscxa10qlisgr2k"; depends=[]; }; lqa = derive2 { name="lqa"; version="1.0-3"; sha256="141r2cd9kybi6n9jbdsvhza8jdxxqch4z3qizvpazjy8qifng29q"; depends=[]; }; lqmm = derive2 { name="lqmm"; version="1.5.3"; sha256="1gl609irhxk7qi4x8as2xylc6iybm9jyrnm7dvb92nxl0ksp44v7"; depends=[nlme SparseGrid]; }; - lqr = derive2 { name="lqr"; version="1.1"; sha256="1ljxvq6vbqzb8p6krv0k2d4fjv7y0l7m5dvbzw6rg82zfa66mlhk"; depends=[ghyp spatstat]; }; + lqr = derive2 { name="lqr"; version="1.5"; sha256="1rcs6p8jx86r40ys8qiz5gynkfqyg3lkv7wsv551w9c5m3s1z2gy"; depends=[ghyp spatstat]; }; lrequire = derive2 { name="lrequire"; version="0.1.3"; sha256="03c8h9v2xhlv7bj5jv117a27gaqaly2kdxs9zyihsm9yh9rg3d79"; depends=[]; }; - lrgs = derive2 { name="lrgs"; version="0.4.2"; sha256="04blq49sxc0shny0yfv19az66k8xb8bwdqznqajzr3cbsnpvh5bk"; depends=[mvtnorm]; }; - lrmest = derive2 { name="lrmest"; version="1.0"; sha256="1gdj8pmmzvs1li05pwhad63blhibq45xd1acajxsx06k7k21ajs7"; depends=[MASS]; }; + lrgs = derive2 { name="lrgs"; version="0.5.1"; sha256="1hzcmrvax03bzrljnqskmnnpsw6amnwcfygnls727369h0dbzc4a"; depends=[mvtnorm]; }; + lrmest = derive2 { name="lrmest"; version="3.0"; sha256="1yddkgza672z9y0ipgl92pg9prhmr387zsqf0qbi9k2yzfz2vvs6"; depends=[MASS psych]; }; lsa = derive2 { name="lsa"; version="0.73.1"; sha256="1af8s32hkri1hpngl9skd6s5x6vb8nqzgnkv0s38yvgsja4xm1g5"; depends=[SnowballC]; }; lsbclust = derive2 { name="lsbclust"; version="1.0.4"; sha256="0a0l1vvr4gp1vvqccjicy4qh7l2kwyh7k503yi403d0987zqywcc"; depends=[clue ggplot2 gridExtra plyr Rcpp reshape2]; }; lsdv = derive2 { name="lsdv"; version="1.1"; sha256="0rl1xszr9r8v71j98gjpav30n2ncsci19hjlc9flzs1s20sb1xpr"; depends=[]; }; lsei = derive2 { name="lsei"; version="1.1-1"; sha256="1akvkccf2cq331agcsi24x3cw73cc8vdl7kw3zjyg8q6lmvq78am"; depends=[]; }; - lsgl = derive2 { name="lsgl"; version="1.2.0"; sha256="18dmm6slf0ilikz9hr3j8p554h5w9jaypfdmva7d2s0mhlv6nx5y"; depends=[BH Matrix Rcpp RcppArmadillo RcppProgress sglOptim]; }; + lsgl = derive2 { name="lsgl"; version="1.3.5"; sha256="0afg1n03zl00b0w87j4v8afp1q6h5d8kx8xgciy52dki4yvb1c3r"; depends=[BH Matrix Rcpp RcppArmadillo RcppProgress sglOptim]; }; lshorth = derive2 { name="lshorth"; version="0.1-6"; sha256="0nbjakx0zx4fg09fv26pr9dlrbvb7ybi6swg84m2kwjky8399vvx"; depends=[]; }; - lsl = derive2 { name="lsl"; version="0.5.1"; sha256="0y6lqmjiah33j66hxwxx9b6qx42sv0bqqgic39nkil1zppkk3b4h"; depends=[ggplot2 reshape2]; }; - lsmeans = derive2 { name="lsmeans"; version="2.23"; sha256="0f3i2415nd6s80lcw0cbksz2g360ws6yvvc0c3rw47z95zi599fj"; depends=[coda estimability multcomp mvtnorm nlme plyr xtable]; }; + lsl = derive2 { name="lsl"; version="0.5.5"; sha256="0555za3yqqdbcpxrl6vzj494784xl1wsmwp1apszaqncz2vwc9pg"; depends=[ggplot2 lavaan reshape2]; }; + lsmeans = derive2 { name="lsmeans"; version="2.25"; sha256="0akz77f4fhkarjf3nn4y3nfh1xflxjzj4jxaw4c7l4dhia7pji30"; depends=[coda estimability multcomp mvtnorm nlme plyr xtable]; }; lspls = derive2 { name="lspls"; version="0.2-1"; sha256="1g27fqhnx9db0zrxbhqr76agvxy8a5fx1bfy58j2ni76pki1y4rl"; depends=[pls]; }; lsr = derive2 { name="lsr"; version="0.5"; sha256="0q385a3q19i8462lm9fx2bw779n4n8azra5ydrzw59zilprhn03f"; depends=[]; }; lss = derive2 { name="lss"; version="0.52"; sha256="1fvs8p9rhx81xfn450smnd0i1ym06ar6nwwcpl74a66pfi9a5sbp"; depends=[quantreg]; }; - ltbayes = derive2 { name="ltbayes"; version="0.3"; sha256="1b35bwli08yzgv3idg86wz8fzpx7r5sx0ryr950rdh0n2jdml09q"; depends=[mcmc MHadaptive numDeriv]; }; + ltbayes = derive2 { name="ltbayes"; version="0.4"; sha256="0kv5k56hmc1m7bv5pmmmk46822szsgwqgpwydn0x56az7xn6hjk6"; depends=[mcmc MHadaptive numDeriv]; }; ltm = derive2 { name="ltm"; version="1.0-0"; sha256="1igkgb0jy3mzlnp9s6avhcpplwijz5g3x26a3lavyy3d9fjpmfpa"; depends=[MASS msm polycor]; }; - ltmle = derive2 { name="ltmle"; version="0.9-7"; sha256="18nybicfy7sp4rvnyckd9wgsb4hqsgmwijh2id9d6kyvkcinxaw2"; depends=[Matrix]; }; + ltmle = derive2 { name="ltmle"; version="0.9-9"; sha256="1fnlnj6r1pvisgain1wvv0yb69wckz31lbxyfvw2xxq6c658ifn8"; depends=[Matrix matrixStats speedglm]; }; ltsa = derive2 { name="ltsa"; version="1.4.6"; sha256="10wmw9r00400ng2zlysd8jqgypjclshxj83x32002j2a9cz4f186"; depends=[]; }; ltsbase = derive2 { name="ltsbase"; version="1.0.1"; sha256="16p5ln9ak3h7h0icv5jfi0a3fbw5wdqs3si69sjbn8f5qs2hz7yp"; depends=[MASS robustbase]; }; ltsk = derive2 { name="ltsk"; version="1.0.4"; sha256="1p026ryq31iw7d8mbi4m2q43g5frj47387w8g46j50bcv11hh2zm"; depends=[fields gstat sp]; }; - lubridate = derive2 { name="lubridate"; version="1.5.0"; sha256="12x286z8m4rqwvsf0gkbkyzw2znj560xsxbczfz9qxz7k26jp640"; depends=[stringr]; }; + ltxsparklines = derive2 { name="ltxsparklines"; version="1.1.2"; sha256="1jnygg7wm2768lrrzball8rn8f60xy4nc3a18h4d32jpnbhifj13"; depends=[]; }; + lubridate = derive2 { name="lubridate"; version="1.6.0"; sha256="0ci6rwij9i1inn840m0mlh1nqgh6vm2lada9kdnjpcjp5kyfv1qs"; depends=[stringr]; }; luca = derive2 { name="luca"; version="1.0-5"; sha256="1jiqwibkrgga4ahz0qgpfkvrsxjqc55i2nwnm60xddb8hpb6a6qx"; depends=[genetics survival]; }; - lucid = derive2 { name="lucid"; version="1.3"; sha256="018vp4xibxr7aanffcvhmppsh7vjsjrqqc41iavyasjbamj3hyck"; depends=[nlme]; }; - lucr = derive2 { name="lucr"; version="0.1.1"; sha256="0igh1wfdl67yincqj284h6kkpp1d9vmv1a4ljkd98vlshwfyi74f"; depends=[httr Rcpp]; }; + lucid = derive2 { name="lucid"; version="1.4"; sha256="1kwl9h7ynp8nhny51xskrbgc3060bawxjkdijhsjzss2hbbygwds"; depends=[nlme]; }; + lucr = derive2 { name="lucr"; version="0.2.0"; sha256="0v5g72cl9fg3b3ix34bsmjwwqrnm4ivgcd5mm98c5jd8rrz1xkwq"; depends=[httr Rcpp]; }; + ludic = derive2 { name="ludic"; version="0.1.5"; sha256="03ywna9fd2ypwchwx58ccmlxjdnx7zav7pqxwrc5bh3hrfbsxl13"; depends=[fGarch landpred Matrix Rcpp RcppArmadillo]; }; lulcc = derive2 { name="lulcc"; version="1.0.1"; sha256="1xq4rjsds9vwj4prkjxfcp9sv53ha9pj65ns0frpbh8grvrjwimv"; depends=[lattice raster rasterVis ROCR]; }; - lumendb = derive2 { name="lumendb"; version="0.2.0"; sha256="0j0bcg0nrp6ckd2vr81jqx9k8q6fsnfpi3n1c5nyjasspb746q2i"; depends=[httr]; }; + lumendb = derive2 { name="lumendb"; version="0.2.1"; sha256="0cmbiiixvf6c33vxzcn4q48asinlsplmc5xpj5h84xnysa6zs3xv"; depends=[httr xml2]; }; lunar = derive2 { name="lunar"; version="0.1-04"; sha256="0nkzy6sf40hxkvsnkzmqxk4sfb3nk7ay4rjdnwf2zym30qax74kk"; depends=[]; }; luzlogr = derive2 { name="luzlogr"; version="0.2.0"; sha256="0n0cm94aianwcypa0gwdjvyy3dwbkfv6zi1gq2jn57b41fg20lq5"; depends=[assertthat]; }; lvm4net = derive2 { name="lvm4net"; version="0.2"; sha256="0al0answp3rngq69bl3ch6ylil22wdp1c047yi5gbga853p7db0c"; depends=[ellipse ergm igraph MASS network]; }; + lvnet = derive2 { name="lvnet"; version="0.3"; sha256="17kp1r6dxajql8b7lzr8s6wv1gqvradbxivz5gnnhdkmx290asaz"; depends=[corpcor dplyr glasso lavaan Matrix mvtnorm OpenMx psych qgraph semPlot]; }; + lvplot = derive2 { name="lvplot"; version="0.2.0"; sha256="01sisj2vbx2yb5w9cjzyaf9j46vh4kkw05xccq1f7wmsg69zmj6b"; depends=[ggplot2 RColorBrewer]; }; lxb = derive2 { name="lxb"; version="1.5"; sha256="16x1mvhxqhvibzmv6mlqcmkgic2sha1xagf7r2azmn4z8x1m9w6n"; depends=[]; }; lymphclon = derive2 { name="lymphclon"; version="1.3.0"; sha256="1jns41sk2rx1j3mg06dzy434k30gpfhbkn6s47fmyv1y8701vfl0"; depends=[corpcor expm MASS]; }; m4fe = derive2 { name="m4fe"; version="0.1"; sha256="06lh45591z2lc6lw91vyn066x0m1zwxxfp6nbirp1rz901v843ph"; depends=[]; }; @@ -5292,162 +6595,216 @@ in with self; { mHG = derive2 { name="mHG"; version="1.0"; sha256="18hj9chp9dy6nmi5w0808nivqbyni117darvdpf03kzq5ym8dlm6"; depends=[]; }; mQTL = derive2 { name="mQTL"; version="1.0"; sha256="0k80xvkr0b0mp3bj2s558fjxi2zf4k7ggnw6hsjm8lr84i108dks"; depends=[MASS outliers qtl]; }; mRMRe = derive2 { name="mRMRe"; version="2.0.5"; sha256="1lhpamjy8dbk3lzjj0wj041cg99rw6925i9fq297c93jxq562414"; depends=[igraph survival]; }; - mRm = derive2 { name="mRm"; version="1.1.5"; sha256="0sbpk7z4ij917nw8wyvnm87iav95ybqrzvmsjy3r8nyq55bjzyn7"; depends=[]; }; - maGUI = derive2 { name="maGUI"; version="1.0"; sha256="0vlaxdq2fw9bpz4wd4ir4gy6pas0hp01xlkbnvwrv297zzhndrr6"; depends=[affy annotate beadarray Biobase BiocInstaller Biostrings convert genefilter GEOmetadb GEOquery globaltest GOstats graph gWidgets gWidgetsRGtk2 impute limma lumi marray oligo pdInfoBuilder RBGL Rgraphviz RGtk2 RSQLite simpleaffy ssize WGCNA]; }; + mRm = derive2 { name="mRm"; version="1.1.6"; sha256="1d897c5xflbkkj25hw15rd62nggv000cv2j481x0lhdgmgldjhrh"; depends=[]; }; + maGUI = derive2 { name="maGUI"; version="2.1"; sha256="16q6hiadqwwm7viz29kn420fi5ca5hx7azgrz0vsvv3bnr0y7aq5"; depends=[affy amap annotate beadarray Biobase BiocInstaller Biostrings Category convert genefilter GEOmetadb GEOquery globaltest GO_db GOstats graph gWidgets gWidgetsRGtk2 impute KEGGgraph KEGGREST limma lumi marray oligo pdInfoBuilder RBGL Rgraphviz RGtk2 RSQLite simpleaffy ssize WGCNA]; }; maRketSim = derive2 { name="maRketSim"; version="0.9.2"; sha256="1cq17zjwyf4i5lcqgxqkw805s4mr6qp89blgpmpxy8gdrbfj93m4"; depends=[]; }; - maSAE = derive2 { name="maSAE"; version="0.1-4"; sha256="0287x5n41hl6p2s9f62zmjq87dklfyvb41fd9q3s1m2sjspgd6vc"; depends=[]; }; + maSAE = derive2 { name="maSAE"; version="0.1-5"; sha256="0v0vlj41j3ddyxv8lld39k1ryrdjin7r6bj13x2agbklb1fd4an1"; depends=[]; }; maboost = derive2 { name="maboost"; version="1.0-0"; sha256="18d36cgvn8p75nidfr6al458jbzwc1i7x77y1ks50y9phrz3wf65"; depends=[C50 rpart]; }; + macc = derive2 { name="macc"; version="1.0.0"; sha256="1d6acnp9k0al4nwggf5dqjiazasnika4899gb5j4rp2aihd8yly9"; depends=[car lme4 MASS nlme optimx]; }; + machQA = derive2 { name="machQA"; version="0.1.4"; sha256="1rdrjy9sxql2c9y691a1jrmgsv7m1ihsschixxb6wc7aahf7mav6"; depends=[machina plyr]; }; + machina = derive2 { name="machina"; version="0.1.6"; sha256="009mzqb5jgnilj9b5ldmm5600008bljlqacm8jjxvqsfnfdfg8zv"; depends=[DT httr jsonlite lubridate rhandsontable xts]; }; + macleish = derive2 { name="macleish"; version="0.3.0"; sha256="05zmk28yh54gnm09aps3q64s4igcb629b3zx7giinlfc4xx8qv74"; depends=[DBI dplyr etl lubridate readr]; }; mada = derive2 { name="mada"; version="0.5.7"; sha256="0a2m1rb4d143v9732392xzvbg6x1k3l0g3zscgbx64m21kxshmgb"; depends=[ellipse mvmeta mvtnorm]; }; maddison = derive2 { name="maddison"; version="0.1"; sha256="1ji51wnj0ybjd30b4bwn5npyswrmcfrbxcmdlngwzvca1knh8g1c"; depends=[]; }; madness = derive2 { name="madness"; version="0.2.0"; sha256="02swq1hzmsdcfjhlmjykd81cyygxfx4add9caj2q2z6xhmfh3rlv"; depends=[expm matrixcalc]; }; - mads = derive2 { name="mads"; version="0.1.3"; sha256="1nq17r9k2wg9v5nis0c0z4qf5pcmw93smxf7lra7vsiqgzgzhaad"; depends=[mrds]; }; - madsim = derive2 { name="madsim"; version="1.1"; sha256="1d9mv769zia43krdfl43hp22cp5mdi3ycwj3kxyfcjrg23bjnyc0"; depends=[]; }; - magclass = derive2 { name="magclass"; version="3.74"; sha256="0ikhh50k4i9d4h36yq0ccps4smqr0igrgxzfy23rg57dwcfzz3yz"; depends=[abind maptools ncdf4 reshape2 sp]; }; + madr = derive2 { name="madr"; version="1.0.0"; sha256="0lzg75kphz4a0w6n0jbsq87g72jvrbkyas4j813mryq2nv4lmsl4"; depends=[]; }; + mads = derive2 { name="mads"; version="0.1.5"; sha256="1ac34iff9hvl1bxk3gs5s3i311g9y59nd6v9jhvnfd6wfhck7krs"; depends=[mrds]; }; + madsim = derive2 { name="madsim"; version="1.2.1"; sha256="11gfyimbz363p5xy1x6rsz5fcgzcr55myc5aaz5lazjkcnfn17aq"; depends=[]; }; + mafs = derive2 { name="mafs"; version="0.0.2"; sha256="1yx4y73hnd30x6cad7md07aiikhdsa6bsbha72j9vlncaj8d504m"; depends=[cmprsk colorspace CombMSC Epi etm forecast forecastHybrid fracdiff ggplot2 ggseas gtable munsell numDeriv plyr quadprog Rcpp scales tictoc tidyr timeDate tseries zoo]; }; + magclass = derive2 { name="magclass"; version="3.85"; sha256="1l3s6j19yvyhprxk2817xmgr64xwkknvq53bfhjdbn2jqh5nx40x"; depends=[abind maptools ncdf4 reshape2 sp]; }; magic = derive2 { name="magic"; version="1.5-6"; sha256="1399w1zhz79nj8cdhslybncd9h6rylfhb548nv22ip0dxxdkyv0v"; depends=[abind]; }; - magicaxis = derive2 { name="magicaxis"; version="1.9.4"; sha256="0kgr29q4v9aq10l6zkddgv93zl66yzwxx9jsnskkx3r0kk3rlxa3"; depends=[MASS plotrix sm]; }; + magicaxis = derive2 { name="magicaxis"; version="2.0.0"; sha256="0f531qlwkp043qgwv58x1b07a3v03vnz0r20hlqqsx8z16jqw6i4"; depends=[celestial mapproj MASS plotrix sm]; }; + magicfor = derive2 { name="magicfor"; version="0.1.0"; sha256="07l33fczr1x42sfxrsqq4q6r65sdflin6l8f5cgclnvx1858jdip"; depends=[]; }; + magick = derive2 { name="magick"; version="0.3"; sha256="06ljr1avgp0ki9d15rrlcdz6n0m8v5rx07aq3xqa5zmkqgm6s0a5"; depends=[curl Rcpp]; }; + magree = derive2 { name="magree"; version="1.0"; sha256="1qkd6p5g3aigcb0f4d08gc5323alvahzmazm3bzsmz1w033xd1hh"; depends=[]; }; magrittr = derive2 { name="magrittr"; version="1.5"; sha256="1s1ar6rag8m277qcqmdp02gn4awn9bdj9ax0r8s32i59mm1mki05"; depends=[]; }; mail = derive2 { name="mail"; version="1.0"; sha256="1m89cvw5ba4d87kp2dj3f8bvd6sgj9k56prqmw761q919xwprgw6"; depends=[]; }; mailR = derive2 { name="mailR"; version="0.4.1"; sha256="1bfh3fxdqx9f9y3fgklxyslpcvhr9gcj7wsamaxzgrcsaxm8fdlw"; depends=[R_utils rJava stringr]; }; + makeFlow = derive2 { name="makeFlow"; version="1.0.2"; sha256="0r7a0klgx144rnks0fhjflnf8vfyyx2544n86nnxkp6cdvw0b4pw"; depends=[dplyr RColorBrewer]; }; makeProject = derive2 { name="makeProject"; version="1.0"; sha256="09q8xa5j4s5spgzzr3y06l3xis93lqxlx0q66s2nczrhd8nrz3ca"; depends=[]; }; + makedummies = derive2 { name="makedummies"; version="1.0"; sha256="1kyx0n620pnaaxi136f81kr55v94zlw2bikrky1sq9bhrvdlf7yh"; depends=[]; }; + malani = derive2 { name="malani"; version="1.0"; sha256="1jps28gfkiysr356ackxf1my5xz6rpx3a2bv68pziy2614hrqbs9"; depends=[e1071]; }; mallet = derive2 { name="mallet"; version="1.0"; sha256="06rksf5nvxp4sizgya7h4sb6fgw3yz212a01dqmc9p5a5wqi76x0"; depends=[rJava]; }; managelocalrepo = derive2 { name="managelocalrepo"; version="0.1.5"; sha256="180b7ikas1kb7phm4l2z1d8wi45wi0qyz2c8rl8ml3f71b4mlzgc"; depends=[assertthat stringr]; }; - mangoTraining = derive2 { name="mangoTraining"; version="1.0-6"; sha256="1g5qwc09whrsxlp2wvgx79p5mrjw5jj0q0k1bv08pq31djr7c3r3"; depends=[]; }; - manifestoR = derive2 { name="manifestoR"; version="1.2"; sha256="069nfhafqaqb4amkc40bcqc0qij1nl9h433l97q4vxq55aqr2hz0"; depends=[base64enc dplyr functional httr jsonlite magrittr NLP psych tm zoo]; }; + mangoTraining = derive2 { name="mangoTraining"; version="1.0-7"; sha256="0lw46j44jhdcyh079a7zjmxcnv5c6qsfachinlwv3ild1gwggr3p"; depends=[]; }; + manhattanly = derive2 { name="manhattanly"; version="0.2.0"; sha256="185fkakx4v35n4gmlpk2kfm2bm8p320q4khkw936m09zx3aqz398"; depends=[ggplot2 magrittr plotly]; }; + manifestoR = derive2 { name="manifestoR"; version="1.2.3"; sha256="0m9xgprm7w68ncm7qpqdcnrl409i4x33lrpwzap2za5r5bb5wv1n"; depends=[base64enc dplyr functional httr jsonlite magrittr NLP psych tibble tm zoo]; }; manipulate = derive2 { name="manipulate"; version="1.0.1"; sha256="1klknqdfppi5lf6zbda3r2aqzsghabcsaxmvd3vw3cy3aa984zky"; depends=[]; }; + manipulateWidget = derive2 { name="manipulateWidget"; version="0.5.1"; sha256="1i69y4gjm35xf3nd6bf031nkw91b0whbd7yd2a1fq5msv0mjqrss"; depends=[base64enc htmlwidgets knitr miniUI shiny]; }; mapStats = derive2 { name="mapStats"; version="2.4"; sha256="18pp1sb9p4p300ffvmzjrg5bv1i7f78mhpggq83myc26c3a593na"; depends=[classInt colorspace Hmisc lattice maptools RColorBrewer reshape2 sp survey]; }; mapdata = derive2 { name="mapdata"; version="2.2-6"; sha256="0k3hsnyvax20jph384gca10rl7a9fcglgkqcjsc5hndx3qrwpanv"; depends=[maps]; }; mapfit = derive2 { name="mapfit"; version="0.9.7"; sha256="16a318bz3my27qj0xzf40g0q4bh9alg2bm6c8jbwgswf1paq1xmx"; depends=[Matrix]; }; - mapmisc = derive2 { name="mapmisc"; version="1.4.6"; sha256="00v7jwjvw942xr1bd05n8i3abbzbcnbjzpm3mxb2sh32s4w1hifj"; depends=[raster sp]; }; + mapmisc = derive2 { name="mapmisc"; version="1.5.0"; sha256="1f6yjr3a26nm482ldnx8rzjhc0d9hlrpd48japm0sihxvmsz0pv3"; depends=[raster sp]; }; mapplots = derive2 { name="mapplots"; version="1.5"; sha256="09sk78a0p8hlwhk3w2dwvpb0a6p7fqdxyskvz32p1lcav7y3jfrb"; depends=[]; }; mapproj = derive2 { name="mapproj"; version="1.2-4"; sha256="1sywwzdikpnkzygb2jx9c67sgrykgbkm39dkf45clz3yylsib2ng"; depends=[maps]; }; - mapr = derive2 { name="mapr"; version="0.2.0"; sha256="1lfi6hrbifp4mfxnqn4qbnicjfnrg9pc73kdrk7hf3dfhgi5269n"; depends=[ggplot2 gistr httr leaflet RColorBrewer rworldmap sp spocc]; }; - maps = derive2 { name="maps"; version="3.1.0"; sha256="16hsw1vzkxm0rhfsryj1zsiywxaa5hn5dbyxvnb42grqgl6wrdkn"; depends=[]; }; - maptools = derive2 { name="maptools"; version="0.8-39"; sha256="1lkxlvk8h9v37cl87r39asm4mhyihllv105izgh7bfsxwh9y70ab"; depends=[foreign lattice sp]; }; + mapr = derive2 { name="mapr"; version="0.3.0"; sha256="0xgbc4zpjdd6lncccdd85ar909z7bv8yqrv5s1xrp2j2j1gv97z1"; depends=[ggplot2 gistr httr leaflet RColorBrewer rworldmap sp spocc]; }; + maps = derive2 { name="maps"; version="3.1.1"; sha256="0ajdrd4z66jpdjqdgk6vz89x7gh1isidgr8qkg0fq6cmrvjn08lp"; depends=[]; }; + maptools = derive2 { name="maptools"; version="0.8-41"; sha256="0niz4qssvd8g43z4a85mq5p7cs3s169sgc3p3rzviqqgcc0i6z7n"; depends=[foreign lattice sp]; }; maptpx = derive2 { name="maptpx"; version="1.9-2"; sha256="1i5djmjg0lsi7xlkbvn90njq1lbyi74zwc2nldisay4xsbgqg7fj"; depends=[slam]; }; maptree = derive2 { name="maptree"; version="1.4-7"; sha256="1k7v84wvy6wz6g0dyiwvd3lvf78rlfidk60ll4fz7chvr2nrqdp4"; depends=[cluster rpart]; }; - mapview = derive2 { name="mapview"; version="1.0.0"; sha256="1kk3slizi78qjnfwnv8jjhwb6x89w7ly11l7fxk4fny3zjzj1spa"; depends=[brew data_table gdalUtils htmltools htmlwidgets lattice latticeExtra leaflet OpenStreetMap png raster rasterVis Rcpp rgdal satellite scales sp]; }; + mapview = derive2 { name="mapview"; version="1.2.0"; sha256="0785jzs3kr6rcxz5p1mwpz7maq3z2mwxskl6whyzizbrkmxj2ikw"; depends=[brew data_table gdalUtils htmltools htmlwidgets lattice latticeExtra leaflet png raster Rcpp rgdal satellite scales sp viridisLite webshot]; }; mar1s = derive2 { name="mar1s"; version="2.1"; sha256="0psjva7nsgar5sj03adjx44pw0sdqnsd96m4g6k8d76pv30m1g7l"; depends=[cmrutils fda zoo]; }; - marelac = derive2 { name="marelac"; version="2.1.5"; sha256="1lzgcl6y4dmy3radzr49smy0cwdbd930dvah9rs50x637yqc7p14"; depends=[seacarb shape]; }; + march = derive2 { name="march"; version="1.4"; sha256="1wfhm33k2j5yim56sg0wd02ypfhlp9fc138vmdsdjp6nh4y23hnj"; depends=[]; }; + marelac = derive2 { name="marelac"; version="2.1.6"; sha256="024gbrdby6h722j58wl8xn8027sanlpnz1l3hhxnllwzbz3mbdz4"; depends=[seacarb shape]; }; marg = derive2 { name="marg"; version="1.2-2"; sha256="0j08zzcrj8nqsargi6xi50gy9pl4smmsp4b7ywlga7r1ga38g82r"; depends=[statmod survival]; }; + marima = derive2 { name="marima"; version="2.2"; sha256="03nvh93r4052li84yjqzc106gwh1542q9s192s980gs6sgy8scm6"; depends=[]; }; + marinespeed = derive2 { name="marinespeed"; version="0.1.0"; sha256="1r9bpggb88px8149dsga3xmkjhjq6ybs6a5kp60qz28iyr183mar"; depends=[bit geosphere sp]; }; markdown = derive2 { name="markdown"; version="0.7.7"; sha256="00j1hlib3il50azs2vlcyhi0bjpx1r50mxr9w9dl5g1bwjjc71hb"; depends=[mime]; }; - marked = derive2 { name="marked"; version="1.1.11"; sha256="12wh8djc0j7x4ywn7x57f93wyl05p6yv7808g6s5pn2v5j0v66q6"; depends=[coda expm lme4 Matrix numDeriv optimx R2admb Rcpp truncnorm]; }; - markmyassignment = derive2 { name="markmyassignment"; version="0.5.0"; sha256="17xw5hn0bg1w7vbs8d8kr6y0drrmkmpwfvr6dy3zndagzsb2sdw0"; depends=[codetools httr testthat yaml]; }; + marked = derive2 { name="marked"; version="1.1.13"; sha256="0zgfd7fdcrvvqnlgzarly16zjnipshxsa1g3j9jqc5kbqvh7fnh2"; depends=[coda expm lme4 Matrix numDeriv optimx R2admb Rcpp TMB truncnorm]; }; + markmyassignment = derive2 { name="markmyassignment"; version="0.6.1"; sha256="167q4fwn2ssqn588wx3ig923rcr74m95na1z1wdfy67jczsk492l"; depends=[codetools httr lazyeval testthat yaml]; }; markophylo = derive2 { name="markophylo"; version="1.0.4"; sha256="12np5rg59wjyh1mfhhfh115ziciba973fjvbrhn4qzdnry1mwbdb"; depends=[ape numDeriv phangorn Rcpp RcppArmadillo]; }; - markovchain = derive2 { name="markovchain"; version="0.4.3.1"; sha256="0ik8wkg8cj6z5ys3lm15jkslsxq2j2ahzw2nc7q0qrvgzbmfck6w"; depends=[expm igraph matlab Matrix Rcpp RcppArmadillo RcppParallel]; }; + markovchain = derive2 { name="markovchain"; version="0.6.6"; sha256="165zh185fjgr61ah4y763816fai6g6phj64afdlklbsj5an1mvr9"; depends=[expm igraph matlab Matrix Rcpp RcppArmadillo RcppParallel]; }; marl = derive2 { name="marl"; version="1.0"; sha256="0rndnf3rbcibv3gsrw1kfp5zhg37cw9wwlz0b7dbwprd0m71l3pm"; depends=[]; }; - marmap = derive2 { name="marmap"; version="0.9.5"; sha256="0avdi55b43nrkryygs7g3l62g48m1b2zhjf7xcwx7q166k7lb7ax"; depends=[adehabitatMA DBI gdistance geosphere ggplot2 ncdf4 plotrix raster reshape2 RSQLite shape sp]; }; + marmap = derive2 { name="marmap"; version="0.9.6"; sha256="1b0mpygk18ri0xs9f56j2g7zmka7krnw7fmh9m9xisbvq2g23g92"; depends=[adehabitatMA DBI gdistance geosphere ggplot2 ncdf4 plotrix raster reshape2 RSQLite shape sp]; }; marqLevAlg = derive2 { name="marqLevAlg"; version="1.1"; sha256="1wmqi68g0flrlmj87vwgvyxap0miss0n42qiiw7ypyj4jw9kwm8j"; depends=[]; }; + mason = derive2 { name="mason"; version="0.2.5"; sha256="1v2gja8kbwzx5c8y8gchh4rwwprv99ad0nhgb0hnfgjnqsbdmdv7"; depends=[assertive broom dplyr lazyeval magrittr tidyr]; }; matR = derive2 { name="matR"; version="0.9"; sha256="0lih3g2z6rxykprl3s529xcf466bpzpsv4l20dkgx1fgfslfcl2p"; depends=[BIOM_utils MGRASTer]; }; - matchingMarkets = derive2 { name="matchingMarkets"; version="0.2-1"; sha256="14y1sigmi3rv8rpvcyc2d7j4dlzr85mhsqrgdjfszxz26rahkx6k"; depends=[lpSolve partitions Rcpp RcppArmadillo RcppProgress]; }; + matchMulti = derive2 { name="matchMulti"; version="1.1.5"; sha256="186ndliw32aqbcpacd1hjsab7dm38sxmgh77iyp203swif1iv6jn"; depends=[coin Hmisc MASS mvtnorm plyr rcbsubset weights]; }; + matchingMarkets = derive2 { name="matchingMarkets"; version="0.3-2"; sha256="1kajwh81l4h30szdpg8y5178cswgp89zifh5nsw5480k6n2g6asa"; depends=[partitions Rcpp RcppArmadillo RcppProgress rJava]; }; matchingR = derive2 { name="matchingR"; version="1.2.1"; sha256="09vx3yqaq0pq341v8rm2hjxx0aza0bnh9iffrygwbhls7fi7kn7y"; depends=[Rcpp RcppArmadillo]; }; - matconv = derive2 { name="matconv"; version="0.3.0"; sha256="19b03ks2pqsz7wk3wm7iaj5z5aidsd6hn0s0x46r2iv13x67fjkd"; depends=[]; }; - mateable = derive2 { name="mateable"; version="0.3.0"; sha256="0jbdfijf9iq5ik5pri0iricip9hglp75jask65iyf1k8n82hippb"; depends=[FNN Rcpp sn]; }; + matconv = derive2 { name="matconv"; version="0.3.2"; sha256="0vnmqz5vzv5n0cfpgr30gkl0pv8p2b5cp3ap6mn01sxd671lx38z"; depends=[]; }; + mateable = derive2 { name="mateable"; version="0.3.1"; sha256="1ka9xxicibpfg6k3njq5f5576jwj734r1mb46a2cmiyq676ks7pp"; depends=[FNN Rcpp sn]; }; mathgraph = derive2 { name="mathgraph"; version="0.9-11"; sha256="0xikgzn24p0qqlrmaydmjk5yz5pq2rilsvpx86n3p2k2fc3wpwjy"; depends=[]; }; matie = derive2 { name="matie"; version="1.2"; sha256="1ymx49cyvz63imqw5n48grilphiqvvdirwsrv82p7jgxdyav2xv0"; depends=[cba dfoptim gplots igraph mvtnorm seriation]; }; matlab = derive2 { name="matlab"; version="1.0.2"; sha256="0m21k2vzbc5d3c93p2hk4208xyd2av2slg55q5j1ibjidiryqgd2"; depends=[]; }; - matlabr = derive2 { name="matlabr"; version="1.1"; sha256="0h9h805569dxnrrzgmxmhvmx7l8kg53lq1nksdrr7p9f8jglha6s"; depends=[stringr]; }; - matlib = derive2 { name="matlib"; version="0.7.2"; sha256="1832i9c9cp2klblwf6wbpigpzsnlli912dzkabjp5zlzkngbfym5"; depends=[rgl]; }; + matlabr = derive2 { name="matlabr"; version="1.1.3"; sha256="0kbfvc83ccyg3dzviz0xz2jn7n3zcjlp4g3qwi623b5f2pvw7qq4"; depends=[stringr]; }; + matlib = derive2 { name="matlib"; version="0.8.1"; sha256="080mbmr1lb5ha5ql40hv0idcnnbyaai46c42z756kdyq9pdzcabf"; depends=[car rgl]; }; matpow = derive2 { name="matpow"; version="0.1.1"; sha256="1a6q21ba16qfdpykmjwgmrb1kkvvyx48qg8cbgpdmch0vhibcgcp"; depends=[]; }; - matrixStats = derive2 { name="matrixStats"; version="0.50.1"; sha256="08l32abp7dfnsc49ca4hzznh934y60n5z01x5ga2ixky5961s57c"; depends=[]; }; + matrixLaplacian = derive2 { name="matrixLaplacian"; version="1.0"; sha256="1ixqdv3sz3sc79wn3vqhlq79j7x7cvl878m5hgvbcg6klfvlmmci"; depends=[scatterplot3d]; }; + matrixStats = derive2 { name="matrixStats"; version="0.51.0"; sha256="0bsalx605kgb9nl7mfnq1qinkyd9s97p8plymsyfja1gmcnjrcpj"; depends=[]; }; matrixcalc = derive2 { name="matrixcalc"; version="1.0-3"; sha256="1c4w9dhi5w98qj1wwh9bbpnfk39rhiwjbanalr8bi5nmxkpcmrhp"; depends=[]; }; - matrixpls = derive2 { name="matrixpls"; version="0.7.0"; sha256="1bzgw5lghi3q9qgjcs87w2b0slvxy4cppr9p378p44hqzf00na4h"; depends=[assertive lavaan MASS matrixcalc psych]; }; + matrixpls = derive2 { name="matrixpls"; version="1.0.4"; sha256="1pysvf224wpkawdvz3y38cy8s3lg34s37ip6ybzfxm4vanzj1xjc"; depends=[assertive lavaan MASS matrixcalc psych]; }; maxLik = derive2 { name="maxLik"; version="1.3-4"; sha256="0jjb5kc7dvx940ybg7b7z9di79v75zm2xlb0kj2y7rmi45vvh6hq"; depends=[miscTools sandwich]; }; maxent = derive2 { name="maxent"; version="1.3.3.1"; sha256="1skc7d0p6kg0gi1bpgaqn2dmxjzbvcphx5x3idpscxfbplm5v96p"; depends=[Rcpp SparseM tm]; }; - maxlike = derive2 { name="maxlike"; version="0.1-5"; sha256="0h544wr7qsyb70vmbk648hfyb6arrsb41gw39svcin412rhw9k9j"; depends=[raster]; }; - maxstat = derive2 { name="maxstat"; version="0.7-23"; sha256="1dp2gp0zsf3l5vd43ixxx7039ybcw84x9zf526pk1p2j7pxwsbay"; depends=[exactRankTests mvtnorm]; }; - mbbefd = derive2 { name="mbbefd"; version="0.8-0"; sha256="1vpbclkbfw8cas4474sbmnnvab3vrqivmgby95prm40p3xdy9xl4"; depends=[actuar alabama fitdistrplus gsl MASS Rcpp]; }; + maxlike = derive2 { name="maxlike"; version="0.1-7"; sha256="0gi33hcjj456sjw7l3q4n46k4cb6m3ml3ycd93pnajxacl24swbb"; depends=[raster]; }; + maxmatching = derive2 { name="maxmatching"; version="0.1.0"; sha256="1xbwrhmr8gzvlcprib7nzvqrcd355bhx7wkqxrvfk4g7dvskf9ka"; depends=[igraph]; }; + maxnet = derive2 { name="maxnet"; version="0.1.2"; sha256="1rfcylbv068pz4jgry5ijszwf5fibz566s5iv0ar8dhv0fhjr86z"; depends=[glmnet]; }; + maxstat = derive2 { name="maxstat"; version="0.7-24"; sha256="1l7q83233jbxsly081mnc7lf20nn894hcynq3sm3hjxkvrplzsm9"; depends=[exactRankTests mvtnorm]; }; + mazeGen = derive2 { name="mazeGen"; version="0.1.1"; sha256="1vqhcypxbw15prc77i1jl8vnb1q3lr9bb9s6ql2pcadv3i02ybnb"; depends=[igraph]; }; + mbbefd = derive2 { name="mbbefd"; version="0.8.8"; sha256="17f2y4xi5fxc6mms519xjb9qg94qqlxv0mhdbhjyyfg3x6bj7bsq"; depends=[actuar alabama fitdistrplus gsl MASS Rcpp]; }; + mbclusterwise = derive2 { name="mbclusterwise"; version="1.0"; sha256="1ilqaxcxf1k3ck910s0xqwnp88w8ag5rn1dpvaa1i7jlcldsbnhp"; depends=[ade4 doParallel foreach kknn]; }; mbest = derive2 { name="mbest"; version="0.5"; sha256="0l6vmcqkd2b0b90jmsswrhbdmhq2x92g7sr2l99rp7xp1cxdq02w"; depends=[bigmemory foreach lme4 logging nlme]; }; mblm = derive2 { name="mblm"; version="0.12"; sha256="17h65bapvz89g5in3gkxq541bxgpj9pciz6i5hzhqn0bdbsb3k6r"; depends=[]; }; mbmdr = derive2 { name="mbmdr"; version="2.6"; sha256="0ss5w66hcgd8v8j9bbbp12a720sblhr2hy9kidqfr8hgjaqlch86"; depends=[logistf]; }; - mboost = derive2 { name="mboost"; version="2.6-0"; sha256="0ldg293nv4i8541w4il7hrw9hqgdk4q204dvrbmsrdb8i9cpm3s5"; depends=[lattice Matrix nnls party quadprog stabs survival]; }; - mc2d = derive2 { name="mc2d"; version="0.1-16"; sha256="0pw89pqmwlavb2bhhshv68fzf6s16a3rwj52prylv9clr07rw7pa"; depends=[mvtnorm]; }; + mboost = derive2 { name="mboost"; version="2.7-0"; sha256="1gzn80ixvdv560zl2r6gzcpbjcvhnkmdpis1l4gvidd7amrfzfp2"; depends=[lattice Matrix nnls party quadprog stabs survival]; }; + mbrglm = derive2 { name="mbrglm"; version="0.0.1"; sha256="0yxq1xk8qy5hpiqqldyrs78lp4ggdp5lj2lmh8rqq1xvsfr6nrh4"; depends=[enrichwith nleqslv]; }; + mc2d = derive2 { name="mc2d"; version="0.1-17"; sha256="07gxh9lpkrxvq7m1vbh8k4l4ka7wqf40sbj1zv99avlsvh9aicya"; depends=[mvtnorm]; }; mcGlobaloptim = derive2 { name="mcGlobaloptim"; version="0.1"; sha256="1p8841y9a4yq51prv6iirgw9ln8jznx8nk547sc5xlznksjy1g9n"; depends=[randtoolbox snow]; }; mcIRT = derive2 { name="mcIRT"; version="0.41"; sha256="0pbwydl4zjzwdlpzwpqm4xhq716zgq9s7bvcbrqp6q0jkba9zjnw"; depends=[Rcpp RcppArmadillo]; }; + mcPAFit = derive2 { name="mcPAFit"; version="0.1.3"; sha256="0yg79sry8jdp17mbdnfaj2phg3vdxs11si7hmfh5csfk7maax8v6"; depends=[PAFit RColorBrewer Rcpp]; }; mcbiopi = derive2 { name="mcbiopi"; version="1.1.2"; sha256="12h4bv3hx1m6bsqdxj5n3b5gh98ms508am8pigz7ckmv0xkyhx85"; depends=[]; }; mcc = derive2 { name="mcc"; version="1.0"; sha256="0p661a870bvh3xhcahqqq85azn9rjl3vacjy96jsdn86irj4s0vi"; depends=[]; }; mcclust = derive2 { name="mcclust"; version="1.0"; sha256="00qprmsjwbn2d0jl7p9mz8pv7k8ld3mzk862pr1grigk0lqwhx06"; depends=[lpSolve]; }; mcemGLM = derive2 { name="mcemGLM"; version="1.1"; sha256="07ky3bvcns24qia9pyvf5lp7764h8gn2g8zr304iz4x9bq6jvsi0"; depends=[Rcpp RcppArmadillo trust]; }; - mcga = derive2 { name="mcga"; version="2.0.9"; sha256="197yldx03c634f3x0mpxxvqrys93n7z7n3x0alvqa42z3vdkrz7b"; depends=[]; }; + mcga = derive2 { name="mcga"; version="3.0.1"; sha256="0q0nn881lii8wfw28k8jh9z0kbi5ljcwi2wpq460k2w3agsjzw5n"; depends=[GA Rcpp]; }; + mcgfa = derive2 { name="mcgfa"; version="1.0.0"; sha256="19q6lmrmbl3sh844n7mnl1r01bs8kgf0gghy4p4xmba1la0cb67k"; depends=[pgmm]; }; mcgibbsit = derive2 { name="mcgibbsit"; version="1.1.0"; sha256="09ydcbjz3abmh46966v01dh26fy79dfklk3zjf262zp3c62ld9yf"; depends=[coda]; }; + mcglm = derive2 { name="mcglm"; version="0.3.0"; sha256="1q2zc0xn4inp9inadb52yc0svbh581qxxjzc08pgrm9l3xms4a14"; depends=[assertthat Matrix]; }; mcheatmaps = derive2 { name="mcheatmaps"; version="1.0.0"; sha256="1gglm32xpmim38m7fziczgqfbpcq2899lxardsrzg6j1vhmf765y"; depends=[gridBase]; }; + mclcar = derive2 { name="mclcar"; version="0.1-8"; sha256="1hrjfjbsxh8g6bw2cfxciry8hn9xxfg4bww5p1sjq98v8bsqcx23"; depends=[fields maxLik nleqslv rsm spam spdep]; }; mcll = derive2 { name="mcll"; version="1.2"; sha256="0i9zqbh0l9a9mv4558gbdq9mh52chanykyfwmiymmxygxhp809sz"; depends=[locfit statmod]; }; - mclogit = derive2 { name="mclogit"; version="0.3-1"; sha256="0zyms6v9qjh6a5ccahfanarp4sg49yingb8wpjcz61skqvm8j7qx"; depends=[Matrix]; }; - mclust = derive2 { name="mclust"; version="5.1"; sha256="11hn3bdp6sl1l39v9c5afp6my11w2wxgqrbq0ahhll254va88sgd"; depends=[]; }; + mclogit = derive2 { name="mclogit"; version="0.4.4"; sha256="1nnzds9md3drcgblzpbg39a53v4npdbi0xp3xgw8xqfyy37nia59"; depends=[Matrix memisc]; }; + mclust = derive2 { name="mclust"; version="5.2.2"; sha256="19cbg7p5h2b6h9mvcx9rjppyd3awma18ymaljakbnclpvhwbqpwd"; depends=[]; }; mcmc = derive2 { name="mcmc"; version="0.9-4"; sha256="1ws80j64df8inzz0a6k8r51wf44zwjnpvp591pxwah2jbi6j6kna"; depends=[]; }; mcmcplots = derive2 { name="mcmcplots"; version="0.4.2"; sha256="0ws2la6ln016l98c1rzf137jzhzx82l4c49p19yihrmrpfrhr26l"; depends=[coda colorspace denstrip sfsmisc]; }; - mcmcse = derive2 { name="mcmcse"; version="1.1-2"; sha256="1nvq1phv9ldp928yh7n97lsak26ycj717sic1cc1s46wv2rhjx0h"; depends=[ellipse Rcpp RcppArmadillo]; }; + mcmcse = derive2 { name="mcmcse"; version="1.2-1"; sha256="18k2cp5hpr3lzv9yva5qc379iq9aysnl872dv8jidwrj4iy2xccy"; depends=[ellipse Rcpp RcppArmadillo]; }; mco = derive2 { name="mco"; version="1.0-15.1"; sha256="14y10zprpiflqsv5c979fsc2brgxay69kcwm7y7s3gziq74fn4rw"; depends=[]; }; - mcparallelDo = derive2 { name="mcparallelDo"; version="1.0.0"; sha256="17k284siffaslgijldl0j0civjhgnfzpxrahlvj22p8rf2vspdhs"; depends=[ArgumentCheck R_utils R6]; }; - mcprofile = derive2 { name="mcprofile"; version="0.2-1"; sha256="0q1d236mcmgp5p5gl474myp1zz8cbxffd0kvsd8338jijalj05p0"; depends=[ggplot2 mvtnorm quadprog]; }; + mcparallelDo = derive2 { name="mcparallelDo"; version="1.1.0"; sha256="1ivh0d4f7ks6xwcjywk62h1zhr7h5bbhzpisky7973wi4g8vipbn"; depends=[checkmate R_utils R6]; }; + mcprofile = derive2 { name="mcprofile"; version="0.2-3"; sha256="0rakaa1p6z0p4jl4df357vi58wzph81ik6plc8zzl370r8mj1y8q"; depends=[ggplot2 mvtnorm quadprog]; }; mcr = derive2 { name="mcr"; version="1.2.1"; sha256="0237w41xichd418ax9xviq4wxbcc6c0cgr5gvzkca67nnqgc4jaz"; depends=[]; }; mcsm = derive2 { name="mcsm"; version="1.0"; sha256="13sx7s3ywis5n4a70ld2szld9fb8jkfsc82dy6iskhy17vy8pml0"; depends=[coda MASS]; }; + mctest = derive2 { name="mctest"; version="1.1"; sha256="0ck41xkrhfznzqqxk5yx5467ayd7wxqcjb6dzizbyz6dyjxbwm0n"; depends=[]; }; md = derive2 { name="md"; version="1.0.4"; sha256="13z8f3p84kivk6j58fb1qpzrmml41mq9pgv9nv2gvxrhyhanzi46"; depends=[]; }; - mda = derive2 { name="mda"; version="0.4-8"; sha256="1vb98zi0narqh2bwnjm33jnfzvgnaf1chh263xkgkpjb3ph0lvpd"; depends=[class]; }; - mdatools = derive2 { name="mdatools"; version="0.7.0"; sha256="0b010nmldafb5ibm0wzn4hxsyhwkx5f0g79mbcfh8lsq9zprq9am"; depends=[]; }; + mda = derive2 { name="mda"; version="0.4-9"; sha256="11gxgy4f3k03c4z6jpkzb4ynv0zl3k93b5s88ib8jjavzb95c95p"; depends=[class]; }; + mdatools = derive2 { name="mdatools"; version="0.8.2"; sha256="11xlfgcn8gb19alfjp268mlid9g2rl69s1nlm5plwyy5h8x0hvcj"; depends=[]; }; mded = derive2 { name="mded"; version="0.1-2"; sha256="1j8fcz5yc70p9qd9l010xj1b625scdps8z1pqh75b45p2hiqbhlc"; depends=[]; }; - mdhglm = derive2 { name="mdhglm"; version="1.2"; sha256="0k7y5j03i49m791m99vy0cal9w5nc38w18j1zq1zqdccpcndz9pj"; depends=[boot Matrix mvtnorm numDeriv]; }; - mdscore = derive2 { name="mdscore"; version="0.1-2"; sha256="1g473rwffkb2x6y6wcm98i6xr5dhz11ypnbrvhb2klbvi81jj511"; depends=[MASS]; }; + mdftracks = derive2 { name="mdftracks"; version="0.2.0"; sha256="0l8dc6ljrhbm8jwadaa3xkf6nx90vyiig15p7rryswczz9hw5ga6"; depends=[hellno]; }; + mdhglm = derive2 { name="mdhglm"; version="1.6"; sha256="1lvckais4c3pbf6zrpfkdlyqhcg4jaw11n00622h9ks413fl788v"; depends=[boot Matrix mvtnorm numDeriv]; }; + mdmb = derive2 { name="mdmb"; version="0.2-0"; sha256="13pkz0mjvd5gph1fpz3cd2yn5mb0lsvyjr7xr9bbikh11jqx80wb"; depends=[CDM coda miceadds sirt TAM]; }; + mdpeer = derive2 { name="mdpeer"; version="0.1.0"; sha256="0z84xm189v99frnayp4vr0qr7fr495sai5mjvyqpv9cbhvqn3xkr"; depends=[ggplot2 glmgraph glmnet magic MASS nlme nloptr reshape2 scalreg]; }; + mdsOpt = derive2 { name="mdsOpt"; version="0.1-1"; sha256="1fz80nc4xxd8q9zdfa38z159n35jf9y90ys39rgdzmc7ahqpkvh1"; depends=[clusterSim smacof]; }; + mdscore = derive2 { name="mdscore"; version="0.1-3"; sha256="10cl5r6kd9chdik5v0q91x40xpw2cjvvyi220z4bvngpb0989x8j"; depends=[MASS]; }; mdsdt = derive2 { name="mdsdt"; version="1.2"; sha256="0nbzc54jac4wmfyrs821ycxh749cb1zfxcws0nbpk35rydqkc627"; depends=[ellipse mnormt polycor]; }; + mdsr = derive2 { name="mdsr"; version="0.1.3"; sha256="19ryy7cm2ia3xi54r0176n72y7w35dqml0l7ysi6qd8zy4yavkvx"; depends=[babynames DBI dplyr ggplot2 mosaic RMySQL]; }; + meanShiftR = derive2 { name="meanShiftR"; version="0.50"; sha256="0wb08x9vanwfzs7ijskl53118jvy3z48gqda7gn33aq82dkablza"; depends=[]; }; measuRing = derive2 { name="measuRing"; version="0.3"; sha256="16lgvk9lm0vjy50das0qq0h0z683hh94spjcdmkljmxxzwmzfl4b"; depends=[pastecs png tiff]; }; - meboot = derive2 { name="meboot"; version="1.4-6"; sha256="17wjvc375vnya1lhkj10nsn68k1j3zy036031qca3wxx6wqw9kzx"; depends=[dynlm nlme]; }; + measurements = derive2 { name="measurements"; version="1.1.0"; sha256="1zi6mpwyxycbphq48s7vfc8gm76nidpa2gafp0jxiv56rwpv3jc3"; depends=[]; }; + meboot = derive2 { name="meboot"; version="1.4-7"; sha256="1i0h71aj49hyj889447s611gz668ys7xlr1i82b5nvaf6chfbfin"; depends=[dynlm nlme]; }; medSTC = derive2 { name="medSTC"; version="1.0.0"; sha256="1f7w6jbxairqvghr5b7vgdllg3ian16a1fgi7vqlq0mhy2j6phan"; depends=[]; }; mederrRank = derive2 { name="mederrRank"; version="0.0.8"; sha256="1fvvik3bhjm6c0mhi2ma915986k2nj3lr2839k5hfrr7dg3lw3f4"; depends=[BB numDeriv]; }; - medflex = derive2 { name="medflex"; version="0.6-0"; sha256="1qwjs418i2wxmszgax4l859ihk2avlxwm5w0a772zi6gj0kqwk3d"; depends=[boot car Matrix multcomp sandwich]; }; + medfate = derive2 { name="medfate"; version="0.2.2"; sha256="1vw9j04063sjwyfdkk94xsgz5zps7vmqha6dbsvi8ncb951cfijp"; depends=[meteoland Rcpp sp spdep]; }; + medflex = derive2 { name="medflex"; version="0.6-1"; sha256="0i3808qh4ryqcgx5rl60d4xdy25wzx008abijg5fcirsrdly7j91"; depends=[boot car Matrix multcomp sandwich]; }; mediation = derive2 { name="mediation"; version="4.4.5"; sha256="0jq0gg5ydqvy0vv8m7xk609ljw7p31jppgwgin3y3mvd32wapgk3"; depends=[Hmisc lme4 lpSolve MASS Matrix mvtnorm sandwich]; }; medicalrisk = derive2 { name="medicalrisk"; version="1.2"; sha256="1zdxv3rj7768kbyxfvr9n0hp4z7y0sf3r7ssqv731hjjp656l6xp"; depends=[hash plyr reshape2]; }; + medicare = derive2 { name="medicare"; version="0.2.0"; sha256="1z0ch704cw43hsp97j9mf6s0w9rpiv76swk7xlbiqcmyv7wivrhy"; depends=[]; }; mefa = derive2 { name="mefa"; version="3.2-7"; sha256="1qrf6d3y38q7yy6bg3bxg7514d9paz1f8y6sr7lbksi30qn92fmj"; depends=[]; }; - mefa4 = derive2 { name="mefa4"; version="0.3-3"; sha256="1bb5m6hqs79jbs51crl8h73lwvfqnj99jqgagb0whpxg9yviffrn"; depends=[Matrix pbapply]; }; + mefa4 = derive2 { name="mefa4"; version="0.3-4"; sha256="11zg30i2fkxdv8fn7jilbmm7k5g0ls8f91bpq6qiwiagwg8gj2lh"; depends=[Matrix pbapply]; }; megaptera = derive2 { name="megaptera"; version="1.0-0"; sha256="1fczhdydqca1jcdc315kwrhxcjisxfq23l4sm7m2011k5nrjmv37"; depends=[ape ips RPostgreSQL seqinr snowfall XML]; }; meifly = derive2 { name="meifly"; version="0.3"; sha256="1x3lhy7fmasss0rq60z5qp74ni32sahw62s8cnp2j431sp95pczc"; depends=[leaps MASS plyr]; }; + melviewr = derive2 { name="melviewr"; version="0.0.1"; sha256="19syc3d6zc0hmcjjdj7ibrdqxcdlh95ny970f3ska453qh1898b2"; depends=[cairoDevice gtools gWidgets gWidgetsRGtk2 jsonlite RColorBrewer RGtk2 RNifti]; }; mem = derive2 { name="mem"; version="1.4"; sha256="1d3fgllh7fhlfz3rz2jm31r8vn7msz4na4762iaw161qp2j101db"; depends=[boot sm]; }; memgene = derive2 { name="memgene"; version="1.0"; sha256="00b1mi2hvzzps542mh2p96s27kjqkpcic7djklfcwnfn1m4bz0i5"; depends=[ade4 gdistance raster vegan]; }; - memisc = derive2 { name="memisc"; version="0.99.6"; sha256="0pjcg0z4m1kr12cj1x1lm8snjldb2f1xp2sx0v6k7c1xdzmsxnmc"; depends=[lattice MASS]; }; + memisc = derive2 { name="memisc"; version="0.99.8"; sha256="1wdh8qsf6n3zg5hkgjngnabbabi0kq31prcscm39kfiv3jmvh7pk"; depends=[lattice MASS]; }; + memo = derive2 { name="memo"; version="1.0"; sha256="1pqlsn79gpm0d5bxnjg1c1gjaqdrdvcjvr84zpfk6nmsb2862w48"; depends=[digest]; }; memoise = derive2 { name="memoise"; version="1.0.0"; sha256="0sq2dhpvxy17v1baj256r0jnygdy3m5a8x4zh6vhv29957qnq6zx"; depends=[digest]; }; - memuse = derive2 { name="memuse"; version="2.5"; sha256="1a34803k41644yw1h3msywslsfjvnxi5c9yjw0b73znzy76wh6wv"; depends=[]; }; - merTools = derive2 { name="merTools"; version="0.2.0"; sha256="146rskqzvmkvra5kvnfmn8r0g1jbbw16w9hxgzpa91xvq3bwz6qa"; depends=[abind arm blme broom DT ggplot2 lme4 mvtnorm plyr shiny]; }; + memuse = derive2 { name="memuse"; version="3.0-1"; sha256="1fxjw209sjk9cfbbfw1ixnf2s8zzc73gnksxa9qax4mp6145i1w5"; depends=[]; }; + merDeriv = derive2 { name="merDeriv"; version="0.1-1"; sha256="1bkpn4a4g9ps0wzrw77w0lj14h6rdpz1bicwqvv98316ggv0zkxw"; depends=[lme4 Matrix nonnest2 sandwich]; }; + merTools = derive2 { name="merTools"; version="0.3.0"; sha256="1kc32zm1wmmivf1qfs6vi7y8kwibj6sr540is82dyh7xdmbc5mx3"; depends=[abind arm blme broom dplyr DT ggplot2 lme4 mvtnorm shiny]; }; merror = derive2 { name="merror"; version="2.0.2"; sha256="13d9r5r83zai8jnzxaz1ak40876aw20zbpr244gs55rvj5j7f87q"; depends=[]; }; - metRology = derive2 { name="metRology"; version="0.9-17"; sha256="1g4gv3mpii71i6imfwqg9d5iwfx03bq4lizzhx7dy39b2mj7jd4q"; depends=[MASS numDeriv]; }; - meta = derive2 { name="meta"; version="4.3-2"; sha256="0970snzclh83rz446m1r2bkfiylxx444z6bp7ah6lka488wmyck6"; depends=[]; }; - meta4diag = derive2 { name="meta4diag"; version="1.0.20"; sha256="1x0s5jz1wnk7h9skxnyha8p0b77mfffn2y4i9sl7nr6rmkn7caj9"; depends=[cairoDevice RGtk2]; }; + metRology = derive2 { name="metRology"; version="0.9-23-2"; sha256="16hdcrqa15mf2cfgl6r9awd0y2kwrdbld8sxqmwnchlvdbm6gib4"; depends=[MASS numDeriv robustbase]; }; + metScanR = derive2 { name="metScanR"; version="0.0.1"; sha256="1mhdgrh4nc14avfsf1f4rpq8qxkgsd9v65dvhvqq7swykia9vsfv"; depends=[geosphere ggmap leaflet plotly RColorBrewer rjson]; }; + meta = derive2 { name="meta"; version="4.7-1"; sha256="1b5g0rd5bllz3g4if7j5crgavz2a5mky5gchfpxyp0yl2jar4br3"; depends=[]; }; + meta4diag = derive2 { name="meta4diag"; version="2.0.5"; sha256="0hwzwyzr23sqlqpx2372419167wad1q7spyzmcxhf4f5hmqv14c9"; depends=[caTools shiny shinyBS sp]; }; metaLik = derive2 { name="metaLik"; version="0.42.0"; sha256="1rk5mwgmgnqq2hrzbh936hzw3aa815l12r1a1qywap5ggmmyhszl"; depends=[]; }; metaMA = derive2 { name="metaMA"; version="3.1.2"; sha256="1mjyz06q1kc8lhfixpym4ndpnisi1r849fj3da6riwfd6ab1v181"; depends=[limma SMVar]; }; metaMix = derive2 { name="metaMix"; version="0.2"; sha256="0xlsdgincxwjzyr4i8qfmfw2wvgf41qbmyhf2rxcbarf7rmwhmqf"; depends=[data_table ggplot2 gtools Matrix Rmpi]; }; metaRNASeq = derive2 { name="metaRNASeq"; version="1.0.2"; sha256="1xz7df7ypq4326yg429pgxd6aldp14c3h3qi20j5nqr5xgsdgzqa"; depends=[]; }; - metaSEM = derive2 { name="metaSEM"; version="0.9.6"; sha256="18ghgvpm915l5g0gq45r29zbh5k0gi8ygr4dcv7xn36r8b0zgc0r"; depends=[ellipse MASS Matrix OpenMx]; }; + metaSEM = derive2 { name="metaSEM"; version="0.9.12"; sha256="1lmsqpfb1yxdlwb2qhcsm7111w25qlz6794i2pwf5wmaixwyw0nj"; depends=[ellipse MASS Matrix OpenMx]; }; metabolomics = derive2 { name="metabolomics"; version="0.1.4"; sha256="0m5d2784mkpkkg396y3vpvf38vmba5kvxarilq3zf818vjs4pnax"; depends=[crmn gplots limma]; }; - metacom = derive2 { name="metacom"; version="1.4.3"; sha256="0djq2ry2vriayn839f0pgkq4j8j1zyd8ribmzn6ngfhz305fszlq"; depends=[devtools lattice vegan]; }; + metacoder = derive2 { name="metacoder"; version="0.1.2"; sha256="0srrmmn86jpxdx463qngd1fj8ssnly18kb74csa9957n1lr0l9xf"; depends=[ape dplyr ggplot2 igraph lazyeval magrittr RColorBrewer RCurl readr reshape reshape2 scales seqinr stringr taxize traits zoo]; }; + metacom = derive2 { name="metacom"; version="1.4.4"; sha256="14snpgdl8lwfh3fy63728jpxp6yjchq7i5sqfhzkfmrmy3kwgl22"; depends=[vegan]; }; metacor = derive2 { name="metacor"; version="1.0-2"; sha256="04k3ph0yg3jp8x4g6l1h4m0qwl51mx0626xmm0fzr1pv4b4a1ypw"; depends=[gsl rmeta]; }; metafolio = derive2 { name="metafolio"; version="0.1.0"; sha256="18s78lljwnn3j0l3mqc0svszcb3c8yzyzlpnimndbiq9yxagxnnf"; depends=[colorspace MASS plyr Rcpp RcppArmadillo]; }; - metafor = derive2 { name="metafor"; version="1.9-8"; sha256="1wcryg32ln8prcxc0x1r0ms01c4mxd6vzhpb9bv9r2qpjjc7ixm7"; depends=[Matrix]; }; - metafuse = derive2 { name="metafuse"; version="1.0-1"; sha256="0r64s0nqc75knk378ffhgk1y3i0j3k4ff0scya2p925ra18vfn9p"; depends=[glmnet MASS Matrix]; }; - metagear = derive2 { name="metagear"; version="0.2"; sha256="02h7bzhijb9glzayin1wby4pkskfdav4m3grvrkz8iq9srnxskc5"; depends=[EBImage gWidgets gWidgetsRGtk2 MASS Matrix metafor stringr]; }; + metafor = derive2 { name="metafor"; version="1.9-9"; sha256="14287z65ffm013787wfnyb9842zcv63i97g445xa4j8075p8sp7p"; depends=[Matrix]; }; + metafuse = derive2 { name="metafuse"; version="2.0-1"; sha256="1zdw22f5kzvy2xr3c2csy873hcags60as567brc2sw17d0apfy8j"; depends=[evd glmnet MASS Matrix]; }; + metagear = derive2 { name="metagear"; version="0.3"; sha256="0xhaqpyhix7akk4vmb1zxi69g1j7c2h8d5fk547qfx7nqaiwzh53"; depends=[EBImage gWidgets gWidgetsRGtk2 hexView MASS Matrix metafor RCurl stringr]; }; metagen = derive2 { name="metagen"; version="1.0"; sha256="0jvbm22976aqvmfnjzs51n2w099yj5hpx6hd0pgvbia80jk7b9vk"; depends=[BatchExperiments BatchJobs BBmisc ggplot2 lhs MASS metafor ParamHelpers plyr]; }; - metaheur = derive2 { name="metaheur"; version="0.1.0"; sha256="0bdvfa6y6w8ybdnr0h414bzikkrdp4g5mrcsprzhxwim96j8imh6"; depends=[ggplot2 preprocomb reshape2]; }; + metaheur = derive2 { name="metaheur"; version="0.2.0"; sha256="1rr5mjx3v87alj7cl9hxldvhhbpkz1fzmymmkqv0hs65pny6gbqw"; depends=[doParallel foreach ggplot2 preprocomb reshape2]; }; metamisc = derive2 { name="metamisc"; version="0.1.1"; sha256="1cvlsix3b857xdw6anqhqsrfwxpnf4rbzg4ybf6aw7vcdc05zgwd"; depends=[bbmle coda ellipse mvtnorm rjags]; }; - metansue = derive2 { name="metansue"; version="1.0"; sha256="1vcyvvysfz9frdy35g3p2hvndcdd4dk7kccwsgwzl7sl6ag73596"; depends=[]; }; - metap = derive2 { name="metap"; version="0.6-2"; sha256="1j0k3pxr7qsmn4ldnl650nqv0si6l67gm4shx9mpswgsbpg3wkx4"; depends=[]; }; - metaplus = derive2 { name="metaplus"; version="0.7-6"; sha256="15rngr7ckrykdzad46vanpmgsid14q574357i02pq8rqylk4s4h5"; depends=[bbmle boot fastGHQuad lme4 MASS metafor numDeriv]; }; - metasens = derive2 { name="metasens"; version="0.3-0"; sha256="1j955p5i116ggvd6nk0dp6r8qc0nh7v1iv48vaz7dds4m951lzyv"; depends=[meta]; }; + metansue = derive2 { name="metansue"; version="1.2"; sha256="0gcysmi4lvl4496vygc7v58pd4sgz013mr8nqb870s861jwjj31v"; depends=[]; }; + metap = derive2 { name="metap"; version="0.8"; sha256="06ny9zkilawdy0s8yiwhnygs3yppw89bbyf76zgdavykbzscz5lh"; depends=[lattice]; }; + metaplotr = derive2 { name="metaplotr"; version="0.0.3"; sha256="01iala6cxsxv30fnlh80md5mpy3ksd2piw90zcls8f68g1c6v1jy"; depends=[ggplot2 gridExtra]; }; + metaplus = derive2 { name="metaplus"; version="0.7-9"; sha256="1hrczccszx9jcgifwg6wsigsbm8ih4xjr00knb0rxyygijk38c82"; depends=[bbmle boot fastGHQuad lme4 MASS metafor numDeriv]; }; + metasens = derive2 { name="metasens"; version="0.3-1"; sha256="0nxvllfa2x6v2hpgind5xr0i40wi7cpdd18lwgy9s4jpgbn0n17p"; depends=[meta]; }; metatest = derive2 { name="metatest"; version="1.0-4"; sha256="0bz6gg2n4ffkr144jxk27y24xpqhp8awr09wkaijmv8902qx6qah"; depends=[]; }; - meteR = derive2 { name="meteR"; version="1.1"; sha256="0b41a6v7w3n06dyz81v5zhh1ncqx3lascdl5lrwbdjxypcdjv0cf"; depends=[distr nleqslv]; }; + metavcov = derive2 { name="metavcov"; version="0.1"; sha256="0d57gn802cnpmvyxkczmqafllglzgw17jn4rpj659s16qh0fz4j2"; depends=[corpcor]; }; + metaviz = derive2 { name="metaviz"; version="0.1.0"; sha256="1cl44dvd625sfz906cggrj092bxy35vsiglalsay9frsi440d82p"; depends=[ggplot2 plyr RColorBrewer]; }; + meteR = derive2 { name="meteR"; version="1.2"; sha256="02637d3dnfq0jv9d74y99x7ms89y3jcmkpazc44g44sa7jx4i510"; depends=[distr nleqslv]; }; meteo = derive2 { name="meteo"; version="0.1-5"; sha256="0n37plka9vsxwd03lca3h6m8dcz3f1bi46jn3bz7vyilnkq9hcdk"; depends=[gstat plyr raster rgdal snowfall sp spacetime]; }; - meteoForecast = derive2 { name="meteoForecast"; version="0.49"; sha256="0h3qb7srfmv4bl207arz6x3q64bh5pb0pc49lgrnplcjwwxk78bs"; depends=[raster sp XML zoo]; }; + meteoForecast = derive2 { name="meteoForecast"; version="0.50"; sha256="19yzfvaj4h5l70j54nlivq5dvp5psp43y5d2l978ai6pwvmi291a"; depends=[ncdf4 raster sp XML zoo]; }; meteogRam = derive2 { name="meteogRam"; version="1.0"; sha256="167gyxjnl4dyfqs3znv8sdpkvpqdxzdqi1g730s30gycrm9snap9"; depends=[ggplot2 RadioSonde]; }; + meteoland = derive2 { name="meteoland"; version="0.5.2"; sha256="17sfi14q5cp74cmlvhbyg6xlpiw9ssqc4kp48r41allk38dfk1zd"; depends=[curl ncdf4 ncdf4_helpers qmap Rcpp rgdal sp spdep]; }; + metricTester = derive2 { name="metricTester"; version="1.3.2"; sha256="1n64l69w5skbymizm5ghq50gwhpasyk9zmywib6hkd9k5ijgayv5"; depends=[ape doParallel dplyr foreach geiger MASS picante plotrix spacodiR]; }; metricsgraphics = derive2 { name="metricsgraphics"; version="0.9.0"; sha256="1zbx82b34y0rr4w7rzvyc1nzk95w6cdkg0j1kkshbmkvplq6v9i4"; depends=[htmltools htmlwidgets magrittr]; }; - mets = derive2 { name="mets"; version="1.1.1"; sha256="1myqcds9glsy3fwzr7v711xzk7gmvy2cb4x3qgj1kxa90d1d50hz"; depends=[lava numDeriv Rcpp RcppArmadillo survival timereg]; }; - mev = derive2 { name="mev"; version="1.6.1"; sha256="09n6vhga6h4k3iqwxrbr9ba2jh8rwnydsnrgq61iwndz0bqd24ig"; depends=[evd ismev Rcpp RcppArmadillo]; }; + mets = derive2 { name="mets"; version="1.2"; sha256="078g04bj3ipwz3cw5wkz0gvj1dmd5vxygkwpz4pymg0r9svy2yf2"; depends=[lava numDeriv Rcpp RcppArmadillo survival timereg]; }; + mev = derive2 { name="mev"; version="1.10"; sha256="0kidgghwjc81rx2vb8y1iiwvlfxafv7r11n3zz1gb7705w6ynw1m"; depends=[boot evd gmm ismev nleqslv numDeriv Rcpp RcppArmadillo rootSolve]; }; mewAvg = derive2 { name="mewAvg"; version="0.3.0"; sha256="16gc78ccjffp9qgc7rs622jql54ij83ygvph3hz19wpk22m96glm"; depends=[]; }; + mexhaz = derive2 { name="mexhaz"; version="1.1"; sha256="168a8b3y17nh2dalqanph384laf2awv3jdk8dm9cl5jbkh7ah4lb"; depends=[MASS statmod survival]; }; + mfe = derive2 { name="mfe"; version="0.1.0"; sha256="06x6csf3pr1vdmmimg6f7iffrivj8wcdfafvld7nrzbkl09cbfbn"; depends=[C50 class e1071 infotheo MASS rpart]; }; mfp = derive2 { name="mfp"; version="1.5.2"; sha256="1i90ggbyk2p1ym7xvbf4rhyl51kmfp6ibc1dnmphgw15wy56y97a"; depends=[survival]; }; mfx = derive2 { name="mfx"; version="1.1"; sha256="1zhpk38k7vdq0pyqi1s858ns19qycs3nznpa00yv8sz9n798wnn5"; depends=[betareg lmtest MASS sandwich]; }; - mgcv = derive2 { name="mgcv"; version="1.8-12"; sha256="1khzy36nn6xbnzqfc2953ng0sv8w91mns1ymhibaqn1150x1qid0"; depends=[Matrix nlme]; }; + mgarchBEKK = derive2 { name="mgarchBEKK"; version="0.0.2"; sha256="1k4c34srnckbh5kchzmm44l91ma9sw0gi4y225igs3cl79212q9c"; depends=[mvtnorm tseries]; }; + mgcv = derive2 { name="mgcv"; version="1.8-17"; sha256="1zj223l4a3j15d3c01wv7dkzn9w6084gxrq5600ck9rvr0lfpwwg"; depends=[Matrix nlme]; }; + mglR = derive2 { name="mglR"; version="0.1.0"; sha256="1b7nd913d4a1szgw2qnhlnjqhfxr95xag6jwjcb2wnnxd12lib7n"; depends=[biomaRt dplyr gdata ggplot2 gplots magrittr stringr]; }; mglmn = derive2 { name="mglmn"; version="0.0.2"; sha256="1ijkmr85s4yya0hfwcyqqskbprnkcbq8sc9c889i0gy0543fgqz4"; depends=[mvabund snowfall]; }; - mgm = derive2 { name="mgm"; version="1.1-4"; sha256="02m1ihi9m9x9m0jqwgp67k9f9lnq76cskx77wxzy69nbl1d91xh7"; depends=[glmnet matrixcalc Rcpp]; }; + mgm = derive2 { name="mgm"; version="1.1-7"; sha256="01srb1fb3ndfh1jimrdvf35g3f25jddij0sdi3n2d7gm4x8s0h24"; depends=[glmnet matrixcalc Rcpp]; }; mgpd = derive2 { name="mgpd"; version="1.99"; sha256="0cxpgza9i0hjm5w1i5crzlgh740v143120zwjn95cav8pk8n2wyb"; depends=[corpcor evd fields numDeriv]; }; mgraph = derive2 { name="mgraph"; version="1.03"; sha256="0av2c0jvqsdfb3i0s0498wcms0n2mm0z3nnl98mx2fy7wz34z8b2"; depends=[rgdal]; }; mhde = derive2 { name="mhde"; version="1.0-1"; sha256="1q7lbj2is024f5rmfpdn3a0hsb78bf62ddal3chhnh3bi1z3jrjk"; depends=[]; }; - mhsmm = derive2 { name="mhsmm"; version="0.4.14"; sha256="1zrqnzbmlk3kmwbq9rl4bdkc9iawkgn3qr7nzsa782v55i7w2wiz"; depends=[mvtnorm]; }; + mhsmm = derive2 { name="mhsmm"; version="0.4.16"; sha256="009dj0zkj1zry7jr9hf4cknb686z50a2l967if64xm0dvjmp7dgs"; depends=[mvtnorm]; }; mht = derive2 { name="mht"; version="3.1.2"; sha256="01zcaf9k0qayzm8dn5dvnm5n3qgqpj8r96qhqaa5vbjcr6ci2x2r"; depends=[glmnet Matrix]; }; - mhurdle = derive2 { name="mhurdle"; version="1.0-1"; sha256="1x631fgbq3ika05svyavzadyjd7vi9bcmsgb58wfhpf9xq6j5rcr"; depends=[Formula maxLik pbivnorm truncreg]; }; + mhtboot = derive2 { name="mhtboot"; version="1.3.3"; sha256="1z0p8ny9lpnrshgas7cad2lv7j0blw0n6ihiimw600n70h73jwrn"; depends=[ggplot2 reshape2]; }; + mhurdle = derive2 { name="mhurdle"; version="1.1-7"; sha256="06ph0vbm7yk5388v2aww6nmi2rhjhfjj1hl506a41m5k6hf746pk"; depends=[Formula maxLik survival texreg truncreg]; }; mi = derive2 { name="mi"; version="1.0"; sha256="1h47k5mpbvhid83277dvvj2di493bgzz9iarpyv3r30y219l7x1l"; depends=[arm Matrix]; }; miCoPTCM = derive2 { name="miCoPTCM"; version="1.0"; sha256="1lmf6zahfp59ylhdp2cbr7y3vayhim72zazimg4qfld4r9d6kygc"; depends=[distr MASS nleqslv survival]; }; miRada = derive2 { name="miRada"; version="1.13.8-8"; sha256="1m6rm65pv4r16r0s5ih69nr3v2rnpsvpdpk07pi7k4f7v9wck71v"; depends=[]; }; @@ -5456,95 +6813,113 @@ in with self; { micEconAids = derive2 { name="micEconAids"; version="0.6-16"; sha256="07hsabrlkwpdaalh0b7izraz2q5dlxn373ccijc5c4zsrkgk7kij"; depends=[lmtest micEcon miscTools systemfit]; }; micEconCES = derive2 { name="micEconCES"; version="0.9-8"; sha256="06g6z8hf7y9d942w6gya0fd5aidzfjkx3280gjygdlwpv7nlpqzv"; depends=[car DEoptim micEcon minpack_lm miscTools systemfit]; }; micEconSNQP = derive2 { name="micEconSNQP"; version="0.6-6"; sha256="1n3pxapc90iz1w3plaqflayd0b1jqd65yw5nbbm9xz0ih132dby9"; depends=[MASS miscTools systemfit]; }; - mice = derive2 { name="mice"; version="2.25"; sha256="1c6xjvqy3w5lqbs4k22vb3x3an4ss22zpp2zigwhnm1y9mphg06x"; depends=[lattice MASS nnet Rcpp rpart survival]; }; - miceadds = derive2 { name="miceadds"; version="1.7-8"; sha256="0f7vh96q9xp9v5hbb15bvm3825kl51zz582rd98d4kgd7nk4896a"; depends=[bayesm car foreign grouped Hmisc inline lme4 MASS MBESS MCMCglmm mice mitools multiwayvcov mvtnorm pls Rcpp RcppArmadillo sirt sjmisc TAM]; }; + mice = derive2 { name="mice"; version="2.30"; sha256="1r673x51vs3w7kz4bkp2rih4445hcmajw86gjwz7m2piajwvs817"; depends=[lattice MASS nnet Rcpp rpart survival]; }; + miceadds = derive2 { name="miceadds"; version="2.3-0"; sha256="0jmj5zrggbyp5yaqn96naicfm6ajir3ybs9j1028vxdj2wyapz13"; depends=[blme car CDM foreign grouped lme4 MASS MCMCglmm mice mitools multiwayvcov mvtnorm Rcpp RcppArmadillo sirt sjmisc TAM]; }; + micompr = derive2 { name="micompr"; version="1.0.1"; sha256="1380x9jp5lpc6n6bjvhmkwlb59ch7q59r3bc6f0i5j2kpaairbc4"; depends=[]; }; microbats = derive2 { name="microbats"; version="0.1-1"; sha256="1mahvblaiwg1xk2s34wd1ic8ddc9lh6g0azik2pd97bsf0krkyw8"; depends=[]; }; microbenchmark = derive2 { name="microbenchmark"; version="1.4-2.1"; sha256="0qn5r1a6qidghcisc2hpbdmj62pnixc3zz6p4ipk8mvakf0hdsvg"; depends=[ggplot2]; }; + microclass = derive2 { name="microclass"; version="1.1"; sha256="0hl2s4135k187f0vqmj9snvmnwa5k9fg8ahivfs7ciknrcxfv3nk"; depends=[microcontax microseq Rcpp RcppEigen RcppParallel]; }; + microcontax = derive2 { name="microcontax"; version="1.0"; sha256="0l5mfgda5xagjbh9bwv328k3m7kgggdm90rc8fr1ic59hvg56f3g"; depends=[microseq]; }; micromap = derive2 { name="micromap"; version="1.9.2"; sha256="1x4v0ibbpfz471dp46agib27i4svs8wyy93ldriryvhpa2w5948y"; depends=[ggplot2 maptools RColorBrewer rgdal sp]; }; - micromapST = derive2 { name="micromapST"; version="1.0.5"; sha256="1n9mzyl5dj21165j0j99brkqq7c54j3cg6r21ifdzffj2dx29wh0"; depends=[RColorBrewer]; }; - micropan = derive2 { name="micropan"; version="1.0"; sha256="0qnxm6z2pk1wibchj6rhn3hld77dzl5qgvzl4v9n16ywlgdv09ai"; depends=[igraph]; }; - midasr = derive2 { name="midasr"; version="0.5"; sha256="1w3rxsxkcjy30sjxv4cxvqzfw7k278s6mrrjm4pbz7cydbiws2vp"; depends=[forecast MASS Matrix numDeriv optimx sandwich]; }; + micromapST = derive2 { name="micromapST"; version="1.1.1"; sha256="15ch132x3wnpf7rmy25nah7iyfxfk90p7lvavqjhrnavhjsfxbxx"; depends=[labeling RColorBrewer stringr]; }; + micropan = derive2 { name="micropan"; version="1.1.2"; sha256="0rvaampr5vlpz253lhy330380646g2vqj1hqp6gsk0gp0hdlkd7g"; depends=[igraph microseq]; }; + microplot = derive2 { name="microplot"; version="1.0-16"; sha256="144rj86lkjkmwlqwlwmnagvlknhg0wg92kabpfpz2w0swfhfa742"; depends=[Hmisc]; }; + microseq = derive2 { name="microseq"; version="1.2"; sha256="14w1fycw0jgrc5g0ygks9j28hy37li057qf097qnp18w05jk3hws"; depends=[Rcpp]; }; + midasr = derive2 { name="midasr"; version="0.6"; sha256="1sg6m36jg3b6znfg97ln5a6b4z36xkyjvgxk7wmqdq3h528z8613"; depends=[forecast MASS Matrix numDeriv optimx sandwich]; }; midastouch = derive2 { name="midastouch"; version="1.3"; sha256="1pjzcf0hjfhr5p0la8pz1njw7bhfrcrzpqfsdqk2z5c6dbh4awzq"; depends=[]; }; - midrangeMCP = derive2 { name="midrangeMCP"; version="1.1"; sha256="0ripx7ydvbs3b5g6k2q7nnmrzq9i1wfa6whc536q5wimfd0gzlkg"; depends=[SMR WriteXLS xtable]; }; - migest = derive2 { name="migest"; version="1.7.1"; sha256="0xxca4ww13ml4pvdc688pp7vikwgyp8mz5czw896mh37z8lhdvvj"; depends=[]; }; + midrangeMCP = derive2 { name="midrangeMCP"; version="1.3"; sha256="1733dlhzbgrjdzd88rh9dkqhxh05gr078sbmihab7whbrpsq8068"; depends=[SMR WriteXLS xtable]; }; + migest = derive2 { name="migest"; version="1.7.3"; sha256="1g49b4fa2974w8alb97k06k3zi49q66n16cvcbqdaj9j21c9qfmy"; depends=[]; }; migration_indices = derive2 { name="migration.indices"; version="0.3.0"; sha256="0h0yjcj70wzpgrv3wl1f2h2wangh1klsllq0i0935plgzw736mwd"; depends=[calibrate]; }; migui = derive2 { name="migui"; version="1.1"; sha256="1qchjsc7ff2b6s9w6ncj9knjv6pyp90jd4jxljn2rr1ix1gc45za"; depends=[arm gWidgets2 mi]; }; - mime = derive2 { name="mime"; version="0.4"; sha256="145cdcg252w2zsq67dmvmsqka60msfp7agymlxs3gl3ihgiwg46p"; depends=[]; }; + milonga = derive2 { name="milonga"; version="1.0"; sha256="1pkmh1mabqag38xzw2s86x9c6pr83wlmh4f45s7km5g0j1zllrd9"; depends=[MCMCpack]; }; + milr = derive2 { name="milr"; version="0.2.0"; sha256="1fhpnibs99045fcphydgdh7mdbpclbskbb74zlvhpbr6q8hh70hd"; depends=[assertthat glmnet numDeriv pipeR purrr Rcpp RcppArmadillo]; }; + mime = derive2 { name="mime"; version="0.5"; sha256="0i91m3ivaja1k33jwcvz16pfjypkci27awm8glil7sxhmwaj3izw"; depends=[]; }; minPtest = derive2 { name="minPtest"; version="1.7"; sha256="088kckpbfy2yp0pk3zrixrimywrvkaib5ywa7fkr5phnzlsl80sv"; depends=[Epi scrime]; }; minerva = derive2 { name="minerva"; version="1.4.5"; sha256="0k6hyfh1lr345718vl1ssqgm5567nylk158awygmbjgkv8g8v2av"; depends=[]; }; - miniCRAN = derive2 { name="miniCRAN"; version="0.2.4"; sha256="1p8kypq0r4sckvdq7qfznfjp3mpjy3cvm9dnwpdfn4dnl4n377z0"; depends=[httr XML]; }; + miniCRAN = derive2 { name="miniCRAN"; version="0.2.7"; sha256="0ijvsc0aqhcyy5fmxjh7ks4f40l5hm3p485x80a475bmjrh9g15w"; depends=[httr XML]; }; miniGUI = derive2 { name="miniGUI"; version="0.8.0"; sha256="1iq52x7wbcin7ya207jj3k9vym7mavm5z61vggyabdmr768pci39"; depends=[]; }; miniUI = derive2 { name="miniUI"; version="0.1.1"; sha256="1qfca55phw6614qh5ligvqawpyvpb08x7ky44sffwxgff4h074lw"; depends=[htmltools shiny]; }; + minimalRSD = derive2 { name="minimalRSD"; version="1.0.0"; sha256="1p1jpi8lnv952k4c1wjgbgpb0hv4zg0f9qrd43cx0caibkqvhzf7"; depends=[]; }; minimap = derive2 { name="minimap"; version="0.1.0"; sha256="0y5yzic9pwpzs01gnl82syankijcjp85n22jn5zda0bp3y01r53r"; depends=[]; }; minimax = derive2 { name="minimax"; version="1.0"; sha256="1g0d9q5h1avbb0yg7ajw5330820i3n5cgkpsif754l4j3ikya8p3"; depends=[]; }; + minimaxdesign = derive2 { name="minimaxdesign"; version="0.1.1"; sha256="0rclwfqpj262krghjcmq79fb2m2syb39jxk048ll98a58bz103dp"; depends=[DiceDesign doParallel doSNOW foreach gtools MaxPro nloptr randtoolbox Rcpp RcppArmadillo]; }; minimist = derive2 { name="minimist"; version="0.1"; sha256="007y829d766b1v6wkrhk7pkg99r38bvmhc8bwvs8rs13dr7444ln"; depends=[V8]; }; - minpack_lm = derive2 { name="minpack.lm"; version="1.2-0"; sha256="0h8grkwkm2w0jl9fl5kma3b6p1n76gm42qbsyrnhr7pwsxx4qwgr"; depends=[]; }; + minpack_lm = derive2 { name="minpack.lm"; version="1.2-1"; sha256="18ym2pdql5vzngc7q5gn66d153hrfrnd8ilv8yh6vd7j7sx7vjql"; depends=[]; }; minqa = derive2 { name="minqa"; version="1.2.4"; sha256="036drja6xz7awja9iwb76x91415p26fb0jmg7y7v0p65m6j978fg"; depends=[Rcpp]; }; minque = derive2 { name="minque"; version="1.1"; sha256="1hx4j38213hs8lssf9kj5s423imk7dzv60mdbzrpbp7la7jk2n57"; depends=[klaR Matrix]; }; - minval = derive2 { name="minval"; version="0.2"; sha256="1hjj24vpnva130bfxn8dczhfn30rcgichi25y77rgaw3z58hm39n"; depends=[]; }; + minval = derive2 { name="minval"; version="0.5"; sha256="1pbcfcaysaicppkzvnllvvx2jykc17nk3331n0rl41x56jxcjsgd"; depends=[gdata XML]; }; minxent = derive2 { name="minxent"; version="0.01"; sha256="1a0kak4ff1mnpvc9arr3sihp4adialnxxyaacdgmwpw61wgcir7h"; depends=[]; }; - mipfp = derive2 { name="mipfp"; version="2.2.1"; sha256="0i69pbwszwqgc7wyfvnwgbp73dw0vg0pf692wyiwjkqvyfdrqa40"; depends=[cmm numDeriv Rsolnp]; }; - mirt = derive2 { name="mirt"; version="1.16"; sha256="1lafpm7fizvvyv2f5gyabj1chl0vdf3q0bv77swz2cxjvlznc9aw"; depends=[GPArotation lattice mgcv numDeriv Rcpp RcppArmadillo sfsmisc]; }; - mirtCAT = derive2 { name="mirtCAT"; version="0.8"; sha256="077pcirvvvqh0fsgna5r4dhqvyfv8hp7bfn6c8cgfi8wgbisa634"; depends=[lattice markdown mirt Rcpp RcppArmadillo shiny]; }; + mipfp = derive2 { name="mipfp"; version="3.1"; sha256="18cfv8s38cd0g1wc5pry6a4m2ykqflkxhqbqnjbjvmr42bj3r6sp"; depends=[cmm numDeriv Rsolnp]; }; + mirt = derive2 { name="mirt"; version="1.22"; sha256="0jzxmj2a0kq0xylsxrkd6j9rzvy3y0qkl823pb84mc3zv2jwnjrx"; depends=[GPArotation lattice mgcv numDeriv Rcpp RcppArmadillo sfsmisc]; }; + mirtCAT = derive2 { name="mirtCAT"; version="1.3"; sha256="00zmli79ll313qjjl0j28ibxdjn41zfgwx43cg9mzzm6ayiz26ci"; depends=[lattice lpSolve markdown mirt pbapply Rcpp RcppArmadillo shiny]; }; misc3d = derive2 { name="misc3d"; version="0.8-4"; sha256="0qjzpw3h09qi2gfz52b7nhzd95p7yyxsd03fldc9wzzn6wi3vpkm"; depends=[]; }; - miscF = derive2 { name="miscF"; version="0.1-2"; sha256="195rb9acdirfhap0z35yvcci5xn4j84mlbafki4l1vfgqgnh0ajj"; depends=[MCMCpack mvtnorm Rcpp RcppArmadillo]; }; - miscFuncs = derive2 { name="miscFuncs"; version="1.2-7"; sha256="1cnhd23fi6akr3fsr2b85s5cn36ksy4h3c4iyyjqcpc49wa819d0"; depends=[mvtnorm roxygen2]; }; - miscTools = derive2 { name="miscTools"; version="0.6-16"; sha256="19mslb64lm8srrmml1v40rfkxhqw02bplw0yjv7qnkqj44hcqfw1"; depends=[]; }; + miscF = derive2 { name="miscF"; version="0.1-3"; sha256="1djmsffwkicj25ndg07dnid6qj66b1rdw0yrv79jakjfbv71c13i"; depends=[BayesBridge BRugs MASS MCMCpack mvtnorm R2jags Rcpp RcppArmadillo]; }; + miscFuncs = derive2 { name="miscFuncs"; version="1.2-10"; sha256="1kqya581n76ff9avhj6xm6nwsbw7zlm4mwy0vyvdlqlf7c381qq0"; depends=[mvtnorm roxygen2]; }; + miscTools = derive2 { name="miscTools"; version="0.6-22"; sha256="1sngkl5rwg1vp2xx9a5g2nz2nhwxwv7ni21ww7hyjc8x5mhb42yh"; depends=[]; }; + misclassGLM = derive2 { name="misclassGLM"; version="0.2.0"; sha256="1dz36q2gl0q8d0s2rxn28b8ykw31wcdxf91s7ypmjggfdj64i8br"; depends=[bigmemory foreach MASS Matrix mlogit numDeriv ucminf]; }; + miscor = derive2 { name="miscor"; version="0.1-0"; sha256="0kgdsqcqdfi7976qc2f2r6z68z6znrgwgcr801cfkqql8s0wksfj"; depends=[PoisNonNor]; }; miscset = derive2 { name="miscset"; version="1.0.0"; sha256="0m6gv2w8fj1604wrmcdgz6dpmpkz7j3sppda11klsx0hv1xqr2af"; depends=[ggplot2 gridExtra Rcpp xtable]; }; - missDeaths = derive2 { name="missDeaths"; version="1.2"; sha256="0lamxws1qqafz1mqdrzmq6jjn490z8zd63w4mzyb5nwwlxbmy6v8"; depends=[cmprsk mitools Rcpp relsurv rms survival]; }; + mise = derive2 { name="mise"; version="0.1.0"; sha256="1ydbm76w3y0p5h82shxjblwlzbrmzwx0bgq9w2axjwz2nx8jfw0a"; depends=[]; }; + misreport = derive2 { name="misreport"; version="0.1.0"; sha256="1nys59bik6cnrpdh1azp2y9k201y326hbf5jzv2kilh34p57ilfs"; depends=[mvtnorm numDeriv VGAM]; }; + missDeaths = derive2 { name="missDeaths"; version="2.2"; sha256="0gkzq7jpqkfcvc40i0xdjxmwmn1mpd7p4hik4fqz22q3pvmhmmwn"; depends=[cmprsk MASS mitools Rcpp relsurv rms survival]; }; missForest = derive2 { name="missForest"; version="1.4"; sha256="0y02dhrbcx10hfkakg5ysr3kpyrsh2d9i5b0qzhj9x5x0d5q11gp"; depends=[foreach itertools randomForest]; }; - missMDA = derive2 { name="missMDA"; version="1.9"; sha256="1g8b37cjaya1g5hkqwjgamnh4jfsqw90453yxh3jnvdw7irl4vsm"; depends=[FactoMineR mice mvtnorm]; }; - mistat = derive2 { name="mistat"; version="1.0-3"; sha256="12fykqkcqfxn8m8wwpw69f7h2f24c5yhg4fw50jsifhcj40kk29q"; depends=[]; }; - mistral = derive2 { name="mistral"; version="2.0.1"; sha256="037jp2p8h29by5a1gmm6irlsgz72rqi4zfbfjhk1c1gfk2fr3dfb"; depends=[DiceKriging doParallel e1071 emoa foreach ggplot2 iterators Matrix mvtnorm quadprog]; }; - mitml = derive2 { name="mitml"; version="0.3-0"; sha256="1vk2y48mcvm6f7vr4m8y726ygi8d1zf70jz6yy8i91gzakmsrr4x"; depends=[haven jomo pan]; }; + missMDA = derive2 { name="missMDA"; version="1.10"; sha256="1wqb5badqcs6yj2c7llbhbssdzg0irjzfcjasfrq1zg0lk82zafj"; depends=[FactoMineR mice mvtnorm]; }; + mistat = derive2 { name="mistat"; version="1.0-4"; sha256="0gzng0kl3handy3k7g62c4sdcf9l6x0b69jxmfrwfd4297f57n9n"; depends=[]; }; + mistral = derive2 { name="mistral"; version="2.1.0"; sha256="1cr79p8q82lpj9d0y6q24xmfkxmnlqv8ivkd0baj7fxfb1nb8sak"; depends=[DiceKriging doParallel e1071 emoa foreach ggplot2 iterators Matrix mvtnorm quadprog]; }; + mitml = derive2 { name="mitml"; version="0.3-4"; sha256="0lwy87f0v43i6fpbhl85vg9x5mvll8bllcm6q2qj06nk7yy25573"; depends=[haven jomo pan]; }; mitools = derive2 { name="mitools"; version="2.3"; sha256="0w76zcl8mfgd7d4njhh0k473hagf9ndcadnnjd35c94ym98jja33"; depends=[]; }; mix = derive2 { name="mix"; version="1.0-9"; sha256="08729y6ih3yixcc4a6m8fszg6pjc0s02iq47339b9gj16p82b74z"; depends=[]; }; - mixAK = derive2 { name="mixAK"; version="4.2"; sha256="0z96ddlvkpr4y2chi929ik81snsr0f03a0k4cnh0q1lx0lr51p1z"; depends=[coda colorspace fastGHQuad lme4 mnormt]; }; - mixOmics = derive2 { name="mixOmics"; version="5.2.0"; sha256="0s7g09b0pdfzc255sicpvkac2c28yhvipf6284qbpgrr80qc9s5p"; depends=[corpcor ellipse ggplot2 igraph lattice MASS rgl]; }; + mixAK = derive2 { name="mixAK"; version="4.4"; sha256="0aj1x80kxwksn7as6lfncl6ar218hnbcs8vbxwiqp1lh4il74iiq"; depends=[coda colorspace fastGHQuad lme4 mnormt]; }; + mixOmics = derive2 { name="mixOmics"; version="6.1.1"; sha256="0wdl5g0455whlf331j77c0d9vk6qyb03basy5b7svz3zrg15q2qa"; depends=[corpcor dplyr ellipse ggplot2 igraph lattice MASS plyr RColorBrewer reshape2 rgl tidyr]; }; mixPHM = derive2 { name="mixPHM"; version="0.7-2"; sha256="1wvkdb9zj2j8dpppnyins05rg877zbydqsl3qaan62wznkknxcac"; depends=[lattice survival]; }; mixRasch = derive2 { name="mixRasch"; version="1.1"; sha256="1r067pv7b54y1bz8p496wxv4by96dxfi2n1c99gziqf5ramx3qzp"; depends=[]; }; mixcat = derive2 { name="mixcat"; version="1.0-3"; sha256="0xszngygd3yj61pvv6jrrb5j0sxgpxzhlic69xrd5mv5iyw0cmxd"; depends=[statmod]; }; mixdist = derive2 { name="mixdist"; version="0.5-4"; sha256="100i9mb930mzvdha31m1srylmpa64wxyjv6pkw1g5lhm1hsclwm3"; depends=[]; }; mixedMem = derive2 { name="mixedMem"; version="1.1.0"; sha256="0j8w3qfhanyrkkxipdxfdajv15qba8r2rm06iiv3kywficzgkxgv"; depends=[BH gtools Rcpp RcppArmadillo]; }; + mixedsde = derive2 { name="mixedsde"; version="2.0"; sha256="04ljpy2vyqyin9b1zn0awp43c33ch6zsgdrp6whii1ql9pcinkcl"; depends=[MASS moments plot3D sde]; }; mixer = derive2 { name="mixer"; version="1.8"; sha256="1r831jha7qrxibw5m3nc3l6r887ihzxzsj65yjnbl5cf5b8y19bb"; depends=[]; }; - mixexp = derive2 { name="mixexp"; version="1.2.3"; sha256="1cywqqiap4czni2jlcfyh6l6sn6v6wb2bzkfavbg2h6f5xc3ljnn"; depends=[daewr gdata lattice]; }; - mixlm = derive2 { name="mixlm"; version="1.1.1"; sha256="1ffrkfksli9zwk5cdjc1q7xqvmwbpkxjbzrbpvj1ays9yrhvgkxb"; depends=[car leaps lme4 multcomp pls pracma]; }; + mixexp = derive2 { name="mixexp"; version="1.2.5"; sha256="0nbf10xhrr51rb1b2apcj4p3ci8xbi7flgz500ar3mxh8h8l74sq"; depends=[daewr gdata lattice]; }; + mixlink = derive2 { name="mixlink"; version="0.1.4"; sha256="138q48k9bz7dc18fdi6g7ra10b08avwa7xnvw7i8f1fdjk6h2zpc"; depends=[mvtnorm numDeriv Rcpp RcppGSL]; }; + mixlm = derive2 { name="mixlm"; version="1.1.5"; sha256="17ph8a7p9jq7529vvbxb77m6hwscwgamzsm6a9v71cvqkvc5lkmr"; depends=[car leaps lme4 multcomp pls pracma]; }; mixor = derive2 { name="mixor"; version="1.0.3"; sha256="1qnrfd0hggad81rn8ryfm9l0cpd59ifj9sxc1bav35bma535azdv"; depends=[]; }; - mixpack = derive2 { name="mixpack"; version="0.3.4"; sha256="0d28yxxm8rcb8l9nzpaviz4gxm690f88d3z21sc3qg02qdh3xqk0"; depends=[mvtnorm Rcpp RcppArmadillo]; }; + mixpack = derive2 { name="mixpack"; version="0.3.6"; sha256="0q19mal86qlriwilabgy3sn33iymi5hl3wa33kvb8cd1dgdmjr7a"; depends=[mvtnorm Rcpp RcppArmadillo]; }; mixreg = derive2 { name="mixreg"; version="0.0-5"; sha256="0wsb1z98ymhshw9nhsvlszsanflxv3alwpdsw8lr3v62bkwka8zr"; depends=[]; }; mixsep = derive2 { name="mixsep"; version="0.2.1-2"; sha256="1ywwag02wbx3pkd7h0j9aab44bdmwsaaz0p2pcqn1fs3cpw35wa2"; depends=[MASS RODBC tcltk2]; }; - mixsmsn = derive2 { name="mixsmsn"; version="1.1-1"; sha256="0n2iib0kpnsgz2k761myjqy2zsw0yrygpamxgm90cvngvxvkmkhc"; depends=[mvtnorm]; }; + mixsmsn = derive2 { name="mixsmsn"; version="1.1-2"; sha256="02hincq7bflmyvdahjmkcdpr6vwxjw5hrbvld38riwv2kw4wmn4l"; depends=[mvtnorm]; }; mixtNB = derive2 { name="mixtNB"; version="1.0"; sha256="0lqbm1yl54zfs0xcmf3f2vcg78rsqyzlgvpydhmhg7x6dkissb22"; depends=[]; }; mixtools = derive2 { name="mixtools"; version="1.0.4"; sha256="133rr17ywmlhsc6457hs8qxi8ng443ql9ashxpwc8875gjhv1x32"; depends=[boot MASS segmented]; }; - mixtox = derive2 { name="mixtox"; version="1.2"; sha256="0yw3zvgxmrwcnps9zws87z9p4jk8gblr0giwh9298ngpcv4dd3rs"; depends=[nls2]; }; + mixtox = derive2 { name="mixtox"; version="1.3.2"; sha256="0mdnp1yrcxvan5l7jj91s41vq5y1kdnkhhinqrklmg4ph5f29dmq"; depends=[minpack_lm]; }; mixture = derive2 { name="mixture"; version="1.4"; sha256="0k9pzcgfjyp0rmcma26kr2n8rcwmijznmdpvqidgl3jay20c87ca"; depends=[]; }; mizer = derive2 { name="mizer"; version="0.2"; sha256="0cpal9lrjbvc923h499hbv4pqw3yjd4jvvhgayxgkak2lz2jzmcz"; depends=[ggplot2 plyr reshape2]; }; mkde = derive2 { name="mkde"; version="0.1"; sha256="04v84arpnmjrkk88ffphnhkz32x7y0dypk75jfmbbgcgv59xlglv"; depends=[raster Rcpp sp]; }; - mkin = derive2 { name="mkin"; version="0.9-41"; sha256="02vndwaypvc61zry3w7s8av53ha1bkb19rgkm235znh16sgjdwbd"; depends=[deSolve FME inline minpack_lm R6 rootSolve]; }; + mkin = derive2 { name="mkin"; version="0.9.45"; sha256="0p47xaxyakah4qwkymzc4qvs9i9g764laikw9vlmjyjv0j0zn9cx"; depends=[deSolve FME inline minpack_lm R6 rootSolve]; }; mkssd = derive2 { name="mkssd"; version="1.1"; sha256="1qqzy6fn6sc3lxahc19hzzf1hzxsyvxqi7npynw0vkknlrvh2ijp"; depends=[]; }; mlDNA = derive2 { name="mlDNA"; version="1.1"; sha256="0d9lydiwar98hin26slnym4svn0g1xmyn212vvzsx9lzlvs5a9k4"; depends=[e1071 igraph pROC randomForest ROCR rsgcc snowfall]; }; mlPhaser = derive2 { name="mlPhaser"; version="0.01"; sha256="1s2mqlnbcjdkx0ghvr2sw9rzggqa4jy2vzi9vbyqkh6795lgck6n"; depends=[]; }; - mlVAR = derive2 { name="mlVAR"; version="0.1.0"; sha256="0xychak3xdqnsl9z1ifi0niqsrdc10f6frl6zg162mzpil33wp3g"; depends=[arm lme4 plyr qgraph]; }; + mlVAR = derive2 { name="mlVAR"; version="0.3.2"; sha256="07jxggh5qds0b7by61m1xiyx3lxffpgzl3knk97q8fafw46dg1r4"; depends=[abind arm clusterGeneration corpcor dplyr lme4 mvtnorm plyr qgraph]; }; mlbench = derive2 { name="mlbench"; version="2.1-1"; sha256="1rp035qxfgh5ail92zjh9jh57dj0b8babw3wsg29v8ricpal30bl"; depends=[]; }; mldr = derive2 { name="mldr"; version="0.3.22"; sha256="0q5dpqx6zapawjjq8rqk112w5qsk7r6sc90y63yvllk9yhdgygyw"; depends=[circlize shiny XML]; }; mldr_datasets = derive2 { name="mldr.datasets"; version="0.3.15"; sha256="1xivwmv6hvl026c5ymc23fr36sk797dxn2wa9lp20dgh5s0cq10n"; depends=[]; }; + mle_tools = derive2 { name="mle.tools"; version="1.0.0"; sha256="02yndj1if31zr9y805mq5km5n8jz4w9jz1bmaz9nnqsqimrnigrb"; depends=[]; }; mlearning = derive2 { name="mlearning"; version="1.0-0"; sha256="0r8xfaxw83s2r27b8x5qd0k4r5ayxpkafzn9b1a0jvsr87i6520r"; depends=[class e1071 ipred MASS nnet randomForest]; }; mlegp = derive2 { name="mlegp"; version="3.1.4"; sha256="1932544irhzhf6a8rjyh66j57h9awlhwd6xam603bamfg106cmg2"; depends=[]; }; mleur = derive2 { name="mleur"; version="1.0-6"; sha256="0mddphq3b6y2jaafaa9y41842kcaqdl3dh7j4pva55q2vcjcclj7"; depends=[fGarch lattice stabledist urca]; }; mlgt = derive2 { name="mlgt"; version="0.16"; sha256="1nvdq6mvgr39ikkf73aggsb6pmbw132injj8fdkr8hgcmwm6lgd9"; depends=[seqinr]; }; mlica2 = derive2 { name="mlica2"; version="2.1"; sha256="0c3m1zd9x99n6lw12hfzmd59355z51xa8rhg1h7qwfn9p86r826f"; depends=[]; }; mlmRev = derive2 { name="mlmRev"; version="1.0-6"; sha256="0mvmahnbbp478xwldj4wlsjib4v4afhs07643gxgcqpi56zbd5h7"; depends=[lme4]; }; - mlma = derive2 { name="mlma"; version="2.0-0"; sha256="1wkkvbix1sycaxss4hy1y6k8r5wm1s38fbjis07slr8hpkvskmv6"; depends=[lme4]; }; + mlma = derive2 { name="mlma"; version="4.0-1"; sha256="0pk2h4m74r95dfkqzliixi6z1rwdfc6gbz8c3162y22m919f00vc"; depends=[car gplots lme4]; }; + mlmc = derive2 { name="mlmc"; version="1.0.0"; sha256="01h7w0ajyg3bccynlpbi3yjpy089wczbfbajpg6yw5v4dppw7k7a"; depends=[ggplot2 Rcpp]; }; mlmmm = derive2 { name="mlmmm"; version="0.3-1.2"; sha256="1m5ziiqs3ll1xjm1yf7x4sdc910jypn3kjnbadf95xxkvqmfrsqq"; depends=[]; }; mlogit = derive2 { name="mlogit"; version="0.2-4"; sha256="15ndly7i56k8blgvpn15ixxnqx9yvbci7n3mb3hm9mnrxwh5v7sx"; depends=[Formula lmtest MASS maxLik statmod zoo]; }; mlogitBMA = derive2 { name="mlogitBMA"; version="0.1-6"; sha256="1wl8ljh6rr1wx7dxmd1rq5wjbpz3426z8dpg7pkf1x9wr94a2q25"; depends=[abind BMA maxLik]; }; - mlr = derive2 { name="mlr"; version="2.8"; sha256="1826lvnz5z9j7im66m8hg6dzrjipyygylhj0whyrskjsgz98wili"; depends=[BBmisc checkmate ggplot2 ggvis parallelMap ParamHelpers plyr reshape2 shiny survival]; }; + mlr = derive2 { name="mlr"; version="2.10"; sha256="1brylz7x10wyi0k4cdh9qkjv73yz8g67ib8flzw9dcd9i15ppgbv"; depends=[backports BBmisc checkmate data_table ggplot2 parallelMap ParamHelpers stringi survival]; }; mlsjunkgen = derive2 { name="mlsjunkgen"; version="0.1.1"; sha256="109ag52x4y3rzx8yccilrnl24mz4ximzx6v4lrbak7dpiclqrw7a"; depends=[]; }; - mlt = derive2 { name="mlt"; version="0.0-30"; sha256="0r4xfjlyrixs9mjbgag72qkv7nqf9vq2qy8drdfybwg69d763wap"; depends=[basefun BB numDeriv quadprog sandwich variables]; }; - mlt_docreg = derive2 { name="mlt.docreg"; version="0.0-30"; sha256="1gbidyjq0bdg5mmlx6aivlm1j22ddwlc1q6r7h3pq6ri7yzmmaxw"; depends=[mlt numDeriv]; }; - mlxR = derive2 { name="mlxR"; version="2.2.0"; sha256="1ca0vfky45gvr2rqbgli79v1mqhi0d8mpd220xxs1p6xlwbyvn0m"; depends=[ggplot2 Rcpp XML]; }; - mma = derive2 { name="mma"; version="2.0-4"; sha256="1c8jbgb3nsrfrdbbj85qkabz497qrwvk6ddzxm985hq50kfpbxv0"; depends=[gbm]; }; - mmand = derive2 { name="mmand"; version="1.3.0"; sha256="134fqkdysxdg7r7syv0d3yffvmgdjhm91ywh39i955ldprbh4qbv"; depends=[Rcpp RcppEigen reportr]; }; + mlt = derive2 { name="mlt"; version="0.1-2"; sha256="0z7gvg31by1xbw6yqxfs2hvfw7l0392gsrislah05bjay482b01q"; depends=[basefun BB numDeriv quadprog sandwich variables]; }; + mlt_docreg = derive2 { name="mlt.docreg"; version="0.1-4"; sha256="15gc27rgw728f005wriik3dixw4f38krjg0zy0fx5macij3fbc7z"; depends=[mlt numDeriv]; }; + mltools = derive2 { name="mltools"; version="0.2.0"; sha256="0q7k4gkvswlkvjjvjpaw72cx7wjb26yjpap1yqbdq9b3gq32w02j"; depends=[data_table Matrix]; }; + mlxR = derive2 { name="mlxR"; version="3.1.0"; sha256="1xdv7s6li1kwn8m4dnhz18rhmhv13y128npcfmfka646l0p5g1r9"; depends=[ggplot2 Rcpp XML]; }; + mma = derive2 { name="mma"; version="4.0-0"; sha256="1dj9z9brmqrfl4ah27cjwksh16b6nww033wwf741hiadr5jl13pn"; depends=[car gbm gplots survival]; }; + mmand = derive2 { name="mmand"; version="1.4.1"; sha256="1gkn0dhfffsa2bsrm6wy21l1w17x6h3znfn4a8s8yvgggwnq4030"; depends=[Rcpp reportr]; }; mmap = derive2 { name="mmap"; version="0.6-12"; sha256="12ql03wzwj23h8lwd07rln6id44mfrgf9wcxn58y09wn3ky1rm6a"; depends=[]; }; mmc = derive2 { name="mmc"; version="0.0.3"; sha256="03nhfhiiadga8mcp33kj20g33v9n5i62fdqgi20h5p80g849k719"; depends=[MASS survival]; }; mmcm = derive2 { name="mmcm"; version="1.2-6"; sha256="0lk2lk8j4hq6shw3vpq53gvh2w1gwkayvgfny4i04k5fglbwivg7"; depends=[mvtnorm]; }; @@ -5554,13 +6929,18 @@ in with self; { mmeta = derive2 { name="mmeta"; version="2.2"; sha256="06zkazi97f3il2vlx4f8c7zz4kxs9ylhscd06j31h504c1w96ddf"; depends=[aod HI]; }; mmm = derive2 { name="mmm"; version="1.4"; sha256="1nydian004nldqhyw3x15w6qfml2gkjc0x8ii54faz563byjv3d8"; depends=[gee]; }; mmm2 = derive2 { name="mmm2"; version="1.2"; sha256="1h9pn5s3jjs4bydrr1qysjb4hv7vs4h3m7mvi22ggs2dzyz3b298"; depends=[gee]; }; - mmod = derive2 { name="mmod"; version="1.3.1"; sha256="1srk46m95kh0y25nw53z671dd7zbmrfnfn7gmhnzxvc6dq0wvshh"; depends=[adegenet pegas]; }; + mmod = derive2 { name="mmod"; version="1.3.2"; sha256="1yq3cvkfsqmiiqqzyisfiyzfcd2jdp7xv19rydpqaq4qb6322ljg"; depends=[adegenet pegas]; }; + mmpf = derive2 { name="mmpf"; version="0.0.2"; sha256="0cw45rfrcb2f3ghfkkxm3gzdms7mn7rl4gmqnr4jbxyqca263aza"; depends=[checkmate data_table]; }; mmpp = derive2 { name="mmpp"; version="0.4"; sha256="120ciyd9c6zwbdvzcpasb1476d0i9h28a1a5c99z3zar8lpp184p"; depends=[]; }; mmppr = derive2 { name="mmppr"; version="0.1"; sha256="0fswkqcw0xkqd9gmqabb61i32zscp5jzfx0z43wq7mrlwynryylv"; depends=[expm reshape2]; }; mmtfa = derive2 { name="mmtfa"; version="0.1"; sha256="113bpcb05i78y78byrdn9j45dfcar7q8z7qmlid8cl6b8cjv1vfz"; depends=[matrixStats mvnfast]; }; - mnlogit = derive2 { name="mnlogit"; version="1.2.4"; sha256="0s7pp3qflnscs0z9fjvnl6rh5j92jnpksqli65gmrqwbqp3md8i8"; depends=[Formula lmtest mlogit]; }; + mnis = derive2 { name="mnis"; version="0.2.1"; sha256="0jacjwz68667k5066v6lv1dhw946mjnvff53j2l8vdsxzm34hbc6"; depends=[httr jsonlite plyr]; }; + mnlogit = derive2 { name="mnlogit"; version="1.2.5"; sha256="0vwragk71hisz7dy4h5i6zl9yp6wvzwlnfyw2kprnd94y02laq63"; depends=[Formula lmtest mlogit]; }; mnormpow = derive2 { name="mnormpow"; version="0.1.1"; sha256="0z53vwhkhkkr6zrjhd3yr14mb02vh7lr63frf0ivajndxiap0s9v"; depends=[]; }; - mnormt = derive2 { name="mnormt"; version="1.5-4"; sha256="0dr8lm1yjh5rwfjn8bjpxaklcym7alqda0nwrjmp6pvqf09wmvl8"; depends=[]; }; + mnormt = derive2 { name="mnormt"; version="1.5-5"; sha256="1b34xxrnf35khsx82mhvmk96sgfr2flyasaah7qkb2976pwxay7z"; depends=[]; }; + mockery = derive2 { name="mockery"; version="0.3.0"; sha256="1ydgxqdzwn68b84a7557nasgm1r5jk2mivzwq9x71p7zwqf4c8vd"; depends=[testthat]; }; + mod09nrt = derive2 { name="mod09nrt"; version="0.14"; sha256="1wn1y33bj9r712l0f063j5gcl423anjzmvgfy0ddihcrbpz4l7a0"; depends=[]; }; + modEvA = derive2 { name="modEvA"; version="1.3.2"; sha256="0p41fl0k780rx1vmq9laknz01ar6507sj8ss8kphrqkjnymsi2a0"; depends=[]; }; modMax = derive2 { name="modMax"; version="1.1"; sha256="1mx4623az7vzaqf530pklx7j92qwwq93pa2416lnr24jjcxgva2h"; depends=[gtools igraph]; }; modQR = derive2 { name="modQR"; version="0.1.1"; sha256="1dc04wrax73f6fzkl6ycsa3wzf5347h79ah3vy3m24f4hjncnffw"; depends=[geometry lpSolve]; }; modTempEff = derive2 { name="modTempEff"; version="1.5.2"; sha256="00xdvc0i3p8wq913giy44w0xz07sa4bdgqpi7pmpbv2c5wj30pk1"; depends=[mgcv]; }; @@ -5568,116 +6948,141 @@ in with self; { modehunt = derive2 { name="modehunt"; version="1.0.7"; sha256="0qz9kmf1qfs2dr7kzm9l7ac0h5rvi3b9j9896p991sk4bcalsl0b"; depends=[]; }; modelObj = derive2 { name="modelObj"; version="1.0"; sha256="0r4smak9hni9pzih4nzkpv3bq18acrsmmxs1a13wq3pgjfvkwa63"; depends=[]; }; modelfree = derive2 { name="modelfree"; version="1.1-1"; sha256="0ammka2wxx90z31zfzypw9dk5n118l0vxhykxbx6srfig2vdyn82"; depends=[PolynomF SparseM]; }; + modelr = derive2 { name="modelr"; version="0.1.0"; sha256="1vrhszix1kq5p02i044vjlbpmkdgn6ifg1jk00if7bn33sb872vy"; depends=[broom dplyr lazyeval magrittr purrr tibble tidyr]; }; modeltools = derive2 { name="modeltools"; version="0.2-21"; sha256="0ynds453xprxv0jqqzi3blnv5w6vrdww9pvd1sq4lrr5ar3k3cq7"; depends=[]; }; modes = derive2 { name="modes"; version="0.7.0"; sha256="185qjrmz2sj0l5931g4d3kx3jpgjn4rf4lln84h6g97prk1ykqmj"; depends=[]; }; modiscloud = derive2 { name="modiscloud"; version="0.14"; sha256="0vwhfp50yb21xkanvzk983vk0laflv60kj1ybx3fydfljwqx0rwj"; depends=[date raster rgdal sfsmisc sp]; }; moduleColor = derive2 { name="moduleColor"; version="1.08-3"; sha256="183l968l49b7jbmvsjjnmk1xd36cpjkp777c00gw1f73h6nb2na8"; depends=[dynamicTreeCut impute]; }; - modules = derive2 { name="modules"; version="0.3.0"; sha256="0xbkzjs2960p92k0qx7gi7wgiwqvr76bwa75csxghjr79w41yr4q"; depends=[aoos stringr]; }; + modules = derive2 { name="modules"; version="0.5.0"; sha256="1dwvwdfshhdv7fk346l8czbkq0f1im0xfci3pzzinkdlfi3m0h2a"; depends=[stringr]; }; + modygliani = derive2 { name="modygliani"; version="1.0"; sha256="01g96cdm4hgbsh6xsdfjg7vp7zb138sxwgv0msrlm27a6p4fcnlx"; depends=[]; }; + moezipfR = derive2 { name="moezipfR"; version="1.0"; sha256="192gmn591g7fn0v2kp6i20rpziyf81mgq1gqwvwsrcc7lnbgrw04"; depends=[numDeriv tolerance VGAM]; }; mogavs = derive2 { name="mogavs"; version="1.0.1"; sha256="1bzjrcisbg0fb8kj8x9ngd9i1nrhif1rdacz6nrny6xrmw0m3ckp"; depends=[cvTools]; }; - mokken = derive2 { name="mokken"; version="2.7.7"; sha256="1v0khh1bb2h7j2x54mdw8vqlimhw25r2ps89hw4l88qfaz05ir77"; depends=[poLCA]; }; - molaR = derive2 { name="molaR"; version="2.1"; sha256="1425m138vsx42hp8kfa93ac5y0hs7zzb8lr4nmxx9jbbrva11lfp"; depends=[alphahull geomorph psych rgl Rvcg]; }; - mombf = derive2 { name="mombf"; version="1.6.1"; sha256="16agh7lclkx3709cll3mgnm4bby8m5sscizblw1m5hjmld4d4mjm"; depends=[actuar mgcv mvtnorm ncvreg survival]; }; - momentchi2 = derive2 { name="momentchi2"; version="0.1.0"; sha256="02k4hzhqmqh7sx7dzb6w84fc1f5523md3284y4gvdbaw9y34ayk8"; depends=[]; }; + mokken = derive2 { name="mokken"; version="2.8.4"; sha256="1c3jjsbs8wp2z701y9qmr6v6q90achlchpbfwf31skj6bg2y85zm"; depends=[poLCA]; }; + moko = derive2 { name="moko"; version="1.0.0"; sha256="0nsj83hn0kflsw15ghw6b5zjsd875vj9vj7i0ag67cn2n82yncb5"; depends=[DiceKriging DiceOptim emoa GenSA GPareto mco]; }; + molaR = derive2 { name="molaR"; version="4.2"; sha256="1xz4vfb9rkw731cxjqvh7hpcm2lly9hmxp951il536gwb665jh1j"; depends=[alphahull rgl Rvcg]; }; + mombf = derive2 { name="mombf"; version="1.8.3"; sha256="0pbbklhvc4hlw2rpf4vg0p8c9bcq2cd5yxm6x6sbqdf3709ffy6j"; depends=[actuar mgcv mvtnorm ncvreg survival]; }; + momentchi2 = derive2 { name="momentchi2"; version="0.1.5"; sha256="1fv0jmwws4mkl9dsaybfpj29ncvqx2idsijgwz2qjblcg309a6k9"; depends=[]; }; moments = derive2 { name="moments"; version="0.14"; sha256="0f9y58w1hxcz4bqivirx25ywlmc80gbi6dfx5cnhkpdg1pk82fra"; depends=[]; }; momr = derive2 { name="momr"; version="1.1"; sha256="091vzaw8dm29q89lg2iys25rbg2aslgdn9sk06x038nngxdrn95r"; depends=[gplots Hmisc nortest]; }; mondate = derive2 { name="mondate"; version="0.10.01.02"; sha256="18v15y7fkll47q6kg7xzmj5777bz0yw4c7qfiw2bjp0f3b11qrd2"; depends=[]; }; - mongolite = derive2 { name="mongolite"; version="0.8.1"; sha256="103flzk27vb69m02d7v7xp67yvzprffqmz7kha07vb9wya5xrlrr"; depends=[jsonlite]; }; - monitoR = derive2 { name="monitoR"; version="1.0.4"; sha256="1ai99lim84nc14ls2jlfflvqm67bgaqb373k9wah83gpq35wdksc"; depends=[tuneR]; }; + mongolite = derive2 { name="mongolite"; version="0.9.1"; sha256="1hy36bh9klhdj2yxr3b2rl101lsgfgw61l5zn08brvvh04zvfv31"; depends=[jsonlite openssl]; }; + monitoR = derive2 { name="monitoR"; version="1.0.5"; sha256="1rqcdg4gha5vh3dvxqzr2albi2capm18rkgf79rd769hrk3z09l5"; depends=[tuneR]; }; + monkeylearn = derive2 { name="monkeylearn"; version="0.1.1"; sha256="1w0d4cvd1y3wal8r0hg8w08x1zqzkv7ag8nyplmkqv9vwc15qd26"; depends=[digest httr jsonlite tibble]; }; monmlp = derive2 { name="monmlp"; version="1.1.3"; sha256="1f42d8j6jxz8x3yy02ppimbza3b3dn8402373qhj4yizrfk9wkz9"; depends=[]; }; monogeneaGM = derive2 { name="monogeneaGM"; version="1.1"; sha256="0fbz26jx05xmna799s086khy6j8xbvv91vh544npd49isnag1v6v"; depends=[ape circular cluster geomorph gplots phytools rgl]; }; - monographaR = derive2 { name="monographaR"; version="1.01"; sha256="1qrgdbwj9y0glhb74l6smhf1g387dq0n3hf06irysxb7a3ypvkki"; depends=[circular maptools png raster rmarkdown sp]; }; - monomvn = derive2 { name="monomvn"; version="1.9-6"; sha256="1iisnwgqkh2svrmzd8r4qh8jm4l664ws795jkp3dgx0dadxjqhj6"; depends=[lars MASS mvtnorm pls quadprog]; }; + monographaR = derive2 { name="monographaR"; version="1.2.0"; sha256="0sis2kw07ifq54w6p56zspmlnvxvq6ajb0sdvc9fk480sfxg9806"; depends=[circular maptools png raster rmarkdown sp]; }; + monomvn = derive2 { name="monomvn"; version="1.9-7"; sha256="1bz967sl6ji84x9v0fypjn75d39naaqgvw31n9lgcd5lyj39hbsk"; depends=[lars MASS mvtnorm pls quadprog]; }; monreg = derive2 { name="monreg"; version="0.1.3"; sha256="08rcg2xffa61cgqy8g98b0f7jqhd4yp8nx6g4bq3g722aqx4nfg3"; depends=[]; }; moonBook = derive2 { name="moonBook"; version="0.1.3"; sha256="1wy8qwzymh482gfb4v9v74k666mq8dz2yird7gz43l3hps22kfgb"; depends=[nortest survival]; }; moonsun = derive2 { name="moonsun"; version="0.1.3"; sha256="1y8mwxmcy4iz444c2fayyi4i0jk1k561dp6cbjg2b3lmdml0whmi"; depends=[]; }; mopsocd = derive2 { name="mopsocd"; version="0.5.1"; sha256="10hssnm1afqmxa9kw6ifqnz3p3yyjrmxgi98zlj31a5g4nis8wb1"; depends=[]; }; morgenstemning = derive2 { name="morgenstemning"; version="1.0"; sha256="17y90cf8ajmkfwla0hm4jgkbkd1mxnym63ph2468sfxkhn0r3v88"; depends=[]; }; - morse = derive2 { name="morse"; version="2.1.1"; sha256="1l2rgkjvpdsz8cqqppgd5565mz4dgl7w5wcdgrkm1hy493989069"; depends=[coda dplyr ggplot2 gridExtra rjags stringr]; }; - mosaic = derive2 { name="mosaic"; version="0.13.0"; sha256="0rf88124rcc191rr9y3kawakh0b9f94203nllxyr3a4mb4lkk4vk"; depends=[car dplyr ggdendro ggplot2 gridExtra lattice latticeExtra lazyeval MASS mosaicData readr reshape2]; }; - mosaicData = derive2 { name="mosaicData"; version="0.13.0"; sha256="19f35674accaqs6yqqyn9y8ggj1qhz5w3na0815768mlb91gy2j8"; depends=[]; }; - moult = derive2 { name="moult"; version="1.4"; sha256="0nglf7wijp2v66fpyh88glbn1glp8vvkbvpc1g6136bg6ahbbkkl"; depends=[Formula Matrix]; }; + morse = derive2 { name="morse"; version="2.2.0"; sha256="0l52hwhbspf1d6wi0qnwgwjjc1kkixkfdsf81jvwshnxbci4s3kw"; depends=[coda dplyr epitools ggplot2 gridExtra reshape2 rjags stringr]; }; + mosaic = derive2 { name="mosaic"; version="0.14.4"; sha256="0dvlykr05jjpnjcvkffmjpc83bnbvg7i5zkjr2y1c7h16hy9d5wz"; depends=[dplyr ggdendro ggplot2 gridExtra lattice latticeExtra lazyeval MASS Matrix mosaicData readr tidyr]; }; + mosaicData = derive2 { name="mosaicData"; version="0.14.0"; sha256="0f092wp2lpj8rk6r2bd5mxp4q3n7ia9h838z8prrz56vwh3gbpw0"; depends=[]; }; + mosaicQA = derive2 { name="mosaicQA"; version="1.2.0"; sha256="0ddgvvw679pg7lixyxqxqi8pzyy03w6h4z5cas09m2m16nz2nr2f"; depends=[gplots psych]; }; + moult = derive2 { name="moult"; version="2.0.0"; sha256="177fhi3f5qsg2k4qb1cgviq96aln80qwri1hf9yym6wrzn8crj7r"; depends=[Formula Matrix]; }; mountainplot = derive2 { name="mountainplot"; version="1.1"; sha256="1l3m7jgq70g83mmfhlwzj5gkdnwgl14g9ljpk6j7z7qxapzva3bb"; depends=[lattice]; }; mousetrack = derive2 { name="mousetrack"; version="1.0.0"; sha256="0lf0xh0c3xl27nh5w8wwyrm2jfzfajm2f73xjdgf746dp365qc8n"; depends=[pracma]; }; - mousetrap = derive2 { name="mousetrap"; version="1.0.0"; sha256="1zmgf2adhzrdpmh5hx44z8wyjrkg9s3qjcwh18ljiivn8i7fgs7n"; depends=[diptest ggplot2 pracma psych reshape2 scales]; }; - movMF = derive2 { name="movMF"; version="0.2-0"; sha256="1p9ay7w93gyx4janw23iwg2j0wkvnvzalaa20n1rlahhmh327g7i"; depends=[clue skmeans slam]; }; - move = derive2 { name="move"; version="1.6.541"; sha256="13dil2avb7mf45qxrgwbl56ll0zbz007hz74crjlc045x24b0nlx"; depends=[geosphere httr raster rgdal sp]; }; - moveHMM = derive2 { name="moveHMM"; version="1.1"; sha256="05za2lb7s0kvvzm8a85qm3wf0qi3wvs9x5mwir8k5bhj1kav2imp"; depends=[boot CircStats MASS Rcpp RcppArmadillo sp]; }; - mp = derive2 { name="mp"; version="0.3.1"; sha256="0hwn0dg0k7nhl0jv680q5z9v46mfknndp5xswyl5chkw4ppmnyf2"; depends=[Rcpp RcppArmadillo]; }; + mousetrap = derive2 { name="mousetrap"; version="3.0.0"; sha256="06xadwhcpvqji2qdg2a9xnwq5n3qnyfhziifaaargpzzaz25nvmf"; depends=[cstab diptest dplyr fastcluster ggplot2 magrittr pracma psych RColorBrewer Rcpp scales tidyr]; }; + movMF = derive2 { name="movMF"; version="0.2-1"; sha256="1yrjz76bwhziwdj2xdibr3lxcka4nq32b6rq3m9q0vkv9gspmw6v"; depends=[clue skmeans slam]; }; + move = derive2 { name="move"; version="2.1.0"; sha256="1dk83wdfwmxwr6zhy574h9n95kss0b0bprqd20gwwfk27mfjmc8h"; depends=[geosphere httr raster Rcpp rgdal sp]; }; + moveHMM = derive2 { name="moveHMM"; version="1.3"; sha256="1idna90fw1i8g8cnhzxnqvb6bh8w51h426ngknrv8bh1skl09fck"; depends=[boot CircStats ggmap ggplot2 MASS Rcpp RcppArmadillo sp]; }; + moveWindSpeed = derive2 { name="moveWindSpeed"; version="0.2.1"; sha256="020bl3i0i393dfknix03k8y70fjsf0lbw0mqrnhwsvz8kwrw3hi1"; depends=[move Rcpp]; }; + mp = derive2 { name="mp"; version="0.4.1"; sha256="0awvwqwb25q47j14b450k1k5mh2yzwhn7gizjv5j7lyiamk30iwq"; depends=[Rcpp RcppArmadillo]; }; mpMap = derive2 { name="mpMap"; version="1.14"; sha256="0gmhg5ps8yli8699a5aw26skfbjxx4zpp0paqxxdc0zl28l0pdff"; depends=[gdata qtl seriation wgaim]; }; mpa = derive2 { name="mpa"; version="0.7.3"; sha256="0mhnsbgr77fkn957zfiw8skyvgd084rja1y4wk5zf08q5xjs2zvn"; depends=[network]; }; - mpath = derive2 { name="mpath"; version="0.2-1"; sha256="1419grr2baqw0m5fv17pcrxxwbax91savnzrg98b7xrs9cqnq97y"; depends=[doParallel foreach glmnet MASS numDeriv pscl]; }; + mpath = derive2 { name="mpath"; version="0.2-4"; sha256="0razmc8cvalcv6ibkfh2snc6vyiwl20zpawx0yp261qhn8gkr5js"; depends=[doParallel foreach glmnet MASS numDeriv pscl]; }; mpbart = derive2 { name="mpbart"; version="0.2"; sha256="1145n0lxmm0kjm2lc358d79hqws48crj17pjvmchl1pbfd7zi4r8"; depends=[bayesm cvTools mlbench mlogit]; }; mpcv = derive2 { name="mpcv"; version="1.1"; sha256="0vwycspiw9saj811f6alkbijivy7szpahf35bxn2rpn2bdhbn21i"; depends=[lpSolve]; }; + mpe = derive2 { name="mpe"; version="1.0"; sha256="17bgdbg1zrf78djd3mwycidwibxvsis7pwkrcynvghcc8l2zfci9"; depends=[mvtnorm]; }; mph = derive2 { name="mph"; version="0.9"; sha256="11wcy23sv8x7aq6ky8wi0cq55yhjkkm9hn672qy803dwzzxv5y61"; depends=[]; }; - mplot = derive2 { name="mplot"; version="0.7.7"; sha256="052idykpv2362mmqvf9zcr1s383hjfgigwhhdxn9a4azdf8djzh0"; depends=[bestglm doParallel foreach glmnet googleVis leaps plyr shiny shinydashboard]; }; + mplot = derive2 { name="mplot"; version="0.7.9"; sha256="10syv0wibqyzgjhkya2chpb2izhk2b6aibj5wvgypvr7zyjhd5f8"; depends=[bestglm doParallel dplyr foreach ggplot2 glmnet glmulti googleVis leaps plyr reshape2 scales shiny shinydashboard]; }; mpm = derive2 { name="mpm"; version="1.0-22"; sha256="0wijw8v0wmbfrda5564cmnp788qmlkk21yn5cp5qk8aprm9l1fnk"; depends=[KernSmooth MASS]; }; mpmcorrelogram = derive2 { name="mpmcorrelogram"; version="0.1-3"; sha256="0qgzsh744002whh3v1hrxs1i0xnk9zgfgkdgx2f0ffj00vvnwr97"; depends=[vegan]; }; - mpmi = derive2 { name="mpmi"; version="0.41"; sha256="1iwdhvdglsamzq18f0r5mh0anrd4ffrddafdlbw16kr8jy0c8fdn"; depends=[KernSmooth]; }; - mpoly = derive2 { name="mpoly"; version="1.0.0"; sha256="1y8hx97hxhfsik4sikdlmrp2p05xywjqw1fx77rb1s6j97k3kbnk"; depends=[ggplot2 orthopolynom partitions plyr polynom reshape2 rJava rjson rJython rSymPy stringr]; }; + mpmi = derive2 { name="mpmi"; version="0.42"; sha256="1j7xsgz3pgbb7a4ykrcj22isbi5svqsxcckai05q7b401h1ppsnh"; depends=[KernSmooth]; }; + mpoly = derive2 { name="mpoly"; version="1.0.3"; sha256="1wcpr7dps1cnl3x46703an9cjb3srz62wvafdsj2i0dazs6dq4sa"; depends=[ggplot2 orthopolynom partitions plyr polynom stringr tidyr]; }; mppa = derive2 { name="mppa"; version="1.0"; sha256="06v6vq2nfh4b407x2gyvcp5wbdrcnk3m8y58akapi66lj8xplcx4"; depends=[]; }; - mpt = derive2 { name="mpt"; version="0.5-2"; sha256="16rrcy8hy9fw603pbi9wybnql11w0bxlxi1kxx482khg9fj7lwn0"; depends=[]; }; + mpr = derive2 { name="mpr"; version="1.0.4"; sha256="13fqvndwxzqa1safa43ad90pkiqnpqmgr0pkwp8lwmnxqmrmj0jb"; depends=[survival]; }; + mpt = derive2 { name="mpt"; version="0.5-4"; sha256="01akz72z6z5ybzika120v4v6ah13hfynh98rzbmqgbchijxbbkz6"; depends=[]; }; mptools = derive2 { name="mptools"; version="1.0.1"; sha256="1g4fbfwxv9hir0jn22nh9854blgkh0b5jan3lv0888izj4isa1hc"; depends=[animation lattice latticeExtra raster rasterVis sp viridis zoo]; }; - mrMLM = derive2 { name="mrMLM"; version="1.1"; sha256="0gcn43vjy4mjchklwpmda1r2pbnga6gadcw3fllv7483jjrk4g80"; depends=[gWidgets gWidgetsRGtk2 qqman RGtk2 RGtk2Extras]; }; + mrMLM = derive2 { name="mrMLM"; version="2.1"; sha256="0ip8xd2dj6d4hxq18pf4j6mk4yl00ajci72rr485wk94cr0zj5hy"; depends=[ggplot2 gWidgets gWidgetsRGtk2 lars MASS ncvreg openxlsx qqman RGtk2 RGtk2Extras stringr]; }; mra = derive2 { name="mra"; version="2.16.4"; sha256="134fw4bv34bycgia58z238acj7kb8jkw51pjfa2cwprrgsjdpf5g"; depends=[]; }; mratios = derive2 { name="mratios"; version="1.3.17"; sha256="0a2pn4234ri5likaqbxgkw8xqmwchr6fak3nninral0yzd4rcal5"; depends=[mvtnorm]; }; - mrds = derive2 { name="mrds"; version="2.1.14"; sha256="0lvr9zqyi45a100w31k228b03plna24rzgamsvfa34inyd8q4y9m"; depends=[mgcv numDeriv optimx Rsolnp]; }; + mrds = derive2 { name="mrds"; version="2.1.17"; sha256="1vs9fldk9gcwvd1acwswzvblnkdm4bv3jmaamlrp3ik6vyd6xjvv"; depends=[mgcv numDeriv optimx Rsolnp]; }; mreg = derive2 { name="mreg"; version="1.1"; sha256="06la0yy2yys161jhlzlcm5lcv0664wm6sa8gjdnpd1s1nx52jkqf"; depends=[]; }; + mregions = derive2 { name="mregions"; version="0.1.4"; sha256="1xlgbjm339wr2rs5i6ddyp1lmfgzjb53gw44c3cj1x5qx1jrp7b1"; depends=[data_table httr jsonlite rappdirs sp tibble wellknown xml2]; }; + mrfDepth = derive2 { name="mrfDepth"; version="1.0.2"; sha256="0byfcny476zmf11h5aynwix4fshy22aymrw93kybmpvffscjvq3x"; depends=[geometry ggplot2 matrixStats Rcpp RcppEigen reshape2]; }; mri = derive2 { name="mri"; version="0.1.1"; sha256="07lqr9fv0nqd626jpqa6x1qxf85r1j4r5brv760dll1p2kl060gw"; depends=[]; }; mritc = derive2 { name="mritc"; version="0.5-0"; sha256="1344x7gc7wvmcqp0sydppavavvps5v7bs0dza2fr8rz3sn4as8sa"; depends=[lattice misc3d oro_nifti]; }; - ms_sev = derive2 { name="ms.sev"; version="1.0.2"; sha256="169z9x8jv06rv1b3qh4nynzwq5zhqq3j5r6k1azygsc2wzpzm039"; depends=[]; }; - msBP = derive2 { name="msBP"; version="1.0-2.1"; sha256="1yprhglqykh6v2jicab25a0ny1r49kaj3i04fspi3was2md2qbzd"; depends=[DPpackage]; }; + ms_sev = derive2 { name="ms.sev"; version="1.0.4"; sha256="1sr2rgiskgwjhwif70qj6ga8i8kg4bh342hff66b2a54rxrchmw5"; depends=[]; }; + msBP = derive2 { name="msBP"; version="1.2"; sha256="1sp8njnvv42q8fkcsjzpfg9p9dzz0hjsn2a6b9kfaymx7zvks2sq"; depends=[DPpackage]; }; msSurv = derive2 { name="msSurv"; version="1.2-2"; sha256="02qm3mq17d2yj5mbz6gapd3zfi1wmiad5hpyimcb39impk43n2hf"; depends=[class graph lattice]; }; + msaFACE = derive2 { name="msaFACE"; version="0.1.0"; sha256="1lh8crz507nlddm946lmn73xbnsh4cs0kg238ysnsvxs726c83fs"; depends=[]; }; + msaR = derive2 { name="msaR"; version="0.1.0"; sha256="0krfass51686ki4wv8nj3kipgsv1v3rs5n6wcdyyqyd1ni8j7mr2"; depends=[ape htmlwidgets]; }; + msaenet = derive2 { name="msaenet"; version="2.4"; sha256="045f38fzlxsawsssyvp7122dc44hvzyha05js7xzb5zg1pq0i1qv"; depends=[foreach glmnet Matrix mvtnorm ncvreg survival]; }; msap = derive2 { name="msap"; version="1.1.8"; sha256="0z5lm782jjb9w1h5vgz8bmxjdcrq9zb3xp1w5cb479jjc7krlgg3"; depends=[ade4 ape]; }; msarc = derive2 { name="msarc"; version="1.4.5"; sha256="1jv364502m6q2w039dmdhwsx5id39jc4xcabyrbwbrgy65kwfspg"; depends=[AnnotationDbi gplots RColorBrewer wordcloud XLConnect]; }; + mscstexta4r = derive2 { name="mscstexta4r"; version="0.1.2"; sha256="1hjcasmn33xav2mw085lcndv0432l6sz327aikf63491wj1sj7mw"; depends=[dplyr httr jsonlite pander stringi]; }; + mscsweblm4r = derive2 { name="mscsweblm4r"; version="0.1.2"; sha256="031s00wpr9zfjpii56m67q1phn05vqlhb8cfzhyf6fbrxvpb8k7n"; depends=[httr jsonlite pander]; }; msda = derive2 { name="msda"; version="1.0.2"; sha256="05khpa5qasnngn6yvk87gv5262plqpw4knb6hzgy52w401k0y80r"; depends=[MASS Matrix]; }; mseapca = derive2 { name="mseapca"; version="1.0"; sha256="115njdk8cv55zxd38hq9qaca686ykckni0f3xl8w3bn32gb5g9a7"; depends=[XML]; }; - msgl = derive2 { name="msgl"; version="2.2.0"; sha256="1k1kmgz8h5irdfjja0gcig2z6icwzcnzv1z9l0halcpfb1b2n36f"; depends=[BH Matrix Rcpp RcppArmadillo RcppProgress sglOptim]; }; + msgl = derive2 { name="msgl"; version="2.3.5"; sha256="0lihvgh86r3swfma6msjbsmfc14b1p1h16v6pkd53v5q3dp4asld"; depends=[BH Matrix Rcpp RcppArmadillo RcppProgress sglOptim]; }; msgpackR = derive2 { name="msgpackR"; version="1.1"; sha256="0a6vm4q1zfy8wlvhl9wfy09ig1iag9fvjasz5w9bll7idky4ldx5"; depends=[]; }; msgps = derive2 { name="msgps"; version="1.3"; sha256="0nvxy9a41z5d111gqr1gh521imm795l1li70g1mzrag1gpg810c5"; depends=[]; }; - msir = derive2 { name="msir"; version="1.3"; sha256="0d7zxjmhr1ri3qz3fdkf56fi5dz2p9lb2vyqccrpn7js2ibkqhpl"; depends=[mclust]; }; + msgtools = derive2 { name="msgtools"; version="0.2.4"; sha256="1m0a6f2q23jm4nl6sp1ympqkiv478q8hgdn5wjfg6gx0nij29jmk"; depends=[devtools digest hunspell poio tibble]; }; + msir = derive2 { name="msir"; version="1.3.1"; sha256="1ipzgdffsqly3dp91pw7yp3h5cwn08l9qsj7cdmrykd42jc98950"; depends=[mclust rgl]; }; msltrend = derive2 { name="msltrend"; version="1.0"; sha256="1rwy77ijf3hzq2zp47cijwvqcq34rdlfxwhrd9l56bvmlmzr1dqx"; depends=[changepoint forecast plyr Rssa tseries zoo]; }; - msm = derive2 { name="msm"; version="1.6.1"; sha256="192s01amh5q0z65ik2vsika9x81iqjjqabr3jczm5app0phx9i72"; depends=[expm mvtnorm survival]; }; + msm = derive2 { name="msm"; version="1.6.4"; sha256="0h0h9cgavpylbj9692750if1hw7qylhsad549fqjx5l0zqbh3zhy"; depends=[expm mvtnorm survival]; }; msma = derive2 { name="msma"; version="0.7"; sha256="0rrxxva71j8gk25hi6hycnyrhrdc0skcaj1bnmh029cqhjl3qma5"; depends=[mvtnorm]; }; msme = derive2 { name="msme"; version="0.5.1"; sha256="1bkj10pgmv9q61384fwd2pxccclclc3knc5x212p42w4w49hnm1q"; depends=[lattice MASS]; }; + msmtools = derive2 { name="msmtools"; version="1.2"; sha256="0pci771mkz9zaf5dbpd9lddpyfffimwsa3mql2z5sbx2xlrycvqj"; depends=[data_table msm survival]; }; msos = derive2 { name="msos"; version="1.0.1"; sha256="0fbxi8x83sj8a6bahc7q28vql00pxqdia2vxb6ilsc459xaph6vc"; depends=[mclust tree]; }; msr = derive2 { name="msr"; version="0.4.4"; sha256="1r7kzicyi380xylw4vl88918gqmvs875f3rssx57yg28swb93sv0"; depends=[colorspace e1071 glmnet RColorBrewer rgl]; }; - mstate = derive2 { name="mstate"; version="0.2.9"; sha256="0yp7dfbp711if1n32hmz56ycn0f1bblhajf0w04mw8yicad7ri7n"; depends=[RColorBrewer survival]; }; - mtconnectR = derive2 { name="mtconnectR"; version="0.2.0"; sha256="0gznqcgm5zrmww3zwb09rgfn3fhzj62a4q8c1jd3833vnlikbalj"; depends=[data_table dplyr plyr stringr XML]; }; + mstate = derive2 { name="mstate"; version="0.2.10"; sha256="14namzs0s7v28xkj1pidccjpxg7570fdqhd64rihvyv1r7ybfyav"; depends=[RColorBrewer survival]; }; + mtconnectR = derive2 { name="mtconnectR"; version="1.0.1"; sha256="151gybpl7d44syk7xclyhy169na58lab7l5vynrf1ark79xidwa3"; depends=[data_table dplyr dtw ggplot2 magrittr plyr proxy stringr tidyr XML]; }; mtk = derive2 { name="mtk"; version="1.0"; sha256="0vq2xlxf86l92fl91qm8m4yfjyz1h8szmwxiics7sc9f0as0dkmy"; depends=[lhs rgl sensitivity stringr XML]; }; mtsdi = derive2 { name="mtsdi"; version="0.3.3"; sha256="1hx4m1jnfhkycxizxaklnd9illajqvv1nml8ajfn3kjmrb5z7qlp"; depends=[gam]; }; muRL = derive2 { name="muRL"; version="0.1-10"; sha256="0411vqijsida63jq63qwflr6lvv0rr777z0xba6pn0gpi6khjqqz"; depends=[maps]; }; muStat = derive2 { name="muStat"; version="1.7.0"; sha256="18727xj9i9hcnpdfnl1b9wd6cp7wl1g74byqpda2gsrcardl57wz"; depends=[]; }; + muckrock = derive2 { name="muckrock"; version="0.1.0"; sha256="16lm1iiaaws7clby7qgblqdiznw6abjjgvsxlfpza7l2xdvplxpg"; depends=[]; }; muhaz = derive2 { name="muhaz"; version="1.2.6"; sha256="1b7gzygbb5qss0sf9kdwp7rnj8iz58yq9267n9ffqsl9gwiwa1b7"; depends=[survival]; }; muir = derive2 { name="muir"; version="0.1.0"; sha256="0h3qaqf549v40ms7c851sspaxzidmdpcj89ycdmfp94b2q3bmz98"; depends=[DiagrammeR dplyr stringr]; }; - multcomp = derive2 { name="multcomp"; version="1.4-4"; sha256="0mrsnppljxrh5myjh41ba0yvr0yq7dlrcm9xk0b4gk4v7m3b50rx"; depends=[codetools mvtnorm sandwich survival TH_data]; }; + multcomp = derive2 { name="multcomp"; version="1.4-6"; sha256="18pd5v288g4d3kyp1wg0fv6ypyhqq9y17fdxkj0ljsj1f7kgp7py"; depends=[codetools mvtnorm sandwich survival TH_data]; }; multcompView = derive2 { name="multcompView"; version="0.1-7"; sha256="18gfn3dxgfzjs13l039l2xdkkf10fapjjhxzjx76k0iac06i1p7i"; depends=[]; }; multgee = derive2 { name="multgee"; version="1.5.3"; sha256="0m7qgpygsax6f2gakrq19bkxvkl9kn8s4n3wy5lbijx01bay9jg2"; depends=[gnm VGAM]; }; multiAssetOptions = derive2 { name="multiAssetOptions"; version="0.1-1"; sha256="1kb4qxyl9shvrpqfxq26lhh3sssmyjcnhhcl6gcbb0s86snh9ms9"; depends=[Matrix]; }; + multiCA = derive2 { name="multiCA"; version="1.0"; sha256="1b4m4faaq57k322m7i7y0jqgj7mz4ch39fsn1via7cnd1rrzavq1"; depends=[bitops]; }; + multiDimBio = derive2 { name="multiDimBio"; version="1.1.1"; sha256="0b0lymnli7w91bfd67dsvzbj3flxsrsmbg4a18mzch0j9y6a40x0"; depends=[ggplot2 gridGraphics lme4 MASS misc3d pcaMethods RColorBrewer]; }; multiPIM = derive2 { name="multiPIM"; version="1.4-3"; sha256="0j7d0cgs8zcyiyibzmfhcandad76sf4gm57wkcv98bf96wkls58l"; depends=[lars penalized polspline rpart]; }; multiband = derive2 { name="multiband"; version="0.1.0"; sha256="1f4gmy0yf9zid7kl05zncvvig6hs4nl1h9wkrkc24rxx9risw9k9"; depends=[]; }; multibiplotGUI = derive2 { name="multibiplotGUI"; version="1.0"; sha256="0ig7r4p8mq594cjwclbqwjk8saqkvjqjbbnnxj1hc1sdj7qdlcpf"; depends=[cluster dendroextras Matrix rgl shapes tcltk2 tkrplot]; }; multic = derive2 { name="multic"; version="0.4.3.1"; sha256="16nzvwnh3qjpvzljanzfcz3flvnlir269ss7pic3c6krg6j4m480"; depends=[]; }; multicon = derive2 { name="multicon"; version="1.6"; sha256="16glkgnm4vlpxkhf1xw1gl1q10yavx9479i21v29lldag35z8pqx"; depends=[abind foreach mvtnorm psych sciplot]; }; - multicool = derive2 { name="multicool"; version="0.1-9"; sha256="0afk95ymvz21klxgf51iw6g0k0w65flralqm5nalkdpirrqjbydx"; depends=[Rcpp]; }; + multicool = derive2 { name="multicool"; version="0.1-10"; sha256="1ybg9piya9psqg42w9i3zsnavbxhkfklfwl7cb420i5nkq6wpc2v"; depends=[Rcpp]; }; multifwf = derive2 { name="multifwf"; version="0.2.2"; sha256="1l6z3pzz6g6w1spp1f918jh6w0jm93qyc882rj8jhn1198d2s8nd"; depends=[]; }; + multigraph = derive2 { name="multigraph"; version="0.50"; sha256="033cxgl1gixrdyyyp7i1hsgf7jjhrn2lnxhp4rq0bnlxg5hgqx8h"; depends=[multiplex]; }; multigroup = derive2 { name="multigroup"; version="0.4.4"; sha256="1r79zapziz3jkd654bwsc5g0rphrk9hkp1fpik8jvjsa1cix40mq"; depends=[MASS]; }; - multilevel = derive2 { name="multilevel"; version="2.5"; sha256="0pzv5xc8p6cpzzv9iq3a3ib1dcan445mm12whf3d6qkz2k4778g6"; depends=[MASS nlme]; }; + multilevel = derive2 { name="multilevel"; version="2.6"; sha256="19zrvpq23dn69d7kai1rgw5b8ibmgybnbg6isliq0n8bv9jvrzia"; depends=[MASS nlme]; }; multilevelPSA = derive2 { name="multilevelPSA"; version="1.2.4"; sha256="0v4mhdpagmkjsc8x4wlqxa88yl3v0y91a1bbq1lh3rhqfmp9yra5"; depends=[ggplot2 MASS party plyr PSAgraphics psych reshape xtable]; }; - multimark = derive2 { name="multimark"; version="1.3.2"; sha256="1x2k7nm46mllja8pcf41gws0xfyj27m2fsli5zwk2s2i0c7jwqnj"; depends=[Brobdingnag coda Matrix mvtnorm RMark statmod]; }; + multimark = derive2 { name="multimark"; version="2.0.0"; sha256="0pz0qd1dbblnbazlrkarqbw3y7qhvrrvdi6g3ch8qgkxjkmdxlwj"; depends=[Brobdingnag coda Matrix mvtnorm prodlim raster RMark sp statmod]; }; multinbmod = derive2 { name="multinbmod"; version="1.0"; sha256="1c4jyzlcjkqdafj9b6hrqp6zs33q6qnp3wb3d7ldlij7ns9fhg71"; depends=[]; }; + multinet = derive2 { name="multinet"; version="1.0"; sha256="1ydwb86dylywj76sqsl1yy08mzgj8vqj1gkv9q683i9wc4k74281"; depends=[igraph Rcpp]; }; multinomRob = derive2 { name="multinomRob"; version="1.8-6.1"; sha256="1fdjfk77a79fy7jczhpd2jlbyj6dyscl1w95g64jwxiq4hsix9s6"; depends=[MASS mvtnorm rgenoud]; }; - multipleNCC = derive2 { name="multipleNCC"; version="1.2"; sha256="12lakxnmcsrrxc52f9p9yrszn7l2iqs6sacf5mz3hpm6h04vlrlp"; depends=[mgcv survival]; }; + multipanelfigure = derive2 { name="multipanelfigure"; version="0.8.3"; sha256="1mjjy1ql8hxb4lfbbh5njly5wswrkf9d63dw24avk9kn7skfmk4h"; depends=[assertive_base assertive_files assertive_numbers assertive_properties assertive_types ggplot2 gridGraphics gtable jpeg magrittr png rsvg tiff]; }; + multipleNCC = derive2 { name="multipleNCC"; version="1.2-1"; sha256="080wpyifpw41p6jip2ia7439jdhzyb7lbhs2qzzg0hn6c0qq7mrr"; depends=[mgcv survival]; }; + multiplex = derive2 { name="multiplex"; version="2.5"; sha256="1yp9n2yzyjrp68fmhv8fgm5qvc4m39qfmw0lnksammmc44hlm12g"; depends=[]; }; + multiplyr = derive2 { name="multiplyr"; version="0.1.1"; sha256="0bsf2zhzqwl3skg26fm27j2wpifky0mph26acrlq8p72njkbcw4d"; depends=[bigmemory bigmemory_sri magrittr]; }; multipol = derive2 { name="multipol"; version="1.0-6"; sha256="1yjz0p4mcgzs98s61i8315wyhh986jxp8b0lq66375ckpr2ddcss"; depends=[abind]; }; multirich = derive2 { name="multirich"; version="2.1.1"; sha256="04jr5jvds70j2psyxz12d2my61jcj5hvdyv10pvar2rpqaw0yxyh"; depends=[]; }; - multisensi = derive2 { name="multisensi"; version="1.0-8"; sha256="168g6hym5chz69wa3vfprg1m1c935wh7bi3gfz5calxiqf89mncz"; depends=[]; }; - multisom = derive2 { name="multisom"; version="1.0"; sha256="057gvajkdiiavngg8a140mx97n11czvx7776wbb3ba1bqx3kr887"; depends=[class kohonen]; }; + multisensi = derive2 { name="multisensi"; version="2.0"; sha256="11al13flm3ywgfpj6s6g2jc38bw6pbalf6k5xgix05bgkdd5647s"; depends=[knitr sensitivity]; }; + multisom = derive2 { name="multisom"; version="1.2"; sha256="0j993zxpj7q4am6w0w6i6r1ilk47rb5lv9ywyrz98mzm8rfpm4k0"; depends=[class kohonen]; }; multispatialCCM = derive2 { name="multispatialCCM"; version="1.0"; sha256="1fzd91w10iln8qb81z240lq3fi4gq22l4rh9npkav6fiq6g6rlp8"; depends=[]; }; - multitable = derive2 { name="multitable"; version="1.6"; sha256="067bgl793wwvb1rhan70ih0ga3dxja2c6zx7fwzml5rqi6p728pr"; depends=[]; }; - multitaper = derive2 { name="multitaper"; version="1.0-11"; sha256="1s0lmjzpyd7zmc2p1ywv5fm7qkq357p70b76gw9wjlms6d81j1n4"; depends=[]; }; + multitaper = derive2 { name="multitaper"; version="1.0-12"; sha256="011qpkwpjclfc24y2qqigmdnikqwdnanflfhihigh5b5k7qwgm5j"; depends=[]; }; multivator = derive2 { name="multivator"; version="1.1-4"; sha256="125ifkpm1pny4rjpzirnwpmpjfg0y8w0rygj0way0p1qwm0l207n"; depends=[emulator mvtnorm]; }; - multiwave = derive2 { name="multiwave"; version="1.0"; sha256="1gag8pw12ksinymxig8sa8wvsd4amaqmzm4ngxmfvci0y4kckx0h"; depends=[]; }; + multiwave = derive2 { name="multiwave"; version="1.2"; sha256="1bw071izjxrsk5gx8s49nrlryabpgpg7k2z1ghmk8p6i9m5apnl8"; depends=[]; }; multiway = derive2 { name="multiway"; version="1.0-2"; sha256="03cj4767xd1918vb4jkp7xk2l4gq340c0kc24h40zq4c3gsxwmbw"; depends=[]; }; - multiwayvcov = derive2 { name="multiwayvcov"; version="1.2.2"; sha256="13a8w87wq7jv9y654qvlik01q4v0j0mrina2xmvrzqlm25f2rj3w"; depends=[boot sandwich]; }; + multiwayvcov = derive2 { name="multiwayvcov"; version="1.2.3"; sha256="1znsmca16jac8s5z0j64cck27pvf88anm1mfblabqchqqcz1ykfc"; depends=[boot sandwich]; }; multxpert = derive2 { name="multxpert"; version="0.1"; sha256="03mvf4m0kabm22vy4zkj1cfh884larpj8cbgg3p9l3pag20snf1l"; depends=[mvtnorm]; }; muma = derive2 { name="muma"; version="1.4"; sha256="0midx3wzyvcz8rk9kvsfll3xg41pkz40si4jw2ps54ykkf9rkm99"; depends=[bitops car caTools gplots gtools mvtnorm pcaPP pdist pls robustbase rrcov]; }; munfold = derive2 { name="munfold"; version="0.3.5"; sha256="17zizx9r0f8dxb7dkgn1nn0fp7ydy6r155p1zfz0v93jc26lc1hb"; depends=[MASS memisc]; }; @@ -5685,112 +7090,136 @@ in with self; { munsellinterpol = derive2 { name="munsellinterpol"; version="1.0.2"; sha256="1c4m9fhggczy3wk51m8qxiahkic1f1lq3r8b0x0mk34pd5wap48a"; depends=[geometry]; }; murphydiagram = derive2 { name="murphydiagram"; version="0.11"; sha256="0wax9gjhzz8nphzwijqzllz4y25jksf1vqfcbnfb7zafsfv40rib"; depends=[]; }; musicNMR = derive2 { name="musicNMR"; version="0.0.2"; sha256="09xxc78ajk428yc3617jfxqp5fy89nfc24f1rig6cw28fflwqj0k"; depends=[seewave]; }; + musica = derive2 { name="musica"; version="0.1.3"; sha256="0cfzfar706l0xdb0n11m18mayj5rrplvf4qry36vgxsiaxcba90r"; depends=[data_table lubridate magrittr qmap]; }; + mutSignatures = derive2 { name="mutSignatures"; version="1.2"; sha256="1kbp221lm43a5wiw754yjkd3qidmca20m0i8jlxsqk8ijbp40ky2"; depends=[cluster doParallel foreach ggplot2 pracma proxy]; }; mutoss = derive2 { name="mutoss"; version="0.1-10"; sha256="1pijr3admnciiwdgxbdac4352m7h08jyvpj7vdd27yx07wp2rri3"; depends=[multcomp multtest mvtnorm plotrix]; }; mutossGUI = derive2 { name="mutossGUI"; version="0.1-10"; sha256="16fgmpnym9nhiywqimjgv10swrvs3whp0nlzsw573vv0k6qjmwd2"; depends=[CommonJavaJars JavaGD JGR multcomp mutoss plotrix rJava]; }; - mvMORPH = derive2 { name="mvMORPH"; version="1.0.6"; sha256="15cy480x3xrwsm3wpcsam24034vd1ga119k4800ga8l70k8gw8cw"; depends=[ape corpcor phytools spam subplex]; }; + mvLSW = derive2 { name="mvLSW"; version="1.0"; sha256="0sbiq7ynilbnwggfl4n9s43cvzgavxq9vi4q09cz3v8wf8xjj3kf"; depends=[fields wavethresh]; }; + mvMORPH = derive2 { name="mvMORPH"; version="1.0.8"; sha256="1psjlqx7xb5zlrwcd2q2by8y8ykffxdcskbzb12f643iimlp1l4m"; depends=[ape corpcor phytools spam subplex]; }; + mvPot = derive2 { name="mvPot"; version="0.1.2"; sha256="0ni953ncm8h4ap0gjimlxjypgjaj2crlx4vscqi7a158hphahj2g"; depends=[evd gmp MASS numbers]; }; mvProbit = derive2 { name="mvProbit"; version="0.1-8"; sha256="07dizclqjlwj29yb3xwjihjh8kmn6jiq5cpf8rcirylzykfdv3wk"; depends=[abind bayesm maxLik miscTools mvtnorm]; }; - mvQuad = derive2 { name="mvQuad"; version="1.0-5"; sha256="0byxp30s5pc7mqwza6x8czqgvqbk2xhb9mq0lmkwhk78y80954jv"; depends=[data_table rgl statmod]; }; - mvSLOUCH = derive2 { name="mvSLOUCH"; version="1.3"; sha256="079iqb4rgh0r0q7hg7fw9wqv8jhfd7789izy8wa9hjilmgq8rbba"; depends=[ape corpcor mvtnorm numDeriv ouch]; }; + mvQuad = derive2 { name="mvQuad"; version="1.0-6"; sha256="016477dhjdkqiadc631vzpbp967mn4yli6by3s1k348mlfirwsi3"; depends=[data_table statmod]; }; + mvSLOUCH = derive2 { name="mvSLOUCH"; version="1.3.2"; sha256="142ldrd3y335z9dsgk9g8fd9ikg0wqfgmr45by39f44gnxsmbvzi"; depends=[ape corpcor mvtnorm numDeriv ouch]; }; mvShapiroTest = derive2 { name="mvShapiroTest"; version="1.0"; sha256="0zcv5l28gwipkmymk12l4wcj9v047pr8k8q5avljdrs2a37f74v1"; depends=[]; }; - mvabund = derive2 { name="mvabund"; version="3.11.5"; sha256="1l7icsivywjqmwndqhq0d28wbim68y4y8dkb17pw308n9kn5p7d4"; depends=[MASS Rcpp RcppGSL statmod tweedie]; }; + mvabund = derive2 { name="mvabund"; version="3.12"; sha256="1njszq4fh7ffbr18yd1r23gya33klk5kpzaj414ijp3hwj24wppm"; depends=[MASS Rcpp RcppGSL statmod tweedie]; }; mvbutils = derive2 { name="mvbutils"; version="2.7.4.1"; sha256="1vs97yia78xh35sdfv5pj3ddqmy83qgamvyyh9gjg0vdznqhffzg"; depends=[]; }; mvc = derive2 { name="mvc"; version="1.3"; sha256="0kmh6vp7c2y9jf71f4a29b0fxcl0h7m4p8wig4dk3fi7alhjf7ym"; depends=[rattle]; }; + mvcluster = derive2 { name="mvcluster"; version="1.0"; sha256="0yfl31scdgsiljvpv1yxc5bwwzr6kbhpjwqh2kql7xf0m0hc1pr4"; depends=[Rcpp RcppArmadillo]; }; mvctm = derive2 { name="mvctm"; version="1.0"; sha256="1naxjh2k3vv4wlpzzx0y2zwvbn4kdqyls8a8qx6bz609ynzay5r9"; depends=[Formula MNM nlme quantreg Rfit]; }; mvcwt = derive2 { name="mvcwt"; version="1.3"; sha256="0fqdyypmszm00rpl04z8kiiw6jd416a0b2rap3dqq3kchnz8h4s2"; depends=[foreach RColorBrewer]; }; + mvdalab = derive2 { name="mvdalab"; version="1.1"; sha256="18lwhplwp87dcvxzvyah3g98b5jrs91ifwk2hwn5a1gs733va989"; depends=[car dummies ggplot2 MASS moments penalized plyr reshape2 sn]; }; mvglmmRank = derive2 { name="mvglmmRank"; version="1.1-2"; sha256="1051l10fbr7m9rmrlvj98660f0pn992n3vxiwnhml07wvvdknw3d"; depends=[Matrix numDeriv]; }; - mvinfluence = derive2 { name="mvinfluence"; version="0.6"; sha256="1cd5p6cl2zln8madjf3vsbmqlg4nsklzzy6ngdd5glj1a9qapd6c"; depends=[car heplots]; }; - mvmesh = derive2 { name="mvmesh"; version="1.2"; sha256="0461yd21fpgc8ibzg6x7b2lv2zy42wx8w4w6r4h8hgsav68vilzm"; depends=[abind geometry rcdd rgl SimplicialCubature]; }; + mvinfluence = derive2 { name="mvinfluence"; version="0.8"; sha256="08p5hxqa8qp8g52w2d3jqbjzrv607fdm80k6vwaz63fxhk8h82wq"; depends=[car heplots]; }; + mvmesh = derive2 { name="mvmesh"; version="1.4"; sha256="14yk09s1ym4p9nijxqasd3060hncmr1br7lv9rk9vm96bgi6l1rc"; depends=[abind geometry rcdd rgl SimplicialCubature]; }; mvmeta = derive2 { name="mvmeta"; version="0.4.7"; sha256="1yadaviq66wdfs0dipn6gxk7jqvzwzjdr8lkfggdsl4vyyi9pwip"; depends=[]; }; mvnTest = derive2 { name="mvnTest"; version="1.1-0"; sha256="0p37skzpljzz19x1hwh2hbxqins19zkbz7nlgfws5pgp9apazafq"; depends=[MASS mvtnorm]; }; - mvna = derive2 { name="mvna"; version="1.2-3"; sha256="1gwv17j6w9c38bqvnasv9kfigbdxiqkzwj89gqmkxgw715f9nnpp"; depends=[lattice]; }; - mvnfast = derive2 { name="mvnfast"; version="0.1.4"; sha256="0bhm1g8wnq389ca75lc6hs2g1xin83smwhc8qwik8gria7r2zymf"; depends=[BH Rcpp RcppArmadillo]; }; + mvna = derive2 { name="mvna"; version="2.0"; sha256="0qy4s8v20ccjdgqj3lgnl903b7m1rgc5lq8w66d5dl41s0jlnmx6"; depends=[lattice]; }; + mvnfast = derive2 { name="mvnfast"; version="0.2.0"; sha256="0r33jigwbj01isrc40rgisjy3nqn7yynmlwdxn7k8z06pg7mbxrm"; depends=[BH Rcpp RcppArmadillo]; }; mvngGrAd = derive2 { name="mvngGrAd"; version="0.1.5"; sha256="0ir4pakfb2jq84rbfqix6rph8q6cgadjdn49rrdl4439b8hlsg8k"; depends=[]; }; mvnmle = derive2 { name="mvnmle"; version="0.1-11"; sha256="02mpmrr22cqb3v8x7kydgg715yl3lrdgzgdqpchmp0xrl2db8gq4"; depends=[]; }; mvnormtest = derive2 { name="mvnormtest"; version="0.1-9"; sha256="1iaxjwp7bgxhaa4xqvgqb61316mq2fb0452d0pabhmbxkvmvdnj6"; depends=[]; }; mvnpermute = derive2 { name="mvnpermute"; version="1.0.0"; sha256="0mbyj5i5vysrnl3pgypl0cjf3sylsvzfl1pcxkn0q16560vqh2ba"; depends=[]; }; - mvoutlier = derive2 { name="mvoutlier"; version="2.0.6"; sha256="00kim5i8xdbaqc0l16w1pif5yfqf741x686lq6drb243jl89rfjv"; depends=[robCompositions robustbase sgeostat]; }; + mvoutlier = derive2 { name="mvoutlier"; version="2.0.8"; sha256="07a2pv8bw5k0faiy0skdchg7c0n236saq5d8plqq7234n3rjl8pg"; depends=[robCompositions robustbase sgeostat]; }; mvprpb = derive2 { name="mvprpb"; version="1.0.4"; sha256="1kcjynz9s7vrvcgjb9sbqv7g50yiymbpkpg6ci34wznd33f7nrxm"; depends=[]; }; mvrtn = derive2 { name="mvrtn"; version="1.0"; sha256="0k0k76wk5zq0cjydncsrb60rdhmb58mlf7zhclhaqmli1cy697k8"; depends=[]; }; mvsf = derive2 { name="mvsf"; version="1.0"; sha256="1krvsxvj38c5ndvnsd1m18fkqld748kn5j2jbgdr3ca9m3i5nlwf"; depends=[mvnormtest nortest]; }; - mvtboost = derive2 { name="mvtboost"; version="0.4.1"; sha256="1sxbldbcy3md4bni5lgs8v9sl67hjphlhglzbq4nx48iclvixcq6"; depends=[gbm RColorBrewer]; }; + mvst = derive2 { name="mvst"; version="1.0.1"; sha256="0sv8pd1524pr3xpxplq468dxfd0wipdr41awqwvcljpw5wgl34qa"; depends=[MCMCpack mnormt mvtnorm]; }; + mvtboost = derive2 { name="mvtboost"; version="0.5.0"; sha256="06zgx1c2470bh3x6s2awzkxbyij6bvzv23xbvamg77v5pz5bjj6h"; depends=[gbm RColorBrewer]; }; mvtmeta = derive2 { name="mvtmeta"; version="1.0"; sha256="0g0d4lrz854wkd0dz5aiad54i46aqkfhsq6cpbsfv0w5l2kwiqqz"; depends=[gtools]; }; mvtnorm = derive2 { name="mvtnorm"; version="1.0-5"; sha256="1pc1mi2h063gh4a40009xk5j6pf5bm4274i5kycln38dixsry3yh"; depends=[]; }; mvtsplot = derive2 { name="mvtsplot"; version="1.0-1"; sha256="0g5grrha77rsnkfasw5pxnpmkl7vgb728ms8apyg8xnbmgilg9vv"; depends=[RColorBrewer]; }; mwa = derive2 { name="mwa"; version="0.4.1"; sha256="0bd4i1zzwmcsrm2bg14f528yav5hb6qxcd7x4i5rwdcx1hlx27bw"; depends=[cem MASS rJava]; }; - mwaved = derive2 { name="mwaved"; version="1.1.2"; sha256="0z9p4756azl506lg3583a5zrjz0dl55lhmjml1xifnk868gld6xs"; depends=[Rcpp shiny]; }; + mwaved = derive2 { name="mwaved"; version="1.1.4"; sha256="09v3cx2scp8fjcjzsdf7k2xl5y2491hbp25mnbjvm6v16hi2g180"; depends=[Rcpp shiny]; }; mxkssd = derive2 { name="mxkssd"; version="1.1"; sha256="0m9763dqrk8qkrvp18bsv96jv0xhc2m8sbxdk6x3w6kdjcl663p2"; depends=[]; }; - myTAI = derive2 { name="myTAI"; version="0.3.0"; sha256="0j0wdc7p98h14l51f0mgl6k7ns8fb93y12z7mjik4dpakzsanl68"; depends=[doParallel dplyr edgeR fitdistrplus foreach ggplot2 nortest RColorBrewer Rcpp reshape2 taxize]; }; + myTAI = derive2 { name="myTAI"; version="0.4.0"; sha256="15ax5hwgqqyf5qmpmnjqvszwxyvvasmmxc03m53f7gdnpmv2wpg8"; depends=[doParallel dplyr edgeR fitdistrplus foreach ggplot2 nortest RColorBrewer Rcpp readr reshape2 taxize]; }; mycobacrvR = derive2 { name="mycobacrvR"; version="1.0"; sha256="1xd9ackzdd8db6bayza0bg4n256mi9rdqih0cdc0nl212c3iz75g"; depends=[]; }; mycor = derive2 { name="mycor"; version="0.1"; sha256="1ibcxl9v2d2mxpwad0rv5dw1j645rrg05f4aqvyhyd40hz9823mr"; depends=[lattice]; }; myepisodes = derive2 { name="myepisodes"; version="1.1.1"; sha256="0xk9bwgpl630nhc8qa2pc0rwqbqk3haxnp78gfxq6sn6z7i44k1p"; depends=[XML]; }; mztwinreg = derive2 { name="mztwinreg"; version="1.0-1"; sha256="1rg6ikaqdrc7q44s3r3km8h45prnvcpzpxd7nxbmh209iz9j19ai"; depends=[mclogit rms]; }; nCDunnett = derive2 { name="nCDunnett"; version="1.1.0"; sha256="0q2db1pixqr0wbx4bd05c98i1p0vgaqsfa1iwjxr08c62a5xhkks"; depends=[]; }; - nCal = derive2 { name="nCal"; version="2015.3-3"; sha256="0vj6l8w29ymj1v18mb4qyw6w1xpmwx5bvil4kjb82gccsb95ir10"; depends=[drc gdata gWidgets kyotil]; }; + nCal = derive2 { name="nCal"; version="2016.7-31"; sha256="12zj22myfxqxyq7bl669ngyk6yb3i9gsg00qqw5a5x2w95imwv20"; depends=[drc gdata gWidgets kyotil]; }; nFCA = derive2 { name="nFCA"; version="0.3"; sha256="1jyyzagmppm3i7vh3ia4ic0zql1w04f66z81v0zpdihd4cbl5ra7"; depends=[]; }; nFactors = derive2 { name="nFactors"; version="2.3.3"; sha256="016d76yfxz7gx7zz5dgwjmj2c5m6kxdmqj0lln5w6d70r9g1kxg7"; depends=[boot lattice MASS psych]; }; - nLTT = derive2 { name="nLTT"; version="1.1.1"; sha256="0z3d61s6dfkvjv60qyx2mv5f0w1jg0qh5kb3vch3m2am5rbg9fq3"; depends=[ape coda deSolve]; }; + nLTT = derive2 { name="nLTT"; version="1.3.1"; sha256="1wha26lcgk2kw48vyiws1ciyp8x6d7nmkrahh5b8w23ns6bqpngf"; depends=[ape coda deSolve]; }; nabor = derive2 { name="nabor"; version="0.4.6"; sha256="0kd0h8n5yrn16vrfdchdiqzws05q0fm8z577p20dm18gdcs2vbxv"; depends=[BH Rcpp RcppEigen]; }; - nadiv = derive2 { name="nadiv"; version="2.14.2"; sha256="1w3mvid500jcxj79q3104cb40akchpgdfchwljvabv3q4wlj1kzj"; depends=[Matrix]; }; + nadiv = derive2 { name="nadiv"; version="2.14.3.1"; sha256="08276bakyrn9d9vh08yzan60kigsihwfhgx788gwp6pk8v6m25wa"; depends=[Matrix]; }; + naivebayes = derive2 { name="naivebayes"; version="0.9.1"; sha256="051mg1idim75k181v4n8s5rji94rwy9c75yjkavjhr4brhizqy8f"; depends=[]; }; namespace = derive2 { name="namespace"; version="0.9.1"; sha256="1bsx5q19l7m3q2qys87izvq06zgb22b7hqblx0spkvzgiiwlq236"; depends=[]; }; nanop = derive2 { name="nanop"; version="2.0-6"; sha256="007gdc93pk0vpfmsw7zgfma2k1045n2cxwwsyy276smy0ys9fdhp"; depends=[distrEx rgl]; }; + nanotime = derive2 { name="nanotime"; version="0.1.1"; sha256="1jir0hhksa4shfn7paln9s3ccsmmyl70hlsk9q5glwi87j6mhlnn"; depends=[bit64 RcppCCTZ zoo]; }; + naptime = derive2 { name="naptime"; version="1.2.2"; sha256="0jzzs7iphcan6vf1bc3h82gpplnlkw9vhg6366izr2b7vycxafi5"; depends=[anytime lubridate]; }; + narray = derive2 { name="narray"; version="0.1.1"; sha256="0n620wzhmlyjkbbwr0py2xfk0vj59a5zyr4d93iyplcrjg91n6zg"; depends=[abind pryr reshape2 stringr]; }; + nasadata = derive2 { name="nasadata"; version="0.9.0"; sha256="0y88qdy8c1y0prsajxic5vdqfixv9knjsbhw3vbfac8wv3a69bjl"; depends=[dplyr jsonlite plyr png]; }; nasaweather = derive2 { name="nasaweather"; version="0.1"; sha256="05pqrsf2vmkzc7l4jvvqbi8wf9f46854y73q2gilag62s85vm9xb"; depends=[]; }; - nat = derive2 { name="nat"; version="1.8.1"; sha256="0w6gsq4vcn8xh05yxb4ipgn69n8lba9ia56ahx2q7dw8mj9mpk9v"; depends=[digest filehash igraph nabor nat_utils plyr rgl yaml]; }; - nat_nblast = derive2 { name="nat.nblast"; version="1.5"; sha256="1slpk126fwgn90j3aazlf3pw2ij050dghc1yqadv6mjcj82qpm5i"; depends=[dendroextras nabor nat plyr rgl spam]; }; + nat = derive2 { name="nat"; version="1.8.7"; sha256="14mfjlhf08ypbml8zqz90z80dljqk9ns7mk1h0s0fma308xwab7m"; depends=[digest filehash igraph nabor nat_utils plyr rgl yaml]; }; + nat_nblast = derive2 { name="nat.nblast"; version="1.6.2"; sha256="0b2gzyzszj2v5girxyv31nvds0837lzvim7x7bs9h897yrxs57k8"; depends=[dendroextras nabor nat plyr rgl spam]; }; nat_templatebrains = derive2 { name="nat.templatebrains"; version="0.6.2"; sha256="1yc0k5nsg6nmxf3wmhr5prbz2l820z62xjayi83mz3jpzwilz4by"; depends=[digest igraph nat rappdirs rgl]; }; nat_utils = derive2 { name="nat.utils"; version="0.5.1"; sha256="12g87ar795xfbz7wljksb24x9hqvcirjr50y4mbpx1427r0l7clv"; depends=[]; }; - naturalsort = derive2 { name="naturalsort"; version="0.1.2"; sha256="0m8a8z0n5zmmgpmpn5w87j2jfsz1igz3x133z3q25h8jlyaxy750"; depends=[]; }; + natserv = derive2 { name="natserv"; version="0.1.4"; sha256="0qwf7lapx5gchk8xmdnmxr10j5dnkp52mqnh1ja216z7l841cl07"; depends=[crul data_table tibble xml2]; }; + naturalsort = derive2 { name="naturalsort"; version="0.1.3"; sha256="0mz801y9mzld9ypp3xmsjw2d8l9q97sdnv09wrci9xi3yg2sjf6d"; depends=[]; }; + nbc4va = derive2 { name="nbc4va"; version="1.0"; sha256="0y1qpkzjr327qyvmqf129m400rvn6gwk72ccnly6cqq53icrarn4"; depends=[]; }; nbconvertR = derive2 { name="nbconvertR"; version="1.0.2"; sha256="1dc9jxfibvb27qwiykj93322nb1ahwrg69zqcc0p9xp0rpsim02w"; depends=[]; }; - nbpMatching = derive2 { name="nbpMatching"; version="1.5.0"; sha256="16g45yzia748qhmd4imib33qs8i1b1qy5h6gmlr9rr6dwbnv2fig"; depends=[Hmisc MASS]; }; + nbpMatching = derive2 { name="nbpMatching"; version="1.5.1"; sha256="0f90k9vq05gkc0sgywb98frig63df0ih4z41dq7m2inx1zk5rqns"; depends=[Hmisc MASS]; }; ncappc = derive2 { name="ncappc"; version="0.2.1.1"; sha256="19wq7ihcr8989xpzf1dsxz1kwwzqvsx2mwcciqv9204k4fc94zjc"; depends=[dplyr ggplot2 gridExtra gtable knitr lazyeval readr reshape2 scales testthat xtable]; }; + ncar = derive2 { name="ncar"; version="0.3.1"; sha256="1mlqmz4737827dl131lqg5mbn8sk4ghiazlicdp99cjq5vr8fk7h"; depends=[dplyr Hmisc lubridate measurements tidyr]; }; ncbit = derive2 { name="ncbit"; version="2013.03.29"; sha256="0f07h8v68119rjvgm84b75j0j7dvcrl6dq62vp41adlm2hgjg024"; depends=[]; }; ncdf_tools = derive2 { name="ncdf.tools"; version="0.7.1.295"; sha256="1jgxivmg2gzvkn09n13i5xr1v0xcyp5ckhwxz6g5kdh9z2dkjhc2"; depends=[abind chron JBTools plotrix raster RColorBrewer RNetCDF]; }; ncdf4 = derive2 { name="ncdf4"; version="1.15"; sha256="0kad69py4nhlsl4xmsfdisx0kzcjch91c0m786h80v3w67s9i0nm"; depends=[]; }; ncdf4_helpers = derive2 { name="ncdf4.helpers"; version="0.3-3"; sha256="051akd7r6zx805a0xwcs95q5sd8alag0f1gzqjk3n188q8r3ji5j"; depends=[abind ncdf4 PCICt]; }; - ncf = derive2 { name="ncf"; version="1.1-6"; sha256="1c0ia6lv36lvqsl16s0a450adkab366k28bcdhff3g31i04xh8mk"; depends=[]; }; + ncf = derive2 { name="ncf"; version="1.1-7"; sha256="0r3xhpinkcnkzc855q8ddd889v12snx4n1g8jyw9cnmrki8n2hxh"; depends=[]; }; ncg = derive2 { name="ncg"; version="0.1.1"; sha256="1jzkzp61cc5jxmdnl867lcrjjm7y2iw9imzprbd098p1j3w8fvj7"; depends=[]; }; - ncvreg = derive2 { name="ncvreg"; version="3.5-1"; sha256="0dmg8kskihy71j0di4xy2q17bxhyl5803fm6lmsnayziz6fpis6d"; depends=[]; }; + ncvreg = derive2 { name="ncvreg"; version="3.8-0"; sha256="19yir4bwinpd6rgk6ncg3x42qpx3d884f91qq9gl16y9kc4blp87"; depends=[]; }; + ndjson = derive2 { name="ndjson"; version="0.2.0"; sha256="1y6hjcip18mazss7g888pydywb07hkfrk6ams0sm71yckyc865lb"; depends=[data_table dtplyr Rcpp Rcpp11]; }; ndl = derive2 { name="ndl"; version="0.2.17"; sha256="08h01rw7gsa31zp91q2rsw1ba9yf0fyhz3w8s9xq5788qwc80280"; depends=[Hmisc MASS Rcpp]; }; - ndtv = derive2 { name="ndtv"; version="0.9.0"; sha256="1b35xladdldy801w05d9n40k8vnrzai4a3jywhkbmg448n2q8xy8"; depends=[animation base64 jsonlite MASS network networkDynamic sna statnet_common]; }; + ndtv = derive2 { name="ndtv"; version="0.10.0"; sha256="1j4g5qclfbw7fkykaclrsb2d70vy40fd1rgr1n73qyrkx0fyym44"; depends=[animation base64 jsonlite MASS network networkDynamic sna statnet_common]; }; + nearfar = derive2 { name="nearfar"; version="1.0"; sha256="1fafsb392dm16388a17sfwfgnxwbr8y8v7sdvbfv46sdndwaif1z"; depends=[AER GenSA MASS nbpMatching sem]; }; neariso = derive2 { name="neariso"; version="1.0"; sha256="1npfd5g5xqjpsm5hvhwy7y84sj5lqw9yzbnxk6aqi80gfxhfml4c"; depends=[]; }; - needs = derive2 { name="needs"; version="0.0.2"; sha256="1w24jxkm456by9fm5wmdxv8gspd78p95jar9b22x1r9jry4nfmhk"; depends=[]; }; + neat = derive2 { name="neat"; version="1.0"; sha256="191bx96cmrzy4jd5x96h1vw01ii60jy7mlmcl5lzwkxrbv4zr6k7"; depends=[]; }; + needs = derive2 { name="needs"; version="0.0.3"; sha256="16dkjpijz3rz7kd5ggxsdg55iwd42nll1vk6g5ix4xdbqrx6cp9x"; depends=[]; }; needy = derive2 { name="needy"; version="0.2"; sha256="1ixgpnwrg6ph1n5vy91qhl1mqirli9586nzkmfvzjrhdvrm0j5l0"; depends=[]; }; - negenes = derive2 { name="negenes"; version="1.0-3"; sha256="19xlw3l90gwan0p40r0s2xy0yv8id32h1i56496spgi02vh3pnsl"; depends=[]; }; + negenes = derive2 { name="negenes"; version="1.0-5"; sha256="0fdhc0v0b820wfg3sypvya7zhg7mhfmdbfiwn1lj3a2xg01zvc2n"; depends=[]; }; neldermead = derive2 { name="neldermead"; version="1.0-10"; sha256="1snavf90yb12sydic7br749njbnfr0k7kk20fy677mg648sf73di"; depends=[optimbase optimsimplex]; }; - neotoma = derive2 { name="neotoma"; version="1.5.0"; sha256="13xc9sp25diw8y0fsasgl6aq34fzv4xlnrdfg4dch9zr3dnwc92h"; depends=[httr jsonlite plyr reshape2 xml2]; }; + neotoma = derive2 { name="neotoma"; version="1.6.2"; sha256="023dpcrhhq8daa0c4viccqs9y19gi05srz4d985diaq7yxjs9vhz"; depends=[analogue httr jsonlite plyr reshape2 xml2]; }; nephro = derive2 { name="nephro"; version="1.1"; sha256="06lxkk67n5whgc78vrr7gxvnrz38pxlsj4plj02zv9fwlzbb9h6p"; depends=[]; }; nestedRanksTest = derive2 { name="nestedRanksTest"; version="0.2"; sha256="0r08jp8036cz2dl1mjf4qvv5qdcvsrad3cwj88x31xx35c4dnjgj"; depends=[]; }; netClass = derive2 { name="netClass"; version="1.2.1"; sha256="04yrj71l5p83rpwd0iaxdkhm49z9qp3h6b7rp9cgav244q060m9y"; depends=[AnnotationDbi graph igraph kernlab Matrix ROCR samr]; }; + netCoin = derive2 { name="netCoin"; version="0.2.2"; sha256="18ffpkcqhpw3b5jrlv63av8v2hhpgz8pqvg5mwc5mmqgar0cffb0"; depends=[igraph Matrix]; }; netassoc = derive2 { name="netassoc"; version="0.6.2"; sha256="01h0nnyrgv08bxyl01lqsqnj69bhkwci692h77vfa7cf8rsm67kg"; depends=[corpcor huge igraph infotheo rags2ridges vegan]; }; - netcoh = derive2 { name="netcoh"; version="0.1"; sha256="0id86wvws213695sv81mrmf4chz9xfyhaf58q1vfhq8yxfhw1fnd"; depends=[Matrix Rcpp RcppArmadillo]; }; - netdiffuseR = derive2 { name="netdiffuseR"; version="1.16.2"; sha256="1ck5sxmwsraggznf1i2z8q2kmjs75nf63y6s2zik14ini5dd5qyw"; depends=[boot Matrix Rcpp RcppArmadillo sna SparseM]; }; + netcoh = derive2 { name="netcoh"; version="0.2"; sha256="0q60hvyparlwdww6as6hcdzfs6q3n8z1rfpj53r5q2s77x6q07xx"; depends=[Matrix Rcpp RcppArmadillo]; }; + netdiffuseR = derive2 { name="netdiffuseR"; version="1.17.0"; sha256="15yq903li51s2mbjp7bqrvk2zcf2yjmvvma2ynp325aqhwgvisf7"; depends=[boot igraph MASS Matrix network Rcpp RcppArmadillo sna SparseM]; }; netgen = derive2 { name="netgen"; version="1.3"; sha256="1iywpl9n1yplnd38dff8m9mz1vlfbvplw393grhpav5czcknj160"; depends=[BBmisc checkmate ggplot2 igraph lhs lpSolve mvtnorm stringr]; }; - netgsa = derive2 { name="netgsa"; version="2.0"; sha256="04id2wcrmi0lqvn4a8qhqkc3z076b8xd7jhw9hsmaz21g9cxdfx8"; depends=[corpcor cvTools glasso glmnet igraph]; }; - netmeta = derive2 { name="netmeta"; version="0.8-0"; sha256="0qadg3h9aa3qx51hvqikzb5s087r5ihmp6ffxg5x1bmw86yfi2bq"; depends=[magic meta]; }; + netgsa = derive2 { name="netgsa"; version="3.0"; sha256="0cqyiilpxhdi6zmibn85y1aqwpcs1aialz34klakmllzn6kvdsng"; depends=[corpcor glasso glmnet igraph Matrix]; }; + netmeta = derive2 { name="netmeta"; version="0.9-2"; sha256="1hzmlac8kpgh27783fir27dwvzga1v00098qy8z955iy4nkpm1pq"; depends=[magic meta]; }; nets = derive2 { name="nets"; version="0.8"; sha256="10h6sqy9jw2a909nzmzd5x9cjg3w4wpqwikp23k4q9fj71aswd5v"; depends=[igraph]; }; nettools = derive2 { name="nettools"; version="1.0.1"; sha256="13fw316r31g9cjlbyy9qfccsyagxb6pyvn5k32f166b7vj92mk1q"; depends=[combinat dtw igraph Matrix minerva minet rootSolve WGCNA]; }; network = derive2 { name="network"; version="1.13.0"; sha256="11sg330xb7gcnl3f6lwhhjdabz6mk43828i2np635pqw4s4yl13s"; depends=[]; }; - networkD3 = derive2 { name="networkD3"; version="0.2.8"; sha256="0w3wax4sfi67k9qjfkz5xfkqzr7ssmkm912snvfbxyynclkzbdrj"; depends=[htmlwidgets]; }; + networkD3 = derive2 { name="networkD3"; version="0.3"; sha256="0g1l8a6qlpxylxnnavjcwdjx6v8nxkxzigilywyqhqhmpcsnp7bg"; depends=[htmlwidgets igraph magrittr]; }; networkDynamic = derive2 { name="networkDynamic"; version="0.9.0"; sha256="1949fbcw0gq8lsm6rx5d5mpj1y9k4rk2v0pmm1kxi5igi6yd8lg9"; depends=[network statnet_common]; }; networkDynamicData = derive2 { name="networkDynamicData"; version="0.2.1"; sha256="176al8jp0gha6yzhyn5flmyackmmdnh1h8sasqrdcmba7ha7cya6"; depends=[network networkDynamic]; }; networkTomography = derive2 { name="networkTomography"; version="0.3"; sha256="1hd7av231zz0d2f9ql5p6c95k7dj62hp0shdfshmyfjh8900amw7"; depends=[coda igraph KFAS limSolve plyr Rglpk]; }; - networkreporting = derive2 { name="networkreporting"; version="0.0.1"; sha256="1vfvx5gf90p31gy6kcv7l2ibzbfl382gffa79dl8gascbsg6s8z8"; depends=[functional ggplot2 plyr reshape2 stringr]; }; + networkreporting = derive2 { name="networkreporting"; version="0.1.1"; sha256="1ssbz8lw4mlwcblwfbyffvayvb2gmihq4qlz5q9222fn4aa3raxd"; depends=[dplyr functional ggplot2 lazyeval plyr reshape2 stringr surveybootstrap]; }; networksis = derive2 { name="networksis"; version="2.1-3"; sha256="1kvil3qs7xd94ak9jgvj1nss55gjg0y7d35zmass9h1hjkcrq7bg"; depends=[network]; }; neuRosim = derive2 { name="neuRosim"; version="0.2-12"; sha256="1hsnw9xipdr74fydq9013252ycbi9igh28s0j4dbdx52pv3iixzl"; depends=[deSolve]; }; neural = derive2 { name="neural"; version="1.4.2.2"; sha256="05hrqgppgwp38rdzw86naglxj0bz3wqv04akq7f0jxbbjc6kwy4j"; depends=[]; }; - neuralnet = derive2 { name="neuralnet"; version="1.32"; sha256="0p9r5j8q0flv15wn5s6qi9if7npna107l1ffv37nzx1b4vgswnl9"; depends=[MASS]; }; + neuralnet = derive2 { name="neuralnet"; version="1.33"; sha256="14ga04mcd793v9a2584jb9l7n20kw00fgy3gayfwrkr1j39szdls"; depends=[MASS]; }; + neurobase = derive2 { name="neurobase"; version="1.9.2"; sha256="048z1m8kx5g91v6hram4xchyfa28kkp8cjc8rkdvs6r1wrflp0a3"; depends=[matrixStats oro_nifti R_utils RNifti]; }; neuroblastoma = derive2 { name="neuroblastoma"; version="1.0"; sha256="0hs87fvwaq53xxbh2dw3hjsmf1zkyqli9qyacxf72fnkyhhl8b45"; depends=[]; }; neuroim = derive2 { name="neuroim"; version="0.0.6"; sha256="00cjr6pkip6zi2d0q3qbn3lb3k0z82v6c19qslvgpa9n0g63dr5p"; depends=[abind assertthat hash iterators Matrix Rcpp readr rgl stringr yaImpute]; }; - ngram = derive2 { name="ngram"; version="1.1"; sha256="0p5wm55anch1i0y3478f5d4sivs7q8j3kwlg89nk3337win06499"; depends=[]; }; + neuropsychology = derive2 { name="neuropsychology"; version="0.3.0"; sha256="17jil4xsys676n73icpx5b9d1jilqq190xcdqjq7da11pvig76i9"; depends=[BayesFactor dplyr ggcorrplot ggplot2 Hmisc htmlTable lme4 MuMIn png prettyR tm wordcloud2]; }; + ngram = derive2 { name="ngram"; version="3.0.2"; sha256="01ji3whn10m6z29vhi01vpjl09ci1r52arrjp73s7z3y0l6pj9r7"; depends=[]; }; ngramrr = derive2 { name="ngramrr"; version="0.2.0"; sha256="1p8s4p3h27g647rxx9qjfad5dzbngjbmvhw4gz0jbsmfqrsf72by"; depends=[tau tm]; }; - ngspatial = derive2 { name="ngspatial"; version="1.0-5"; sha256="0dd7gm6irq08054ndj2gykz4nnfqfq3wbivg6fmlkdnn18kbckkk"; depends=[batchmeans Rcpp RcppArmadillo]; }; - nhanesA = derive2 { name="nhanesA"; version="0.6.3"; sha256="0g4nhm1y6wqdvc1vf8r7m0yhvfmzj3hl4xil6m9vi2h8yp2sblv0"; depends=[Hmisc magrittr plyr rvest stringr xml2]; }; + ngspatial = derive2 { name="ngspatial"; version="1.1-3"; sha256="08g1786vxb544r6i6mccd4gzzgcq35m0af65326m82xxyffiv6gw"; depends=[batchmeans lattice Rcpp RcppArmadillo]; }; + nhanesA = derive2 { name="nhanesA"; version="0.6.4.3.3"; sha256="09mpxmk8w48hc14167jd2xifnj0kjz9h3h76bdnbb33wvhkn4jld"; depends=[Hmisc magrittr plyr rvest stringr xml2]; }; nhlscrapr = derive2 { name="nhlscrapr"; version="1.8"; sha256="0y2shw3g84flh88a15czdsb62xwdqxhvzkn4kpbn0k9ddyfzxc48"; depends=[biglm bitops RCurl rjson]; }; - nice = derive2 { name="nice"; version="0.4"; sha256="1alq8n8pchn9v0fvwrifdisazkh519x109bqgnpgnwf79wblmnhy"; depends=[]; }; + nhstplot = derive2 { name="nhstplot"; version="1.0.1"; sha256="1f07gfmbx80as54mlzdbs2z1vzc78rjy6i6m7zd4jplgcqdcynws"; depends=[ggplot2]; }; + nice = derive2 { name="nice"; version="0.4-1"; sha256="1p8vmimiq9sbjvbx6c2wqwwkpnzw4kkdvjry6qyadmm3frwhj5qb"; depends=[]; }; nicheROVER = derive2 { name="nicheROVER"; version="1.0"; sha256="0sa7wfpzkin78vz48vwa5iac82v5l1s3zczdxz8sc2kyg22fj0aw"; depends=[mvtnorm]; }; + nima = derive2 { name="nima"; version="0.3.0"; sha256="10g0a8qa64sk16xrya3qhrlrjbjyq7ndv208xz36knp5az2n27ak"; depends=[assertthat ggplot2 gridExtra plyr survival]; }; + nimble = derive2 { name="nimble"; version="0.6-3"; sha256="0j52kqr53lxmsc7dsv67mbqr5lg51vc2l7fqnv6qmrnzl4mn5ds0"; depends=[coda igraph]; }; nivm = derive2 { name="nivm"; version="0.3"; sha256="111jkgirgsl1j36xgwi81wzwxial3vdw8mqzi1faldxxd9a2cixm"; depends=[bpcp ssanv]; }; - nlWaldTest = derive2 { name="nlWaldTest"; version="1.0.1"; sha256="1rwpkkddivpcamhsp22nmy5gz2006y9kbdzj8lhh20s1vsyhn2b3"; depends=[numDeriv stringr]; }; - nleqslv = derive2 { name="nleqslv"; version="3.0"; sha256="0f5cnpz4kmpli7haczhv1qkp2f386n1yq7bdwgaxy0xa96cyyzmc"; depends=[]; }; - nlme = derive2 { name="nlme"; version="3.1-126"; sha256="1vvyzypr88sp2c12nngfzsc1m8w5a416ph28cawzji25m0b1py6i"; depends=[lattice]; }; + nlWaldTest = derive2 { name="nlWaldTest"; version="1.1.3"; sha256="1cppdz8qvigjdz4sgr1gm2j09zi407xxmryc28zc7ps7rvgy344h"; depends=[]; }; + nleqslv = derive2 { name="nleqslv"; version="3.1"; sha256="0vvyyafighfck8f9imcpqlr1b5v3znsr5czgl5k4b02jymdwrhvs"; depends=[]; }; + nlme = derive2 { name="nlme"; version="3.1-131"; sha256="0k2nvdzhic6bzhfsbq6la6q6a1i5nlj4pnh6lpdxiiwvxdks3nkr"; depends=[lattice]; }; nlmeODE = derive2 { name="nlmeODE"; version="1.1"; sha256="1zp1p98mzbfxidl87yrj2i9m21zlfp622dfnmyg8f2pyijhhn0y2"; depends=[deSolve lattice nlme]; }; nlmeU = derive2 { name="nlmeU"; version="0.70-3"; sha256="05kxymgybziiijpb17bhcd9aq4awmp5km67l2py9ypakivi0hc6l"; depends=[nlme]; }; nlmrt = derive2 { name="nlmrt"; version="2016.3.2"; sha256="1g0qq0a933ay65gkp04qgn2wqk6vw79pj2a228c2ski4rcmkjxyn"; depends=[]; }; @@ -5800,12 +7229,16 @@ in with self; { nlrr = derive2 { name="nlrr"; version="0.1"; sha256="09wm8s5sadkhkq9pb3fjk66cb2xn8py46w1d7yp7fjhczh31bjsq"; depends=[Hmisc rms]; }; nls2 = derive2 { name="nls2"; version="0.2"; sha256="0k46i865p6jk0jchy03jiq131pc20h9crn3hygzy305rdnqvaccq"; depends=[proto]; }; nlsMicrobio = derive2 { name="nlsMicrobio"; version="0.0-1"; sha256="0676n78265z00dacmq593c9l2239ii574djm9s7i7w8jk1kdhzx2"; depends=[nlstools]; }; - nlsem = derive2 { name="nlsem"; version="0.6"; sha256="18x3mw8p297b2yq2m3m8fjxs50v9drllkrj4vqni9w4c6v70gz63"; depends=[gaussquad mvtnorm nlme]; }; + nlsem = derive2 { name="nlsem"; version="0.7"; sha256="1g5vnqmqq4swnid3601f1cm0q9w9k802394jd3yac95n8sm05i5g"; depends=[gaussquad lavaan mvtnorm nlme orthopolynom]; }; + nlshrink = derive2 { name="nlshrink"; version="1.0.1"; sha256="0adnr7g3n3brwlvyix8wa7h59gj036l5anv8abqy80ysmfcmsp0y"; depends=[MASS nloptr]; }; nlsmsn = derive2 { name="nlsmsn"; version="0.0-4"; sha256="1gvpy8rq020l64bdw6n7kv354l7gwa2rgxarm6k0mqq7z21fxf58"; depends=[]; }; + nlsr = derive2 { name="nlsr"; version="2017.2.12"; sha256="1fzyfqi6nfzxg0vjlqcvrf6p7qjgvg9qvf4icy13vqs1k70y5v4x"; depends=[digest]; }; + nlstimedist = derive2 { name="nlstimedist"; version="1.0.4"; sha256="10wbkngcx02cjyv188ascrw7aaqg8vvwbr7rgy6q87ch5g7ih35g"; depends=[broom dplyr ggplot2 lazyeval minpack_lm nlstools]; }; nlstools = derive2 { name="nlstools"; version="1.0-2"; sha256="0mjn1j9fqqgr3qgdr0ki4lfbd0yrkanvya4y2483q3wklqa6qvjc"; depends=[]; }; nlt = derive2 { name="nlt"; version="2.1-3"; sha256="1j0xrrbr1hvfda8rvnc17lj96m6cz24faxvwn68ilf7j1ab2lkgn"; depends=[adlift EbayesThresh]; }; nlts = derive2 { name="nlts"; version="0.2-0"; sha256="14kvzc1p4anj9f7pg005pcbmc4k0917r49pvqys9a0a51ira67vb"; depends=[acepack locfit]; }; nmcdr = derive2 { name="nmcdr"; version="0.3.0"; sha256="1557pdv7mqdjwpm6d9zw3zfbm1s8ai3rasd66nigscmlq102w745"; depends=[CDFt]; }; + nmfgpu4R = derive2 { name="nmfgpu4R"; version="0.2.5.2"; sha256="05066rgbbp6kj2d67nzf3d1pf32gypz9ammz4ba88yxblydb3cwk"; depends=[Matrix Rcpp SparseM stringr]; }; nnet = derive2 { name="nnet"; version="7.3-12"; sha256="17amqnw9dpap2w8ivx53hxha2xrm0drwfnj32li0xk41hlz548r7"; depends=[]; }; nnetpredint = derive2 { name="nnetpredint"; version="1.2"; sha256="1c6s9wm6vhylwv4xhp2hkllw18zj8hdr17ls9vlxm9qs3wx1v48w"; depends=[RSNNS]; }; nnlasso = derive2 { name="nnlasso"; version="0.3"; sha256="1n7karlmgq61z9ywfx9xb5wvmxx40ydpnzzazj1xr70qlv5m0qk4"; depends=[]; }; @@ -5813,69 +7246,90 @@ in with self; { nodeHarvest = derive2 { name="nodeHarvest"; version="0.7-3"; sha256="0nh3g50rk9qzrarpf29kijwkz9v60682i0ag77j2ipyvhhbpwpkc"; depends=[quadprog randomForest]; }; nodiv = derive2 { name="nodiv"; version="1.1.4"; sha256="0m12pw4l7lmqn796ac6yn3f9h5h59cv84swb8fk559aw258kpr4s"; depends=[ape picante raster sp vegan]; }; noia = derive2 { name="noia"; version="0.97.1"; sha256="0yldfmnb4ads4s9v9cj1js8zf1w1hxasqq6qjyzwknmvmp7kh62h"; depends=[]; }; - nomclust = derive2 { name="nomclust"; version="0.91.1010"; sha256="02jpzcjclm22bjg59wj4490vh2rp9ma1vqxdnwmppyb478558fz1"; depends=[cluster dummies]; }; + noise = derive2 { name="noise"; version="1.0"; sha256="1a48s9vpz3nc058966lad8hydmg7z0vbzfwcf6nxc9g3c8mw4nig"; depends=[preprocessCore]; }; + nomclust = derive2 { name="nomclust"; version="1.00.1011"; sha256="1mzz1bc8gg9lw5aacmicfzjak212hrbq2wchblljcxxjvkkn87w5"; depends=[cluster dummies]; }; + nomogramEx = derive2 { name="nomogramEx"; version="2.0"; sha256="1as0hbmb37z9izz95x9rd98a0fs4b6zbhzjpgnyq5c1j4219vzs3"; depends=[pracma rms]; }; noncensus = derive2 { name="noncensus"; version="0.1"; sha256="0cfj17bfzddfshhhzv2ijhrp9ylcscmsysswjcsjfxmy3gbkd00q"; depends=[]; }; noncompliance = derive2 { name="noncompliance"; version="0.2.2"; sha256="1lcybgj95z7lz7p26xbsdiv0vvms4ab4f8kad0pclacf1l43v0j6"; depends=[data_table Rcpp]; }; nonlinearTseries = derive2 { name="nonlinearTseries"; version="0.2.3"; sha256="1pcah255hh3lqabxgjb5fsaap4s2d92lvxw9a48l1p4dkmm1lbsx"; depends=[Matrix Rcpp rgl TSA tseries]; }; - nonnest2 = derive2 { name="nonnest2"; version="0.3"; sha256="01j336lms0cinyzjhdgzqlh9hhvxx3lpri195cj2h0ssfzvy4z0z"; depends=[CompQuadForm lavaan mvtnorm sandwich]; }; + nonmem2R = derive2 { name="nonmem2R"; version="0.1.5"; sha256="07ky2s8bfk6qiayj9vv9plwkd4615nkk9vb0aa4bq54m0191zd18"; depends=[lattice latticeExtra MASS mvtnorm xpose4]; }; + nonnest2 = derive2 { name="nonnest2"; version="0.4-1"; sha256="0lgcrxvyyw789hw80lqbxvvxl6z95qxzq9k5lphl5435xqzpfj6f"; depends=[CompQuadForm lavaan mvtnorm sandwich]; }; + nonpar = derive2 { name="nonpar"; version="1.0.0"; sha256="0baavlsnh5hjgmhx42v0vn4c11bcrbssxxc7971g0rk93cgnk5nj"; depends=[]; }; nonparaeff = derive2 { name="nonparaeff"; version="0.5-8"; sha256="1kkn68m7cqlzx3v539cjxw3x5a2y86lvmyv2k98s87m3yvqg0gdk"; depends=[gdata geometry Hmisc lpSolve psych pwt rms]; }; nonrandom = derive2 { name="nonrandom"; version="1.42"; sha256="0icm23hw593322z41wmjkwxqknh2pa9kpzbrch7xw1mhp93sd5ll"; depends=[lme4]; }; - nontarget = derive2 { name="nontarget"; version="1.8"; sha256="01prm3lixr3qai3m8d83nmgx501mmrj45kx1k2xg1cy1n2c2ik17"; depends=[enviPat mgcv nontargetData]; }; + nontarget = derive2 { name="nontarget"; version="1.9"; sha256="0ndqcr73sja5ks5kdahhakpz9lw3rp26imklagdv4f5agqnb608s"; depends=[enviPat mgcv nontargetData]; }; nontargetData = derive2 { name="nontargetData"; version="1.1"; sha256="07cdbpmn64sg4jfhljdcx503d55azyz58x7nkji044z3jmdryzqw"; depends=[]; }; - nopp = derive2 { name="nopp"; version="1.0.6"; sha256="0qcj3bci3iwq88vgbhxavvrkz8n276rx4q16f2vcqszzf6zajfr5"; depends=[mlogit]; }; - nor1mix = derive2 { name="nor1mix"; version="1.2-1"; sha256="1sh7373w8z1mqkk8wvwzxab57pg1s3wcs6y6sx0sng7pf429x2m3"; depends=[]; }; + nopaco = derive2 { name="nopaco"; version="0.99.8"; sha256="07pff53nzilbl0ww6jzxw0m8z6x4ssb1xajzgi8bck2bsdd8bhid"; depends=[Matrix]; }; + nopp = derive2 { name="nopp"; version="1.0.8"; sha256="0yjnzxlmadh2g0frfwm7rrr0kqb5pjvrnjmzl6pikzr99yh8aags"; depends=[MASS mlogit]; }; + nor1mix = derive2 { name="nor1mix"; version="1.2-2"; sha256="14djjhhivl49jnsmnydcswmc6bzfvgjjg7pibg32a9p3y2f0lmnq"; depends=[]; }; nordklimdata1 = derive2 { name="nordklimdata1"; version="1.2"; sha256="0c2hbh3qy8nrs275lxpzfgqsfgwp81m4kv0layvnjj09fcybm54x"; depends=[]; }; norm = derive2 { name="norm"; version="1.0-9.5"; sha256="01j1h412yfjx5r4dd0w8rhlf55997spgb6zd6pawy19rgw0byp1h"; depends=[]; }; + norm2 = derive2 { name="norm2"; version="2.0.1"; sha256="09447dng9px1ynfp382vjmh5iqdnhc7kxg28cbmqx7ncj1z5a2bm"; depends=[]; }; normalp = derive2 { name="normalp"; version="0.7.0"; sha256="1s12x2qln3s4bbqsm4p3cq4g6461z73r858g6ym1awamhbmncnrl"; depends=[]; }; + normalr = derive2 { name="normalr"; version="0.0.3"; sha256="1ydlp6nbldq7sq60zdlvqah43xdfvx5nyiqaq2m5vgma6yny930x"; depends=[ddR magrittr MASS purrr shiny]; }; normtest = derive2 { name="normtest"; version="1.1"; sha256="073r2mwfs6c4vqh8921nlyygl0f20nhv997s0iwf00d3jckkc4pp"; depends=[]; }; normwhn_test = derive2 { name="normwhn.test"; version="1.0"; sha256="1kr45bfydk40hgdg24i2f28cdaw65hg9gmsgv4lsvvr2m3r74vi6"; depends=[]; }; nortest = derive2 { name="nortest"; version="1.0-4"; sha256="17r0wpz72z9312c70nwi1i1kp1v9fm1h6jg7q5cx1mc1h420m1d3"; depends=[]; }; + nortestARMA = derive2 { name="nortestARMA"; version="1.0"; sha256="170dqxaln51snqzqjwagd16f2x4aarqg3xsim0gbvfqlv43sksb7"; depends=[astsa]; }; nose = derive2 { name="nose"; version="1.0"; sha256="17l78vmfqc22inq6zaqpnk2m91wp0nfjbbwfcpfqykf8lk9ipqna"; depends=[]; }; + not = derive2 { name="not"; version="1.0"; sha256="1hwrka8a5jygm3zjh5jhzjx2bvdqip7pb5009vkk7k0sp8m760kq"; depends=[]; }; + notifier = derive2 { name="notifier"; version="1.0.0"; sha256="1yi99ja8xdg771fn0brz5qz5p9kcbspwjx272lvjvw26lw7gaw3f"; depends=[]; }; notifyR = derive2 { name="notifyR"; version="1.02"; sha256="0jx76ic5r1crcgg0n0yqnka0gwniflfxakh838a98j9wb11wi6h5"; depends=[RCurl rjson]; }; + notifyme = derive2 { name="notifyme"; version="0.3.0"; sha256="0b6xrv6c4id7rs0dafg96pl4brn4yma5xh9wjz78ql44bg3w5s91"; depends=[dplyr httr magrittr]; }; novelist = derive2 { name="novelist"; version="1.0"; sha256="0wzx0vkqvl9sfhbbrzylsxhm3qmjj5w8sy5w6gvd104fn84d49yk"; depends=[]; }; noweb = derive2 { name="noweb"; version="1.0-4"; sha256="17s65m1m8bj286l9m2h54a8j799xaqadwfrml11732f8vyrzb191"; depends=[]; }; np = derive2 { name="np"; version="0.60-2"; sha256="0zs1d4mmgns7s26qcplf9mlz9rkp6f9mv7abb0b9b2an23y6gmi5"; depends=[boot cubature]; }; npIntFactRep = derive2 { name="npIntFactRep"; version="1.5"; sha256="14ms66ppzb4jjsa3fparic6gdn913f6wv2ccjyb02j1ahs4iaa4g"; depends=[ez plyr]; }; - nparACT = derive2 { name="nparACT"; version="0.3"; sha256="0984s2fb989z94x8jzmmp4zh0hy8ji74hzqqiv4145s9fb4rvn64"; depends=[ggplot2 stringr zoo]; }; + npROCRegression = derive2 { name="npROCRegression"; version="1.0-4"; sha256="1w635wqkkbw5csrzjdyim6qxp5rvrlik260wp9iarh97rs5jgm53"; depends=[lattice]; }; + nparACT = derive2 { name="nparACT"; version="0.7"; sha256="0ia7s4gcqvcx02gybzizf6dsv75graknsjq7m74iplb2v6rzyywj"; depends=[ggplot2 stringr zoo]; }; nparLD = derive2 { name="nparLD"; version="2.1"; sha256="1asq00lv1rz3rkz1gqpi7f83p5vhzfib3m7ka1ywpf2wfbfng27n"; depends=[MASS]; }; nparcomp = derive2 { name="nparcomp"; version="2.6"; sha256="111ypwyc885lvn64a5sb2k552j6wr3iihmhgx5y475axdiva5pzf"; depends=[multcomp mvtnorm]; }; - npbr = derive2 { name="npbr"; version="1.2"; sha256="0l6r9cwrhbi37p8prrjcli7rpvlxgzma2m1wqck5y97wx1fnh4h3"; depends=[Benchmarking np quadprog Rglpk]; }; + nparsurv = derive2 { name="nparsurv"; version="0.1.0"; sha256="1qy9qkkpqrk49vjxbyvl25i4kfk0py6v64izd8lmaw38dynybpy2"; depends=[survival TH_data]; }; + npbr = derive2 { name="npbr"; version="1.4"; sha256="0h2lrjls89ivd3v1jksiq5jh57n20xgxaxcpwx8vqcvbpsdvfkd4"; depends=[Benchmarking np quadprog Rglpk]; }; + npcopTest = derive2 { name="npcopTest"; version="1.02"; sha256="1avjhm6rzyawwaabch6cxc7w2if4631jwrd2l8lyd3nk39kpr8ch"; depends=[]; }; npcp = derive2 { name="npcp"; version="0.1-6"; sha256="1ki9q49nyw21c6x3iwpd8aa152jc30idl0xx8f803j72yl21j47c"; depends=[]; }; npde = derive2 { name="npde"; version="2.0"; sha256="1cp4k7jvsw9rc6rrck902nqqjaf2c1nxjic7i9r3fd6yca1lgqb9"; depends=[mclust]; }; nplplot = derive2 { name="nplplot"; version="4.5"; sha256="1dpbs0jb34gv0zj528357z1j2pwahjbp04rm7jir6qk0jhyaxxgh"; depends=[]; }; - nplr = derive2 { name="nplr"; version="0.1-4"; sha256="03yq8f2bfdyi21d8kqcca0byjrw9a7pgp0c6fwpk1lnniaabzn2d"; depends=[]; }; + nplr = derive2 { name="nplr"; version="0.1-7"; sha256="1h3qv9dlw2gx8km3slyvrl588nif1n87df8xwmm6p75ziqhn2f56"; depends=[]; }; npmlreg = derive2 { name="npmlreg"; version="0.46-1"; sha256="1gddl6diw8ix8vz7n1r4ps9cjx3q00mafpapskjk7pcz69m6hfv1"; depends=[statmod]; }; - npmr = derive2 { name="npmr"; version="1.0"; sha256="1467zjd56p5b23am40gzr1vly7v8hhqiybfvgbxw1mnrvxzlvfj2"; depends=[]; }; - npmv = derive2 { name="npmv"; version="2.3.0"; sha256="0719p38fh37lz7yclqp1l03pn8j051jm8hfzvxjd7m5kg0p083rh"; depends=[Formula]; }; + npmr = derive2 { name="npmr"; version="1.1"; sha256="1ss8ypvv6qcdxv7l3szivliwmhidmzi3572p3nz96ysndf56akl4"; depends=[]; }; + npmv = derive2 { name="npmv"; version="2.4.0"; sha256="04lfks2rlax59gxdnbgkpmk2vaax718z6hkgsvmyxf52iby6rvlr"; depends=[Formula]; }; nppbib = derive2 { name="nppbib"; version="1.0-0"; sha256="075jb13zckkh66jwdmdlq4d2drjcc3lkj26px3w79b91223yymf2"; depends=[]; }; - npregfast = derive2 { name="npregfast"; version="1.2.1"; sha256="0ydxz4if5i54b45qsymzk5zl3ym0q08brvia4czx9h2r78db2v0g"; depends=[ggplot2 gridExtra shiny]; }; - nproc = derive2 { name="nproc"; version="0.1"; sha256="0ddj4iarmm2wk56rlb9ifzip8j7cwfja1p8jsn2769x0b2mz2n1n"; depends=[ada e1071 glmnet MASS randomForest]; }; - npsf = derive2 { name="npsf"; version="0.1.6"; sha256="0zaz7yxb39x8c04bx5gzrryp9jn3sylk4gyv1nlrgqig8v7020qy"; depends=[Formula]; }; + npregfast = derive2 { name="npregfast"; version="1.4.0"; sha256="1p5hp8mld05p03lrgyqwdh5wg4qh7n2bqx9w5p7z4dvvh6h67nji"; depends=[doParallel foreach ggplot2 mgcv sfsmisc shiny shinyjs wesanderson]; }; + nprobust = derive2 { name="nprobust"; version="0.0.1"; sha256="13fc84ahv2gid3b1iyyc151v10pafaxbbym3g891ivxglyw10zy1"; depends=[Rcpp RcppArmadillo]; }; + nproc = derive2 { name="nproc"; version="2.0.4"; sha256="1hbyf1n2s4wbd0206a69pf6akyxv6gx3dvifn26nizas3iaccp48"; depends=[ada e1071 glmnet MASS randomForest]; }; + npsf = derive2 { name="npsf"; version="0.2.0"; sha256="0cww1fi0amgc9n1hbfy3z7xgwrbcdwvsr2d6l8lpsr1bdcpgbjzv"; depends=[Formula]; }; npsm = derive2 { name="npsm"; version="0.5"; sha256="12jq6ygp3di5rknh7izrr3bxvpn6bqnj3jhfxzf29yf0bd86hzqk"; depends=[plyr Rfit]; }; - npsp = derive2 { name="npsp"; version="0.3-6"; sha256="1wiv4gp3y1c26xaq8zssias3j3h8mpb6izcmcarghvnfhj32l8jb"; depends=[quadprog]; }; + npsp = derive2 { name="npsp"; version="0.5-3"; sha256="0ck6iymfc73bzrifdc2sagcliz1yakqk1yv67a3ykha996jsrx99"; depends=[quadprog]; }; npst = derive2 { name="npst"; version="2.0"; sha256="1y5ij3nmh9pj6p97jpx75g26sk508mznr0l67cwj381zfb77hj1n"; depends=[]; }; npsurv = derive2 { name="npsurv"; version="0.3-4"; sha256="1z456q3vi9pndr2x8byq95hh4dv95hpgj1an6vxhnwlhbfwjdjlx"; depends=[lsei]; }; + nricens = derive2 { name="nricens"; version="1.3"; sha256="0wyr6bh8vhvvixqa8z2pmav94frskv5kvsf2y4yk2064ra65kjiz"; depends=[survival]; }; nsRFA = derive2 { name="nsRFA"; version="0.7-12"; sha256="182zshwyg0l6shb5wcwibqygxs8qmgma9c4s683za8q3f9l94aqj"; depends=[]; }; nscancor = derive2 { name="nscancor"; version="0.6"; sha256="1wkk08h8yz2mzgvmq0vr30iiczpbp0304vjwxqgsa3h240m4awsm"; depends=[]; }; + nse = derive2 { name="nse"; version="1-00.17"; sha256="16zam539ir29m9ixyim9bqnf3sdy8aaaaly3wf96i3csgysf8pjc"; depends=[coda mcmc mcmcse np Rcpp sandwich sapa]; }; nsga2R = derive2 { name="nsga2R"; version="1.0"; sha256="04jj0a3isfc348vg46il5x9l33cr7xawz5w0mm4pwr6djhd8nfhx"; depends=[mco]; }; nsgp = derive2 { name="nsgp"; version="1.0.5"; sha256="0piajjz3r71dnjw7lwpjhbaygxcrbbxfvhf8p3n2izyr2pw5fml9"; depends=[MASS]; }; nsprcomp = derive2 { name="nsprcomp"; version="0.5"; sha256="1rrjiwkpiaqlp27s5xfd6jwmmpzgxm5d7874gp33511wa0vrhnnf"; depends=[]; }; + nucim = derive2 { name="nucim"; version="1.0.0"; sha256="0fyapw6f5wkybr4mwmqpk9wy349j5sa4q26pci1bsy4ly2wf9wx6"; depends=[bioimagetools EBImage fields stringr]; }; nullabor = derive2 { name="nullabor"; version="0.3.1"; sha256="0anwla6x9y2i7yd6r0yi1xhy0zfqwfpp5h1f18gji11nmiva9d81"; depends=[dplyr fpc ggplot2 MASS moments plyr]; }; - numDeriv = derive2 { name="numDeriv"; version="2014.2-1"; sha256="114wd0hwn2mwlyh84hh3yd2bvcy63f166ihbpnp6xn6fqp019skd"; depends=[]; }; - numOSL = derive2 { name="numOSL"; version="1.9"; sha256="1vz7hvd79v4iydhq3jmpigsymd2disdkkw28svzb68zdiccbxfnd"; depends=[]; }; - numbers = derive2 { name="numbers"; version="0.6-1"; sha256="1mqcps33az5a7vd2czx7nll87yciwmxngnilf16iz4yf9p59gny5"; depends=[]; }; + numDeriv = derive2 { name="numDeriv"; version="2016.8-1"; sha256="07ni52rwiap4wilfz94w5mrqaxr59axxmgn57857ip4p6qkiss0v"; depends=[]; }; + numOSL = derive2 { name="numOSL"; version="2.1"; sha256="1my1pb23qafh96kk5vyjgks06g8pk9pkhk9rnqx76y5fdb5m8yy1"; depends=[]; }; + numbers = derive2 { name="numbers"; version="0.6-6"; sha256="05qmv12b90vkzf2b50qjnp8hja6rms91jj97knx70n2yhpb2lnd9"; depends=[]; }; nutshell = derive2 { name="nutshell"; version="2.0"; sha256="1v11g5wqyxnj29b7akl0cwa34hcqs79ijbiv735pg3df4ggyrzvm"; depends=[nutshell_audioscrobbler nutshell_bbdb]; }; nutshell_audioscrobbler = derive2 { name="nutshell.audioscrobbler"; version="1.0"; sha256="10fvc5d22gnfb0bkgbww48f0vvcaja96g5gfv85kap939j11172j"; depends=[]; }; nutshell_bbdb = derive2 { name="nutshell.bbdb"; version="1.0"; sha256="19c4047rjahyh6wa6kcf82pj09smskskvhka9lnpchj13br8rizw"; depends=[]; }; nws = derive2 { name="nws"; version="1.7.0.1"; sha256="1fn92n6brjhh8hpvhax7211cphx2cn0rl99kjqksig6z7242c316"; depends=[]; }; - nycflights13 = derive2 { name="nycflights13"; version="0.1"; sha256="15bqaphxwqpdzr4bkn6qgbjb3knja5hk34qxjd6xhpjzkgfs5c0b"; depends=[]; }; + nycflights13 = derive2 { name="nycflights13"; version="0.2.2"; sha256="1857pwyhb5gvbdxv934nlc50n4ai7njm89js7b7ywfg7mhgha4yc"; depends=[tibble]; }; + nzelect = derive2 { name="nzelect"; version="0.2.0"; sha256="1ijyvqm8yz3wib8wyibcxqx6p848xgxjrl84ppwq0nx0ic0vizbm"; depends=[]; }; + nzpullover = derive2 { name="nzpullover"; version="0.0.2"; sha256="0c50854dhvjmhh8c34w9w0r8v8wk5j8bi6j81m5wpcd2jxrkbw4f"; depends=[]; }; + oXim = derive2 { name="oXim"; version="1.1.2"; sha256="1270m0mng8sz8bsa8gi0pkp2znglv2sqzhq3s09mj73c0l96pzm7"; depends=[gstat imagine R_matlab sp]; }; oaColors = derive2 { name="oaColors"; version="0.0.4"; sha256="040sdqrk9dciylnnrrshlj06s9qhvngii9shx1p8412ip7mk8r1m"; depends=[MASS RColorBrewer]; }; oaPlots = derive2 { name="oaPlots"; version="0.0.25"; sha256="0c5ig1ar02vg38pjjmp3gd53ij1j7pzajs0zrlfajz141qkv2ysr"; depends=[ggplot2 oaColors]; }; - oai = derive2 { name="oai"; version="0.2.0"; sha256="14vimvaba5fxcfl2n8dqa78jw51ra3nvqmw8js5x0d81yp47yaga"; depends=[httr plyr stringr xml2]; }; + oai = derive2 { name="oai"; version="0.2.2"; sha256="0q1w29wrppi5sfabdw8px7zr92bgri3jhy0y7dhi46xggxfg9vm1"; depends=[httr plyr stringr tibble xml2]; }; oapackage = derive2 { name="oapackage"; version="2.0.23"; sha256="1kkwxwgb23i4m8dlh1ybskardwf8ql0m18cv9c5zi1qd2vkk5dx0"; depends=[RcppEigen]; }; - oasis = derive2 { name="oasis"; version="0.99.5"; sha256="03jcy766bj3z9km2jlf2wpjkfvkryffkjlvchpyh5hgfkm4vs2cv"; depends=[fslr oro_nifti]; }; + oasis = derive2 { name="oasis"; version="2.1"; sha256="0yh54vip2bx1ifpc3d7acr9488i3w9iyh3gl209fivnrn555plqf"; depends=[fslr mmand neurobase oro_nifti]; }; oaxaca = derive2 { name="oaxaca"; version="0.1.3"; sha256="0pi3lrvx5cjl35hww9w8bwh0720zibph636c2ay38k83lzf3kcb8"; depends=[Formula ggplot2 reshape2]; }; - obAnalytics = derive2 { name="obAnalytics"; version="0.1.0"; sha256="0k8zb81wf51kcrnlw9616vfbm150x17ggxhd23fm71a1n3292xvc"; depends=[ggplot2 reshape2 zoo]; }; + obAnalytics = derive2 { name="obAnalytics"; version="0.1.1"; sha256="1l4ld120qk0adycmvqrkzada10kb7z03lj2njzqagmacl1z8598f"; depends=[ggplot2 reshape2 zoo]; }; objectProperties = derive2 { name="objectProperties"; version="0.6.5"; sha256="0wn19byb1ia5gsfmdi6cj05pnlxbr3zcrjabjg3g1d7b58nz7wlh"; depends=[objectSignals]; }; objectSignals = derive2 { name="objectSignals"; version="0.10.2"; sha256="1rcgfq1i3nz2q93vv4l069f3mli1c6fd5dhhhw1p7cc4sy81008w"; depends=[]; }; obliclus = derive2 { name="obliclus"; version="0.9"; sha256="000r1dx4zbgjxrfs66c1yazm0w6q2z0z1scf45g2qj5ykcm9ylma"; depends=[]; }; @@ -5883,122 +7337,159 @@ in with self; { obliqueRF = derive2 { name="obliqueRF"; version="0.3"; sha256="1bwlgv820mmpc6vg26bsdlfy2p78586i3y42hkzbw3z1fmwq3pz5"; depends=[e1071 mda pls ROCR]; }; obs_agree = derive2 { name="obs.agree"; version="1.0"; sha256="191xshnrncjqzwd2rdq334vsx0338q3y3k1nbm04hdaysbnla9jv"; depends=[]; }; obsSens = derive2 { name="obsSens"; version="1.3"; sha256="1vfm1mzsycwkqa39vf3fcdv1s6adps9hw1rxlvl8v9kq746hcabw"; depends=[]; }; - oc = derive2 { name="oc"; version="0.95"; sha256="1zmy34fsqcd4rq0v72r514k6gm3jmf9a5zv4m6kj09hl89xvqsci"; depends=[pscl]; }; + observer = derive2 { name="observer"; version="0.1.2"; sha256="1027827k57qb4xppx0xxxffd1s3n7pz754irdx3v1v3piix8xi8m"; depends=[bazar bit dplyr lazyeval magrittr tibble]; }; + oc = derive2 { name="oc"; version="0.96"; sha256="110pf3rqcab0671djx25jwwl8rbaskcd2lrcv56d786j693y2ash"; depends=[pscl]; }; occ = derive2 { name="occ"; version="1.0"; sha256="1rpgq6mqrdzz52ln897f5k8yyz5i14s3lxqmy3nwsxf3q2bdf3yh"; depends=[]; }; - oce = derive2 { name="oce"; version="0.9-18"; sha256="1vqfw1y6dj094cn9jy0pq39r1v2przqdrl1add6amssgxyh3bak1"; depends=[gsw]; }; + oce = derive2 { name="oce"; version="0.9-20"; sha256="1pckxrkkgb22rrm1q9j2xijnbhk6j260rq8pvmi02l8mdx6l99l5"; depends=[gsw]; }; ocean = derive2 { name="ocean"; version="0.2-4"; sha256="1554iixfbw3k6w9xh3hgbiygszqvj5ci431cfmnx48jm27h2alqg"; depends=[ncdf4 proj4]; }; + oceanmap = derive2 { name="oceanmap"; version="0.0.2"; sha256="0pbwja7m0ng2j2147sgc07v3q80xmj3bwidvqksigklka4zx822q"; depends=[abind extrafont fields mapdata maps maptools marmap ncdf4 plotrix raster sp]; }; ocedata = derive2 { name="ocedata"; version="0.1.3"; sha256="0lzsyaz8zb6kiw86fnaav2g2wfdhyicxvm81ly5a9z4mjch3qj02"; depends=[]; }; + ockc = derive2 { name="ockc"; version="1.0"; sha256="0chzrs3ipa2518r4d35z4fxffgq12p1mwj0hzkxw19gdgq6aa8s7"; depends=[flexclust modeltools]; }; ocomposition = derive2 { name="ocomposition"; version="1.1"; sha256="0fk8ia95yjlvyvmjw7qg72piqa40kcqq9wlb3flc6a81pys1ycb5"; depends=[bayesm coda]; }; - odds_converter = derive2 { name="odds.converter"; version="1.3"; sha256="0pa0figal4p42iy83lfj9fmnlakac7blfbmcic67qd19bdn88jz2"; depends=[]; }; - odeintr = derive2 { name="odeintr"; version="1.3"; sha256="12y5hr6f7bj3aqj4gd0hlj495c5163jn0liksspk5jpqcmpsgdg3"; depends=[BH Rcpp]; }; + odbc = derive2 { name="odbc"; version="1.0.1"; sha256="0i047xpp481r5lsmrk853fcwhhvanwl6xdbddjgypd0mf0c11ng0"; depends=[BH blob DBI Rcpp]; }; + odds_converter = derive2 { name="odds.converter"; version="1.4"; sha256="13y3s04l2jvjhn1i4syz4y3q42ba8br0sp3mks5f5h4cp8w4j3wy"; depends=[]; }; + oddsratio = derive2 { name="oddsratio"; version="0.3.1"; sha256="0vpqhb6zady7facbrv5g3idxnzwy65237w6wfdxafsx40vc7bcig"; depends=[cowplot ggplot2 MASS mgcv]; }; + odeintr = derive2 { name="odeintr"; version="1.7.0"; sha256="0qjgiik1vg4cp0fh07zabbmlxq12074nqczqxgf49sgvjgmasxx0"; depends=[BH Rcpp]; }; odfWeave = derive2 { name="odfWeave"; version="0.8.4"; sha256="1rp9j3snkkp0fqmkr6h6pxqd4cxkdfajgh4vlhpz56gr2l9j48q5"; depends=[lattice XML]; }; odfWeave_survey = derive2 { name="odfWeave.survey"; version="1.0"; sha256="0cz7dxh1x4aflvfrdzhi5j64ma5s19ma8fk9q2m086j11a1dw3jn"; depends=[odfWeave survey]; }; - oem = derive2 { name="oem"; version="1.02.1"; sha256="0z9k0jhpp5dayyin6v8p26rgl8s983hnpsk195c9z458i7nbmrpd"; depends=[Rcpp RcppArmadillo]; }; - oglmx = derive2 { name="oglmx"; version="1.0.3"; sha256="01r0j7d2l4pf61x2q4pa6pnkv2yzsk2jb62cvh0jz2rhkpvqjniq"; depends=[maxLik]; }; + oec = derive2 { name="oec"; version="2.2"; sha256="11ldy303xkl7qaqvlzfwr7qxwnz06n39mkjvrj0sca6xzw12lq5d"; depends=[curl data_table jsonlite plyr servr]; }; + oem = derive2 { name="oem"; version="2.0.4"; sha256="1n9b8zw4d3ydirrrl4n14as5x8jc10bzfza4zs4gn6ljk5p3lsci"; depends=[BH bigmemory foreach Matrix Rcpp RcppArmadillo RcppEigen]; }; + oglmx = derive2 { name="oglmx"; version="2.0.0.1"; sha256="03lsgdz2pjykzcv7k9r940rgh7qh7vn651nrshx1r0b63mh9cqsj"; depends=[maxLik]; }; + oii = derive2 { name="oii"; version="1.0.1"; sha256="0w1afajkr5vly9qi1r2iz1ikbvyvy6hcbc10g8s7g6zi8db5dgf4"; depends=[Deducer gmodels rapportools]; }; + okcupiddata = derive2 { name="okcupiddata"; version="0.1.0"; sha256="1l04rr4yr73a6q2am9ylyr5prf347hkf2jx735w78rsb6472kbaq"; depends=[]; }; okmesonet = derive2 { name="okmesonet"; version="0.1.5"; sha256="1kzyzmg702ayzphn9jsk64m51mlnz37ylxiwq5gsr23vaiida680"; depends=[plyr]; }; - olctools = derive2 { name="olctools"; version="0.2.1"; sha256="0hnsv5b283lscj3b3pygjzyghc0glpavpijl7drv59ka9914ixl6"; depends=[Rcpp]; }; + olctools = derive2 { name="olctools"; version="0.3.0"; sha256="1gbchwynvmryarz32f24v56kj57h7x6nrrm878fkjkpq140cqwzz"; depends=[Rcpp]; }; omd = derive2 { name="omd"; version="1.0"; sha256="0s1wcgivqapbkzjammga8m12gqgw113729kzfzgn02nsfzmsxspv"; depends=[]; }; - omics = derive2 { name="omics"; version="0.1-4"; sha256="1klzh431lcw2r8ylvqzl7xcyvr7bqapk3v15slfn9n27bbaljicp"; depends=[lme4 pheatmap]; }; + omics = derive2 { name="omics"; version="0.1-5"; sha256="1y2x33mfgq98nglhvpr1wq1v6nfiq4njy2yac47x72rpwxsj9vb1"; depends=[lme4 pheatmap]; }; oncomodel = derive2 { name="oncomodel"; version="1.0"; sha256="1jyyq9znffiv7rg26mjldbwc5yi2f4f8npsd2ykhxyacb3g96fp1"; depends=[ade4]; }; onemap = derive2 { name="onemap"; version="2.0-4"; sha256="00xmhm5qy0ycw0mnlyl20vfw0wxmpb36f07k0jj92c4zbpwjiygx"; depends=[tkrplot]; }; - onewaytests = derive2 { name="onewaytests"; version="1.1"; sha256="13d2jcj8sb3gvv0k73bcaplsf2i2hf8fswcnvykpnps9lb6kvn0v"; depends=[]; }; + onewaytests = derive2 { name="onewaytests"; version="1.2"; sha256="1fscyffmvlasx56hxlk2b60fk0scfjbb3yk5q74ffszk4xvqbrzg"; depends=[]; }; onion = derive2 { name="onion"; version="1.2-4"; sha256="0x3n9mwknxjwhpdg8an0ilix5cb8dyy5fqnb6nxx7ww885k0381a"; depends=[]; }; - onlinePCA = derive2 { name="onlinePCA"; version="1.3"; sha256="11dp1fxb26rzv2743wgwyrc35bslm57yi3a57r7wjixkp9vf9kkb"; depends=[rARPACK Rcpp RcppArmadillo]; }; + onlineCPD = derive2 { name="onlineCPD"; version="1.0"; sha256="1hdj9wizf0b2vs481fnx80m4b7rqp0bl14xbxfcawlk9d82q2mh2"; depends=[ggplot2 gridExtra reshape2 scales]; }; + onlinePCA = derive2 { name="onlinePCA"; version="1.3.1"; sha256="08qivsfnwz5vp089lv9czsaz3nfi42kn9yhgzf27dji18y2xscic"; depends=[Rcpp RcppArmadillo RSpectra]; }; onls = derive2 { name="onls"; version="0.1-1"; sha256="0m7pnlzkqwzi6jncjzxzfvznipd4wg03zd9fc0ymwm9jvhm4p14g"; depends=[minpack_lm]; }; - ontologyIndex = derive2 { name="ontologyIndex"; version="1.0"; sha256="1x7x5smfxprlpsd5jjzh7rqcpiih2plmlnjjl9ww6vbkcdlk783d"; depends=[]; }; - ontologyPlot = derive2 { name="ontologyPlot"; version="1.0"; sha256="0z8bppcpc8d9rzk3h3c5c9pa1hnhdymx77d00lji2nldrlnsil89"; depends=[functional magrittr ontologyIndex Rgraphviz]; }; - ontologySimilarity = derive2 { name="ontologySimilarity"; version="1.0"; sha256="0wqdsss43xfsm90jr7j07yrmpcj3xm0ax8jaad6cqlq60ywm2a8n"; depends=[ontologyIndex Rcpp]; }; + ontologyIndex = derive2 { name="ontologyIndex"; version="2.4"; sha256="168m4jdwbzv8lpimx9063306691hnfdjmdhb5y8195d9vcq049jr"; depends=[]; }; + ontologyPlot = derive2 { name="ontologyPlot"; version="1.4"; sha256="0sj1jg9lr1w3ahzw7fj86vp2bnvf4nq0x3hiqb3hzngwyj9bykpn"; depends=[ontologyIndex paintmap Rgraphviz]; }; + ontologySimilarity = derive2 { name="ontologySimilarity"; version="2.2"; sha256="1g1ag2bnfczdx2xyswrc9xbl9krnyibb4639wynm7c0lf2876964"; depends=[ontologyIndex Rcpp]; }; opefimor = derive2 { name="opefimor"; version="1.2"; sha256="06j5diwp42x7yrhclwyiimfwmx66y23dkwlnkd2lj2zcsgam9s8w"; depends=[]; }; openNLP = derive2 { name="openNLP"; version="0.2-6"; sha256="1173cng877sg6ynbs3csfnn956wwrq3yldhhzfbqdsz35draganj"; depends=[NLP openNLPdata rJava]; }; openNLPdata = derive2 { name="openNLPdata"; version="1.5.3-2"; sha256="1472gg651cdd5d9xjxrzl3k7np77liqnh6ysv1kjrf4sfx13pp9q"; depends=[rJava]; }; - openVA = derive2 { name="openVA"; version="1.0"; sha256="1bqfysxx5qjdz0p7kmvjjbivnh384zq7z1nxidn33kr1wnsnvmcq"; depends=[ggplot2 InSilicoVA InterVA4 Tariff]; }; - openair = derive2 { name="openair"; version="1.7-3"; sha256="1g63jjsdi4658qkjwzdhdd11s45fm0y5xp975i0sd9vkxgiffxg4"; depends=[cluster dplyr hexbin lattice latticeExtra lazyeval lubridate mapdata mapproj maps mgcv plyr RColorBrewer Rcpp reshape2 RgoogleMaps]; }; - opencpu = derive2 { name="opencpu"; version="1.5.4"; sha256="1sn8hvq0bwlrb3bd7ril1mynhfjbfkgrgx5f515767gav9hv1v4m"; depends=[brew devtools evaluate httpuv httr jsonlite knitr openssl]; }; + openVA = derive2 { name="openVA"; version="1.0.3"; sha256="09wbhl0g6q1rhi6yr3wpbns4ik7jalpagacn6am09i6zvmz8745j"; depends=[ggplot2 InSilicoVA InterVA4 nbc4va Tariff]; }; + openadds = derive2 { name="openadds"; version="0.2.0"; sha256="1jb8zd3rpxfkjkg895iab6m4cfi53p5vy3nnpjkgq7ym6499qjcv"; depends=[crul dplyr jsonlite maptools rappdirs readr tibble xml2]; }; + openair = derive2 { name="openair"; version="2.0-0"; sha256="1cwlk0vi510065p1rb70h5rsprd55xfyb7ym8mv93iwvqgwxhx5j"; depends=[cluster dplyr hexbin lattice latticeExtra lazyeval lubridate mapproj maps MASS mgcv plyr RColorBrewer Rcpp reshape2]; }; + opencage = derive2 { name="opencage"; version="0.1.0"; sha256="0fx5l5rzl9c7df03bvxcykfcrqjl2ld5k49kzsc5d157gxynnh56"; depends=[dplyr httr jsonlite memoise]; }; + opencpu = derive2 { name="opencpu"; version="1.6.1"; sha256="01m9zrbyishf4qbsw6fnfihnw4470qvv6br63zbzj2c7jzpi0v6g"; depends=[brew devtools evaluate httpuv httr jsonlite knitr openssl protolite]; }; openintro = derive2 { name="openintro"; version="1.4"; sha256="1k6pzlsrqikbri795vic9h191nf2j7v7hjybjfkrx6847c1r4iam"; depends=[]; }; - openssl = derive2 { name="openssl"; version="0.9.2"; sha256="1dbsaciz39zvsmcyxkmpfm5yxzrpw2iv2nb86525wn80q0cyv0cb"; depends=[]; }; + openssl = derive2 { name="openssl"; version="0.9.6"; sha256="0ffwllii8xl6sa2v66134g0fwaw1y3zn3mvaa4nrc120vv5d3mkd"; depends=[]; }; opentraj = derive2 { name="opentraj"; version="1.0"; sha256="13nqal96199l8vkgmkvl542ksnappkscb6rbdmdapxyi977qrgxk"; depends=[doParallel foreach maptools openair plyr raster reshape rgdal sp]; }; - openxlsx = derive2 { name="openxlsx"; version="3.0.0"; sha256="1vx5qmhlyrlwrswbhd95jjcsldcdpdp7gs341dmham26sdzdx658"; depends=[Rcpp]; }; + openxlsx = derive2 { name="openxlsx"; version="4.0.0"; sha256="1jz75kxpbbdw3bf9a49fih4wlk36nki3nr8yq7v9n31qzyb5k3qy"; depends=[Rcpp]; }; + opera = derive2 { name="opera"; version="1.0"; sha256="0p2wg3srg088l420ykrq0wqvzh1mp6l753rdw35f7kdmaj08mqfq"; depends=[quadprog quantreg RColorBrewer]; }; operator_tools = derive2 { name="operator.tools"; version="1.4.4"; sha256="1ridxi3pbylb4flfgn371n1v9796rnd1ndxhh6ijyzpysqqmwi08"; depends=[]; }; operators = derive2 { name="operators"; version="0.1-8"; sha256="0zgcv2q46qyqv4dhbd33s4044zjw38w8dqfpzs0c1lxjpkil3dnx"; depends=[]; }; ops = derive2 { name="ops"; version="1.0"; sha256="0cvwyn5sz5lx8sin8w4k8ymslfl4nfaa012a9vcl2hvp4850rk25"; depends=[]; }; optAUC = derive2 { name="optAUC"; version="1.0"; sha256="0j1llzqa3n7kqw3i5bb7284z0hi6s5jbjfl9zap0l7xf6hg4x1dn"; depends=[MASS]; }; optBiomarker = derive2 { name="optBiomarker"; version="1.0-27"; sha256="1kkj602d4klwyd8kylawgfysg8dlp2g6j7afkppzv5x8mbhs5ji4"; depends=[e1071 ipred MASS Matrix msm randomForest rgl rpanel]; }; - optCluster = derive2 { name="optCluster"; version="1.0.1"; sha256="13vph76wmhr7rg036fvn7i9nfanhxg3y5rnycrniybz3ny1q5paf"; depends=[cluster clValid gplots kohonen MBCluster_Seq mclust RankAggreg]; }; - optR = derive2 { name="optR"; version="1.1.1"; sha256="1lr5n0g21jayb27b2j8zh16f1k28avzg7k2mwyc7rjhhxv8k9w1j"; depends=[]; }; - optextras = derive2 { name="optextras"; version="2013-10.28"; sha256="1sm025xwrpm5c63l4kiqfndxb7rwq2bcmidy4k2b24g5a8x7cpfv"; depends=[numDeriv]; }; + optCluster = derive2 { name="optCluster"; version="1.1.0"; sha256="1p4mwnarai1kakyb0w8z46c3lwnwcndvfxspywh72mj35wfrdbc8"; depends=[cluster clValid gplots kohonen MBCluster_Seq mclust RankAggreg]; }; + optDesignSlopeInt = derive2 { name="optDesignSlopeInt"; version="1.1"; sha256="0vpm4359rq5v231k63vgaac6iv2ybfkcpy59n86djb710b3h2qcn"; depends=[MCMCpack neldermead]; }; + optR = derive2 { name="optR"; version="1.2.5"; sha256="0q7jf4m0gzm11izl5lff17pvr855smqmc6zzi1bc7m6h3z865l32"; depends=[]; }; + optband = derive2 { name="optband"; version="0.2"; sha256="0a0kr8h4asziq66k1556mabwjyib84v0arn4jmb0gjzxjrg6rk2f"; depends=[LambertW]; }; + optbdmaeAT = derive2 { name="optbdmaeAT"; version="1.0.1"; sha256="1y1mvcyjihpj1wgjmifhmd10717wr1srp7h87azs4gfypgsiqchn"; depends=[igraph MASS Matrix]; }; + optextras = derive2 { name="optextras"; version="2016-8.8"; sha256="03wqz16q8kn0ndk241h541fa0g5y0nrfg17vph85cm5xvzdd14cc"; depends=[numDeriv]; }; optiRum = derive2 { name="optiRum"; version="0.37.3"; sha256="1g3kgfwa7ckh45v14qdi3gq9vy0zfpjaffcgpfapyylrsrnspy3f"; depends=[AUC data_table ggplot2 knitr plyr scales stringr XML]; }; + optiSel = derive2 { name="optiSel"; version="0.1"; sha256="0jr1gi31la8lnz1s7xyk4bc650kf374v2bha638fzg2cx2zqkiif"; depends=[alabama cccp GENLIB kinship2 MASS Matrix nadiv nloptr pedigree pspline Rcsdp stringr]; }; + opticut = derive2 { name="opticut"; version="0.1-0"; sha256="0dh7zw8yrzxw3vfzfm776rdhfczmlwfs3fw568s5cc60xsn8fa93"; depends=[betareg MASS mefa4 pbapply pscl ResourceSelection]; }; optifunset = derive2 { name="optifunset"; version="1.0"; sha256="18pvdl04ln1i0w30ljdb3k86j27zg2nvrn3ws54c1g6zg9haqhbg"; depends=[]; }; optigrab = derive2 { name="optigrab"; version="0.7.3"; sha256="1vd4b6mh4a137nvsbpx71jibfd67va1m8iya1gasqiflm6qzszcx"; depends=[magrittr stringi]; }; optimbase = derive2 { name="optimbase"; version="1.0-9"; sha256="0ivz24kf3yacgq5bl3s3az1pcyhsz0cza5f8vdksy5gchwqplm8n"; depends=[Matrix]; }; + optimization = derive2 { name="optimization"; version="1.0-1"; sha256="1smmpv9ahv2fdfqxlpp42wzg08xhhj9niay8wsd49799xvpcw1jg"; depends=[colorspace Rcpp]; }; + optimr = derive2 { name="optimr"; version="2016-8.16"; sha256="02dgwkcjhf6ciwb6x6gyk7nn4v2jras7l1icfd4pjbypiapwnck9"; depends=[numDeriv optextras Rcgmin Rvmmin setRNG]; }; optimsimplex = derive2 { name="optimsimplex"; version="1.0-5"; sha256="1aiq0w2zlra3k6x4hf2rglb6bj8w25yc8djnpgm508kkrbv3cc17"; depends=[optimbase]; }; optimx = derive2 { name="optimx"; version="2013.8.7"; sha256="0pbd7s02isj24npi4m1m1f008xqwzvwp3kn472wz8nmy4zrid30s"; depends=[BB dfoptim minqa numDeriv Rcgmin Rvmmin setRNG svUnit ucminf]; }; optiscale = derive2 { name="optiscale"; version="1.1"; sha256="1c263w9df66m7lgvzpdfm2zwx9nj8wcdpgh5gijachr2dzffmrp2"; depends=[lattice]; }; optismixture = derive2 { name="optismixture"; version="0.1"; sha256="0nacfbqlnzajp1hfhf0yzm2d86fxpp4kw2zy33q8k2d4sr56bird"; depends=[Matrix mvtnorm]; }; - optmatch = derive2 { name="optmatch"; version="0.9-5"; sha256="1dgsxd6w2fgy07yzihbrg30ya0lmy146m70cfaaxr6pnr8d0rszr"; depends=[digest Rcpp RItools survival]; }; + optmatch = derive2 { name="optmatch"; version="0.9-7"; sha256="1ps3qd7kidi0n1m9nxspz03sdw7p3lcg31q3p7c13l3vb226i5yj"; depends=[digest Rcpp RItools survival]; }; optparse = derive2 { name="optparse"; version="1.3.2"; sha256="1g8as89r91xxi5j5azsd6vrfrhg84mnfx2683j7pacdp8s33radw"; depends=[getopt]; }; - optpart = derive2 { name="optpart"; version="2.2-0"; sha256="1v90lfma06q10h6g43fh7pq1dpgdgcqsgwd73zf4z1ksq3pcx6wh"; depends=[cluster labdsv MASS plotrix]; }; + optpart = derive2 { name="optpart"; version="2.3-0"; sha256="125b9sfdk4bdcj1vq5rxlrskv1zra31x8d96pdxnqvcnkmwxm4zh"; depends=[cluster labdsv MASS plotrix]; }; optrees = derive2 { name="optrees"; version="1.0"; sha256="1zqpjii8dsfs98n58qpif81ckvyxkr0661svhlbgzi19xb2vszqs"; depends=[igraph]; }; + opusminer = derive2 { name="opusminer"; version="0.1-0"; sha256="1m4gsjylz58pbmhgcy4l9hqdsgy8ra1zg0d3rb6h2qiwfyfm0yh4"; depends=[arules Matrix Rcpp]; }; orQA = derive2 { name="orQA"; version="0.2.1"; sha256="0vivjrpcbql42y078gi91kfpfdpv73j23jkiv8fpazzwzdi8ydqq"; depends=[genefilter gtools nlme Rcpp]; }; ora = derive2 { name="ora"; version="2.0-1"; sha256="0albxqma220rnrpfdq3z9cawr83q1a0zzczbbcy4nijjm4mswphy"; depends=[DBI ROracle]; }; - orca = derive2 { name="orca"; version="1.1"; sha256="138qqjklwd3g4dfg9j2438kzpsdc7sf8qdl8ha4kd276n71vkfrh"; depends=[]; }; + orca = derive2 { name="orca"; version="1.1-1"; sha256="1wd5nh2vh6j1rp78hbw17qipi67f0wimrbkiarak8f7k5pfiy1zn"; depends=[]; }; orclus = derive2 { name="orclus"; version="0.2-5"; sha256="0kkxhyqjxib862npinzf3mipqg5imgscdmb5wqm8wf2j2mbislsx"; depends=[]; }; - orcutt = derive2 { name="orcutt"; version="1.1"; sha256="0hz7aw4jpf4l7ihj4bjnjv1m8ynr71n4l12x046qj8y7mrnl9p4k"; depends=[]; }; + orcutt = derive2 { name="orcutt"; version="2.0"; sha256="07190v3llnpkvrgsd33bbdywlvmqqgysn0p4y8krb3wgxx2dv6kg"; depends=[lmtest]; }; ordBTL = derive2 { name="ordBTL"; version="0.8"; sha256="09x3zfmss4fsh3rjghgmpv8y34dnkz4mw696b3k3nvlgk55a1423"; depends=[caret gtools VGAM wikibooks]; }; + ordDisp = derive2 { name="ordDisp"; version="1.0.1"; sha256="1vjki73h8933z36ikwmjn84ldz154mahp2jkd9cbj5n6xsi47fnw"; depends=[VGAM]; }; ordPens = derive2 { name="ordPens"; version="0.3-1"; sha256="0yzf3qzi4p7xqimihjvr0wkdvj3sy9n3wc86bf4bjbavniq6m69r"; depends=[grplasso mgcv RLRsim]; }; + ordcrm = derive2 { name="ordcrm"; version="1.0.0"; sha256="1hy24s23l099b21w5j3p2f0748s8xmhxhslfp65fg7ycwda5qsyw"; depends=[rms]; }; orddom = derive2 { name="orddom"; version="3.1"; sha256="165axs15fvwhrp89xd87l81q3h2qjll1vrwcsap645cwvb85nwsh"; depends=[psych]; }; orderbook = derive2 { name="orderbook"; version="1.03"; sha256="0dlvjrzdhhh8js4g1lvxs46q7fdxfxavxnb4nj6xlwca75i51675"; depends=[hash lattice]; }; orderedLasso = derive2 { name="orderedLasso"; version="1.7"; sha256="0vrh89nrmpi8xscvambcb1y70gqqi5819a2gxh02h4pnyjn8axql"; depends=[ggplot2 Iso Matrix quadprog reshape2]; }; ordiBreadth = derive2 { name="ordiBreadth"; version="1.0"; sha256="04faqhas1p9lxhghd4xq07yq1nxv7ns18avhvkql7sy5a9g7bfs1"; depends=[vegan]; }; ordinal = derive2 { name="ordinal"; version="2015.6-28"; sha256="0lckjzjq2k8rlibrjf5s0ccf17vcvns5pgzvjjnl3wibr2ff4czs"; depends=[MASS Matrix ucminf]; }; - ordinalCont = derive2 { name="ordinalCont"; version="0.4"; sha256="1inms74l4zx6r526xd0v79v18bcqa76xwsgfvap0fizyv2dvgpim"; depends=[boot fastGHQuad ucminf]; }; - ordinalNet = derive2 { name="ordinalNet"; version="1.4"; sha256="06sbb7x46f9cp1dhvf0x3kzpy05766yi15kw7cpzpmfz1pvk9ixs"; depends=[]; }; - ordinalgmifs = derive2 { name="ordinalgmifs"; version="1.0.2"; sha256="1rbn2mb516hdr0chny1849m1aq0vb0vmr636b4fp914l5zh75vgi"; depends=[]; }; - ore = derive2 { name="ore"; version="1.3.0"; sha256="08fdqppf2nm5h367zr2v9323p1v5qm8vby5y1ygjrwqgankpjcjg"; depends=[]; }; - ores = derive2 { name="ores"; version="0.1.0"; sha256="1k5qcdd92vnx2vclpgk64kkfi389bl1nvwafffgdy7jbgyp65rh4"; depends=[httr]; }; + ordinalCont = derive2 { name="ordinalCont"; version="1.0.2"; sha256="0dj98ziwaka1a2bra6zzqqwmw9f0ki5iyzibslix0brk9v8lq3km"; depends=[boot]; }; + ordinalNet = derive2 { name="ordinalNet"; version="1.5"; sha256="1iy8vgx6znnazhzx7m649hbikliwv9j5c5nrr0jrbdl28d84qapl"; depends=[]; }; + ordinalgmifs = derive2 { name="ordinalgmifs"; version="1.0.3"; sha256="0ki91l6vvfxpzq7zgl3d08r5pzx47jxkgf7g0g95580xx2q7n7zx"; depends=[survival]; }; + ore = derive2 { name="ore"; version="1.5.0"; sha256="0bvpi4gz71qgi21byax6np0ivr2a9b9qnzywhl06rbkx9l0r2yfn"; depends=[]; }; + ores = derive2 { name="ores"; version="0.2.0"; sha256="164z4r4894r8j5vigh5rsqwkslmgdwj0rsl088fq0hb40p3w1nd0"; depends=[httr]; }; orgR = derive2 { name="orgR"; version="0.9.0"; sha256="1q4qbwnbhmja8rqiph7g7m4wxhzhk9mh91x1jgbnky8bs4ljdgrx"; depends=[data_table ggplot2 ggthemes lubridate stringr]; }; orientlib = derive2 { name="orientlib"; version="0.10.3"; sha256="1qi46hkz73b8722zc3w6wvsq1ydlk37yxn9rd1dqygqbs1svkmvv"; depends=[]; }; + originr = derive2 { name="originr"; version="0.2.0"; sha256="06n5qshk4dq6ac4prnhzymz7gcmp6m2zdc8d9d13ii7n7xa0ymx2"; depends=[data_table httr jsonlite taxize xml2]; }; orloca = derive2 { name="orloca"; version="4.2"; sha256="14accc5kcvvin5qav6g3rx10by00r0b8970nd09w4c09nhwyblcd"; depends=[]; }; orloca_es = derive2 { name="orloca.es"; version="4.1"; sha256="0nzhg7vzfxlmryw5ijww8z2b1g9cmgcgzi3gsgigsgn4shnc2hni"; depends=[orloca]; }; oro_dicom = derive2 { name="oro.dicom"; version="0.5.0"; sha256="05dmhfglp76apyilwicf3n2ylyjhp1gq6b9bnzsiiblpjnfpia43"; depends=[oro_nifti]; }; - oro_nifti = derive2 { name="oro.nifti"; version="0.5.2"; sha256="0zf5lb51b81602lwg118x3j2myrbrm6wjaflbpxxzqigz4q60rkg"; depends=[abind bitops]; }; + oro_nifti = derive2 { name="oro.nifti"; version="0.7.2"; sha256="00s5ml1wmxly6mjnhkxjigivjnylyxq39p2zwzhk8vaj5llk2x1q"; depends=[abind bitops RNifti]; }; oro_pet = derive2 { name="oro.pet"; version="0.2.3"; sha256="06agl6rvd01h6mnilj0vl52dxw6b7b41vl6vmbvaq5qy1wmiaiz7"; depends=[oro_dicom oro_nifti]; }; orsifronts = derive2 { name="orsifronts"; version="0.1.1"; sha256="1js4q2s1mn263x8szl5q47ajfxv9lsjd5zyphwyhbkqrnd8ijd3w"; depends=[sp]; }; orsk = derive2 { name="orsk"; version="1.0-2"; sha256="0h0h1z8ddn2nkc7c6c4s39sxwvav562p0lcwy13441rrlibywbhq"; depends=[BB BHH2]; }; orthogonalsplinebasis = derive2 { name="orthogonalsplinebasis"; version="0.1.6"; sha256="07rbd0fhs2gsk7wj41y2h7wf6pfg324vzv2al753d8kqyx5ns2dj"; depends=[]; }; orthopolynom = derive2 { name="orthopolynom"; version="1.0-5"; sha256="1gvhqx6jlh06hjmkmbsl83gri0gncrm3rkliyzyzmj75m8vz993d"; depends=[polynom]; }; osDesign = derive2 { name="osDesign"; version="1.7"; sha256="0y68pnsmq4nlmfsn28306q2kxab200pirr6ha0w4himzpnw1sil3"; depends=[]; }; + osc = derive2 { name="osc"; version="1.0.0"; sha256="08ac64xqq3diw9xkialvxjvqk5khd3kjdxdi3zic2if05i3rb4ns"; depends=[raster]; }; osd = derive2 { name="osd"; version="0.1"; sha256="1py9p15nrcydr8w9ilxkxabiz9zlqnls8xn9avjkxd8x6602jx6p"; depends=[JADE nnls]; }; + osi = derive2 { name="osi"; version="0.1.0"; sha256="1wzkvsqifk0g29jnpvykn26myq27pxll3glqlp74djkz0rbpv7aa"; depends=[httr]; }; osmar = derive2 { name="osmar"; version="1.1-7"; sha256="0q6d8nw7d580bnx66mjc282dx45zw9srczz90b520hjcli4w3i3r"; depends=[geosphere RCurl XML]; }; - osrm = derive2 { name="osrm"; version="2.0.0"; sha256="0sapp03i3dbvsfwvnzj3pwqbkrx73qgdaikpnjl4k8bv424p0xc0"; depends=[jsonlite RCurl sp]; }; + osmplotr = derive2 { name="osmplotr"; version="0.2.3"; sha256="1gvr3plni62hrs1i4b1id863ib0d4l4gfh8h40nyvk16mgvp4a4c"; depends=[curl ggm ggplot2 httr igraph osmar rgeos sp spatstat XML]; }; + osrm = derive2 { name="osrm"; version="3.0.0"; sha256="099k0cfkzzq5pdb17j9ian8x6s3i13f6lcyhy4ls0dnhdgk4d7l1"; depends=[bitops gepaf jsonlite raster RCurl rgeos sp]; }; + otrimle = derive2 { name="otrimle"; version="0.4"; sha256="0xhsx11rpm9179jm5p00x2c125r15bhslsnll182bhw282vwx2kx"; depends=[mclust prabclus]; }; ouch = derive2 { name="ouch"; version="2.9-2"; sha256="05c3bdxpjcgmimk0zl9744f0gmchhpm7myzjrx5fhpbp5h6jayaf"; depends=[subplex]; }; outbreaker = derive2 { name="outbreaker"; version="1.1-7"; sha256="0bq8an4hcs88279nkbn92x5s36i3sb64xqdlcrxy8fdk05w0cmg4"; depends=[adegenet ape igraph]; }; + outbreaks = derive2 { name="outbreaks"; version="1.2.0"; sha256="1snycxcllc5vq93ay7xyjw6g4130dvcmja56wvdxixvc5bbv4z1d"; depends=[]; }; outliers = derive2 { name="outliers"; version="0.14"; sha256="0vcqfqmmv4yblyp3s6bd25r49pxb7hjzipiic5a82924nqfqzkmn"; depends=[]; }; overlap = derive2 { name="overlap"; version="0.2.6"; sha256="066zf4i6anklqqmxf06lyfr9w4scw0djqgp8rabgpzwkvk9xgxmb"; depends=[]; }; - overlapping = derive2 { name="overlapping"; version="1.2"; sha256="0rcil0925lj166mpgc8xvy3fnp9y84mc902jqd2lyxkqrpc0zv1s"; depends=[lattice]; }; - oz = derive2 { name="oz"; version="1.0-20"; sha256="1d420606ldyw2rhl8dh5hpscvjx6vanbq0hrg81m7b6v0q5rkfri"; depends=[]; }; + overlapping = derive2 { name="overlapping"; version="1.4.0"; sha256="00rn55wvcj32qgjbjplaq32k2vxzrdlbp8dh7scyw78wyn8bdv2c"; depends=[ggplot2]; }; + owmr = derive2 { name="owmr"; version="0.7.2"; sha256="0206i5zzmfjdd43qziis6kqc0zsvn0l7v5sspjrywjxw2gyjfmwb"; depends=[httr jsonlite magrittr]; }; + oz = derive2 { name="oz"; version="1.0-21"; sha256="0p4r8qbpv7q6vad940540pd3lk79pyfj41h2cn22hsy1j0va1qbv"; depends=[]; }; p2distance = derive2 { name="p2distance"; version="1.0.1"; sha256="1ims8i5z5k97kjpdysgx8g7lgvnvf7amahcrssw7bk38bvbxawni"; depends=[]; }; p3state_msm = derive2 { name="p3state.msm"; version="1.3"; sha256="0gbrka62ylxx64r3abpk60y92k2lk5smlf8na68qazph8llsl2rv"; depends=[survival]; }; pAnalysis = derive2 { name="pAnalysis"; version="2.0"; sha256="0pykdlbynzgcbnjs8xs8frgncf53l8qgf6na34adq7da76n570hi"; depends=[coin ggplot2]; }; pBrackets = derive2 { name="pBrackets"; version="1.0"; sha256="0cwv609hzp8anfv3cgfbspz8w0g1ljfz05wm4xfhwy15v32fckrj"; depends=[]; }; + pETM = derive2 { name="pETM"; version="0.1.5"; sha256="0a677jbaxhvcjz6846cd1y867srgrmxm78k06xva3hds7hbycm3w"; depends=[Matrix]; }; pGLS = derive2 { name="pGLS"; version="0.0-1"; sha256="1rlk8q09sikf4vpzsx0c7s6qqh2hxf8dy2bgcm4nnkbv2nfjz438"; depends=[MASS]; }; + pGMGM = derive2 { name="pGMGM"; version="1.0"; sha256="1hkczz38g8a8253jm8vhm8948fs91g6b2rfzkz47srkkby9ksa4x"; depends=[JGL MASS mvtnorm]; }; + pMineR = derive2 { name="pMineR"; version="0.31"; sha256="1j71dcldzmk4kzspx4v5s3vqqkllgwkckfm1g145qgg26c1gyc6l"; depends=[cluster DiagrammeR stringr XML]; }; pRF = derive2 { name="pRF"; version="1.2"; sha256="17srabk7mam16rdzc5g9ggdrhjjk8wibny40gxvgzkv7qgq7m80x"; depends=[dplyr ggplot2 multtest permute randomForest reshape2]; }; - pROC = derive2 { name="pROC"; version="1.8"; sha256="0rva08hnaah9qv6hapzgfsdy2g06fdvnjmw0l733wm5j2g44ps8m"; depends=[plyr Rcpp]; }; - pRSR = derive2 { name="pRSR"; version="3.0.2"; sha256="1s81mi172mwxhp786c1fl579cg87valppr0z958ssvxsvg5hbfxy"; depends=[]; }; + pROC = derive2 { name="pROC"; version="1.9.1"; sha256="1fc5wq4skry52jjwldp4dyxwvss1g93ji5915zv9zz3c9nxd3hpq"; depends=[plyr Rcpp]; }; + pRSR = derive2 { name="pRSR"; version="3.1.1"; sha256="1irx95b7cwvx3gpn9brjjn4k947m8frz542r18nilc9f1159mb3s"; depends=[]; }; pSI = derive2 { name="pSI"; version="1.1"; sha256="0cvw38dqqlyx7cpl27hq33f5xns2d0019lyr98pwndcnbp09mx0b"; depends=[gdata]; }; pa = derive2 { name="pa"; version="1.2-1"; sha256="1pfgzxirkb0p8f6smjlrbp1qpsh0vsvqf306cvldaj9zx8cw0q9f"; depends=[ggplot2]; }; pacbpred = derive2 { name="pacbpred"; version="0.92.2"; sha256="13p405vh9rf1r5idxl5payc85vwlzcd87wm15163vc9gmil1ncsf"; depends=[]; }; pack = derive2 { name="pack"; version="0.1-1"; sha256="0x4p8clwp49s2y67y7in530xwhjngnqwagf9xnyb1jp0z3myd3r7"; depends=[]; }; packClassic = derive2 { name="packClassic"; version="0.5.2"; sha256="04a1sg9vx3r0sq54q9kj0kpahp6my246jy3bivgy09g5fjk0dmkj"; depends=[]; }; - packHV = derive2 { name="packHV"; version="1.8"; sha256="0dr2picjd7mm633vw29524f3n4jpyillpzi9cg7yc2cymxnrgvyg"; depends=[survival WriteXLS]; }; + packHV = derive2 { name="packHV"; version="2.1"; sha256="1phwcm1m9in0nkyk3hminbm60iw9jp7vyd7gn871g8shfdm8ixyw"; depends=[survival WriteXLS]; }; packS4 = derive2 { name="packS4"; version="0.9.3"; sha256="0kkh4lfdbr2ydyfpymwrdkms1d4mj8430p6vxvj5wrgl4vh85gwd"; depends=[codetools]; }; + packagedocs = derive2 { name="packagedocs"; version="0.4.0"; sha256="0zw9ana7s42ardphhdaklba02yjj1v8gliq4l98397mjmzc6f4xd"; depends=[crayon devtools digest evaluate highlight htmltools lazyrmd magrittr rmarkdown stringr whisker yaml]; }; packagetrackr = derive2 { name="packagetrackr"; version="0.1.1"; sha256="0xjq27j7bd7lps0vp9gdinxn19wl10k2cp9wb2xjih7p6l0wd57g"; depends=[dplyr httr magrittr rappdirs]; }; packcircles = derive2 { name="packcircles"; version="0.1.1"; sha256="0xvw283gyjak3j66g8x5jy2jdrkcxwhfzck2wdq2q6a6nxbyb0i1"; depends=[Rcpp]; }; - packrat = derive2 { name="packrat"; version="0.4.7"; sha256="0160ani3zlvffc2ap0cjhw8d727vxs80k2xh59mj04swiy115g48"; depends=[]; }; - pacman = derive2 { name="pacman"; version="0.3.0"; sha256="10fjkr4zjcx7cyfmnpdnb96swxizhdqhvzgb5crymrafxqvg00c7"; depends=[devtools]; }; - paco = derive2 { name="paco"; version="0.2.3"; sha256="1qdaqy3m105wrafxjld6qhrvwcyrjb7ryrh782zpvy9m8yhy0p4j"; depends=[plyr vegan]; }; + packrat = derive2 { name="packrat"; version="0.4.8-1"; sha256="1wvjyvb7yy6hq188msqzf8qa00lhll865jp939byc6d4zpscm0x2"; depends=[]; }; + pacman = derive2 { name="pacman"; version="0.4.1"; sha256="0qh3nxgfn26q3mwv3zyc6qq4h00mjdjrn2pfbfmdbjqjg4q75ypz"; depends=[devtools]; }; + paco = derive2 { name="paco"; version="0.3.1"; sha256="18k4ls6y9jdknx3dn2494chjigzn8hrsh332ha8a01snfzhp66m0"; depends=[plyr vegan]; }; + pacotest = derive2 { name="pacotest"; version="0.2"; sha256="1z8jiz951jj13dmgl75yjdvahph0jhk0d6n2f8xgzaj4rwmli6i8"; depends=[ggplot2 gridExtra numDeriv Rcpp RcppArmadillo VineCopula]; }; + pact = derive2 { name="pact"; version="0.5.0"; sha256="043hbydj5f6889xrfsrn8jrgid2nnbsz6d7jpn4hywwa97snw4ny"; depends=[glmnet survival]; }; + padr = derive2 { name="padr"; version="0.2.1"; sha256="18cv4pz8zkn2a4m85yz8k68clq1zfgb6y7f6skdsflhg05mxq2qs"; depends=[Rcpp]; }; paf = derive2 { name="paf"; version="1.0"; sha256="0wrqn67jfrjjxwcrkka6dljgi3mdk00vfjkzzcv2v7c97gx1zvwn"; depends=[survival]; }; pagenum = derive2 { name="pagenum"; version="1.0"; sha256="0iqx6lgbzcz5girw8cl934jcah7l32zdrbs70cxx8gs2x5rbfwkz"; depends=[]; }; - pageviews = derive2 { name="pageviews"; version="0.2.0"; sha256="1pfv7nfj4s51dawq6z9vwhs92wdl7hjq6pi6rsv0qh6pp9adl7sk"; depends=[httr jsonlite]; }; + pageviews = derive2 { name="pageviews"; version="0.3.0"; sha256="031y67nqqvf3fa2273m7z2cldda0ijh63qwkh4gis3hz9hfril0v"; depends=[curl httr jsonlite]; }; + paintmap = derive2 { name="paintmap"; version="1.0"; sha256="1qw5725yjymxmfhffqjx4lbmzj437c7qwr8xrzmf52f0m28nl3vk"; depends=[]; }; pairedCI = derive2 { name="pairedCI"; version="0.5-4"; sha256="03wf526n3bbr2ai44zwrdhbfx99pxq1nbng9wsbndrdg2ji4dar2"; depends=[]; }; pairheatmap = derive2 { name="pairheatmap"; version="1.0.1"; sha256="1awmqr5n9gbqxadkblpxwcjl9hm73019bwwfwy1f006jpn050d6l"; depends=[]; }; pairsD3 = derive2 { name="pairsD3"; version="0.1.0"; sha256="0ql6pqijf24pfyid52hmf5fmh4w1ca3sm47z9vknqpnjbn47v8q2"; depends=[htmlwidgets shiny]; }; @@ -6007,114 +7498,135 @@ in with self; { palaeoSig = derive2 { name="palaeoSig"; version="1.1-3"; sha256="1zm8xr7fpnnh6l4421vjavi6bg44iars3mna4r5fw3spmbswyv7b"; depends=[MASS mgcv rioja TeachingDemos vegan]; }; paleoMAS = derive2 { name="paleoMAS"; version="2.0-1"; sha256="1hhb5wbj4m3ch8wnvd1zkl5bk6wa9nl6jl1dhm4z6yqkh29yn9z6"; depends=[lattice MASS vegan]; }; paleoTS = derive2 { name="paleoTS"; version="0.5-1"; sha256="18f5lkgzvndc8s7w7d7dfdlqf37adrmzabpwkavjw1zkpb1dga8c"; depends=[doParallel foreach iterators mnormt]; }; - paleobioDB = derive2 { name="paleobioDB"; version="0.3"; sha256="1vcfssi6w0m2wd2smyjxp1zf0y48y95386kkb8qdndqw99g089w8"; depends=[gtools maps plyr raster RCurl rjson scales]; }; - paleofire = derive2 { name="paleofire"; version="1.1.8"; sha256="1g3m1chdqbivq5s7p1n53cfzq1cm5v0wkj4f4s0dih6pcid44si7"; depends=[GCD ggplot2 lattice locfit plyr raster rgdal]; }; - paleotree = derive2 { name="paleotree"; version="2.6"; sha256="08861pvr86dbynx687vbxziq3v08ii6hx0g8h5zcskz87x32q2lc"; depends=[ape phangorn phytools]; }; - palettetown = derive2 { name="palettetown"; version="0.1.0"; sha256="0zpqbd9g50vyidd0chhk2xqlzx7mnzyilr4c84lci1xw3r3avxp0"; depends=[]; }; + paleobioDB = derive2 { name="paleobioDB"; version="0.5.0"; sha256="195w0jzg8bhlqbsd3shi161wqr9cff6q85ik0x8w4laazzxs0jhr"; depends=[gtools maps plyr raster RCurl rjson scales]; }; + paleofire = derive2 { name="paleofire"; version="1.1.9"; sha256="0x11g90g6hlxw5407mmb6z4w7iqmipb5f0n3czs834ji5jhxl1x8"; depends=[GCD ggplot2 lattice locfit plyr raster rgdal]; }; + paleomorph = derive2 { name="paleomorph"; version="0.1.3"; sha256="0s119va1j4sqmc08wrk1z1ywdvam0qcn6lgla93bavpw4q7y9zbm"; depends=[]; }; + paleotree = derive2 { name="paleotree"; version="2.7"; sha256="0h2rch89p8n1i1zdy3xj5966hsz47a49r5baqvn1s9c9pr024czk"; depends=[ape phangorn phytools]; }; + palettetown = derive2 { name="palettetown"; version="0.1.1"; sha256="1kjj1sqib1ns7895plp8c7h317pxwbyxi2shjkcgadkcsv2yjsxn"; depends=[]; }; palinsol = derive2 { name="palinsol"; version="0.93"; sha256="0k29sl2j7yf4yc0dhb047rxwg9np9l6pdwv6wyb4j80yc07vc9am"; depends=[gsl]; }; - palr = derive2 { name="palr"; version="0.0-4"; sha256="0rcb01lpi8zapnml1spx4ixxwbq9qh42sisqzrg7gxrkcjrbqxgl"; depends=[]; }; - pamctdp = derive2 { name="pamctdp"; version="0.3.1"; sha256="1fnadgfd2ikis49j9zl2ijj8gim8lpbygwxjj6ri9jyrc1qmj9jb"; depends=[ade4 FactoClass xtable]; }; + palm = derive2 { name="palm"; version="1.0.0"; sha256="0cjg5qal2bakl9v1qgs598rcvaa7qpwpqwxbbazfwy3yhmfrdd8v"; depends=[gsl mvtnorm R6 Rcpp spatstat]; }; + palr = derive2 { name="palr"; version="0.0.6"; sha256="163c0kcsl0k3fp5q9afv3pb8246j2b3jzmd6g2vcgxb8nhs8wr2f"; depends=[]; }; + pals = derive2 { name="pals"; version="1.0"; sha256="06wfa6dbqir9353rx2yph4s8n8d14gf6bvl907c07z9i9ml719sj"; depends=[colorspace dichromat mapproj maps rgl]; }; + pamctdp = derive2 { name="pamctdp"; version="0.3.2"; sha256="0qs8lj5g2fx5rfd0afv76x9x7wqm333qmjv6zzip6pf11dzkghyj"; depends=[ade4 FactoClass xtable]; }; pamm = derive2 { name="pamm"; version="0.9"; sha256="01dv70ca3zif2b2fkx4xjl24x9p9kc63wf0dj5agdjp5qgbkp1p5"; depends=[gmodels lattice lme4 lmerTest mvtnorm]; }; pampe = derive2 { name="pampe"; version="1.1.2"; sha256="092n04nrp886kd163v32f5vhp9r7gnayxzqb6pj57ilm5w1yrcsk"; depends=[leaps]; }; pamr = derive2 { name="pamr"; version="1.55"; sha256="1hy3khb0gikdr3vpjz0s245m5zang1vq8k93g7n9fq3sjfa034gd"; depends=[cluster survival]; }; pan = derive2 { name="pan"; version="1.4"; sha256="1p3nigmhrnlch86g89hn7l0wvkifx3k9n59g0psi95yck43kza76"; depends=[]; }; pander = derive2 { name="pander"; version="0.6.0"; sha256="0jgylffc4ymvppaqsflxaj1l18c4x49jbz0b86jjsa00xqdyk4cn"; depends=[digest Rcpp]; }; + pandocfilters = derive2 { name="pandocfilters"; version="0.1-1"; sha256="18n155rkbr3gq5lsb0bh1v1v0z0r6xr2ald3nh7xh3v9qwxpmsz1"; depends=[jsonlite]; }; panelAR = derive2 { name="panelAR"; version="0.1"; sha256="1ka2rbl9gs65xh2y2m4aqwh5qj4szibjy101hqfmza9wmdh25gpq"; depends=[car]; }; - panelaggregation = derive2 { name="panelaggregation"; version="0.1"; sha256="19426hab4rvgn8k2c7x327k4ymihas59jbys0nmrfgg074x0xdnm"; depends=[data_table]; }; - pangaear = derive2 { name="pangaear"; version="0.1.0"; sha256="0g5wgm1g3hbxwmlpra70zir9sl0zhd4xm6rj9bv98bszpzl3x6l6"; depends=[httr oai XML]; }; - papeR = derive2 { name="papeR"; version="1.0-0"; sha256="0c8zljbw0pzaqx7j76245wpmk2104n0cvvddm6rf7v6cfvw72jws"; depends=[car gmodels xtable]; }; + panelaggregation = derive2 { name="panelaggregation"; version="0.1.1"; sha256="0x8ldqb9216pclfvs4ymdpian43v2ydkyflpf0k6lcn35r04xfr6"; depends=[data_table]; }; + pangaear = derive2 { name="pangaear"; version="0.2.4"; sha256="0h504b4wnqahy3sq35yq48rafaikkidfqdx96hv8999ag7kyndl2"; depends=[httr jsonlite oai rappdirs tibble xml2]; }; + papayar = derive2 { name="papayar"; version="1.0"; sha256="11vkjhazfwfixsr6dba5jrcsr3r3mqgvj5s070b4gp70d6k1z8s5"; depends=[htmltools neurobase oro_nifti servr]; }; + papeR = derive2 { name="papeR"; version="1.0-2"; sha256="1pp6zzdqg9lj61f8p90sxl30vp9knmis7154fmfpm6pynbgr46ms"; depends=[car gmodels xtable]; }; + paperplanes = derive2 { name="paperplanes"; version="0.0.1.9"; sha256="1d9grc95xqxn91lvk8v7w3z90bhl8savkhihwshyjp8ij2xpzfkl"; depends=[]; }; parallelMCMCcombine = derive2 { name="parallelMCMCcombine"; version="1.0"; sha256="05krkd643awqhfrylq9lxr2cmgvnm1msn2x8p1l1483n2gzyklz7"; depends=[mvtnorm]; }; parallelML = derive2 { name="parallelML"; version="1.2"; sha256="05j0rb81i8342m8drwgmgi1w30q96yf501d83cdq4zhjbchphbl1"; depends=[doParallel foreach]; }; parallelMap = derive2 { name="parallelMap"; version="1.3"; sha256="026d018fr2a43cbh8bi2dklzr9fxjzdw5qyq84g2i18v5ibr6bd5"; depends=[BBmisc checkmate]; }; parallelSVM = derive2 { name="parallelSVM"; version="0.1-9"; sha256="0nhxkllpjc3775gpivj8c5a9ssl42zgvswwaw1sdhwg3cxcib99h"; depends=[doParallel e1071 foreach]; }; parallelize_dynamic = derive2 { name="parallelize.dynamic"; version="0.9-1"; sha256="03zypcvk1iwkgy6dmd5bxg3h2bqvjikxrbzw676804zi6y49mhln"; depends=[]; }; - paramlink = derive2 { name="paramlink"; version="0.9-7"; sha256="02h7znac93v8ibra3ni2psxc9lpfhiiw4q8asfyrx400345ifk5b"; depends=[kinship2 maxLik]; }; - params = derive2 { name="params"; version="0.5.0"; sha256="0i2fb305gkjq8j2n3bfphv0zirv2qxl61rcpnci1qvg2cy44qnzn"; depends=[whisker]; }; + paramGUI = derive2 { name="paramGUI"; version="2.1.2"; sha256="054l9hqsvgnwipzqrapkhsk67afz93zv1cligqhjl2wggzn9a8sc"; depends=[colorspace fields shiny shinydashboard TIMP]; }; + paramlink = derive2 { name="paramlink"; version="0.9-9"; sha256="1d2s20ys2zbbpw38l24j57p070h5wf4rgf3gb9lxgx1ibpww1zf0"; depends=[assertthat kinship2 maxLik]; }; + params = derive2 { name="params"; version="0.6.1"; sha256="0w7k8k7z8p1y2w0dhpfssa868xaikfzfdjw2vlj1yl299k5yisax"; depends=[whisker]; }; paran = derive2 { name="paran"; version="1.5.1"; sha256="0nvgk01z2vypk5bawkd6pp0pnbgb54ljy0p8sc47c8ibk242ljqk"; depends=[MASS]; }; parboost = derive2 { name="parboost"; version="0.1.4"; sha256="087b4as0w8bckwqpisq9mllvm523vlxmld3irrms13la23z6rjvf"; depends=[caret doParallel glmnet iterators mboost party plyr]; }; parcor = derive2 { name="parcor"; version="0.2-6"; sha256="10bhw50g8c4ln5gapa7wghhb050a3jmd1sw1d1k8yljibwcbbx36"; depends=[Epi GeneNet glmnet MASS ppls]; }; - parfm = derive2 { name="parfm"; version="2.5.10"; sha256="0mk5y7rvfn873lfbscrp8dqgdsracx59dnp6dzr5rha86k4bn097"; depends=[eha msm survival]; }; + parfm = derive2 { name="parfm"; version="2.7.1"; sha256="0a1fv89vzrziavsy23as6j6hyg4xn7swjrsgax8vpi2rbscy3g5x"; depends=[msm optimx sn survival]; }; parfossil = derive2 { name="parfossil"; version="0.2.0"; sha256="12gsc5n4ycvhzxvq5j0r3jnnrzw1q412dbvmakipyw2yx2l2s7jn"; depends=[foreach fossil]; }; - parma = derive2 { name="parma"; version="1.5-2"; sha256="1yvk0wfcc1mgz2bif6hvw5l7zclbv4pz1cki0ymslrmxapjqnsz8"; depends=[corpcor FRAPO nloptr quadprog Rglpk slam truncnorm]; }; + parma = derive2 { name="parma"; version="1.5-3"; sha256="0yjpmxz20v6k107qylw42yf1b231hzym9dizjcq1kalivvscczc5"; depends=[corpcor nloptr quadprog Rglpk slam truncnorm]; }; parmigene = derive2 { name="parmigene"; version="1.0.2"; sha256="1fsm6pkr17jcbzkj1hbn91jf890fviqk1lq6ls8pihsdgah1zb4d"; depends=[]; }; - parsec = derive2 { name="parsec"; version="1.1"; sha256="02sj2n34n4c6db5s15hbprcx1appasyj8vh2c8my2mppfrk7cnc7"; depends=[]; }; + parsec = derive2 { name="parsec"; version="1.1.2"; sha256="1hf3c23rnxckw4s2vqzbhkjgiir1nv1811saximj0mbih9w2vqpf"; depends=[]; }; parsedate = derive2 { name="parsedate"; version="1.1.1"; sha256="0mr97rw4fzg2v9dh5d4x0b76d5s56gi6zilq69yjhbx78w46apzc"; depends=[]; }; - partDSA = derive2 { name="partDSA"; version="0.9.10"; sha256="1j6ihgyjiy8dnr89xkqvl1dkmdswvknffq7zc15civy0h781azv6"; depends=[survival]; }; + parsemsf = derive2 { name="parsemsf"; version="0.1.0"; sha256="0ijnnajcr7zyh0c1k6bz9qa4fkcly1fd44x3qj7mhlx58gnq4sa4"; depends=[dplyr lazyeval RSQLite stringr tidyr]; }; + partDSA = derive2 { name="partDSA"; version="0.9.14"; sha256="1kp0cdsdjiay349jz22iqfzvspny8s343cfan8xahgf931k9h8p6"; depends=[survival]; }; partialAR = derive2 { name="partialAR"; version="1.0.5"; sha256="1d8nbv3rkf0p4vg8mlb1l5cqzgsqqhigwiq2bnd4npak6fq6syvg"; depends=[data_table FKF ggplot2 MASS plot3D Rcpp tseries urca zoo]; }; partialOR = derive2 { name="partialOR"; version="0.9"; sha256="02vbvln8lswysaafpxq5rxb6crp7yhlc13i42kybv8fr10jaagjj"; depends=[nnet]; }; partitionMap = derive2 { name="partitionMap"; version="0.5"; sha256="0pi066xaaq0iqr0d7cncdzjd7bacmgrivc4qvhqx0y7q1vifrdjm"; depends=[randomForest]; }; partitionMetric = derive2 { name="partitionMetric"; version="1.1"; sha256="1wry9d3s814yp79ayab7rzf8z5l2mwpgnrc5j7d2sac24vp4pd48"; depends=[]; }; partitions = derive2 { name="partitions"; version="1.9-18"; sha256="1brzvk2zbrh0s4vbaiib6zkpcyx7ghc6ws36h3diz5nxbx3g95ik"; depends=[gmp polynom]; }; - partools = derive2 { name="partools"; version="1.1.3"; sha256="07bvhs6a53cm0gvmxbibg8rhzvjxrhjgl65ib348a4q43pgap2v1"; depends=[]; }; + partools = derive2 { name="partools"; version="1.1.5"; sha256="062rnq35cbzyr6mdpq4w88bxd6c2pzbghxan6j11pipyzvv7qsj3"; depends=[data_table pdist]; }; partsm = derive2 { name="partsm"; version="1.1-2"; sha256="0cv3lgkdkn97bc85iwlv9w5pmqwwwsgb717zxnbgb5mzf4xn3f3g"; depends=[]; }; - party = derive2 { name="party"; version="1.0-25"; sha256="08arvh7bhc67ih1mm6faslw7jgh86f9n9qgswav0mjkg9icny86l"; depends=[coin modeltools mvtnorm sandwich strucchange survival zoo]; }; - partykit = derive2 { name="partykit"; version="1.0-5"; sha256="13x668b7vq49jrpdk0ja7lnrv335xx50g21d7jlv0g5s8laa392d"; depends=[survival]; }; + party = derive2 { name="party"; version="1.2-1"; sha256="1vi0hisph0xscj80ch8gcdp9vrh2k8z5msd2j9p5mvr0f5i5hr7d"; depends=[coin modeltools mvtnorm sandwich strucchange survival zoo]; }; + partykit = derive2 { name="partykit"; version="1.1-1"; sha256="0cl3ir54pafjhk1cvyzx1a8a244x0qa5lky47m7fx1fdj0k7dx6r"; depends=[Formula survival]; }; parviol = derive2 { name="parviol"; version="1.1"; sha256="1sfgic86ssd5wjf9ydss9kjd3m4jmm2d1v896sjsv8bydwymbpx3"; depends=[vioplot]; }; pass = derive2 { name="pass"; version="1.0"; sha256="00dzwg2lnzmrrmzq3fyrs4axswgnsn7f62l2f2a8d8gyf8qzz3nf"; depends=[lars MASS ncvreg]; }; password = derive2 { name="password"; version="1.0-0"; sha256="1ijzqdw54l8wvpy6ys28njvhplzjxzzi5i9y41vjnrr88n13977v"; depends=[]; }; + pasta = derive2 { name="pasta"; version="0.1.0"; sha256="12ps5bhyk3hllfa9smyw8vxglr45xz9kvhkx2v65pb86iqm0r0kg"; depends=[]; }; pastecs = derive2 { name="pastecs"; version="1.3-18"; sha256="0ixlnc1psgqgm71bsf5z5j65lvr92ghpsk9f1ifm94dzjhi6d22i"; depends=[boot]; }; pastis = derive2 { name="pastis"; version="0.1-2"; sha256="0211pzj3xrmqgxjpspij95kmlpa2klpicw49n6pnz2g1fapjy2bd"; depends=[ape caper]; }; patPRO = derive2 { name="patPRO"; version="1.1.0"; sha256="1l6q6glklmfgivs4gw0v8q4qa57wr2bna477sn2v401hcwmgnfyn"; depends=[ggplot2 gridExtra plyr RColorBrewer reshape2]; }; patchDVI = derive2 { name="patchDVI"; version="1.9.1616"; sha256="1akdlzw8v2p1zz09bm88d63jyxj7fv5h50p459p9ml4yc816xvji"; depends=[]; }; patchPlot = derive2 { name="patchPlot"; version="0.1.5"; sha256="1b4k0dvvj6qwyxbqb36knyrawvy5qq8hl45pz896c9rkqhlg02bx"; depends=[datautils]; }; - patchSynctex = derive2 { name="patchSynctex"; version="0.1-3"; sha256="0gbbdszrprshcpnpbnvqmx0wlij2d36fw94ssfbx11d7fmjpaj37"; depends=[stringr]; }; + patchSynctex = derive2 { name="patchSynctex"; version="0.1-4"; sha256="1li3kw7a77sx6dss8pnxzb0p0sdy1kfm1zdnmhhj043zihrryd5p"; depends=[stringr]; }; pathClass = derive2 { name="pathClass"; version="0.9.4"; sha256="1vzmz3bml37wfxsjhkw9fip90sr1iv521ccr7nlf6xd30wavqywk"; depends=[affy Biobase igraph kernlab lpSolve ROCR svmpath]; }; pathdiagram = derive2 { name="pathdiagram"; version="0.1.9"; sha256="1j2h9mmwfi95nwhk9214kcfpb1qrmw249mjaza7i9gijmlicraxz"; depends=[shape]; }; pathmox = derive2 { name="pathmox"; version="0.2.0"; sha256="0hcllnpjjays35yngz309f1gcx9qg5z9h302kg9mhxs90470x4w0"; depends=[plspm tester]; }; - pathological = derive2 { name="pathological"; version="0.0-7"; sha256="0ki8a7i03c4hq7af1zq7n7z1glq15jh03zr4l4m05dblyn0nfsm7"; depends=[assertive_base assertive_files assertive_properties assertive_reflection assertive_strings assertive_types plyr stringr]; }; + pathological = derive2 { name="pathological"; version="0.1-2"; sha256="07g7ps6zfxi98y98kwas95rr5ybfd4bpih5mhkjafc7bn99254n2"; depends=[assertive_base assertive_files assertive_numbers assertive_properties assertive_reflection assertive_strings assertive_types magrittr plyr stringi]; }; + patternplot = derive2 { name="patternplot"; version="0.1"; sha256="1k167vfwizwk6m0qpq9p0wq7y2g9ib6wi9j64wmvpqjw8k77l00r"; depends=[dplyr ggplot2 gtable jpeg png Rcpp RcppParallel]; }; pauwels2014 = derive2 { name="pauwels2014"; version="1.0"; sha256="1b7whn13lgydc69kg1fhnwkxirw0nqq75cfvii0yg0j4p8r1lw42"; depends=[deSolve ggplot2]; }; - pavo = derive2 { name="pavo"; version="0.5-5"; sha256="02xxmblp9k2hrv1ya0sxddd710hhsz5s7kh9xbg7m47h9fkvqy22"; depends=[geometry mapproj rcdd rgl]; }; - pawacc = derive2 { name="pawacc"; version="1.2.1"; sha256="1l2wn69ynr5mza04a5mmzwzigqac8k9xkiaw7sdqv5hn9y7x3sj9"; depends=[SparseM]; }; - pbapply = derive2 { name="pbapply"; version="1.2-0"; sha256="1sr5nr5ljdah2cs2wcfgfd0bzd4y4nk9kgp1wym1v4s9wxcbjc6x"; depends=[]; }; + pavo = derive2 { name="pavo"; version="1.0.0"; sha256="0xi9sb36xc6h8j4h4b46imwy936wi8vlqsv4mfkjka34bn0q7afr"; depends=[geometry mapproj rcdd scatterplot3d]; }; + pawacc = derive2 { name="pawacc"; version="1.2.2"; sha256="0d5k0bq8zmb7sjvba3ljp97mba2iycnw44rnsnn2aajs02l1c2xg"; depends=[SparseM]; }; + pbapply = derive2 { name="pbapply"; version="1.3-1"; sha256="053i92j0ch3msywapdia08mmk1w8bhcs6x7cl0han2r9sfliwkzw"; depends=[]; }; pbatR = derive2 { name="pbatR"; version="2.2-9"; sha256="1p8rj0lzm4pp1svgy7xia2sclkngzfjbgbikq94s6v92d582wncw"; depends=[rootSolve survival]; }; - pbdBASE = derive2 { name="pbdBASE"; version="0.4-3"; sha256="1jj2bhb0l8cyai3scb73lqf6dl8vq8c16yfmdll11z2zhvpkwdd9"; depends=[pbdMPI pbdSLAP]; }; - pbdDEMO = derive2 { name="pbdDEMO"; version="0.3-0"; sha256="1rrmixpr9zc6dmhif4lmpxfc1zpwy8hfwph31yn1pz5dipmaay88"; depends=[pbdBASE pbdDMAT pbdMPI]; }; - pbdDMAT = derive2 { name="pbdDMAT"; version="0.4-0"; sha256="16039jvm8n4lx82jw5p1i5yylm5fcb9rh39law41wq845a318ihd"; depends=[pbdBASE pbdMPI]; }; - pbdMPI = derive2 { name="pbdMPI"; version="0.3-1"; sha256="0rk38v1iwkzd119xyb18vprc08yvdx1bs55vv1j519zscpppbqfq"; depends=[rlecuyer]; }; + pbdBASE = derive2 { name="pbdBASE"; version="0.4-5"; sha256="0i7rav197787snhw2l5pyb2x0i9d1gl9d7lks2bk0dcxr0ndy9gm"; depends=[pbdMPI pbdSLAP]; }; + pbdDEMO = derive2 { name="pbdDEMO"; version="0.3-1"; sha256="0vr3dvvhr8j6xvdf308nn37y0lkl2ysm93yf0h7rclvqvsk1pf66"; depends=[pbdBASE pbdDMAT pbdMPI]; }; + pbdDMAT = derive2 { name="pbdDMAT"; version="0.4-2"; sha256="1xiwfpi8r0l8jlfrc35aknm09y4qbn0hvvkscdpcxv9q7zifvl3v"; depends=[pbdBASE pbdMPI]; }; + pbdMPI = derive2 { name="pbdMPI"; version="0.3-3"; sha256="0bgnx2d7ykfzq85jkiggwakqz2ngmvf7d4lx8qp95w272bkpm779"; depends=[rlecuyer]; }; pbdNCDF4 = derive2 { name="pbdNCDF4"; version="0.1-4"; sha256="0fd29mnbns30ck09kkh53dgj24ddrqzks4xrrk2hh1wiy7ap1h95"; depends=[]; }; - pbdPROF = derive2 { name="pbdPROF"; version="0.3-0"; sha256="0k3d70r01zlldqvz638fgizndfcaczjq79hr3ran3a6mm6jfn5z9"; depends=[]; }; - pbdSLAP = derive2 { name="pbdSLAP"; version="0.2-1"; sha256="1yl7hk7h285nkgf4ayprjgm0gai848igvhgym5y0bqnnlir8kdqx"; depends=[pbdMPI rlecuyer]; }; - pbdZMQ = derive2 { name="pbdZMQ"; version="0.2-1"; sha256="1afav138zkc4m0qymyprh20fgkc225v5yb966058jphzvm21n6rb"; depends=[R6]; }; + pbdPROF = derive2 { name="pbdPROF"; version="0.3-1"; sha256="0a7c31605si062vbwcwngv770axlwyhh00cvdfqw3hv421p61sj8"; depends=[]; }; + pbdRPC = derive2 { name="pbdRPC"; version="0.1-1"; sha256="0ddn6ba9nvrh90jii2z9jx4graqaa985ja2q4h3q5q2d6dpm7j7r"; depends=[]; }; + pbdSLAP = derive2 { name="pbdSLAP"; version="0.2-2"; sha256="0d7hj1rq4vmp9i4v7d3pjivqpw0pv06xjl4wlnjj42jfxdg70yvh"; depends=[pbdMPI rlecuyer]; }; + pbdZMQ = derive2 { name="pbdZMQ"; version="0.2-5"; sha256="12qgnzhc0lkzmkg143y0wlvpsa0qqw1rmv7x8c67ixd4pbwzcym7"; depends=[R6]; }; pbivnorm = derive2 { name="pbivnorm"; version="0.6.0"; sha256="05jzrjqxzbcf6z245hlk7sjxiszv9paadaaimvcx5y5qgi87vhq7"; depends=[]; }; + pbkrtest = derive2 { name="pbkrtest"; version="0.4-6"; sha256="00cw18q7wvddzjrbxz917wkix6r7672vi2wmsp4gwgzady8vha4x"; depends=[lme4 MASS Matrix]; }; + pbmcapply = derive2 { name="pbmcapply"; version="1.2.1"; sha256="1dlpiphvl8rl08r7lml2mky137kahqij102wyjif1yk3xwdds8ca"; depends=[future]; }; pbo = derive2 { name="pbo"; version="1.3.4"; sha256="0v522z36q48k4mx5gym564kgvhmf08fsadp8qs6amzbgkdx40yc4"; depends=[lattice]; }; pbs = derive2 { name="pbs"; version="1.1"; sha256="0cpgs6k5h8y2cia01zs1p4ri8r7ljg2z4x8xcbx73s680dvnxa2w"; depends=[]; }; - pcIRT = derive2 { name="pcIRT"; version="0.2"; sha256="18rqyhkzjaqjvsyh3vr3dv9jwqvsa28d0vhnnzj72na6h6rx31w4"; depends=[combinat Rcpp]; }; - pca3d = derive2 { name="pca3d"; version="0.8"; sha256="03ghncfpma1fwby8kxm0v90l795mknz8s4y81l24f3n7mmhighn6"; depends=[ellipse rgl]; }; + pcIRT = derive2 { name="pcIRT"; version="0.2.2"; sha256="0sf6kkcsblc758sb1gkl4ryr72w0xhkd9nr4xdns8c9dfg9qcw1h"; depends=[combinat Rcpp]; }; + pca3d = derive2 { name="pca3d"; version="0.10"; sha256="1bpm4sbj7h2fd0h5ybjhq8g61l8v2fbc92yiiascdgfili85zsf3"; depends=[ellipse rgl]; }; pcaBootPlot = derive2 { name="pcaBootPlot"; version="0.2.0"; sha256="1320d969znk9xvm1ylhc3a31nynhzyjpbg1fsryq72nhf8jxijaa"; depends=[FactoMineR RColorBrewer]; }; - pcaL1 = derive2 { name="pcaL1"; version="1.3"; sha256="026cgi812kvbkmaryd3lyqnb1m78i3ql2phlvsd2r691y1j8w532"; depends=[]; }; - pcaPP = derive2 { name="pcaPP"; version="1.9-60"; sha256="1rqq4zgik7cgnnnm8il1rxamp6q9isznac8fhryfsfdcawclfjws"; depends=[mvtnorm]; }; - pcadapt = derive2 { name="pcadapt"; version="2.2"; sha256="0nlm1wmkcrdacfaixhna42z9vdcb3j1nczkd2qcsx6kklkrjhvik"; depends=[MASS robust]; }; - pcalg = derive2 { name="pcalg"; version="2.2-4"; sha256="0qx0impxh6pzbgdhpkbl13qfql4zpsa3xiy4hc640d15zxprv6zw"; depends=[abind bdsmatrix BH clue corpcor fastICA ggm gmp graph igraph RBGL Rcpp RcppArmadillo robustbase sfsmisc vcd]; }; + pcaL1 = derive2 { name="pcaL1"; version="1.4.1"; sha256="07qsi3k6l9ga1ixqmz8sw1hmjqg0l3rv1czwwgb6izsmjkcxfyzd"; depends=[]; }; + pcaPA = derive2 { name="pcaPA"; version="2.0.2"; sha256="14hi09qksr1z54l268yv4g2x5hlikir7zir4ccd9yi5z1918ksj5"; depends=[ggplot2 ltm mc2d polycor sfsmisc]; }; + pcaPP = derive2 { name="pcaPP"; version="1.9-61"; sha256="0afwi17grkac5yckipfsyqq1r1qgljzb3w5abc9mc6pzb7hrbhvx"; depends=[mvtnorm]; }; + pcadapt = derive2 { name="pcadapt"; version="3.0.4"; sha256="031ql3xppjkqrm17bvccj61hyf38skjb4qv6rs0l1h2ib8jql8ka"; depends=[ggplot2 MASS robust vcfR]; }; + pcalg = derive2 { name="pcalg"; version="2.4-5"; sha256="1gfwx26r76d5arqhs03wldaycx1yj55bdwlaam4w42g7hi5bzdbm"; depends=[abind bdsmatrix BH clue corpcor fastICA ggm gmp graph igraph RBGL Rcpp RcppArmadillo robustbase sfsmisc vcd]; }; + pcdpca = derive2 { name="pcdpca"; version="0.2.1"; sha256="0vl661pjlfcgqmnw3c1032aci4akld1pqxchb2fh8y5wap1nhypa"; depends=[fda freqdom]; }; pcev = derive2 { name="pcev"; version="1.1.1"; sha256="0vhn5514dnmhv98bchvsfd6pfjmvbc7hhb9zabgf8syk9rh8y9h8"; depends=[RMTstat]; }; pcg = derive2 { name="pcg"; version="1.1"; sha256="194j72hcp7ywq1q3dd493pwkn1fmdg647gmhxcd1jm6xgijhvv87"; depends=[]; }; - pch = derive2 { name="pch"; version="1.1"; sha256="1vwdp4j66p2vj47psdazbaq7g0n4ldl0295z0v0k5d9q8j719ww2"; depends=[survival]; }; - pcnetmeta = derive2 { name="pcnetmeta"; version="2.3"; sha256="1qcz18cac59i1c6limwknzwsl7svplls9i45jvvfqz91p8q68cgl"; depends=[coda rjags]; }; + pch = derive2 { name="pch"; version="1.3"; sha256="13pfrvp539fz4hxp08yil93caw3cjdna7xnky5fqd0lhc84fwq76"; depends=[survival]; }; + pcnetmeta = derive2 { name="pcnetmeta"; version="2.4"; sha256="1d7cjf15blh0ysc064n8yil77yj799bsff0rdjvimaa2hbxpnk98"; depends=[coda rjags]; }; pco = derive2 { name="pco"; version="1.0.1"; sha256="0k1m450wfmlym976g7p9g8arqrvnsxgdpcazk5kh3m3jsrvrcchf"; depends=[]; }; + pcrcoal = derive2 { name="pcrcoal"; version="1.2.0"; sha256="0rd610ny8p7by3gi6kk130ii0qcswqsng5mzmxz8hrxqk0cs4c9x"; depends=[ape ggplot2 phylosim]; }; + pcrsim = derive2 { name="pcrsim"; version="1.0.1"; sha256="004xrxnfkq1a8y27p7v4xz7jf3y3h5fkxiy2vyqdqv2yqhqdbzpg"; depends=[data_table ggplot2 gWidgets mc2d plyr strvalidator]; }; pcse = derive2 { name="pcse"; version="1.9"; sha256="04vprsvcmv1ivxqrrvd1f8ifg493byncqvmr84fmc0jw5m9jrk3j"; depends=[]; }; - pdR = derive2 { name="pdR"; version="1.3"; sha256="0y81nlvq5vwf6021m5ns6j4l44c5456jkbs2x9y7jfkw6r3v2ddf"; depends=[]; }; + pdR = derive2 { name="pdR"; version="1.5"; sha256="072ra8czfvgcgkbdfkjhbpk7f23zh717f9sh84vls9j0wyrai6hn"; depends=[boot car coefplot lmtest papeR plm sandwich]; }; + pdSpecEst = derive2 { name="pdSpecEst"; version="1.0.0"; sha256="0jd7540v7zdg4l5i6i7pdwc7bgnpkhdfpf5b9bjx2gka592swhq4"; depends=[astsa Rcpp RcppArmadillo]; }; pdc = derive2 { name="pdc"; version="1.0.3"; sha256="0503n7aiy0qrl790yfjvpm7bbyz1i4818rlg96q0fvzb58zqmyvc"; depends=[]; }; pdfCluster = derive2 { name="pdfCluster"; version="1.0-2"; sha256="0kbci54dlzn736835fh18xnf2pmzqrdmwa3jim29xcnwa1r2gklb"; depends=[geometry]; }; - pdfetch = derive2 { name="pdfetch"; version="0.1.7"; sha256="12ddf3kyw9pppjn6haq7a3k27vl17016s4h2mc31mbb9fn6h4cjz"; depends=[httr jsonlite lubridate reshape2 XML xts zoo]; }; + pdfetch = derive2 { name="pdfetch"; version="0.1.8"; sha256="0yg5s7nxfbsffi3v1layi7w7y3bcyb1lkyinr0ygnjz5cmqf3df0"; depends=[httr jsonlite lubridate readr reshape2 stringr XML xml2 xts zoo]; }; + pdfsearch = derive2 { name="pdfsearch"; version="0.1.1"; sha256="0k62j6ilv8rmmmasqyb3hklhjqg22jiyx0sxd7f8n0xmlfcjgfqi"; depends=[pdftools tibble]; }; pdftables = derive2 { name="pdftables"; version="0.1"; sha256="1gnwjijr89cczchc7yi4w5xiw0dalbymvj23rymm8cfra34iwn5p"; depends=[httr]; }; - pdftools = derive2 { name="pdftools"; version="0.2"; sha256="0ys3g18gx8ibwj4srcjp37s7fb5ls392knm36jqbbgrl638jglkd"; depends=[Rcpp]; }; + pdftools = derive2 { name="pdftools"; version="1.0"; sha256="1ziflvvzwk3g21s67b09qx023i2chvx09b0675nskvbxssnsc5r5"; depends=[Rcpp]; }; pdist = derive2 { name="pdist"; version="1.2"; sha256="18nd3mgad11f2zmwcp0w3sxlch4a9y6wp8dfdyzvjn7y4b4bq0dd"; depends=[]; }; pdmod = derive2 { name="pdmod"; version="1.0"; sha256="1czpaghp2lcad4j6wxswdfw0n9m0phngy966zr4fr3ciqpx3q129"; depends=[mco]; }; pdolsms = derive2 { name="pdolsms"; version="0.2"; sha256="18gwr1xnm7jbqna911b7haa9sv1i2qvq18w00dkbnj796rh0h78f"; depends=[reshape2]; }; - peacots = derive2 { name="peacots"; version="1.2"; sha256="1qrg6rzdnj0ba6igj4k9m1kc2q7gbwg8kwnmzhkjfza8jl8fqkf2"; depends=[]; }; + pdp = derive2 { name="pdp"; version="0.4.0"; sha256="19kijpz0davv8359a0x623zjbq1jn5agp6wfx36yi87l2dlh254y"; depends=[gridExtra lattice magrittr mgcv plyr viridis]; }; + peacots = derive2 { name="peacots"; version="1.3"; sha256="128qpz06b0giz80lp9yq9l6pxcjglfr97yickg7z64vzzl2jilmq"; depends=[]; }; peakPick = derive2 { name="peakPick"; version="0.11"; sha256="1zf7ff9arm4hkdxrfhb0p8p7npd51icy773g2raaqsfys825xwhm"; depends=[matrixStats]; }; + peakRAM = derive2 { name="peakRAM"; version="1.0.2"; sha256="0mj7f8jqkfky61xag2km0svbgvfmif3c1d8ccav6pv1963cg3cvv"; depends=[]; }; pear = derive2 { name="pear"; version="1.2"; sha256="1ixmyzm72s18qrfv2m8xzh5503k1q90lhddq4sp46m0q7qyxb192"; depends=[]; }; - pearson7 = derive2 { name="pearson7"; version="1.0-1"; sha256="0li32my02gv5yaf4q1w48pjbmij2njkpd15135n9mzjc5ibvf5kh"; depends=[]; }; - pec = derive2 { name="pec"; version="2.4.7"; sha256="1ra8gp46f99z291cbdaln0b5k9w124vi45ncwcvaf5lgxv7c8c74"; depends=[foreach prodlim rms survival]; }; + pearson7 = derive2 { name="pearson7"; version="1.0-2"; sha256="0x8bnlzgmfah8lzdg8skxs7bm8yq0nkrhqi7q43h902j4jl5b8jy"; depends=[]; }; + pec = derive2 { name="pec"; version="2.4.9"; sha256="0r8fg4kic366606pdysyws4an3152fc8mykr7vwixhn63yjk0vpd"; depends=[foreach prodlim rms survival timereg]; }; pedantics = derive2 { name="pedantics"; version="1.5"; sha256="0m5jxzkf1pf657q2klv6idnywg18ki962666nj7sfyl4rq06xhsi"; depends=[kinship2 MasterBayes MCMCglmm]; }; pedgene = derive2 { name="pedgene"; version="2.9"; sha256="1200d6blz7n3krnvhw0i9mz6219vwk0vlj17yzr3fqzyn5cyf91z"; depends=[CompQuadForm kinship2 Matrix survey]; }; pedigree = derive2 { name="pedigree"; version="1.4"; sha256="1dqfvzcl6f15n4d4anjkd0h8vwsbxjg1lmlj33px8rpp3y8xzdgw"; depends=[HaploSim Matrix reshape]; }; pedigreemm = derive2 { name="pedigreemm"; version="0.3-3"; sha256="1bpkba9nxbaxnivrjarf1p2p9dcz6smf9k2djawis1wq9dhylvsb"; depends=[lme4 Matrix]; }; pedometrics = derive2 { name="pedometrics"; version="0.6-6"; sha256="1w9wa73wva6z0d56g221l8qmc5igfypwsa2xq4sn4r501bdy8qpq"; depends=[lattice latticeExtra Rcpp]; }; - pegas = derive2 { name="pegas"; version="0.8-2"; sha256="1sci4m7vvxi8p8lwqkqng04pajrby0c4l91sav3ahvfgj6xldp9q"; depends=[adegenet ape]; }; + pegas = derive2 { name="pegas"; version="0.9"; sha256="0vll6b4ha5l1mf3vpxrwz99m1fzgxwh6xn3z4jg9ggd9sh8jd2wd"; depends=[adegenet ape]; }; pems_utils = derive2 { name="pems.utils"; version="0.2.17.8"; sha256="1qxsjzxb8gdw1hyxgd923s609k98pjdaxs6wm3pg4bl1w8sxqi8d"; depends=[ggplot2 lattice latticeExtra loa plyr RColorBrewer]; }; penDvine = derive2 { name="penDvine"; version="0.2.4"; sha256="0znpvsr7zy2wgy7znha1qiajcrz1z6mypi3f5hpims33z7npa7dl"; depends=[doParallel fda foreach lattice latticeExtra Matrix quadprog TSP]; }; penMSM = derive2 { name="penMSM"; version="0.99"; sha256="1xdcxnagvjdpgnfa5914gb41v5y4lsvh63lbz1d2l8bl9mpff3lm"; depends=[Rcpp]; }; - penalized = derive2 { name="penalized"; version="0.9-45"; sha256="0svmhsh0lv3d571jyhk73zd9slcd6xnp3p0l1ijab9gl2rjhlzz5"; depends=[survival]; }; + penalized = derive2 { name="penalized"; version="0.9-50"; sha256="0q60pgmx2wbnc7i1zf1i0sxn1zy257hl73ii0abx83zpcywq9vb6"; depends=[Rcpp RcppArmadillo survival]; }; penalizedLDA = derive2 { name="penalizedLDA"; version="1.1"; sha256="1bw5wiixmmg1vr3v0d59vh67f0gy2rvr30bi58skvrkb25qcjq6l"; depends=[flsa]; }; penalizedSVM = derive2 { name="penalizedSVM"; version="1.1"; sha256="0zc36cgcrdy4rwhg4hhhahymqfalvc5v2zmqq56ikz5blln82qvq"; depends=[corpcor e1071 lhs MASS mlegp statmod tgp]; }; pencopula = derive2 { name="pencopula"; version="0.3.5"; sha256="1cy36pprbrfabk9n3x4d1xbj1vd2dda7xq3ihj2hzniwn77j63wi"; depends=[fda lattice latticeExtra quadprog]; }; @@ -6125,28 +7637,39 @@ in with self; { peptider = derive2 { name="peptider"; version="0.2.2"; sha256="109z81x6jcsx2651lclff7ak55zb1i89pyi58rxri40aamx4b1x2"; depends=[discreteRV dplyr plyr]; }; pequod = derive2 { name="pequod"; version="0.0-5"; sha256="0mwrgyrxgiifpnpy15qxpdrdmd7dxqihccrnj5nh8fq9fvwymamg"; depends=[car ggplot2]; }; perARMA = derive2 { name="perARMA"; version="1.6"; sha256="0k70lcqhiiffrwzvh51asnhx68qxpnjnxadarvgpgbc7kfy7lv9x"; depends=[corpcor gnm matlab Matrix signal]; }; - performanceEstimation = derive2 { name="performanceEstimation"; version="1.0.2"; sha256="027bcr4ipjwmm1hni2mg7n4hz4mgs1dh2npqmfp8b5kqmccyxpx6"; depends=[doParallel foreach ggplot2]; }; + perccal = derive2 { name="perccal"; version="1.0"; sha256="1akak068d0g70amj5sbvnqbywzy21l4wz11mhp71b7cp4xmr9n12"; depends=[Rcpp RcppArmadillo RcppEigen]; }; + performanceEstimation = derive2 { name="performanceEstimation"; version="1.1.0"; sha256="08jx2zl6xh0rp54xa70gb717wbfdzfrx9b47i3b3ly41qaf85vrc"; depends=[dplyr ggplot2 parallelMap tidyr]; }; + pergola = derive2 { name="pergola"; version="1.0"; sha256="1650ipp2b455xdkznwm7bnxvimad7nbyr9i1lg2vdh64j1qfh7gl"; depends=[seriation]; }; perm = derive2 { name="perm"; version="1.0-0.0"; sha256="0075awl66ynv10vypg63fcxk33qzvxddrp8mi4w08ysvimcyxijk"; depends=[]; }; permGPU = derive2 { name="permGPU"; version="0.14.9"; sha256="10r2qxbvzjxv3520lrn6cwi5akhhwgkhz7yaqxi5vh2f5l0s49wy"; depends=[Biobase foreach RUnit survival]; }; + permGS = derive2 { name="permGS"; version="0.2.3"; sha256="0738jg5k370hjgychv7b93rhwb66xz10hlspbglcgb5w3p1r1rpl"; depends=[coin survival]; }; + permPATH = derive2 { name="permPATH"; version="1.0"; sha256="0893aanh39dw2hqwwhm9c3d30faidg6sa4srsr2f2gs1jin3nqkq"; depends=[R2HTML xtable]; }; permubiome = derive2 { name="permubiome"; version="1.1"; sha256="02fg1g96pg6a87n8mhrls54xp0vnqqsgg39nnjirxr7hd74l71x9"; depends=[ggplot2]; }; - permutations = derive2 { name="permutations"; version="1.0-0"; sha256="0k6y57ya9bk57l6wq4zz8rnsj02vcfhkl5giw30dxdnv4lxqf73s"; depends=[magic numbers partitions]; }; - permute = derive2 { name="permute"; version="0.9-0"; sha256="0w68cqw6s4pixix8bh1qzsy1pm64jqh1cjznw74h82ygp8sj7p73"; depends=[]; }; + permutations = derive2 { name="permutations"; version="1.0-2"; sha256="04lak21x0z1cskgm5w4xdyq59kmyrz64bwfpf332vfka54aiv8lk"; depends=[magic numbers partitions]; }; + permute = derive2 { name="permute"; version="0.9-4"; sha256="1w8wzk1fg9q7wvisnfp2js70dg0m9wi12gkdhpyngpbdcgssahd5"; depends=[]; }; perry = derive2 { name="perry"; version="0.2.0"; sha256="1lfmcq2xsxmfs7cxvhgxcsggslgjicbaks4wcjw1yjh67n559j46"; depends=[ggplot2 robustbase]; }; persiandictionary = derive2 { name="persiandictionary"; version="1.0"; sha256="0rgi36ngpiax3p5zk4cdgf3463vgx7zg5wxscs2j7834yh37jwax"; depends=[]; }; personograph = derive2 { name="personograph"; version="0.1.3"; sha256="07lrlbw4222l1d5rwn0hfqliyk8sqjf6ipz4n2zwcbk113bb8sy7"; depends=[grImport]; }; perspectev = derive2 { name="perspectev"; version="1.1"; sha256="175s1nq5z4gfs5qb39lq230g6n0v8fxzs5hr9j2rgx0knpbjfq03"; depends=[ape boot doParallel foreach ggplot2 mapproj sp]; }; perturb = derive2 { name="perturb"; version="2.05"; sha256="18ydmmp8aq4rf9834dmsr4fr9r07zyn97v8a1jqz3g9njza983la"; depends=[]; }; pesticides = derive2 { name="pesticides"; version="0.1"; sha256="1w180hqqav0mh9sr9djj94sf55fzh4r373a7h08a2nz9nyjpq09w"; depends=[]; }; + petrinetR = derive2 { name="petrinetR"; version="0.1.0"; sha256="0na8srzwi933bva9j3hrn4ji8s58dm28jpxw9q13mpahzch4r454"; depends=[dplyr visNetwork]; }; + pewdata = derive2 { name="pewdata"; version="0.2.0"; sha256="17j8fdn9x6hannr91zyccya523z3zm03gr517xfcyrd0m486xnqb"; depends=[httr magrittr purrr rvest]; }; pez = derive2 { name="pez"; version="1.1-1"; sha256="14n9s604wwh07kjir5kw6sra6bbmnpg00h3zvli3zqd8lx892hm8"; depends=[ade4 ape apTreeshape caper FD Matrix mvtnorm picante quantreg vegan]; }; + pfa = derive2 { name="pfa"; version="1.1"; sha256="0ikdd7ps8wnjp9nm66w447m06hqxnnk553jglxikl2w5d9vk6b31"; depends=[lars POET quantreg]; }; pgam = derive2 { name="pgam"; version="0.4.12"; sha256="0vhac2mysd053bswy3xwpiz0q0qh260hziw6bygpf83vkj94qf2v"; depends=[]; }; - pgirmess = derive2 { name="pgirmess"; version="1.6.4"; sha256="1180dbxy392g06j9n2r0dlbr8rrhf0w1n273pawl8mblmf29vwz2"; depends=[boot maptools rgdal rgeos sp spdep splancs]; }; + pgee_mixed = derive2 { name="pgee.mixed"; version="0.1.0"; sha256="115vvpv54q80486i3xs2yhmfyx476cf4g1v43q6l7wj3jwzcrvbg"; depends=[copula mvtnorm Rcpp RcppArmadillo]; }; + pgirmess = derive2 { name="pgirmess"; version="1.6.5"; sha256="0z3yxdcgngsyy9ylga76gh0m92vfdfzg4asgx6a3g0hnixh0pri3"; depends=[boot maptools rgdal rgeos sp spdep splancs]; }; pglm = derive2 { name="pglm"; version="0.1-2"; sha256="1arn2gf0bkg0s59a96hyhrm7adw66d33qs2al2s0ghln6fyk8674"; depends=[maxLik plm statmod]; }; pgmm = derive2 { name="pgmm"; version="1.2"; sha256="0f0wdcirjyxzg2139c055i035qzmhm01yvf97nrhp69h4hpynb2n"; depends=[]; }; pgnorm = derive2 { name="pgnorm"; version="2.0"; sha256="1k9z7pvmranr8m62v7amc0pj6lwzh3wqi79gg3mflifn1mr6c057"; depends=[]; }; + pgraph = derive2 { name="pgraph"; version="0.8"; sha256="1r784snci5m81qljfh1r3w8qzszmy0476zvsd1alh43afzg9zpr5"; depends=[energy glasso glmnet SAM]; }; pgs = derive2 { name="pgs"; version="0.4-0"; sha256="1zf5sjn662sds3h06zk5p4g71qnpwp5yhw1dkjzs1rs48pxmagrx"; depends=[gsl R2Cuba]; }; ph2bayes = derive2 { name="ph2bayes"; version="0.0.1"; sha256="09ns3i5dgbn8573g4sism6d3y8jp26icy21l8d8px91jfhlx7kxv"; depends=[Rcpp]; }; + ph2bye = derive2 { name="ph2bye"; version="0.1.4"; sha256="0h5d8d4bagkp6g0nb67cb225ki5p1amnclnfj6afgdcsli5clr67"; depends=[animation nleqslv Rcpp VGAM]; }; + ph2mult = derive2 { name="ph2mult"; version="0.1.1"; sha256="0w3w18fkr9xzv6mpb00cz5id33zgsnl6s8zgjpchzvrhmpjpp437"; depends=[clinfun]; }; phalen = derive2 { name="phalen"; version="1.0"; sha256="0awj9a48dy0azkhqkkzf82q75hrsb2yw6dgbsvlsb0a71g4wyhlr"; depends=[sqldf]; }; - phangorn = derive2 { name="phangorn"; version="2.0.2"; sha256="1ywyd5ljkm7b8qfis2d7nzz4q04b0pfkscwf6vmbb31cziks2d1j"; depends=[ape igraph Matrix nnls quadprog]; }; + phangorn = derive2 { name="phangorn"; version="2.1.1"; sha256="1klc2s6crwmg30psgf1xkchyjqbksl7cdlnk3b0ypdw7pd3js5im"; depends=[ape fastmatch igraph magrittr Matrix quadprog Rcpp]; }; phaseR = derive2 { name="phaseR"; version="1.3"; sha256="1hwclb7lys00vc260y3z9428b5dgm7zq474i8yg0w07rxqriaq2h"; depends=[deSolve]; }; phcfM = derive2 { name="phcfM"; version="1.2"; sha256="0i1vr8rmq5zs34syz2vvy8c9603ifzr9s5v2izh1fh8xhzg7655x"; depends=[coda]; }; pheatmap = derive2 { name="pheatmap"; version="1.0.8"; sha256="1ik0k69kb4n7xl3bkx4p09kw08ri93855zcsxq1c668171jqfiji"; depends=[gtable RColorBrewer scales]; }; @@ -6155,115 +7678,154 @@ in with self; { phenmod = derive2 { name="phenmod"; version="1.2-3"; sha256="0dxwx8c7zka29fq7svrvn8bghj8jh8grbrgsw4pvavx2439cldak"; depends=[gstat lattice pheno RColorBrewer]; }; pheno = derive2 { name="pheno"; version="1.6"; sha256="0xdya1g1ap7h12c6zn3apbkxr725rjhcp4gbdchkvcnwz4y9vw8c"; depends=[nlme quantreg SparseM]; }; pheno2geno = derive2 { name="pheno2geno"; version="1.3.1"; sha256="1k1hw5qxrwxy502zkcfcz0nxjqmvdk1fgghjc512vq7x5znblz3v"; depends=[mixtools qtl VGAM]; }; - phenology = derive2 { name="phenology"; version="4.2.4"; sha256="1074sr1p3bjz4f2zsswp5m60qs7axp9ngsk1l76gi2zpv95xay6s"; depends=[coda fields HelpersMG shiny zoo]; }; + phenology = derive2 { name="phenology"; version="5.3"; sha256="1lw4blnv06w0czliqwpz34nz7nanfihcv04l72sxma7jjmjpn4w8"; depends=[coda fields HelpersMG zoo]; }; phia = derive2 { name="phia"; version="0.2-1"; sha256="0rv2akl5a488vax4sd9wnx765mch4vvcmg3iyxyljzl5kpqh5r00"; depends=[car Matrix]; }; phmm = derive2 { name="phmm"; version="0.7-5"; sha256="0dil0ha199yh85j1skwfdl0v02vxdmb0xcc1jdbayjr5jrn9m1zk"; depends=[lattice Matrix survival]; }; - phonR = derive2 { name="phonR"; version="1.0-3"; sha256="09wzsq92jkxy6cd89czshpj1hsp56v9jbgqr5a06rm6bv3spa31i"; depends=[deldir plotrix splancs]; }; + phonR = derive2 { name="phonR"; version="1.0-7"; sha256="0al2cbynnbvmd90lk1w1g1ppslqq0ng8vbb6bl7m4kqwd2lgv056"; depends=[deldir plotrix splancs]; }; phonTools = derive2 { name="phonTools"; version="0.2-2.1"; sha256="01i481mhswsys3gpasw9gn6nxkfmi7bz46g5c84m13pg0cv8hxc7"; depends=[]; }; phonenumber = derive2 { name="phonenumber"; version="0.2.2"; sha256="1m5idp538lvynmfp8m7l89js6hk5lpp26k419bdvj3hd3ap0n9lg"; depends=[]; }; - phonics = derive2 { name="phonics"; version="0.6.3"; sha256="12ysjbpap9nkgg1kybgxq3f4qc54qpiqzf1dj4izmkgagqxms5xy"; depends=[BH Rcpp]; }; - photobiology = derive2 { name="photobiology"; version="0.9.5"; sha256="1fdpn9r1mg0l6ckw73ihh6gl8z6vswxqidb6fk76kvb5c1saldlq"; depends=[caTools dplyr lubridate plyr splus2R]; }; - photobiologyWavebands = derive2 { name="photobiologyWavebands"; version="0.4.0"; sha256="038rsszxvja5kcm87w5vpk1hwcl6r68lyv15w1w449xcphb3c4ky"; depends=[photobiology]; }; - phreeqc = derive2 { name="phreeqc"; version="3.3.1"; sha256="0jzzzmijlmrwmpv9xfj9lq9kppxgk6hmfbp90wj2bpnhyyhkchqi"; depends=[]; }; + phonics = derive2 { name="phonics"; version="0.7.4"; sha256="0s5v9w3dcscjc7snv4nlhd4zm2dhxwv9jp6xaxp5wpwys5mim1ms"; depends=[BH Rcpp]; }; + photobiology = derive2 { name="photobiology"; version="0.9.13"; sha256="14pziwhg87gbzc3yjhb5kvbcfd8v6mqa4r8l83nnxp2gkr0kl66s"; depends=[caTools dplyr lubridate plyr polynom splus2R tibble]; }; + photobiologyInOut = derive2 { name="photobiologyInOut"; version="0.4.12"; sha256="02pfajd9wzbrlxsk29d5sdp2bnzjdw1g08rrl5742c6ha4dll81m"; depends=[colorSpec dplyr hyperSpec lazyeval lubridate pavo photobiology readr readxl reshape2 tibble]; }; + photobiologyLEDs = derive2 { name="photobiologyLEDs"; version="0.4.2"; sha256="0m8bwpvr3g0xdcpjg0pm5qp7b941y85gdzw24vc1nhfmzwd0lxn0"; depends=[photobiology]; }; + photobiologyLamps = derive2 { name="photobiologyLamps"; version="0.4.1"; sha256="19pzb12qisv5hy7rps0dp9bq8zanpyr2yn41i6rd8hk80fknjha6"; depends=[photobiology]; }; + photobiologyPlants = derive2 { name="photobiologyPlants"; version="0.4.0"; sha256="1qdd2zbkdw601p5zcamd2ly0qp0hmnd32bdlnvpv96v90iwxpj9q"; depends=[photobiology photobiologyWavebands]; }; + photobiologyWavebands = derive2 { name="photobiologyWavebands"; version="0.4.1"; sha256="07a2hw59k1a2knccijy82pb0f72y00s2wlc70b6snrgii45qgc23"; depends=[photobiology]; }; + phrasemachine = derive2 { name="phrasemachine"; version="1.0.0"; sha256="0jdz8imcry78shhbayhw7vpcx3kj8sfin3jl4fz5bb1ncdpcrpbj"; depends=[NLP openNLP quanteda stringr]; }; + phreeqc = derive2 { name="phreeqc"; version="3.3.10"; sha256="0hcdjj1wgfknqf5yx50b9vz5f72siw4dslyvk2xbrfnwbzzz4qib"; depends=[]; }; phtt = derive2 { name="phtt"; version="3.1.2"; sha256="1fvvx5jilq5dlgh3qlfsjxr8jizy4k34a1g3lknfkmvn713ycp7v"; depends=[pspline]; }; - phyclust = derive2 { name="phyclust"; version="0.1-16"; sha256="19i5cpiss2k94zg03m00j9yc7zr0xsx3c8v8b7hkgv0kf9p40vjn"; depends=[ape]; }; + phuassess = derive2 { name="phuassess"; version="1.1"; sha256="0jplj9gih32dllx2hw5aqvc9b94sbrbv66s3a5r8mdbpjh93rhng"; depends=[]; }; + phybreak = derive2 { name="phybreak"; version="0.1.1"; sha256="14dn5q4knqb1ijbspnvyggdjrplbhxmyqj5jix8a74bk01xwl9nj"; depends=[ape phangorn Rcpp]; }; + phyclust = derive2 { name="phyclust"; version="0.1-18"; sha256="1avw6vx3fmzvk8iwc47jz014hxjn0mm8b941a9y1xyip11x0b6dd"; depends=[ape]; }; phyext2 = derive2 { name="phyext2"; version="0.0.4"; sha256="0j871kgqm9fll0vdgh071z77ib51y8pxxm0ssjszljvvpx1mb8rb"; depends=[ape phylobase]; }; phylin = derive2 { name="phylin"; version="1.1.1"; sha256="1hxmh5jgcz41bhmi8kvimw0b6m4p3yq85bh79hl7xbx2kshxmvzq"; depends=[]; }; + phyloTop = derive2 { name="phyloTop"; version="2.0.0"; sha256="14bsmq62afkzcnacjd8464krk5hnh1s54r6znlknnpyphy0g8xzk"; depends=[ape igraph NHPoisson phylobase]; }; phylobase = derive2 { name="phylobase"; version="0.8.2"; sha256="0wspm8fv2lps2z6zhz3qrf3icad1mgpq4379gmbi3i614h25r5gp"; depends=[ade4 ape Rcpp rncl RNeXML]; }; + phylocanvas = derive2 { name="phylocanvas"; version="0.1.0"; sha256="0h5cp37f2jzi30zpzyvd6h16592knkyp2jnvcdhhi37yhamzhgr6"; depends=[ape htmlwidgets magrittr phylobase]; }; phyloclim = derive2 { name="phyloclim"; version="0.9-4"; sha256="0ngg8x192lrhd75rr6qbh72pqijbrhrpizl27q0vr6hp7n9ch3zx"; depends=[ape raster]; }; - phylocurve = derive2 { name="phylocurve"; version="2.0.2"; sha256="0wbsl3mcrjjbq0aihnam2raxmk1895x5wy4x0jnzic4mpxfjwnnd"; depends=[ape doParallel doSNOW drc dtw foreach geiger geomorph GPfit Matrix mvnmle phylolm phytools Rcpp RcppArmadillo rgl]; }; + phylocurve = derive2 { name="phylocurve"; version="2.0.7"; sha256="0nffrhydz6jykph75nqciphsz3y8a5fq2hr1plbcl0lbfc60yjzx"; depends=[ape doParallel drc dtw foreach geiger geomorph GPfit Matrix mvnmle phylolm phytools Rcpp RcppArmadillo rgl]; }; phyloland = derive2 { name="phyloland"; version="1.3"; sha256="10g40m6n2s4qvnzlqcwpy3k0j7bxdp79f586jj910b8p00ymrksp"; depends=[ape]; }; - phylolm = derive2 { name="phylolm"; version="2.4"; sha256="0smgdfqb0kg3ka6g5azshlw1ig1djk9j01pc7hqzf6rymy9wkxxg"; depends=[ape]; }; + phylolm = derive2 { name="phylolm"; version="2.5"; sha256="0bffqzba6kcv8jyya7pja10mjnklhihczljhmj8q0pdrmd6qgqp8"; depends=[ape]; }; phylometrics = derive2 { name="phylometrics"; version="0.0.1"; sha256="1pmr6l3wmaf91wdlsc5m63l07fibngnly2qzkma0rdi463ii03il"; depends=[mvtnorm]; }; + phylopath = derive2 { name="phylopath"; version="0.2.2"; sha256="16r3m1bsfsfjvzl9k8ss197m1hvghlm62fwdrrm9zk6jc4fjc0cf"; depends=[ape DiagrammeR dplyr ggm ggplot2 igraph MuMIn nlme pbapply purrr tibble tidyr]; }; phylosignal = derive2 { name="phylosignal"; version="1.1"; sha256="039sdb5cyijsrvj13xznr0j7vcp780lif62xk5x5hpzxvpg1wwgk"; depends=[adephylo ape boot igraph phylobase Rcpp RcppArmadillo RCurl]; }; + phylosim = derive2 { name="phylosim"; version="3.0.2"; sha256="148zm43cgdhr264ffcabjx4abykks07jix6lypqysqy25fbmdngk"; depends=[ape compoisson ggplot2 R_methodsS3 R_oo]; }; + phylotate = derive2 { name="phylotate"; version="1.0"; sha256="0mpqxydz4xh7vf54szi11ckqzfmhaiwz9h8v3y1kslvarn8bvpr4"; depends=[]; }; phylotools = derive2 { name="phylotools"; version="0.1.2"; sha256="19w7xzk6sk1g9br7vwv338nvszzh0lk5rdzf0khiywka31bbsjyb"; depends=[ape fields picante seqRFLP spaa]; }; phyndr = derive2 { name="phyndr"; version="0.1.0"; sha256="03y3j4ik6flrksqm2dwh2cihn12hzfdik0fsak4zbxjdzaqn5gim"; depends=[ape]; }; phyreg = derive2 { name="phyreg"; version="0.7"; sha256="0saynhq4yvd4x2xaljcsfmqk7da2jq3jqk26fm9qivg900z4kf35"; depends=[]; }; physiology = derive2 { name="physiology"; version="0.2.2"; sha256="0z394smbnmlrnp9ms5vjczc3avrcn5nxm8np5y58k86x470w6npz"; depends=[]; }; - phytools = derive2 { name="phytools"; version="0.5-20"; sha256="1k43pf04mb1lsj5vhbj1rx4jadanrdsxfbl2j57wvxswk6fxihpz"; depends=[animation ape clusterGeneration maps mnormt msm numDeriv phangorn plotrix scatterplot3d]; }; + phytools = derive2 { name="phytools"; version="0.5-64"; sha256="0vamljghwxrdgncwzg0217cw65f0gzn0bx72xxlmdw69wshhrj3m"; depends=[animation ape clusterGeneration coda combinat maps mnormt msm numDeriv phangorn plotrix scatterplot3d]; }; phytotools = derive2 { name="phytotools"; version="1.0"; sha256="049znviv2vvzv23biy1l28axm7bc7biwmq4bnn0cnjqgkk48ysz3"; depends=[FME insol]; }; pi0 = derive2 { name="pi0"; version="1.4-0"; sha256="0qwyfan21k23q4dilnl7hqjghzm8n2qfw21wbvnidr6n9hf2fjjs"; depends=[Iso kernlab limSolve LowRankQP Matrix numDeriv quadprog qvalue rgl scatterplot3d]; }; picante = derive2 { name="picante"; version="1.6-2"; sha256="1zxpd8kh3ay6f3gdqkij1a6vnkr98dc1jib2r6br2kjyzshabcsd"; depends=[ape nlme vegan]; }; - picasso = derive2 { name="picasso"; version="0.5.0"; sha256="1m9fjpg6nx0c8fnh0m5g29gfrnprhzgzx5162r9sjf8i1xspawn4"; depends=[igraph lattice MASS Matrix]; }; + picasso = derive2 { name="picasso"; version="0.5.4"; sha256="0y6d0wmgv4nhyxyp0nz2hmfwvm4laagr1jzvngw3h4na1sw10l6i"; depends=[igraph lattice MASS Matrix]; }; pid = derive2 { name="pid"; version="0.36"; sha256="1w6h09ddq8rv7k5xl4v6nhlkm0vnmim57mg0dzk2dv9dc4v8i141"; depends=[DoE_base FrF2 ggplot2 png]; }; - piecewiseSEM = derive2 { name="piecewiseSEM"; version="1.1"; sha256="09x0nb6qbpikaxn2n7dq71dk25miv6rq96kpm24927l72dgx82gj"; depends=[ggm lavaan lme4 nlme]; }; - pinfsc50 = derive2 { name="pinfsc50"; version="1.0.0"; sha256="15zliybiw6mwyvcyi3n55jn996h2yl6j2m02yfns72g8p6sg89gk"; depends=[]; }; + piecewiseSEM = derive2 { name="piecewiseSEM"; version="1.2.1"; sha256="0c705ngyj2pf24vvqdld5rnf875pw64gs64l9f7nylbfrax39kbv"; depends=[lavaan lme4 nlme pbkrtest]; }; + pim = derive2 { name="pim"; version="2.0.0.2"; sha256="1fjnll2lfgdfak9427rh343y80awjzwpy46v33kpd6niz41zmra8"; depends=[BB nleqslv]; }; + pinbasic = derive2 { name="pinbasic"; version="1.0.1"; sha256="16sja6f8ivixrqj83xjgfxrvql6rzhkr0kd9li9spzhs20r4yshl"; depends=[doParallel fastcluster foreach ggplot2 iterators lubridate reshape2 scales]; }; + pinfsc50 = derive2 { name="pinfsc50"; version="1.1.0"; sha256="1fja8xdqwsm4g223wmb2yg5fqmsg94hchzjd4qrqah1zb8vbdfdn"; depends=[]; }; pingr = derive2 { name="pingr"; version="1.1.0"; sha256="0j03qcsyckv3zh2v4m8wz8kyfl0k8qi71rm20rc0spy1s9ng7fcb"; depends=[]; }; - pinnacle_API = derive2 { name="pinnacle.API"; version="1.90"; sha256="10fpb7zsl22y61dsgxh2yphf5yn5b2dv42xd441q53xbpxsdhw7f"; depends=[dplyr httr jsonlite RCurl rjson uuid XML]; }; - pipe_design = derive2 { name="pipe.design"; version="0.3"; sha256="1idgy7s6fnydcda51yj1rjil2pd1r2y6g0m5dmn8sw7wmaq2n3h6"; depends=[ggplot2 gtools]; }; - pipeR = derive2 { name="pipeR"; version="0.6.0.6"; sha256="1d7vmccvh5ir26cv26mk0ay69rqmwmp0mgwjal9avfn9vrxq1fq3"; depends=[]; }; + pinnacle_API = derive2 { name="pinnacle.API"; version="1.92"; sha256="1a2s33sizg9q6iml56hbbs1c7hx5lz7v7hplhs0nv05vrh8cg9zm"; depends=[dplyr httr jsonlite RCurl rjson uuid XML]; }; + pipe_design = derive2 { name="pipe.design"; version="0.4"; sha256="00znnjqvppvn0qmrxkksiljgd51mf1x5zkmib43myckzwp5cap3i"; depends=[ggplot2 gtools xtable]; }; + pipeGS = derive2 { name="pipeGS"; version="0.1"; sha256="0ixfj52nd9785ny78wgsyq7srygsj3yg3p95pcb4lrrammchqygk"; depends=[]; }; + pipeR = derive2 { name="pipeR"; version="0.6.1.3"; sha256="16lj227x24pviqb4dcrj7a55l31p5mm0cbwsb6m3y3n6k5wcd2nh"; depends=[]; }; + pipefittr = derive2 { name="pipefittr"; version="0.1.2"; sha256="0pzd7f0rhn0rydncki666zlajdwyiay3apa17cb0xy5454d99mvh"; depends=[magrittr miniUI rstudioapi shiny stringr]; }; + pipeliner = derive2 { name="pipeliner"; version="0.1.1"; sha256="1cyyd1bin89dh0zrhic3i541bj8nnaphg6jq2jqkhnxn2nvax11g"; depends=[]; }; + pirate = derive2 { name="pirate"; version="1.0.0"; sha256="160mmyqdwbc4g7n7q9i4xcqp6h9bcpcz7vavsgdcpvs2mjfhfpjx"; depends=[ggplot2 MASS plyr Rcpp RcppArmadillo]; }; pitchRx = derive2 { name="pitchRx"; version="1.8.2"; sha256="0lg0xab40r8wzrww986l5q9jkg1m83g4bhsbh0kr7f2rv90av662"; depends=[ggplot2 hexbin MASS mgcv plyr XML2R]; }; - pixiedust = derive2 { name="pixiedust"; version="0.6.1"; sha256="170550dsmc1c5qk288d6qw9xhxn415fgncyf4gqdsl6b5h632c11"; depends=[ArgumentCheck broom dplyr Hmisc htmltools knitr lazyWeave magrittr stringr tidyr]; }; + pixiedust = derive2 { name="pixiedust"; version="0.7.4"; sha256="1v4biqbs18x7a8li85zqk8pwd4bxirvda6nrws8pyz0g77j74nj4"; depends=[broom checkmate dplyr Hmisc htmltools knitr lazyWeave magrittr stringr tidyr]; }; pixmap = derive2 { name="pixmap"; version="0.4-11"; sha256="04klxp6jndw1bp6z40v20fbmdmdpfca2g0czmmmgbkark9s1183g"; depends=[]; }; - pkgKitten = derive2 { name="pkgKitten"; version="0.1.3"; sha256="1f7jkriib1f19mc5mdrymg5xzdcyclfvh1220agy4lpyprxgza0f"; depends=[]; }; + pkgKitten = derive2 { name="pkgKitten"; version="0.1.4"; sha256="0c44zrvpyz87s5mjhsqdrkyrvyzhyldnq371bwnn9crbpbac3wnd"; depends=[]; }; pkgconfig = derive2 { name="pkgconfig"; version="2.0.0"; sha256="1wdi86qyaxq1mwkr3nrax3ab7hhj2gp1lbsyqnbcc9vzg230nh0r"; depends=[]; }; + pkgcopier = derive2 { name="pkgcopier"; version="0.0.1"; sha256="04vpjf8nvqnpry54f1wwrnmipd5m6gqd89c3vkryqx88jk85jd8s"; depends=[httr stringr]; }; pkgmaker = derive2 { name="pkgmaker"; version="0.22"; sha256="0vrqnd3kg6liqvpbd969jjsdx0f0rvmmxgdbwwrp6xfmdg0pib8r"; depends=[codetools digest registry stringr xtable]; }; - pks = derive2 { name="pks"; version="0.3-1"; sha256="1nr36k960yv71yfxkzchjk814sf921hdiiakxvv5f9dxpf00hxp4"; depends=[sets]; }; + pkmon = derive2 { name="pkmon"; version="0.9"; sha256="1zcjz1h45qv81rwnjsgc9iwmrwpnsy917y7h66pz98wzszlxcsd2"; depends=[]; }; + pks = derive2 { name="pks"; version="0.4-0"; sha256="0fx7p2d83x0ip65aqp9dga59d9cggam8k79mi0drk5birzchqbcr"; depends=[sets]; }; plRasch = derive2 { name="plRasch"; version="1.0"; sha256="1rnpvxw6pzl5f6zp4xl2wfndgvqz5l3kiv9sh4cpvhga0gl8zjaw"; depends=[survival]; }; pla = derive2 { name="pla"; version="0.2"; sha256="1qb71zjcxvs3zbfy0sryyxizwix0nw530zsfw661a8vm8sk054kw"; depends=[]; }; + plac = derive2 { name="plac"; version="0.1.1"; sha256="08kqnjzbfygnbqvqg5wyw148kfhjqxy46y4vaiq9zzwzj58w8vzn"; depends=[Rcpp RcppEigen survival]; }; + placement = derive2 { name="placement"; version="0.1.1"; sha256="1narjb90sb5prvzfv2x30bz8y9aq8hqggza91ghwi47m99vm1dg6"; depends=[base64enc digest jsonlite RCurl stringi urltools]; }; plan = derive2 { name="plan"; version="0.4-2"; sha256="0vwiv8gcjdbnsxd8zqf0j1yh6gvbzm0b5kr7m47ha9z64d7wxch6"; depends=[]; }; planar = derive2 { name="planar"; version="1.6"; sha256="0x5xdb2afpc1w8s217hy765mz938kg5b5j7vzqzhlsh2dzdjccpj"; depends=[cubature dielectric ggplot2 plyr Rcpp RcppArmadillo reshape2 statmod]; }; - planor = derive2 { name="planor"; version="0.2-4"; sha256="0k5rhrnv2spsj2a94msgw03yyv0hzrf8kvlnbhfj1dl7sb1l92a1"; depends=[conf_design]; }; - plantecophys = derive2 { name="plantecophys"; version="1.0-2"; sha256="1lb5jzigwabqdcb11chlkv4xdbazlnda70scj49x13hmgk7j8lz5"; depends=[]; }; - plaqr = derive2 { name="plaqr"; version="1.0"; sha256="1vv15zqnmir5hi9ivyifzrc1rkn1sn5qj61by66iczmlmhqh17h8"; depends=[quantreg]; }; + planor = derive2 { name="planor"; version="1.0-1"; sha256="1wi1s41wwk4zi5sqzm5flaphrpffqv8bhsgzdpknmnhp1nn0hllv"; depends=[conf_design]; }; + plantecophys = derive2 { name="plantecophys"; version="1.1-8"; sha256="02425j4pgwqadg2zn7vyl4741panif236m89zm36p580chp23wir"; depends=[]; }; + plaqr = derive2 { name="plaqr"; version="1.1"; sha256="0hkzfxph2lacrd4npqvf4pyaldr1z56hlfbj3gi7qjlflxqnv3xp"; depends=[quantreg]; }; + plater = derive2 { name="plater"; version="1.0.0"; sha256="0nbkfqrz78zgf06lsfzmwj50lfbq3dvi01j4rlbb6dwamx2cn3sf"; depends=[dplyr]; }; + platetools = derive2 { name="platetools"; version="0.0.2"; sha256="0xan3h3djhgjbqn8f7yzlkm25l0fzq86zhb5xwfib4yajnb2dspa"; depends=[dplyr ggplot2 plyr RColorBrewer]; }; playwith = derive2 { name="playwith"; version="0.9-54"; sha256="1zmm8sskchim3ba3l0zqfvxnrqfmiv94a8l6slcf3if3cf9kkzal"; depends=[cairoDevice gridBase gWidgets gWidgetsRGtk2 lattice RGtk2]; }; - plfMA = derive2 { name="plfMA"; version="1.0.2"; sha256="0ji3070hwyiqikpmlw7pn16mbfpgqpn6mgf4836r0vk6j3bd3fd0"; depends=[cairoDevice gWidgets gWidgetsRGtk2 limma]; }; + pleiades = derive2 { name="pleiades"; version="0.1.0"; sha256="0y7y6c4605nx70xabwfqzmz7piqmvczzcf56y8skvr7qpx7iwhbp"; depends=[crul dplyr gistr jsonlite rappdirs RSQLite]; }; + pleio = derive2 { name="pleio"; version="1.1"; sha256="01w1z5m65z0wrlsdbs7jc9l5sp73jr55xwqdaqp76cf6kvbd6yb8"; depends=[Matrix]; }; + plfMA = derive2 { name="plfMA"; version="1.0.3"; sha256="10cb12kxzh9ymzk59d310wqn213d8syp8a4rd5ayzkp9wlf3lksn"; depends=[cairoDevice gWidgets gWidgetsRGtk2 limma]; }; plfm = derive2 { name="plfm"; version="2.1"; sha256="19l5n7syp6xcj4d5qxccsard70d5q8ph1f87prj2zgpq5spyp7an"; depends=[abind sfsmisc]; }; plgp = derive2 { name="plgp"; version="1.1-7"; sha256="02g6saabrsd8pra0szbwcbilf6w5ywg2gxqb5zdvbxds2vw36hn0"; depends=[mvtnorm tgp]; }; - plm = derive2 { name="plm"; version="1.5-12"; sha256="0zsdm0d6vvyliz7k3l2b8xzp1qp8yahibczzhnrmm9py6sp8m7jz"; depends=[bdsmatrix car Formula lattice lmtest MASS nlme sandwich zoo]; }; + plm = derive2 { name="plm"; version="1.6-5"; sha256="00zipzxg1d8w6ih586hlqv6bkyn5d01ppik8z35by3r1q6rlkpx2"; depends=[bdsmatrix car Formula lattice lmtest MASS nlme sandwich zoo]; }; plmDE = derive2 { name="plmDE"; version="1.0"; sha256="19xxi0zzpxcrsdrbs0hiwqgnv2aaw1q3mi586wv27zz6lfqcr9lr"; depends=[limma MASS R_oo]; }; plmm = derive2 { name="plmm"; version="0.1-1"; sha256="1dfxd1mqqjy2mf7qc6mh4wx5ya9q8fkqgrf01apisb66xxx5zya7"; depends=[Formula nlme sm]; }; pln = derive2 { name="pln"; version="0.2-1"; sha256="09zg7zwmmqpjr1j59lqsjf4blrkya9wfwddgzfm9rr5jxrzvqcv8"; depends=[]; }; + plogr = derive2 { name="plogr"; version="0.1-1"; sha256="13zliqlbkl8b04k9ga0sx5jsh7k867gracgl84l2a9kcqy9mqx92"; depends=[]; }; plot3D = derive2 { name="plot3D"; version="1.1"; sha256="1xy4h9k1ddz040ns7dfqqckkmb165f2h4xfz44h8lfwazr59dzgg"; depends=[misc3d]; }; + plot3Drgl = derive2 { name="plot3Drgl"; version="1.0.1"; sha256="12p4qc9vmhr86ssx6xnz3cmx84q5jgd28bw9dp4wjrn04n6l4va6"; depends=[plot3D rgl]; }; plotGoogleMaps = derive2 { name="plotGoogleMaps"; version="2.2"; sha256="0qv57k46ncg0wrgma0sbr3xf0j9j8cii3ppk3gs65ardghs3bf6b"; depends=[lattice maptools raster rgdal sp spacetime]; }; - plotKML = derive2 { name="plotKML"; version="0.5-5"; sha256="15gdn2dq6jy6rd1xiahqnkg7l7j033906vg5qp8myjxqmlcqk7h4"; depends=[aqp classInt colorRamps colorspace dismo gstat pixmap plotrix plyr raster RColorBrewer rgdal RSAGA scales sp spacetime stringr XML zoo]; }; + plotKML = derive2 { name="plotKML"; version="0.5-6"; sha256="091zzk30bsdxqzfh2p3xvk6fhijcw1143ccrkyd5srp8vc97bxhz"; depends=[aqp classInt colorRamps colorspace dismo gstat pixmap plotrix plyr raster RColorBrewer rgdal RSAGA scales sp spacetime stringr XML zoo]; }; plotMCMC = derive2 { name="plotMCMC"; version="2.0-0"; sha256="0i4kcx6cpqjd6i16w3i8s34siw44qigca2jbk98b9ligbi65qnqb"; depends=[coda gplots lattice]; }; + plotMElm = derive2 { name="plotMElm"; version="0.1.4"; sha256="17fif2rqsf4f9jr4s7nr7wikwg63nibz6yjkldf7yh1qqqfikd2g"; depends=[ggplot2 interactionTest]; }; plotROC = derive2 { name="plotROC"; version="2.0.1"; sha256="1r80712svlm8kfbnymv27wrn60bckxnmq1rva3caln5b58swzcdk"; depends=[ggplot2 gridSVG plyr shiny]; }; - plotSEMM = derive2 { name="plotSEMM"; version="2.1"; sha256="0xpq8h7xm9p25wcfp9av0vwz4hdm4ibrwy68pff8fdf7bb1fy49w"; depends=[MplusAutomation plotrix plyr Rcpp shiny]; }; - plotly = derive2 { name="plotly"; version="3.4.1"; sha256="0krx2gnji6fr5gw46yva1dir32z2m50qlnh7h6mhs7w89cbfqwvp"; depends=[base64enc digest ggplot2 htmlwidgets httr jsonlite magrittr plyr scales tidyr viridis]; }; - plotmo = derive2 { name="plotmo"; version="3.1.4"; sha256="0b12w6sg317vgmhyn4gh9jcnyps1pyqnh5ai15y1dfajsf2zjhca"; depends=[plotrix TeachingDemos]; }; + plotSEMM = derive2 { name="plotSEMM"; version="2.2"; sha256="08px2ng2lxhfkjmr6w26rxqzpqa18adjn59g14c29jqzx6s2m5h2"; depends=[MplusAutomation plotrix plyr Rcpp shiny]; }; + plotfunctions = derive2 { name="plotfunctions"; version="1.0"; sha256="16q5qzfkia4lhmx8wkajxcj6vn9nb6388fi8mr33g2n2pv721yax"; depends=[]; }; + plotluck = derive2 { name="plotluck"; version="1.1.0"; sha256="0arbvldg50lyn98vkrys1yjkkraz8jracwal4r2mlw991pnaikpp"; depends=[ggplot2 hexbin Hmisc plyr quantreg RColorBrewer scales]; }; + plotly = derive2 { name="plotly"; version="4.5.6"; sha256="09yw977yxlcxv57kni3q899zrxyxa6pznr06cylr9lqkyr7llfhx"; depends=[base64enc digest dplyr ggplot2 hexbin htmlwidgets httr jsonlite lazyeval magrittr purrr scales tibble tidyr viridisLite]; }; + plotmo = derive2 { name="plotmo"; version="3.3.2"; sha256="030ba2c1g61a9wd4994pk8c32amj23ar7vghynkqz6ppb2nfzx8i"; depends=[plotrix TeachingDemos]; }; plotpc = derive2 { name="plotpc"; version="1.0.4"; sha256="1sf7n7mfyaijldm24bc8r8pfm8pp9cyaja7am14z2wpj2j9f9vyq"; depends=[]; }; - plotrix = derive2 { name="plotrix"; version="3.6-1"; sha256="1y8xnlpy4zba70af9lwj2sshvfdfcmfdh92wamyzj8z9gciailfr"; depends=[]; }; - pls = derive2 { name="pls"; version="2.5-0"; sha256="135pqb6frjldv86fs00p2mgrc9vjna3jvns3slj5a300drajja1w"; depends=[]; }; + plotrix = derive2 { name="plotrix"; version="3.6-4"; sha256="1wxzjnzvkl3aga51ad2xhv4s7v46kvnp4z0nz4cb9cn10057sfw8"; depends=[]; }; + plotrr = derive2 { name="plotrr"; version="0.2.0"; sha256="12kab7w32hcdqmwh3nfpk1zqkgnvpx3p0292w47643ahl26s9whj"; depends=[dplyr ggplot2]; }; + plotwidgets = derive2 { name="plotwidgets"; version="0.4"; sha256="1w7c9grw4pyyra230196yq32snr4wdg6xi8vh4dx5df2v500wz22"; depends=[]; }; + pls = derive2 { name="pls"; version="2.6-0"; sha256="15j59p5x0rkdrk7iqzkipsy50rsyjl31w8zxc4w3v1j5gzxhi1rx"; depends=[]; }; plsRbeta = derive2 { name="plsRbeta"; version="0.2.0"; sha256="1b8yldz5nzw3gilv9wk79bxcqb0hrgsxi2cn6qlby5nf9b4zmzv8"; depends=[betareg boot Formula MASS mvtnorm plsdof plsRglm]; }; plsRcox = derive2 { name="plsRcox"; version="1.7.2"; sha256="1c3ll13m27ndwlc9r79ilzl0i6cyp870x66swlbg6387whf7wn2r"; depends=[kernlab lars mixOmics pls plsRglm risksetROC rms survAUC survcomp survival]; }; plsRglm = derive2 { name="plsRglm"; version="1.1.1"; sha256="1bx1pl1pv47z3yj3ngkd97j10v2h8jqiybcqbm3kvqhgqydm07rp"; depends=[bipartite boot car mvtnorm]; }; + plsVarSel = derive2 { name="plsVarSel"; version="0.9.1"; sha256="0jwhdcrr68562q83528h7x3kjadfzn6j5l02axyfvflzgdnxwcnc"; depends=[bdsmatrix genalg MASS mvtnorm pls progress]; }; plsdepot = derive2 { name="plsdepot"; version="0.1.17"; sha256="1i00wxr451xpfy6dnvcm11aqf9106jsh5hj7gpds22ysgm4iq5w4"; depends=[]; }; plsdof = derive2 { name="plsdof"; version="0.2-7"; sha256="1z8z9m0nsnyy1fipzvm1srpxn3q6wjrlivmmki1f8plwkixkyc5y"; depends=[MASS]; }; plsgenomics = derive2 { name="plsgenomics"; version="1.3-1"; sha256="0vddhzqfix8q692mdls227m2l6zjzbjwp1ia5j9shy71ycg2fzn9"; depends=[boot MASS]; }; plspm = derive2 { name="plspm"; version="0.4.7"; sha256="0iy4qw4zjgqxg93a827qjcm32yipmnrl4gzn4hmskjd4khm9ngwd"; depends=[amap diagram shape tester turner]; }; plspm_formula = derive2 { name="plspm.formula"; version="1.0.1"; sha256="1i2d1q8pz21js1ci8afnqzcky430hh1iwf5f6jr3j9yr9gs365k5"; depends=[plspm]; }; + plspolychaos = derive2 { name="plspolychaos"; version="1.1-0"; sha256="1qq0f95ndpiykbizyivjcbjbbmqqns08i1dkjn3n7k2r9130z8rx"; depends=[lhs MASS]; }; plugdensity = derive2 { name="plugdensity"; version="0.8-3"; sha256="1jdmq4kbs8yzgkf9f5dc7c8c52ia68fgavw7nsnc2hnz5ylw1qy9"; depends=[]; }; + plumber = derive2 { name="plumber"; version="0.3.1"; sha256="0li34ldwc8qi7jg37pqaa4b5ql6ybci9a3wh2a48gb8nyb380r2b"; depends=[httpuv jsonlite R6 stringi]; }; plumbr = derive2 { name="plumbr"; version="0.6.9"; sha256="1avbclblqfy57pd72ximvj3zq92q1w8vszvyf6fw75j5rfwdaibk"; depends=[objectSignals]; }; plus = derive2 { name="plus"; version="1.0"; sha256="1l7lvnq7vahj8m7knmr4q3wj00ar7iq89j45a2dqn2bh0qyj68ls"; depends=[]; }; plusser = derive2 { name="plusser"; version="0.4-0"; sha256="1g100dh8cvn9q09j0jbkw4xmwjdp1lm4651369975fm99nrlp1j9"; depends=[lubridate plyr RCurl RJSONIO]; }; - plyr = derive2 { name="plyr"; version="1.8.3"; sha256="06v4zxawpjz37rp2q2ii5q43g664z9s29j4ydn0cz3crn7lzl6pk"; depends=[Rcpp]; }; - pmc = derive2 { name="pmc"; version="1.0.1"; sha256="19yphb0834qriq7w2y287750rrc0kqibx76yx95qwyh6ymzcvha2"; depends=[dplyr geiger ggplot2 ouch tidyr]; }; + plyr = derive2 { name="plyr"; version="1.8.4"; sha256="1igar5pcjqh0jyxv0z3jah8rz617vfa86vw0r5c7c031b7bj5db0"; depends=[Rcpp]; }; + pmc = derive2 { name="pmc"; version="1.0.2"; sha256="1pamxg2cwyg36w0xnggrv5w03lb12l25z2da7xm1jvr17h0ipqmh"; depends=[dplyr geiger ggplot2 ouch tidyr]; }; pmcgd = derive2 { name="pmcgd"; version="1.1"; sha256="1pybzvyjmzpcnxrjsas06diy3x83i1r5491s6ccyr63l56hs55d5"; depends=[mixture mnormt]; }; - pmclust = derive2 { name="pmclust"; version="0.1-7"; sha256="1k6lllhx8ki9c8kkl6al75zqy50h570j49242wb39h50s78bxp00"; depends=[MASS pbdBASE pbdDMAT pbdMPI]; }; + pmclust = derive2 { name="pmclust"; version="0.1-9"; sha256="1p506d3gs0i46zjdia0pc71wwfv6nrfkmk5qaan5sdz6vn24zjhj"; depends=[MASS pbdBASE pbdDMAT pbdMPI]; }; pmg = derive2 { name="pmg"; version="0.9-43"; sha256="0i7d50m4w7p8ipyx2d3qmc54aiqvw0ls8igkk8s1xc7k8ympfqi6"; depends=[foreign gWidgets gWidgetsRGtk2 lattice MASS proto]; }; + pmhtutorial = derive2 { name="pmhtutorial"; version="1.0.0"; sha256="0r1yw65ixm3zjpiwg800rfwr1p26i6apv4332pgfl84hj5vvp3ws"; depends=[mvtnorm Quandl]; }; pmlr = derive2 { name="pmlr"; version="1.0"; sha256="1z3hbw4wabpai1q8kbn77nzxqziag8y04cidlfiw7z969s4pkmgl"; depends=[]; }; - pmml = derive2 { name="pmml"; version="1.5.0"; sha256="192jffh9xb7zfvx4crpynrbdrx1fpiq303c2xz1wjqnq7wjmb3qw"; depends=[survival XML]; }; + pmml = derive2 { name="pmml"; version="1.5.1"; sha256="1w53lkzsgi8d3h89zpr4la3r52mhqxr6a7hazhsmvwhjfkz874ki"; depends=[survival XML]; }; pmmlTransformations = derive2 { name="pmmlTransformations"; version="1.3.0"; sha256="17dhgpldwadsvm25p8xwqsamcn1ypsqdijy2jia048qqmsy4ky86"; depends=[]; }; pmr = derive2 { name="pmr"; version="1.2.5"; sha256="0dq97dfjmgxlhr3a2n20vyyzfmamcicw878hdxpw31lw02xs6yls"; depends=[]; }; - pnea = derive2 { name="pnea"; version="1.2.4"; sha256="1yfh1z09x822zzila6kq82s5cn4sgnbprwmim251y61k3xw0ad9m"; depends=[]; }; - pnf = derive2 { name="pnf"; version="0.1.1"; sha256="0kasq27dnjwqzlzybc8m3wv9jwyag6z38ayv88msa7lxcnibr34i"; depends=[]; }; png = derive2 { name="png"; version="0.1-7"; sha256="0g2mcp55lvvpx4kd3mn225mpbxqcq73wy5qx8b4lyf04iybgysg2"; depends=[]; }; pnmtrem = derive2 { name="pnmtrem"; version="1.3"; sha256="0053gg368sdpcw2qzydpq0c5v2cxdlwgf5k68cbw0yx41csjgvz0"; depends=[MASS]; }; pnn = derive2 { name="pnn"; version="1.0.1"; sha256="1s6ib60sbdas4720hrsr5lsszsa474kfblqcalsb56c84gkl42ka"; depends=[]; }; poLCA = derive2 { name="poLCA"; version="1.4.1"; sha256="0bknnndcxsnlq6z9k1vbhqiib1mlzlx4badz85kc7a3xbrdrfs9f"; depends=[MASS scatterplot3d]; }; pocrm = derive2 { name="pocrm"; version="0.9"; sha256="0p7a7xm1iyyjgzyi7ik2n34gqc3lsnallrijzdakghb8k5cybm4m"; depends=[dfcrm nnet]; }; - pogit = derive2 { name="pogit"; version="1.0.1"; sha256="19sawm7j5fa9s1nlz4hvhpgjj7n3rrnsh2m5a6scxis4brnaa98n"; depends=[BayesLogit ggplot2 logistf plyr]; }; + pogit = derive2 { name="pogit"; version="1.1.0"; sha256="145dh48scxx4wcdr2g7548vg4g03w1ji7hz91752im9a27v7s4pa"; depends=[BayesLogit ggplot2 logistf plyr]; }; poibin = derive2 { name="poibin"; version="1.2"; sha256="12dm1kdalbqy8k7dfldf89v6zw6nd0f73gcdx32xbmry2l2976sa"; depends=[]; }; poilog = derive2 { name="poilog"; version="0.4"; sha256="0bg03rd5rn4rbdpiv87i8lamhs5m7n7cj8qf48wpnirg6jpdxggs"; depends=[]; }; - pointRes = derive2 { name="pointRes"; version="1.1.1"; sha256="1l1rn3siz1rgwx41vgknjxsiklkk2q1sycnlgd394j62v0pl23am"; depends=[ggplot2 gridExtra plyr TripleR]; }; + pointRes = derive2 { name="pointRes"; version="1.1.3"; sha256="0yfzidc93ghpf116lxbx4fr0d71wl79y3nz6mkirx4pli6gb8x8d"; depends=[ggplot2 gridExtra plyr TripleR]; }; pointdensityP = derive2 { name="pointdensityP"; version="0.2.1"; sha256="013vamdh987w56bmz0m6j2xas4ycv1zwxs860rs5z4i55dhgf9kh"; depends=[]; }; + poio = derive2 { name="poio"; version="0.0-3"; sha256="1smbnqjlicaqq2hswl910yiirzb9zikbk4pqxm9pwpixywj0nkys"; depends=[assertive_base assertive_files assertive_properties assertive_sets assertive_strings assertive_types devtools digest dplyr magrittr R6 stringi tibble whoami]; }; poisDoubleSamp = derive2 { name="poisDoubleSamp"; version="1.1"; sha256="13wyj9jf161218y4zjv2haavlmanihp9l59cvh7x8pfr9dh2dwr8"; depends=[Rcpp]; }; poisson = derive2 { name="poisson"; version="1.0"; sha256="1diyf1b84sr6iai3ghd3kcp6fc6w7fan49wzs1lzvxxsmp15ag2d"; depends=[]; }; poisson_glm_mix = derive2 { name="poisson.glm.mix"; version="1.2"; sha256="0328m279jfa1fasi9ha304k4wcybzr7hldww7wn0cl7anfxykbv8"; depends=[]; }; poistweedie = derive2 { name="poistweedie"; version="1.0"; sha256="18992fafypds3qsb52c09fasm3hzlyh5zya6cw32wnhipmda643m"; depends=[]; }; polidata = derive2 { name="polidata"; version="0.1.0"; sha256="07641v0dnn161kyxx7viplkf8c3r51hd4hd5pzmcph4y4387r01i"; depends=[jsonlite RCurl]; }; - pollstR = derive2 { name="pollstR"; version="1.2.2"; sha256="1ii832gil8ppwf8hd8simnbqbc4yq75myb2zin9wmimm5zaqzn2s"; depends=[httr jsonlite plyr]; }; + poliscidata = derive2 { name="poliscidata"; version="1.2.0"; sha256="0vn9wdlh3bi24mcq0r4ani2b0hhlg1za1z6fw8ikz7952gpacqk8"; depends=[abind car descr ENmisc gplots Hmisc plotrix plyr survey weights xtable]; }; + pollen = derive2 { name="pollen"; version="0.50.0"; sha256="1f6bjh7vkwyma8jzigdcijazmzr2mhnmwmaf135lx81d044xj2zr"; depends=[dplyr lubridate purrr]; }; + pollstR = derive2 { name="pollstR"; version="2.0.0"; sha256="0lcxhi1mazs8nh9hbbqyqx4axn5lji5fnp0kxrjwjxmzf59nksj8"; depends=[httr lubridate purrr stringr]; }; + polmineR = derive2 { name="polmineR"; version="0.7.0"; sha256="13ncdqn1wh5rcad79l0d388qnyi3171djfbz3qjkzw05n3q8rk57"; depends=[data_table DT foreach Matrix R6 slam tm]; }; polspline = derive2 { name="polspline"; version="1.1.12"; sha256="0chg5f6fq5ngjp1kkm4kjyxjc3kk83ky2ky5k7q3rhd8rkhd4szw"; depends=[]; }; polyCub = derive2 { name="polyCub"; version="0.5-2"; sha256="1j28ia53za3sh9q7q1g5bnmlb5mbzf44bcwzv0919lvkw01f2lvj"; depends=[sp spatstat]; }; polySegratio = derive2 { name="polySegratio"; version="0.2-4"; sha256="05kvj475zhlrmp7rm691cfs28igp4ac2cn2xxf7axx09v1nq33db"; depends=[gdata]; }; @@ -6271,39 +7833,45 @@ in with self; { polyaAeppli = derive2 { name="polyaAeppli"; version="2.0"; sha256="0kyz3ap92xz7aqyviyrpggfmicy1gybrx7y19djsmixcwz53zqch"; depends=[]; }; polyapost = derive2 { name="polyapost"; version="1.4-2"; sha256="0nr8mw0k79kz5zd1k81kz0i940vmlzqqscn1z1yaik0rx8i7mhs7"; depends=[boot rcdd]; }; polychaosbasics = derive2 { name="polychaosbasics"; version="1.1-0"; sha256="0yb119y0a2xjsijxbrxgksnhf3m997dgp9d57wghq68dsfjp3hf3"; depends=[lhs MASS]; }; - polyclip = derive2 { name="polyclip"; version="1.4-1"; sha256="0aaqakzxba9xqnr3wd7x3r7qkk16gb9d6kgbgrnxd1vn15p449j6"; depends=[]; }; - polycor = derive2 { name="polycor"; version="0.7-8"; sha256="0hvww5grl68dff23069smfk3isysyi5n2jm4qmaynrk0m3yvhxwn"; depends=[mvtnorm sfsmisc]; }; - polyfreqs = derive2 { name="polyfreqs"; version="1.0.0"; sha256="01rl3s7dav1i643fq3r9x8brff48xi49jqiv3hsh8rlifny8wf0z"; depends=[Rcpp RcppArmadillo]; }; - polynom = derive2 { name="polynom"; version="1.3-8"; sha256="05lng88c8cwj65cav31hsrca9nbrqn5rmcz79b17issyk2j0g86p"; depends=[]; }; - polysat = derive2 { name="polysat"; version="1.4-1"; sha256="0n44l66x270biigwf8lwbzsqd3p4zv40firrw07sfbf779cbwd3h"; depends=[]; }; + polyclip = derive2 { name="polyclip"; version="1.5-6"; sha256="1ypwvgd5z61md539z7ndmpl8vaifsjbm231n08zsxskskj1fid7y"; depends=[]; }; + polycor = derive2 { name="polycor"; version="0.7-9"; sha256="0d0756faksviic5jrc47fg6l3wsm9r2wlbnxiw08563rv7shbvb7"; depends=[Matrix mvtnorm]; }; + polyfreqs = derive2 { name="polyfreqs"; version="1.0.2"; sha256="13859vbpys5yj1qiapyzv9wlvi6x6k0rm335bsi1v07ch3x2bh3b"; depends=[Rcpp]; }; + polynom = derive2 { name="polynom"; version="1.3-9"; sha256="1s4xxv5rvpigawknvq27v9vzvs83phfsj5h8mim2lmf5bj950nnk"; depends=[]; }; + polysat = derive2 { name="polysat"; version="1.6-0"; sha256="180hf1m2pd9jcz02q0jq3s5sv5h73qc20w3b2sx1psdbyzdk9006"; depends=[]; }; polywog = derive2 { name="polywog"; version="0.4-0"; sha256="0wl9br0g4kgi3nz2fq28nsk6fw0ll0y715v4vz8lv3pvfwc7518j"; depends=[foreach Formula glmnet iterators Matrix miscTools ncvreg Rcpp stringr]; }; pom = derive2 { name="pom"; version="1.1"; sha256="02jv19apn0kmp1ric2cxajlaad2fmsz4nm4izd2c3691vzas7l83"; depends=[matrixcalc]; }; - pomp = derive2 { name="pomp"; version="1.3.1.1"; sha256="1jy20h9qk80plizsqjbynvadphxz7hnji3pgl6ln48cddgn26qjf"; depends=[coda deSolve digest mvtnorm nloptr subplex]; }; + pomp = derive2 { name="pomp"; version="1.10"; sha256="1v4mkgn0vn83kgl2la94gnc5g1xxkk1h5gxvjyzkqgkakaigwmsx"; depends=[coda deSolve digest mvtnorm nloptr subplex]; }; pooh = derive2 { name="pooh"; version="0.3-1"; sha256="0fn711jyn18byfc2nq3y154k8rb39vpnfw1a0xw73pqp1cwd2i73"; depends=[]; }; - popEpi = derive2 { name="popEpi"; version="0.2.1"; sha256="0xna95gqqbqlfxaarzvyq4c724sxqw0fh9kn46sf674lr13n0jj2"; depends=[data_table Epi]; }; + pop = derive2 { name="pop"; version="0.1"; sha256="0hbxdrkasb69x7ipddvyrzl5vvc7dd6rzj1vy7v3chg3rzgq89cj"; depends=[igraph MASS]; }; + pop_wolf = derive2 { name="pop.wolf"; version="0.1"; sha256="19n00xv47v9j7slvm2ykzlksjfwjzimf88b3nk0y0192c29sdc9x"; depends=[abind]; }; + popEpi = derive2 { name="popEpi"; version="0.4.1"; sha256="0n4kf3h6zgr7sc2bk8bbrf5bvaybnacy6vsqck63gfdn3kkc43m2"; depends=[data_table Epi survival]; }; popKorn = derive2 { name="popKorn"; version="0.3-0"; sha256="1zcl6ms7ghbcjyjgfg35h37ma8nspg15rk2ik82yalqlzxjf7kxw"; depends=[boot]; }; popRange = derive2 { name="popRange"; version="1.1.3"; sha256="0kkz6va0p8zv3skaqqcpw42014d9x9x4ilx0czz91qf46h61jgb0"; depends=[findpython]; }; popReconstruct = derive2 { name="popReconstruct"; version="1.0-4"; sha256="14lp0hfnzbiw81fnq7gzpr4lxyfh3g0428rm9jwjh631irz3fcc9"; depends=[coda]; }; - popbio = derive2 { name="popbio"; version="2.4.2"; sha256="1p0699hvc0qbp5sgxh812rbmkiqxbm8c9zrv4m9iq9dq5ad53zrc"; depends=[]; }; - popdemo = derive2 { name="popdemo"; version="0.1-4"; sha256="0syhmm8fnxbsdzj75y7dpahmpf453a6gwp3yljkvmfl0bfv1g1ng"; depends=[expm]; }; + popbio = derive2 { name="popbio"; version="2.4.3"; sha256="1c34izyp6gpic3yv1rhg1snv2irw0bj9r1w9b892l7x0mxxmn2bl"; depends=[]; }; + popdemo = derive2 { name="popdemo"; version="0.2-3"; sha256="0r3qdvwjwqzqxk3zp9vfzxwmc5fhjzn0ka91b37g62nanwxiyayw"; depends=[expm]; }; popgraph = derive2 { name="popgraph"; version="1.4"; sha256="1z6w6vj3vl2w10hvzwmkw4d475bqcd6ys92xnn445ag6vpq0cvxq"; depends=[ggplot2 igraph MASS Matrix sampling sp]; }; poplite = derive2 { name="poplite"; version="0.99.16"; sha256="0yp1hfda2k6c5x0gbcfxj9h6igzx3ra05xs7g88wjz76yxp3wb6w"; depends=[DBI dplyr igraph lazyeval RSQLite]; }; - poppr = derive2 { name="poppr"; version="2.1.1"; sha256="1sav268n00h56ppc4adda4qpbmx3wsjyiz4q784qwzf6i6f46faa"; depends=[ade4 adegenet ape boot dplyr ggplot2 igraph pegas phangorn reshape2 shiny vegan]; }; - popprxl = derive2 { name="popprxl"; version="0.1.1"; sha256="0zcl4kbb9yrrkkky9qx30g42qphibi7mq1bwkncw2dn5gjkx4zf8"; depends=[poppr readxl]; }; - popsom = derive2 { name="popsom"; version="3.0.1"; sha256="0qj4l5cdzrhiaq1q6q7wv75jnbfvw1rrms2v6ffw34wz4fs1w6is"; depends=[fields som]; }; + poppr = derive2 { name="poppr"; version="2.3.0"; sha256="0zhmsx23fjjl8zy7s0gyzd0br4imdl2hfgk0g9v9p2ff72xg046d"; depends=[ade4 adegenet ape boot dplyr ggplot2 igraph magrittr pegas phangorn reshape2 shiny vegan]; }; + popprxl = derive2 { name="popprxl"; version="0.1.3"; sha256="1l842zgn04s8ghbcp8s2lzg7lgc809xd7hg9crnyp23c2cr0jlvi"; depends=[poppr readxl]; }; + popsom = derive2 { name="popsom"; version="4.0.1"; sha256="1qw6b00mz9i842askixc0288i41v8dfjwc58pa3cbgf6fhfjva9z"; depends=[class fields som]; }; + poptrend = derive2 { name="poptrend"; version="0.1.0"; sha256="0hypxpb18azg6q1mqrphbx3x262h9ybwhlkb8fyd6vr7jjb5wn3h"; depends=[mgcv]; }; population = derive2 { name="population"; version="0.1"; sha256="1xcm38hipasf6x5grsn7dqayy2g5mwppx2dvi5lwax5a6dqjk792"; depends=[abind]; }; portes = derive2 { name="portes"; version="2.1-3"; sha256="0nqh6aync5igmvg7nr5inkv2cwgzd0zi6ky0vvrc3abchqsjm2ck"; depends=[]; }; portfolio = derive2 { name="portfolio"; version="0.4-7"; sha256="0gs1a4qh68xsvl7yi6mz67lamwlqyqjbljpyax795piv46kkm06p"; depends=[lattice nlme]; }; portfolioSim = derive2 { name="portfolioSim"; version="0.2-7"; sha256="1vf46882ys06ia6gfiibxx1b1g81xrg0zzman9hvsj4iky3pwbar"; depends=[lattice portfolio]; }; + postGIStools = derive2 { name="postGIStools"; version="0.2.1"; sha256="1dmf77xpy61pqis3j9qzjjksmm9hkyhzxqdmjajpj7rkbqhl5qvp"; depends=[DBI jsonlite rgdal rgeos RPostgreSQL sp stringr]; }; potts = derive2 { name="potts"; version="0.5-4"; sha256="1818md2mdkf47r5vcqawnn84lanir9q6r72kf41lq4zbjkk2yazv"; depends=[]; }; - poweRlaw = derive2 { name="poweRlaw"; version="0.50.0"; sha256="1y9f21sl601rb1qsljgkbnsb9jd76k1k91n7cbz7iyzy8n345jgm"; depends=[VGAM]; }; + poweRlaw = derive2 { name="poweRlaw"; version="0.70.0"; sha256="1p2la3hslxq2xa8jkwvci6zcpn47cvyr9xqd5agp1riwwp2xw5gh"; depends=[VGAM]; }; powell = derive2 { name="powell"; version="1.0-0"; sha256="160i4ki3ymvq08szaxshqlz7w063493j5zqvnw6cgjmxs7y0vj8y"; depends=[]; }; - powerAnalysis = derive2 { name="powerAnalysis"; version="0.2"; sha256="15ff3wnn37sjkiyycgh16g7gwl3l321fbw12kv621dad5bki14jl"; depends=[]; }; + powerAnalysis = derive2 { name="powerAnalysis"; version="0.2.1"; sha256="0cma4v402n6wcb2gy9g1ymydzh8vimy9nfrrn8xhnjsf7x6jh215"; depends=[]; }; + powerEQTL = derive2 { name="powerEQTL"; version="0.1.3"; sha256="1045vkzl5p20mqlsm0j6vnyyvfz5v6jyy443c38sw1cps0a09i1n"; depends=[powerMediation]; }; powerGWASinteraction = derive2 { name="powerGWASinteraction"; version="1.1.3"; sha256="1i8gfsk9qzx54yn661i4x9k7n7b6r1jd808wv1hcq7870mzyb27k"; depends=[mvtnorm pwr]; }; - powerMediation = derive2 { name="powerMediation"; version="0.2.4"; sha256="1b4hzai52fb0kk04az3rdbfk2vldfkhsa4gx7g98lbsvw4gh9imb"; depends=[]; }; + powerMediation = derive2 { name="powerMediation"; version="0.2.7"; sha256="1zqkwwlv57k5b86lcqjbdn11xgxayhsdqrq64n5pai8n4jxrkr5g"; depends=[]; }; powerSurvEpi = derive2 { name="powerSurvEpi"; version="0.0.9"; sha256="0f8i867zc1yjdp66rjb1cp92fcfrlq167z3d0c4iv355wv4s35az"; depends=[survival]; }; + powerbydesign = derive2 { name="powerbydesign"; version="1.0.3"; sha256="0dv4j0kwdzvxnq587vs1dsy2yci3v3q2smncpscpcsalp38rvx4i"; depends=[gdata ggplot2 lme4 MASS plyr reshape2 stringr]; }; powerpkg = derive2 { name="powerpkg"; version="1.5"; sha256="0mbk2fda2fvyp1h5lk5b1fg398xybbjv0z6kdx7w7xj345misf7l"; depends=[]; }; - powerplus = derive2 { name="powerplus"; version="1.0"; sha256="0k8kir2lcr8036phfnhgw573nhfqijlh56p3pzgzbchwzrj9z10r"; depends=[expm MASS Matrix phonTools]; }; + powerplus = derive2 { name="powerplus"; version="3.0"; sha256="0gm2iw6d7rpaxzpp66si9ra7vhw4gpwjm4b2dzf9fvq67bzdvcc6"; depends=[complexplus expm MASS Matrix phonTools]; }; ppcor = derive2 { name="ppcor"; version="1.1"; sha256="1x9b2kb8s0bp92b17gby0jwzzr3i4cf3ap9c4nq7m8fav72g0y3a"; depends=[MASS]; }; ppiPre = derive2 { name="ppiPre"; version="1.9"; sha256="07k2mriyz1wmxb5gka0637q4pmvnmd1j16mnkkdrsx252klgjsdw"; depends=[AnnotationDbi e1071 GO_db GOSemSim igraph]; }; ppls = derive2 { name="ppls"; version="1.6-1"; sha256="1r3h4pf79bkzpqdvyg33nwjabsqfv7r8a4ziq2zwx5vvm7mdy7pd"; depends=[MASS]; }; @@ -6312,30 +7880,42 @@ in with self; { pqantimalarials = derive2 { name="pqantimalarials"; version="0.2"; sha256="0azxkf1rvk9cyzr4gbp4y2vcxrxw3d4f002d5gjkvv1f4kx8faw1"; depends=[plyr RColorBrewer reshape2 shiny]; }; prLogistic = derive2 { name="prLogistic"; version="1.2"; sha256="1abwz7nqkz2qbyqyr603kl9a3rkad3f4vxhck6a9kl80xrmfrj9s"; depends=[boot Hmisc lme4]; }; prabclus = derive2 { name="prabclus"; version="2.2-6"; sha256="0qjsxrx6yv338bxm4ki0w9h8hind1l98abdrz828588bwj02jya1"; depends=[MASS mclust]; }; - pracma = derive2 { name="pracma"; version="1.8.8"; sha256="0ans9l5rrb7a38gyi4qx4258sd5r5668vyrk02yzjpg9k3h8l165"; depends=[]; }; + pracma = derive2 { name="pracma"; version="1.9.9"; sha256="1g062d9lsjkqrd5m91h55pc3zcqha9drmdi4zqic4hx6qyyhy2q1"; depends=[quadprog]; }; pragma = derive2 { name="pragma"; version="0.1.3"; sha256="1n30a346pph4d8cj4p4qx2l6fnwhkxa8yxdisx47pix376ljpjfx"; depends=[]; }; prais = derive2 { name="prais"; version="0.1.1"; sha256="0vv6h12gsbipi0gnq0w6xh6qvnvc0ydn341g1gnn3zc2n7cx8zcn"; depends=[]; }; praise = derive2 { name="praise"; version="1.0.0"; sha256="1gfyypnvmih97p2r0php9qa39grzqpsdbq5g0fdsbpq5zms5w0sw"; depends=[]; }; praktikum = derive2 { name="praktikum"; version="0.1"; sha256="0kkydgglvqw371fxh46fi86fmdndhwq1n8qj0ynbh2gz1cn86aw1"; depends=[]; }; prc = derive2 { name="prc"; version="2015.6-24"; sha256="0sf664zqcq6xylhd7rvm2l2xj3f4j6llaj7j4b4847wfxnas2j02"; depends=[kyotil nlme]; }; - prclust = derive2 { name="prclust"; version="1.1"; sha256="0dm7qjvwyrym3sff24k5zz87835dhldrm3qiyyx6xq92p0wn89jz"; depends=[Rcpp]; }; - precintcon = derive2 { name="precintcon"; version="2.2.1"; sha256="1z63aa8i2jyc0a8n5q1ny2p3mzxadyk1kk94rz8dp6j6kp2hxnf8"; depends=[ggplot2 scales]; }; - precrec = derive2 { name="precrec"; version="0.3.1"; sha256="0i131qzmvv1sscl6ngh4gd6i39whph697pwv2sycwr480cqw07pq"; depends=[assertthat ggplot2 gridExtra Rcpp]; }; - predictmeans = derive2 { name="predictmeans"; version="0.99"; sha256="1qfqh21d3m0k2491hv5rl5k4v49j5089xsdk3bxicp30l512rax0"; depends=[ggplot2 lattice lme4 nlme plyr]; }; + prcbench = derive2 { name="prcbench"; version="0.6.2"; sha256="1dg4d5x7w368bllgblp1c9kahv9dd43vdfxvv8i3c9nz003z84bs"; depends=[assertthat ggplot2 gridExtra memoise precrec PRROC R6 rJava ROCR]; }; + prclust = derive2 { name="prclust"; version="1.3"; sha256="0p0sf8248aigs99py8mpzz743jnrf7n1nv5shag15arxz9yx7zn3"; depends=[Rcpp]; }; + prcr = derive2 { name="prcr"; version="0.1.0"; sha256="0bm1jixkdz682721j78kigs6v6dyckj4va41ik4f94ikb5j2f7hh"; depends=[dplyr ggplot2 tibble tidyr]; }; + pre = derive2 { name="pre"; version="0.1"; sha256="1y9mz0rp1rf595n8b2fy6rncrw7d41d8vlxi6phclfdawv9bkn9z"; depends=[Formula glmnet MatrixModels partykit]; }; + preText = derive2 { name="preText"; version="0.4.4"; sha256="0ivzm9mcwnf9yrgvwzjiaqkpfv8fr7v8ci61gn8x09jiw8w8l5j4"; depends=[cowplot ecodist ggplot2 gridExtra proxy quanteda reshape2 topicmodels vegan]; }; + precintcon = derive2 { name="precintcon"; version="2.3.0"; sha256="1sf0mfqa77aqhbx3hg8pv582ibmfnv6vigqcd3xqsbq7nigy2ms9"; depends=[ggplot2 scales]; }; + precrec = derive2 { name="precrec"; version="0.6.2"; sha256="100zr5932vm1rs359nzq4cxbx924az5d8zl9h7720fd5sgy4av7f"; depends=[assertthat ggplot2 gridExtra Rcpp]; }; + predatory = derive2 { name="predatory"; version="1.1"; sha256="18nv8riw380acvgb8iz771wzdgrmkrwcvdxbxhkbczcdhgw1p0ig"; depends=[readr stringr]; }; + prediction = derive2 { name="prediction"; version="0.1.1"; sha256="0ys0pds2x8nhkf45dp5f0pmp64al670w7xgr5hbifmykn2ivdiqr"; depends=[]; }; + predictionInterval = derive2 { name="predictionInterval"; version="1.0.0"; sha256="029hc57cblfcbqckrghf95l2rkn7acgb4yr36da01bx8bmpww0bn"; depends=[ggplot2 MASS MBESS pbapply]; }; + predictmeans = derive2 { name="predictmeans"; version="0.99"; sha256="1qfqh21d3m0k2491hv5rl5k4v49j5089xsdk3bxicp30l512rax0"; depends=[ggplot2 lattice lme4 nlme pbkrtest plyr]; }; predmixcor = derive2 { name="predmixcor"; version="1.1-1"; sha256="0v99as0dzn0lqnbbzycq9j885rgsa1cy4qgbya37bbjd01b3pykd"; depends=[]; }; prefmod = derive2 { name="prefmod"; version="0.8-33"; sha256="0wklp3djy3z8lq0vrjrzqha6r8z00jwdm6d9ffyq5vhimmbirzj8"; depends=[colorspace gnm]; }; - prepdat = derive2 { name="prepdat"; version="1.0.7"; sha256="05i6iv4vk83lcmpsqcn85vq62p3irfmbf1zjs5prl2d88xlqj7w9"; depends=[dplyr psych reshape2]; }; - preprocomb = derive2 { name="preprocomb"; version="0.2.0"; sha256="0kfmdz926ianvy016hb6ba20qkh9pbgnzi1dali4bc4h8qhnjz5y"; depends=[arules caret clustertend DMwR e1071 randomForest zoo]; }; - preproviz = derive2 { name="preproviz"; version="0.1.1"; sha256="0k2jap204zqwbbq53vdvzks8kivyp7myg1s9srfd8x6jqcy045yi"; depends=[caret ClustOfVar DMwR ggdendro ggplot2 gridExtra randomForest reshape2]; }; - presens = derive2 { name="presens"; version="2.0.0"; sha256="1srrb1d2f5bszkcpi2xdq7ccjhsyp3dihfr0zqhn0m71whnzhi7z"; depends=[birk marelac]; }; - preseqR = derive2 { name="preseqR"; version="2.0.0"; sha256="06jxd7vndvf63bwlsyc3ydwiw5z88y1i87iqd32gchfrg4iaw6xl"; depends=[polynom]; }; + prepdat = derive2 { name="prepdat"; version="1.0.8"; sha256="19rxyss96cmjhzm69f6l1cd3vkw3wskzhxnbmrz4546x00gf9g5v"; depends=[dplyr psych reshape2]; }; + preprocomb = derive2 { name="preprocomb"; version="0.3.0"; sha256="08dhzil8prmjb6if0yba9pjncfxf5zzvlrrabva7c5jhny806c5g"; depends=[arules caret clustertend DMwR doParallel e1071 foreach randomForest zoo]; }; + preprosim = derive2 { name="preprosim"; version="0.2.0"; sha256="1z10ranfal51vzsnndfaw5aqddh2w1xx8h50j1p7gx4fi90d0waq"; depends=[caret DMwR doParallel e1071 foreach ggplot2 reshape2]; }; + preproviz = derive2 { name="preproviz"; version="0.2.0"; sha256="0jb85qkzywsd2iyfynd8ngkc136m4qc38phc3fgxm2qw30dacmyh"; depends=[caret ClustOfVar DMwR ggdendro ggplot2 gridExtra randomForest reshape2]; }; + prereg = derive2 { name="prereg"; version="0.2.0"; sha256="098352svjdf8cfmb9qwbv71xb4irxcr70r06bvnqdv5bliq9fzin"; depends=[rmarkdown]; }; + presens = derive2 { name="presens"; version="2.1.0"; sha256="175nr9pqn3m6kh9bcc1gxqmqv05xdsqdw9lx385lmm1g947d2159"; depends=[marelac measurements]; }; + preseqR = derive2 { name="preseqR"; version="3.0.0"; sha256="07pwqn985dg5kjx65gfgcyg1nywjpxaswa7i6nsr8h0cr7a2mc9j"; depends=[polynom]; }; prettyGraphs = derive2 { name="prettyGraphs"; version="2.1.5"; sha256="19jag5cymancxy5lvkj5mkhdbxr37pciqj4vdvmxr82mvw3d75m4"; depends=[]; }; prettyR = derive2 { name="prettyR"; version="2.2"; sha256="026cgbrqs799lg06qlwx1r9ramil790qxrb1cyl4w7mzf8sfpgn9"; depends=[]; }; - prettymapr = derive2 { name="prettymapr"; version="0.1.4"; sha256="02ha33fppxj4hp7xicpzjri50cbvgzx0mi3nlxc60zvb5gm0zgkk"; depends=[digest foreach rgdal rjson sp]; }; + prettycode = derive2 { name="prettycode"; version="1.0.0"; sha256="1zba83b5sk8jyag8jz8gipn6qpxwfsfg1xcxamfvpmzjicajzhbx"; depends=[crayon withr]; }; + prettydoc = derive2 { name="prettydoc"; version="0.2.0"; sha256="1zpvi4lyjazhj2h6m3j46x93s9c2300xqylaqy6gp1yjn9im36dp"; depends=[rmarkdown]; }; + prettymapr = derive2 { name="prettymapr"; version="0.1.5"; sha256="1mccqidbnyl31wzbf5ly8qv23v6zha1chqna59j97cc2m3rhkqdf"; depends=[digest foreach rgdal rjson sp]; }; prettyunits = derive2 { name="prettyunits"; version="1.0.2"; sha256="0p3z42hnk53x7ky4d1dr2brf7p8gv3agxr71i99m01n2hq2ri91m"; depends=[assertthat magrittr]; }; prevR = derive2 { name="prevR"; version="3.3"; sha256="11syifnv0mgbybsphgaj3a2j29p2q0l4y4w008n2r9s359arjj8m"; depends=[directlabels fields foreign GenKern ggplot2 gstat maptools rgdal sp]; }; prevalence = derive2 { name="prevalence"; version="0.4.0"; sha256="0vnmglxj1p66sgkw4ffc4wgn0w4s281fk2yifx5cn4svwijv30q0"; depends=[coda rjags]; }; prim = derive2 { name="prim"; version="1.0.16"; sha256="0i5jpk798qbvyv9adgjbzpg4dvf7x51bcgbdp38fzdnam6g88y5a"; depends=[misc3d rgl]; }; + primefactr = derive2 { name="primefactr"; version="0.1.0"; sha256="1p0hlf0llyfccg0pa2fccxp8zzhwsyrpd18d8ih1z7mx88kyrhwm"; depends=[]; }; primer = derive2 { name="primer"; version="1.0"; sha256="0vkq794a9qmz9klgzz7xz35msnmhdaq3f91lcix762wlchz6v7sg"; depends=[deSolve lattice]; }; primerTree = derive2 { name="primerTree"; version="1.0.3"; sha256="0k81h6ln9yjg3r4j8n5f8g8xlrq1pvrr5ywrw16s4mjjhx3r1ylg"; depends=[ape directlabels foreach ggplot2 gridExtra httr lubridate plyr scales stringr XML]; }; primes = derive2 { name="primes"; version="0.1.0"; sha256="0hhkgpkadvai9xcivfalsvr5w0irsxygyz3p2zngwl3g5rvvh5g9"; depends=[Rcpp]; }; @@ -6343,831 +7923,1066 @@ in with self; { prinsimp = derive2 { name="prinsimp"; version="0.8-8"; sha256="074a27ml0x0m23hlznv6qz6wvfqkv08qxh3v1sbkl9nxrc7ak4vn"; depends=[]; }; prism = derive2 { name="prism"; version="0.0.7"; sha256="03z1m09vf2gd277xp3y5nhvgrp0fnbr2x0r9b92kp46ca09fq9y8"; depends=[ggplot2 httr raster]; }; pro = derive2 { name="pro"; version="0.1.1"; sha256="0f0iliq7bhf313hi0jbwavljic4laxfc0n3gac5y6hzm39gvvgag"; depends=[]; }; - prob = derive2 { name="prob"; version="0.9-5"; sha256="05skjqimzhnk99z864466dc8qx58pavrky320il91yqyr8b98j8b"; depends=[combinat fAsianOptions hypergeo VGAM]; }; + prob = derive2 { name="prob"; version="1.0-0"; sha256="0gnp3q3dm176c1n7vdgisv3p11m2jk1hiza1yi8qaqyd9mfh86bg"; depends=[combinat fAsianOptions]; }; probFDA = derive2 { name="probFDA"; version="1.0.1"; sha256="093k50kyady54rkrz0n9x9z98z5ws36phlj42j25yip7pzhfd6sv"; depends=[MASS]; }; probemod = derive2 { name="probemod"; version="0.2.1"; sha256="1cgjr03amssc9rng8ky4w3abhhijj0d2byzm118dfdjzrgmnrf9g"; depends=[]; }; probsvm = derive2 { name="probsvm"; version="1.00"; sha256="1k0zysym7ncmjy9h7whwi49qsfkpxfk7chfdjrydl6hn6pscis37"; depends=[kernlab]; }; - prodlim = derive2 { name="prodlim"; version="1.5.7"; sha256="11dhzfw3daanmpnwyynx2q2mwkn8fihi4rsikl1f7rmzadis4ixd"; depends=[KernSmooth lava Rcpp survival]; }; + proccalibrad = derive2 { name="proccalibrad"; version="0.14"; sha256="0vr55rpcqh9wvy3bklssrimp42x85w3sanjgshfij657v68vmx46"; depends=[]; }; + processcontrol = derive2 { name="processcontrol"; version="0.1.0"; sha256="0c0bksgq24blfkdgp5bn49sjnaajrg5bag8qzb5zffxbhnm4s30x"; depends=[plyr]; }; + prodigenr = derive2 { name="prodigenr"; version="0.3.0"; sha256="1217l9r012xrgzna1bf9z31n2gw36h6grga3949kg7ghxrzjbm4q"; depends=[devtools]; }; + prodlim = derive2 { name="prodlim"; version="1.5.9"; sha256="0hkv3y0j8crssvw7ck7m4vhzkwsbwl1nwsyjdmzjw42pdj448dl5"; depends=[KernSmooth lava Rcpp survival]; }; + productivity = derive2 { name="productivity"; version="0.1.0"; sha256="0hbysja40yv5ssiq4c3dn5bwypjhjdf1g3x56zms2ck78sk75zxk"; depends=[doParallel foreach Rglpk]; }; + productplots = derive2 { name="productplots"; version="0.1.1"; sha256="1igs6d0qwgsfk0z3vxabgv5kva9w2kpzi535gjfdrbx34j4pf3gx"; depends=[ggplot2 plyr]; }; + prof_tree = derive2 { name="prof.tree"; version="0.1.0"; sha256="0mjvxaacrgkzl0f1wn3fpgah4jh720safni66ri0dnriwcxis6rz"; depends=[data_tree]; }; profdpm = derive2 { name="profdpm"; version="3.3"; sha256="07lhjavrx4fa5950w928mfpddmmnmvdapl5n6mv49m8h3bxs4nmy"; depends=[]; }; profileModel = derive2 { name="profileModel"; version="0.5-9"; sha256="1p9b9jr5842im195d60ja82pp7vbk85vs8b0r3fnf62j4b92aky9"; depends=[]; }; - profileR = derive2 { name="profileR"; version="0.3-2"; sha256="0mr8gzw8055bmqla3kz8g996mnwdki1m3dlxhyrig8h2fy1gmx5a"; depends=[ggplot2 lavaan RColorBrewer reshape]; }; + profileR = derive2 { name="profileR"; version="0.3-3"; sha256="0yc0bgcv8g4qm777l8czvwcw4gsrsgc1f2qgllyid6wsnvw25x6v"; depends=[ggplot2 lavaan RColorBrewer reshape]; }; profilr = derive2 { name="profilr"; version="0.1.0"; sha256="0rw5cjvvrgsdmhgrsaw4skfdk8h488b6mkmibgjj3dd3x0j3caq6"; depends=[]; }; + profmem = derive2 { name="profmem"; version="0.4.0"; sha256="1nnk145hzr447z9frk3c58xks3jp0cdl7cv8schqnyjxqlv967g9"; depends=[]; }; profr = derive2 { name="profr"; version="0.3.1"; sha256="1w06mm89apggy6wc273b2nsp95smajr8sf3dwshykivv7mhkxs5d"; depends=[plyr stringr]; }; proftools = derive2 { name="proftools"; version="0.99-2"; sha256="1vx0270sgx15dl6x3nnx13v5y4c0m18yvrhiycl429zky0jzxfr0"; depends=[]; }; - progenyClust = derive2 { name="progenyClust"; version="1.1"; sha256="0d3p38mb0vg7ymzi751wkdcpkfqzf45li6zsvm8rvma41ky06w63"; depends=[Hmisc]; }; + profvis = derive2 { name="profvis"; version="0.3.3"; sha256="0lj4cr9jkbnvb4876kzkwy8gzrw2flbbwb0gw744f4q0240zybs6"; depends=[htmlwidgets stringr]; }; + progenyClust = derive2 { name="progenyClust"; version="1.2"; sha256="0azp5pvk316s8xbawcqwqfd80fxb4xn8hc6aq87xwksc6fhwp94l"; depends=[Hmisc]; }; prognosticROC = derive2 { name="prognosticROC"; version="0.7"; sha256="0lscsyll41hpfzihdavygdzqw9xxjp48dmy4i17qsx5h01jl1h4i"; depends=[survival]; }; - progress = derive2 { name="progress"; version="1.0.2"; sha256="1dpcfvdg1rf0fd4whcn7k09x70s7jhz8p7nqkm9p13b4nhil76sj"; depends=[prettyunits R6]; }; + progress = derive2 { name="progress"; version="1.1.2"; sha256="1fxakchfjr5vj59s9sxynd7crpz97xj42438rmkhkf3rjpyspx59"; depends=[prettyunits R6]; }; proj4 = derive2 { name="proj4"; version="1.0-8"; sha256="06r3lavgixrsa52d1v31laqcbw6fb9xn23akv39hvaib78diglv9"; depends=[]; }; prop_comb_RR = derive2 { name="prop.comb.RR"; version="1.1"; sha256="0zrz0rywhmb4n3my9ihf070rpmd3xni59rr4dsl1ahq9lkd97h20"; depends=[rootSolve]; }; propOverlap = derive2 { name="propOverlap"; version="1.0"; sha256="0q72z9vbkpll4i3wy3fq06rz97in2cm3jjnvl6p9w8qc44zjlcyl"; depends=[Biobase]; }; propagate = derive2 { name="propagate"; version="1.0-4"; sha256="18vyh4i4zlsmggfyd4w0zrznk75m84k08p1qa9crind04n5581j1"; depends=[ff MASS minpack_lm Rcpp tmvtnorm]; }; properties = derive2 { name="properties"; version="0.0-8"; sha256="1x7zln1indckl090p9kv40snamkac3b8q45387jdqxajmsallxmb"; depends=[]; }; - proportion = derive2 { name="proportion"; version="1.2.0"; sha256="12f4jddr99bv306m6rdvzc1l1xpl7zgg84ka7b691m4s957faxcv"; depends=[ggplot2 TeachingDemos]; }; + prophet = derive2 { name="prophet"; version="0.1"; sha256="0bpkpl0wpvhlcrk5z0fv7ra7l7yxdkbgzlxp99h88ilnad49hh5d"; depends=[dplyr extraDistr ggplot2 Rcpp rstan scales tidyr zoo]; }; + propr = derive2 { name="propr"; version="2.1.2"; sha256="1qymykn6jgbs7pfnm1and8l87m8wyhqfnr1cx1jd1ghw8avniixl"; depends=[fastcluster ggplot2 Rcpp]; }; prospectr = derive2 { name="prospectr"; version="0.1.3"; sha256="18lh03xg6bgzsdsl56bjd63xdp16sqgr3s326sgifkkak8ffbv7q"; depends=[foreach iterators Rcpp RcppArmadillo]; }; - protViz = derive2 { name="protViz"; version="0.2.9"; sha256="0kn2dd3za8mmb6476v3wqnymhihyavw2qsh98i4q3xdiz1g77vql"; depends=[Rcpp]; }; + protViz = derive2 { name="protViz"; version="0.2.28"; sha256="1jnc2picmip1681pw9g9l1p7di65mvr10dybqdl0l9gidchn5p0n"; depends=[Rcpp]; }; proteomicdesign = derive2 { name="proteomicdesign"; version="2.0"; sha256="01s47pgwxy4xx10f3qmbfv59gbaj0qw017kpkpsn33s8w7ad63r0"; depends=[MASS]; }; proteomics = derive2 { name="proteomics"; version="0.2"; sha256="01cd4sb79gcx8gbzl624scvjbwhgcsca1wdvvfkhsv7jfwdd2ry2"; depends=[foreach ggplot2 plyr reshape2]; }; protiq = derive2 { name="protiq"; version="1.2"; sha256="1d5wr9w540a79i57nr0arn5xg7s6jhhy5nrgsk8r3ljidld2s2sa"; depends=[graph mvtnorm RBGL]; }; - proto = derive2 { name="proto"; version="0.3-10"; sha256="03mvzi529y6kjcp9bkpk7zlgpcakb3iz73hca6rpjy14pyzl3nfh"; depends=[]; }; + proto = derive2 { name="proto"; version="1.0.0"; sha256="1l843p8vckjckdhgv37ngv47fga5jzy0n00pmipvp05nnaixk54j"; depends=[]; }; protoclass = derive2 { name="protoclass"; version="1.0"; sha256="17d2m6r1shgb47v8mwdg1a7f5h29m5l7f5m0nsmv0xc90s9cpvk8"; depends=[class]; }; protoclust = derive2 { name="protoclust"; version="1.5"; sha256="03qhqfqdz45s8c1p8c6sqs10i6c2ilx4fz8wkpwas3j78lgylskg"; depends=[]; }; + protolite = derive2 { name="protolite"; version="1.5"; sha256="0x25zcw3ayy0rl0sshd0iisaka25xx0sf6fjzlg26ssqjxhzv2f9"; depends=[jsonlite Rcpp]; }; proton = derive2 { name="proton"; version="1.0"; sha256="1mgaw54is8l6ac1rf8s70rj7kv9xgsfdrlvjz01ggfwg7c6pyr3s"; depends=[digest]; }; prototest = derive2 { name="prototest"; version="1.1"; sha256="0v65abrn73wgwnrrf6gv9f7p0qy12xlk9ishq9lq4qal1wlsrrjs"; depends=[glmnet intervals MASS Rcpp RcppArmadillo]; }; - protr = derive2 { name="protr"; version="1.1-1"; sha256="09iwyfvscz0ajgadfd69hhsnhkaqwpjnly9g6jjrdcqnaj4lw77l"; depends=[]; }; - provenance = derive2 { name="provenance"; version="1.4"; sha256="0kcqa4my4ccbnwp30ir3yxlds8r54kf46s3f0fq7q4dnyajwn4pk"; depends=[MASS]; }; - proxy = derive2 { name="proxy"; version="0.4-15"; sha256="17qnrihxyyyj0lx6hka4mwkgy764ha4jx00a822xjnnbygk81iqv"; depends=[]; }; + protr = derive2 { name="protr"; version="1.2-1"; sha256="08431v94p6c4sw2yqm6jc2v20kdgp5gn8kbl40am875z4a9q7c76"; depends=[]; }; + provenance = derive2 { name="provenance"; version="1.5"; sha256="16hy0wbksa85jvv13ksq9qhsv03vr45qsl0l20b33yapgj358v4z"; depends=[MASS]; }; + proxy = derive2 { name="proxy"; version="0.4-17"; sha256="0bg1fn96qrj8whmnl7c3gv244ksm2ykxxsd0zrmw4lb6465pizl2"; depends=[]; }; prozor = derive2 { name="prozor"; version="0.1.1"; sha256="0yv9yzp8ldn888v2sg62qaq0vjg5xwjq9274x68idrlywzgplfgv"; depends=[doParallel foreach Matrix seqinr]; }; pryr = derive2 { name="pryr"; version="0.1.2"; sha256="1in350a8hxwf580afavasvn3jc7x2p1b7nlwmj1scakfz74vghk5"; depends=[codetools Rcpp stringr]; }; - psData = derive2 { name="psData"; version="0.2"; sha256="0a663giyi0si7pck3zsn0bzl0w1r1g60mp3x8vqzazivccjxc1lf"; depends=[countrycode DataCombine reshape2 rio xlsx]; }; + psData = derive2 { name="psData"; version="0.2.2"; sha256="013hb6lk9rm2w08m5jbw90ndrcd4wyy2h125jx07c9bs60wh4mp4"; depends=[countrycode DataCombine reshape2 rio xlsx]; }; + psbcGroup = derive2 { name="psbcGroup"; version="1.3"; sha256="02h9ghmnmiyg46mi5c9fyz62psyp0l0rbh0pdvn9y0xyagrj7wln"; depends=[LearnBayes mvtnorm SuppDists]; }; pscl = derive2 { name="pscl"; version="1.4.9"; sha256="15fij6n43hry1plgzrak9vmk9xbb7n4v2frv997bhwxbs6jhhfhf"; depends=[lattice MASS]; }; pscore = derive2 { name="pscore"; version="0.1-2"; sha256="1sfkxs2kv8lq87j3q9ci7j38c7gzfkp2l36lwcdhiidr2nls2x0c"; depends=[ggplot2 lavaan reshape2]; }; psd = derive2 { name="psd"; version="1.0-1"; sha256="1ssda4g98m0bk6gkrb7c6ylfsd2a84fq4yhp472n4k8wd73mkdn6"; depends=[RColorBrewer Rcpp RcppArmadillo signal zoo]; }; - pse = derive2 { name="pse"; version="0.4.5"; sha256="0yy6y3xlhqpm8csslv5g8xbnq168and9qxp3xvcl84kif9p064nh"; depends=[boot Hmisc]; }; + pse = derive2 { name="pse"; version="0.4.6"; sha256="155s9ccns1i1nkfmx8112rx16i94f9kv9bak5gcnmi55r5wj7wmj"; depends=[boot Hmisc]; }; pseudo = derive2 { name="pseudo"; version="1.1"; sha256="0dcx6b892cic47rwzazsbnsicpgyrbdcndr3q5s6z0j1b41lzknd"; depends=[geepack KMsurv]; }; - pseval = derive2 { name="pseval"; version="1.0.0"; sha256="17w98qda2h6as2g02fqv6vvrw8m90zsdcfa0i5ss8c546fzchzxl"; depends=[survival]; }; + pseval = derive2 { name="pseval"; version="1.3.0"; sha256="1iv3fa7ar9i7v9j5axbasmn8l8nvry4zvmb7fd8aql82f22szmbj"; depends=[survival]; }; psgp = derive2 { name="psgp"; version="0.3-6"; sha256="0h9gyadfy0djj32pgwhg8vy2gfn7i7yj5nnsm6pvfypc3k71s2wf"; depends=[automap gstat intamap Rcpp RcppArmadillo]; }; - psidR = derive2 { name="psidR"; version="1.3"; sha256="1jdxbjvc309b1bs81v57kc1g7lgfdz84bfakh9qwh8wgjqbjr06i"; depends=[data_table foreign RCurl SAScii]; }; + psidR = derive2 { name="psidR"; version="1.4"; sha256="1whdjsab5cihlq4gp06xafl3zg7z0cjb4622d23v24igz7kr0ic2"; depends=[data_table foreign RCurl SAScii]; }; pso = derive2 { name="pso"; version="1.0.3"; sha256="0alar695c6kc1rsvwipsrvlxc93f3sy9l0yhp0mggyqgxkkvy406"; depends=[]; }; psoptim = derive2 { name="psoptim"; version="1.0"; sha256="1yziabkd3h05cfl5jy5l8ji2y3w21acvxsq3inxyh0iwyr8qdkkl"; depends=[]; }; pspearman = derive2 { name="pspearman"; version="0.3-0"; sha256="1l5mqga7b5nvm6v9gbl1xsspdqsjqyhhdn4gc4qlz6ld7fqfq6cx"; depends=[]; }; pspline = derive2 { name="pspline"; version="1.0-17"; sha256="1n3mhj6q7a1v2k8xkbwji27dihcy3845wp50sx14hy4nbay5kf1r"; depends=[]; }; pssm = derive2 { name="pssm"; version="1.0"; sha256="1af5zvznh04vz5psbmq3xxclm2zh4gl4gxi1ps6aqmiqjpm57dwq"; depends=[abind MASS MHadaptive numDeriv]; }; + pstest = derive2 { name="pstest"; version="0.1.1"; sha256="0k8413ilpbz23v210wz80mli7ajpc8p7y4pbn1za371qw04b81c5"; depends=[harvestr]; }; psy = derive2 { name="psy"; version="1.1"; sha256="027whr670w65pf8f7x0vfk9wmadl6nn2idyi6z971069lf01wdlk"; depends=[]; }; - psych = derive2 { name="psych"; version="1.5.8"; sha256="0bdc49kqbv0yw68rhhgn9by3rqcc9bdg28hdn6wazrg8qvgc3c5h"; depends=[mnormt]; }; + psych = derive2 { name="psych"; version="1.6.12"; sha256="0ijz9gcc52byzmrw4iz976lgayp1wmn5b9v36bras14fwlwri0ky"; depends=[foreign mnormt]; }; psychometric = derive2 { name="psychometric"; version="2.2"; sha256="1b7cx6icixh8k3bv60fqxjjks23qn09vlcimqfv2x3m3nkf8p1s9"; depends=[multilevel nlme]; }; psychomix = derive2 { name="psychomix"; version="1.1-3"; sha256="15lz6rh3101pxsam07zlgiryyzmf8m16mxnh1fsgdnz8bw0li9g7"; depends=[flexmix Formula lattice modeltools psychotools]; }; - psychotools = derive2 { name="psychotools"; version="0.4-0"; sha256="17qwlxj00i0aqwf39hwr6mmxa6jy0j6dxfrp9p1xskbgi5cnvslk"; depends=[]; }; - psychotree = derive2 { name="psychotree"; version="0.15-0"; sha256="08mq4gssrhydn106zm6xxwb1kk43hdzw6jqclx1ya0g8xfri2rrd"; depends=[Formula partykit psychotools]; }; + psychotools = derive2 { name="psychotools"; version="0.4-2"; sha256="04p5yb39c8j28q6brqsrw0dr1zvgpyzb7008v2kk3d5sncgl4dd0"; depends=[]; }; + psychotree = derive2 { name="psychotree"; version="0.15-1"; sha256="1awavyzblh4s0v15kv52sq5dpalg5p0fp7ih46jxppm1srdxsz41"; depends=[Formula partykit psychotools]; }; psyphy = derive2 { name="psyphy"; version="0.1-9"; sha256="1ndc6sy662wj2qfx7r97crlqjd8fdkfvfy59qmf34bcbzbg33riz"; depends=[]; }; - psytabs = derive2 { name="psytabs"; version="0.5"; sha256="0jcsv771ndf0fv76982rbv099ii4l55a8bj1mhgr54838ins0gg7"; depends=[lavaan mokken plyr psych R2HTML rtf semTools]; }; + psytabs = derive2 { name="psytabs"; version="1.0"; sha256="0dgp5h0jxmqbkkjvd39w1ds9hcggd27fc7pfarwa3iivphf35dim"; depends=[lavaan mokken plyr psych R2HTML rtf]; }; + ptest = derive2 { name="ptest"; version="1.0-8"; sha256="1d30a23yknf7xgqj8adgr36pnh9dpffl1v5fq682f26fk3ss30qp"; depends=[quantreg]; }; ptinpoly = derive2 { name="ptinpoly"; version="2.4"; sha256="1jbj8z7lqg7w1mqdh230qjaydx2yb6ffgkc39k7dx8xl30g00i5b"; depends=[misc3d]; }; + ptstem = derive2 { name="ptstem"; version="0.0.3"; sha256="0dasfqkrd5dkqr1wbg56qrpkyjcb0lcdfcgz5mbxbhs478gf0nwj"; depends=[dplyr hunspell magrittr rslp SnowballC stringr tidyr tokenizers]; }; ptw = derive2 { name="ptw"; version="1.9-11"; sha256="0vh5xv26l27pbx1g9xrj4vcv2bv75cjxs3zf5zcalrnga2lhbdjw"; depends=[nloptr]; }; + ptwikiwords = derive2 { name="ptwikiwords"; version="0.0.3"; sha256="129dad1vy52sf97dqrkwa49vjhv2kvs4pmd5zvq8pxd51hqm6wy9"; depends=[]; }; ptycho = derive2 { name="ptycho"; version="1.1-4"; sha256="1llk3rpk0lf80vwvs23d6dqhgyic3a6sfjc393csj69hh01nrdvc"; depends=[coda plyr reshape2]; }; - pubmed_mineR = derive2 { name="pubmed.mineR"; version="1.0.5"; sha256="0993sx2zhrjl9maqrapl3hmy4g4gfm0m1x1vasi4rfdb5rqk5387"; depends=[boot R2HTML RCurl XML]; }; - pubprint = derive2 { name="pubprint"; version="0.1.1"; sha256="0zfbl5xmn0f5dwh8wanvnwfdswjjv9vjnhkfjlsymmwchkxm6b1j"; depends=[stringr]; }; - pullword = derive2 { name="pullword"; version="0.1"; sha256="1mxv63q2nfnhxcn8m17d40w792l1i7diykg6h0i42pj0rsa4ww36"; depends=[RCurl]; }; - pumilioR = derive2 { name="pumilioR"; version="1.3"; sha256="1zmcdp978p73bh9fdshxlrzgfg18j007xgxgr439rq90bwiwva6j"; depends=[RCurl XML]; }; - purge = derive2 { name="purge"; version="0.2.0"; sha256="1kv65as811x53jwg8b26cf9mhhicyn8ncnlsbd9zc0qlg61h00q2"; depends=[]; }; - purrr = derive2 { name="purrr"; version="0.2.1"; sha256="01pms115c0jjb5gsm1l3bxj116cqm8g3zkgn020l384nbmdafzsr"; depends=[BH dplyr lazyeval magrittr Rcpp]; }; - pushoverr = derive2 { name="pushoverr"; version="0.1.4"; sha256="1qa7cajgri3dwlvbpwn244m92n3q3apl4m5420mzsa9ngnmm8hj1"; depends=[httr]; }; - pvar = derive2 { name="pvar"; version="2.2"; sha256="1f58czx14shd02ijyxhn46yrvfh44wrpifja8cjv522gbkrcr7yf"; depends=[Rcpp]; }; + pubmed_mineR = derive2 { name="pubmed.mineR"; version="1.0.8"; sha256="0vr7r63i7xq6iqik4zdxjf78pfmsppnp4d9lmc6p1c19l9fcgljy"; depends=[boot R2HTML RCurl XML]; }; + pubprint = derive2 { name="pubprint"; version="0.2.1"; sha256="0lcav93i4lw0j491q8ga47iyski2kvmqvppq0jwa3144zfb3hnic"; depends=[stringr]; }; + pullword = derive2 { name="pullword"; version="0.2"; sha256="14rln0nbd4k2cvf18iwvc56776b9g3m3cs67i7fgzabfrgj8y6db"; depends=[RCurl]; }; + pulsar = derive2 { name="pulsar"; version="0.2.5"; sha256="1qmyhj32dygnvqvjysvlhlxv9y8lyfnm8hzaycmh8g3lhymk2k9c"; depends=[Matrix]; }; + pumilioR = derive2 { name="pumilioR"; version="1.3.1"; sha256="1791r5lkr6hafd2rz9f9nfy5vc03c4833f292khvd2cg43sb0bfc"; depends=[RCurl XML]; }; + purge = derive2 { name="purge"; version="0.2.1"; sha256="1faf8mkaxsnj63wnig5rs50hd3j6vzaj0xkdz8kn0j7y2vvshp9p"; depends=[]; }; + purrr = derive2 { name="purrr"; version="0.2.2"; sha256="0lss8q733nv7s154wargm6vnxq55qygnxakib8xdj4jv0y86sxc3"; depends=[BH dplyr lazyeval magrittr Rcpp]; }; + pushoverr = derive2 { name="pushoverr"; version="1.0.0"; sha256="1zazrx0szx21ymn7zlkfqkhid0ar8jblnpnf5nycj0p7dbh6d0bd"; depends=[assertthat httr]; }; + pvar = derive2 { name="pvar"; version="2.2.2"; sha256="0a84nap9rwlfvhi4yj6mh7wrmzsi06w1zpmshw84lkm2h2ch02gy"; depends=[Rcpp]; }; pvclass = derive2 { name="pvclass"; version="1.3"; sha256="1mlzvcbv1zvciz3hp01pwwanq3q8bapgn2dl90syhj15q5pzb4f7"; depends=[Matrix]; }; pvclust = derive2 { name="pvclust"; version="2.0-0"; sha256="0hfpf257k5f1w59m0zq6sk0gaamflc3ldkw6qzbpyc4j94hiaihs"; depends=[]; }; - pvrank = derive2 { name="pvrank"; version="1.1"; sha256="12yqnhh1y7sz3pb40736vrhhyza12h8iffjm7f9mimnjzpmi5k8i"; depends=[EnvStats Rmpfr]; }; + pvrank = derive2 { name="pvrank"; version="1.1.1"; sha256="07pk7xvvg51i30kzf0cyj6qa38gmdf32c2c2ljbhp95ldk4j07mi"; depends=[EnvStats Rmpfr]; }; pvsR = derive2 { name="pvsR"; version="0.3"; sha256="1ijmqlcsc8z0aphdd3j37ci8yqsy50wnr2fwn7h8fxbyd12ax2nj"; depends=[httr nnet XML]; }; pweight = derive2 { name="pweight"; version="0.0.1"; sha256="0pxxfrap1bmnhbfbmkddfbqwkpw42hq37s0y26zmkxqlx4wblira"; depends=[qqman]; }; - pwr = derive2 { name="pwr"; version="1.1-3"; sha256="0ng0n5qn9im9fdpyv2i2g80kzfa7dk3knfjf4xdpypfdw2gjrf02"; depends=[]; }; + pwr = derive2 { name="pwr"; version="1.2-0"; sha256="1zpyd8ij93w0c27v4i68y869sj8hw30prppaxq0iprgf3d72qf6r"; depends=[]; }; pwrRasch = derive2 { name="pwrRasch"; version="0.1-2"; sha256="13fr4yfk8aky1vv36pllx673l4lg9q7i661vbyn2zabyizd2rw3b"; depends=[]; }; pwt = derive2 { name="pwt"; version="7.1-1"; sha256="0926viwmwldmzlzbnjfijh00wrhgb0h4h0mlrls71pi5pjfldifa"; depends=[]; }; - pwt8 = derive2 { name="pwt8"; version="8.1-0"; sha256="0jvskkn3c4m2lfxm9ivm8g96kcd7ynlmjpjqbrd6sqivas0z46r2"; depends=[]; }; - pxR = derive2 { name="pxR"; version="0.40.0"; sha256="08s62kzdgak7mjzyhd32qn93q5l7sj01vhsk7fjg9nxjvm78xxka"; depends=[plyr reshape2 RJSONIO stringr]; }; - pxweb = derive2 { name="pxweb"; version="0.6.0"; sha256="0jxw70wm6rla2v4k6aqzbj6kmxbdj8rqhshmsgmm9vqhpwj2mvkd"; depends=[data_table httr plyr RJSONIO stringr]; }; + pwt8 = derive2 { name="pwt8"; version="8.1-1"; sha256="1iig0x90ilzh3hdki0h33qgrra8r94rw4bk1x8y7i6c1may8y0v6"; depends=[]; }; + pwt9 = derive2 { name="pwt9"; version="9.0-0"; sha256="1y8zildqnagrp8vf6d8ips0896yp0qcvwy600yv1bqdnglvmn62b"; depends=[]; }; + pxR = derive2 { name="pxR"; version="0.42.2"; sha256="1q1xwsrs1ch1a1d1clz6sl7vnsyz5wjqivczk5n5d772y4w60bz5"; depends=[plyr reshape2 RJSONIO stringr]; }; + pxweb = derive2 { name="pxweb"; version="0.6.3"; sha256="106nb0a3v295cam8ixhdwpgjhwq8p71c2z5c49s6xnqwmf6rbd0h"; depends=[data_table httr plyr RJSONIO stringr]; }; pycno = derive2 { name="pycno"; version="1.2"; sha256="0ha5css95xb98dq6qk98gnp1al32gy6w5fkz74255vs4hmkwfzw2"; depends=[maptools rgeos sp]; }; pyramid = derive2 { name="pyramid"; version="1.4"; sha256="0hh0hmckicl0r2r9zlf693j65jr9jgmiz643j2asp57nbs99lgxz"; depends=[]; }; - pystr = derive2 { name="pystr"; version="1.0.0"; sha256="1my0prvil8l2lqc9x8qi0j1zfzxl0ism5v2581himp5n5bcv8gkk"; depends=[]; }; + pystr = derive2 { name="pystr"; version="2.0.0"; sha256="08a20ii7h97qvyzqndbf3rdmnyr04g8h9lrs6qw193p1p41dl94w"; depends=[Rcpp]; }; qLearn = derive2 { name="qLearn"; version="1.0"; sha256="1ilxmgazm8gjz8c1hhbp4fccibnvnalxrag8b0rn081zsqmhf094"; depends=[]; }; qPCR_CT = derive2 { name="qPCR.CT"; version="1.1"; sha256="19j41fsd2m7p2nxi2h2mj43rjxx6sz2jpf4sk0bfvl1gyj0iz3hi"; depends=[RColorBrewer]; }; qVarSel = derive2 { name="qVarSel"; version="1.0"; sha256="13x2hnqjsm0ifzmqkkl9ilhykrh80q04lhlkkp06hkysmh5w9rkx"; depends=[lpSolveAPI Rcpp]; }; qap = derive2 { name="qap"; version="0.1-0"; sha256="0fc6c3pzlm79nqs9qkngs8m0y8y9syhgilfsav9bbi6ylfhlmdh0"; depends=[]; }; + qat = derive2 { name="qat"; version="0.74"; sha256="04n1jnbkf9dzafjh1n5d4q9p7hvyhnr63nmgl51jqxcf3nan5rlx"; depends=[boot fields gdata gplots moments ncdf4 XML]; }; qcc = derive2 { name="qcc"; version="2.6"; sha256="0bsdgpsqvkz2w1qanxwx8kvrpkpzs9jgw8ml2lyqhmhqbxyg125r"; depends=[MASS]; }; qclust = derive2 { name="qclust"; version="1.0"; sha256="0cxkk4lybpawyqmy5j6kkpgm0zy0gyn3brc1mf9jv8gmkl941cp3"; depends=[mclust mvtnorm]; }; - qcr = derive2 { name="qcr"; version="0.1-18"; sha256="16dfda3rwivsdhp7j5izzbk2rzwfabfmxgpq4kjc4h7r90n2vly2"; depends=[qcc]; }; - qdap = derive2 { name="qdap"; version="2.2.4"; sha256="193jzm87qb4ivs325xg6wnrm19izdl06hlmkcp3m2bxp9wnmdqs1"; depends=[chron dplyr gdata gender ggplot2 gridExtra igraph NLP openNLP plotrix qdapDictionaries qdapRegex qdapTools RColorBrewer RCurl reports reshape2 scales stringdist tidyr tm venneuler wordcloud xlsx XML]; }; + qcr = derive2 { name="qcr"; version="1.0"; sha256="1251naica44kccmikyzdi3ncxfmvyqbc4qspfqnc0w54cqpsy5rw"; depends=[fda_usc MASS mvtnorm qcc qualityTools]; }; + qdap = derive2 { name="qdap"; version="2.2.5"; sha256="13isxmi9vknl5c71434r16j301i86zpbzcqch8hiay51x3wbf2f0"; depends=[chron dplyr gdata gender ggplot2 gridExtra igraph NLP openNLP plotrix qdapDictionaries qdapRegex qdapTools RColorBrewer RCurl reports reshape2 scales stringdist tidyr tm venneuler wordcloud xlsx XML]; }; qdapDictionaries = derive2 { name="qdapDictionaries"; version="1.0.6"; sha256="1icivvsi33494ycd7vfqm9zx2g2rc1m3dygs3bi0ndi798z1cvx2"; depends=[]; }; qdapRegex = derive2 { name="qdapRegex"; version="0.6.0"; sha256="0k6n3zr07ccr9xlmkyg6m0pp7plh91066b61zrn7jphgs0d31c0a"; depends=[stringi]; }; qdapTools = derive2 { name="qdapTools"; version="1.3.1"; sha256="0sfzqmds888r599mwm7j0qjsqfv6z59p4apmmg36hsyaxmw51233"; depends=[chron data_table RCurl XML]; }; qdm = derive2 { name="qdm"; version="0.1-0"; sha256="0cfxyy8s5zfb7867f9xv9scq9blq2qnw68x66m7y7nqlrrff5xdr"; depends=[]; }; - qgraph = derive2 { name="qgraph"; version="1.3.2"; sha256="0bziwpdqgx1pmj61jn7ydri0zfmphf77lxhgm873cllb4czgrl74"; depends=[colorspace corpcor d3Network ellipse fdrtool ggm ggplot2 glasso gtools Hmisc huge igraph jpeg lavaan Matrix plyr png psych reshape2 sem sna]; }; + qfasar = derive2 { name="qfasar"; version="1.2.0"; sha256="067wnwwz8s0yxig13wrjq37w62kf8p5pa8my5lfpc1ik1b7iysby"; depends=[Rsolnp]; }; + qgraph = derive2 { name="qgraph"; version="1.4.2"; sha256="1pp3dwrmp7j4rv0djbypnwjb26gji5fhqw4iwqbnxyi86m47z7z7"; depends=[colorspace corpcor d3Network ellipse fdrtool ggm ggplot2 glasso gtools Hmisc huge igraph jpeg lavaan Matrix plyr png psych reshape2 sem sna]; }; qgtools = derive2 { name="qgtools"; version="1.0"; sha256="0irqfaj2qqx7n1jfc0kmfpgzqrhwwlj0qizsmya94zk9d27bcpn5"; depends=[MASS Matrix]; }; - qicharts = derive2 { name="qicharts"; version="0.5.0"; sha256="09wxw995hxfb8235pi532q3gclmyidh8m6arfszyrd6hbkf0bjv5"; depends=[ggplot2 ggrepel lattice latticeExtra scales]; }; + qha = derive2 { name="qha"; version="0.0.8"; sha256="0sdf6g6884wn73i237xkwszg2mq8xddhvyy225qzpplh5za4pnhl"; depends=[ade4 FactoClass FactoMineR]; }; + qicharts = derive2 { name="qicharts"; version="0.5.3"; sha256="1mqlj8350i7llp76qhpzzisd6vryrnx9wmdazj7xbdg5666qdz45"; depends=[ggplot2 ggrepel lattice latticeExtra scales]; }; qiimer = derive2 { name="qiimer"; version="0.9.4"; sha256="0argspi9pin2gjsg0qkl28hj3bw8svfab1cy410zlq76qdnmg7df"; depends=[pheatmap]; }; + qiitr = derive2 { name="qiitr"; version="0.1.0"; sha256="1p0mcwgzvbib20l05wrnshkqx99vwr69dgy15dfwp75skyy5l797"; depends=[httr jsonlite purrr rstudioapi]; }; qlcData = derive2 { name="qlcData"; version="0.1.0"; sha256="00xfr7dywvadyhs2z32za06fzdzmm20sn31grin0b3xw5qndai0f"; depends=[stringi yaml]; }; qlcMatrix = derive2 { name="qlcMatrix"; version="0.9.5"; sha256="0fm49iydbjp264h9mkk8qfblbvg4l3bfcnphxyhcv3n27m0w44sf"; depends=[Matrix slam]; }; qlcVisualize = derive2 { name="qlcVisualize"; version="0.1.0"; sha256="13rc4z7rz7vngrkxq09flhszvcbg6i7drdkdp8kmvgcxf0im6lv0"; depends=[alphahull fields mapdata mapplots maps maptools MASS qlcMatrix raster seriation sp spatstat]; }; - qmap = derive2 { name="qmap"; version="1.0-3"; sha256="1c7qvmd5whi446nzssqvhz1j2mpx22nlzzdrcql84v18ry0dr18m"; depends=[fitdistrplus]; }; - qmethod = derive2 { name="qmethod"; version="1.4.1"; sha256="0m52xq903v91mw2aqqnvqivlgs39zmcy274ph5zgj3gsz71sq1l4"; depends=[digest GPArotation knitr MCMCpack psych xtable]; }; + qmap = derive2 { name="qmap"; version="1.0-4"; sha256="02xvq1mw83gln7phacbi3vhkvb100crggbldv13mhwq3wjnmg5k2"; depends=[fitdistrplus]; }; + qmethod = derive2 { name="qmethod"; version="1.5"; sha256="1j2i3m55vvs6l9fc8sdnp84a5yndcihz8sz49a7gd6sarr55ily4"; depends=[digest GPArotation knitr psych xtable]; }; qmrparser = derive2 { name="qmrparser"; version="0.1.5"; sha256="0sl9n42j0dx9jqz5vv029ra6dyrg9v7mvdlya8ps3vyd6fjhwh0z"; depends=[]; }; qpcR = derive2 { name="qpcR"; version="1.4-0"; sha256="029qhncfiicb3picay5yd42g6qi0x981r6mgd67vdx71cac9fp59"; depends=[MASS Matrix minpack_lm rgl robustbase]; }; qqman = derive2 { name="qqman"; version="0.1.2"; sha256="024ln79hig5ggcyc3466r6y6zx2hwy2698x65cha5zpm51kq1abs"; depends=[]; }; qqtest = derive2 { name="qqtest"; version="1.1.1"; sha256="08vfpbrgvyhv1w0gqmys9zkhfxh85sk74ig5fn12ma2p87zv7r5l"; depends=[robust]; }; + qqvases = derive2 { name="qqvases"; version="1.0.0"; sha256="1fli4v1slmnwcmzmmfw84sa4mx3xzv3im1q0plb8811sbsgmwdvl"; depends=[shiny shinythemes]; }; qrLMM = derive2 { name="qrLMM"; version="1.1"; sha256="1yg9ph6jy0sn4d82vn4v7yy3mqczbnzsq8qqp9dw38vh2456rmf2"; depends=[ghyp matrixcalc mvtnorm nlme psych quantreg]; }; - qrNLMM = derive2 { name="qrNLMM"; version="1.0"; sha256="0vlinc3bggapff29dyz14vn122gy6aq3rp38v2bpnxfkbpj10lvy"; depends=[ald ghyp matrixcalc mvtnorm psych quantreg]; }; + qrNLMM = derive2 { name="qrNLMM"; version="1.3"; sha256="046xzzyrjaqa8sa7pxf4mhi1q5pdhvsn5z8gid0cypb0z140ia85"; depends=[ald ghyp matrixcalc mvtnorm psych quantreg]; }; qrage = derive2 { name="qrage"; version="1.0"; sha256="00j74bnkcpp0h8v44jwzj67q9aaw47ajc2fvgr6dckj9rymydinl"; depends=[htmlwidgets]; }; - qrcm = derive2 { name="qrcm"; version="1.0"; sha256="0xjxb2z1h63azbs7gqvqf4a2sk9syzjqkfrvfdcmliv2bv7zf70l"; depends=[pch survival]; }; + qrcm = derive2 { name="qrcm"; version="2.0"; sha256="09awa82qvxhdif9g6w36d89wyhfm55z39dw063lasa7pp7dd3gcl"; depends=[pch survival]; }; qrcode = derive2 { name="qrcode"; version="0.1.1"; sha256="12j0db8vidlgkp0dcjyrw5mhhvazl7v7gpn9wsf2m0qnz1rm4igq"; depends=[R_utils stringr]; }; + qrencoder = derive2 { name="qrencoder"; version="0.1.0"; sha256="1lg60lg2fiqdw0m228i8pln2p0kqp9f21qmrx6r6rwxifvwlfhv8"; depends=[base64enc png raster Rcpp]; }; qrfactor = derive2 { name="qrfactor"; version="1.4"; sha256="0f02lh8zrc36slwqy11x03yzfdy94p1lk5jar9h5cwa1dvi5k8gm"; depends=[cluster maptools mgraph mvoutlier pvclust]; }; qrjoint = derive2 { name="qrjoint"; version="1.0-0"; sha256="18jmxb5wv16gy4vf0cgp4x885s53i3z3qmc46bdr4md513mc980w"; depends=[coda kernlab Matrix quantreg]; }; - qrmtools = derive2 { name="qrmtools"; version="0.0-5"; sha256="0p245mh7qwv1fm9wi7wk2jm9pdy7r6jkhnqvcpzf6cnhcl0s6hs5"; depends=[Quandl quantmod zoo]; }; - qrng = derive2 { name="qrng"; version="0.0-2"; sha256="0rs4dggvrlc3bi0wgkjw8lhv4b3jpckcfkqzsaz0j46kf6vfgfw1"; depends=[]; }; + qrmdata = derive2 { name="qrmdata"; version="2016-01-03-1"; sha256="192dcsmvl3xbzlk658cfp2sk5fkgbjhjd4g1mrcs8s63hmzbwdzc"; depends=[xts]; }; + qrmtools = derive2 { name="qrmtools"; version="0.0-6"; sha256="14127svars3f7682mmbmqy0m51xs6syzcrki1mpjf9j1qv2s3jhf"; depends=[lattice Quandl quantmod rugarch xts zoo]; }; + qrng = derive2 { name="qrng"; version="0.0-3"; sha256="0xdhmcqvgjmrf4c72x76yz5kp0jiysy8q6f67lix1h4mvzr4q2qd"; depends=[]; }; qrnn = derive2 { name="qrnn"; version="1.1.3"; sha256="0phbazi47pzhvg7k3az958rk5dv7nk2wvbxqsanppxsvyxl0ykwf"; depends=[]; }; qtbase = derive2 { name="qtbase"; version="1.0.11"; sha256="01fx8yabvk2rsb0mdx9f59a9qf981sl88s56iy58w5dd6r2ag6gc"; depends=[]; }; qte = derive2 { name="qte"; version="1.0.1"; sha256="15y6n0c9jinfz7hmm107palgy8fl15bc71gw0bcd3bawpydkrq2w"; depends=[]; }; - qtl = derive2 { name="qtl"; version="1.39-5"; sha256="1grwgvyv7x0dgay1858bg7qf4wk47gpnq7qkqpcda9cn0h970d6f"; depends=[]; }; + qtl = derive2 { name="qtl"; version="1.40-8"; sha256="05bj1x2ry0i7yqiydlswb3d2h4pxg70z8w1072az1mrv1m54k8sp"; depends=[]; }; qtlDesign = derive2 { name="qtlDesign"; version="0.941"; sha256="138yi85i5xiaqrns4v2hw46b731bdgnb301wg2h4cfrxvrw4l0d5"; depends=[]; }; - qtlbook = derive2 { name="qtlbook"; version="0.18-3"; sha256="0b0kv5nipdavify4vslwhq9p7nmhwk71q3xmnkj66b780605mvr6"; depends=[qtl]; }; + qtlbook = derive2 { name="qtlbook"; version="0.18-5"; sha256="0qvfi8q92n9pa3zbinkk54404m0awhxla9ccflczgaq0vij2n7wf"; depends=[qtl]; }; qtlc = derive2 { name="qtlc"; version="1.0"; sha256="17ij4alx4qg556b5kq7qsjygj5jf8iyx1f0v52pvx1z2sm6nppww"; depends=[plot3D rgl tiff]; }; - qtlcharts = derive2 { name="qtlcharts"; version="0.5-25"; sha256="132v2cqi23m1pb7yz7859snsxjj7dmv6gpv5p9lzb5dpa2n8aha6"; depends=[htmlwidgets jsonlite qtl]; }; + qtlcharts = derive2 { name="qtlcharts"; version="0.7-8"; sha256="144f2v97d60z381cnwmbpizig548cw29cqz5csqrk3vrr7j59l99"; depends=[htmlwidgets qtl]; }; qtlhot = derive2 { name="qtlhot"; version="0.9.0"; sha256="1043rksqqzgmr7q03j18wxgm706prqxq9ki9b9p2dxvc62vfcfih"; depends=[corpcor lattice mnormt qtl]; }; qtlmt = derive2 { name="qtlmt"; version="0.1-4"; sha256="1kx4iajhnjilciz9vda0s1mxqxa0h69vm3gpwdpbghgc5cj8d8kh"; depends=[]; }; qtlnet = derive2 { name="qtlnet"; version="1.3.6"; sha256="044a2p3mpp203kb85s2fr3qiyypm461lrzxkfi0hnzq44qqba169"; depends=[graph igraph pcalg qtl sem]; }; qtpaint = derive2 { name="qtpaint"; version="0.9.1"; sha256="08x7qcxwkaclwv1p4s9a5k95x35hzp69whiihkakjv5blm83m3g9"; depends=[qtbase]; }; qtutils = derive2 { name="qtutils"; version="0.1-3"; sha256="018k9v3mab1mfcjh4mv1a1iish50fwdhb51mqn17k6fyrrrv7vs5"; depends=[qtbase]; }; quad = derive2 { name="quad"; version="1.0"; sha256="0fak12l19f260k0ygh6zimx8dabzsv7a9i2njw8hnfcs3ndffhv5"; depends=[PearsonDS]; }; + quadmesh = derive2 { name="quadmesh"; version="0.1.0"; sha256="1k1midhszmi843krv9sdwbyhjmffgps0xx9aigkp7yw7mpif07vx"; depends=[dplyr raster]; }; quadprog = derive2 { name="quadprog"; version="1.5-5"; sha256="0jg3r6abmhp8r9vkbhpx9ldjfw6vyl1m4c5vwlyjhk1mi03656fr"; depends=[]; }; quadrupen = derive2 { name="quadrupen"; version="0.2-4"; sha256="0gs565zi5qkccr9f65smvzgq2d97p7i5inksp2492bjvqhsbagxj"; depends=[ggplot2 Matrix Rcpp RcppArmadillo reshape2 scales]; }; qualCI = derive2 { name="qualCI"; version="0.1"; sha256="09mzsy5ryyrn1gz9ahrh95cpfk7g09pmjjy0m82fh4xc7j5w6kpf"; depends=[combinat]; }; qualV = derive2 { name="qualV"; version="0.3-2"; sha256="16pjn2la4da9466rafl5drlzx2rcf3vy68b5wz27aacyr15nvdcb"; depends=[KernSmooth]; }; qualityTools = derive2 { name="qualityTools"; version="1.55"; sha256="1c2p78dhwqvzb2k01dvwb41a6hlr2iwpw6fv91036x30rphjzb88"; depends=[MASS Rsolnp]; }; + qualpalr = derive2 { name="qualpalr"; version="0.3.1"; sha256="0qfdhzlr4l68a0pwvc58kdh0n5hj7lx7vjkqrq75nbz2b2ycksd3"; depends=[assertthat randtoolbox Rcpp RcppArmadillo RcppParallel]; }; + qualtRics = derive2 { name="qualtRics"; version="0.3"; sha256="1w2rbp3wxxp7yazf00wdjzm4d632n5iwdfcq1fsam5h0srrn18bz"; depends=[httr jsonlite stringr XML]; }; qualvar = derive2 { name="qualvar"; version="0.1.0"; sha256="07vpq5nyh40y1sq1fsg97z7bbardqakq6bx635v42pv00480h9sh"; depends=[]; }; - quantable = derive2 { name="quantable"; version="0.1"; sha256="0q1m971fk9i2qdyps745g89x34anw0g2hxqf5p8ggfvvr32k635r"; depends=[gplots RColorBrewer scales]; }; + quantable = derive2 { name="quantable"; version="0.2.2"; sha256="179bqqrga8mpigchfmhf11sc75frhd9nd6yqclz85lnd6gl16yd7"; depends=[caret e1071 gplots Matrix pROC RColorBrewer scales]; }; quantchem = derive2 { name="quantchem"; version="0.13"; sha256="1ga5xa7lsk04flfp1syjzpnvj3i2ypzh1m49vq1xkdwpm6axdy8n"; depends=[MASS outliers]; }; - quanteda = derive2 { name="quanteda"; version="0.9.4"; sha256="1mmhs4f2ps6fa66pszmbj828mi5ypaa8nlwbw5fv0kh0vqfy83kf"; depends=[ca data_table Matrix proxy Rcpp RcppArmadillo SnowballC stringi wordcloud]; }; - quantification = derive2 { name="quantification"; version="0.1.0"; sha256="0987389rr21fl3khgd3a1yq5821hljwm0xlyxgjy1km5hj81diap"; depends=[car]; }; + quanteda = derive2 { name="quanteda"; version="0.9.9-24"; sha256="0wh7b3yj8qlgygy85sl98pf0inv9vxkd32k56k97bdiajz61cbmk"; depends=[ca data_table fastmatch ggplot2 Matrix proxy Rcpp RcppArmadillo RcppParallel SnowballC stringi wordcloud yaml]; }; + quantification = derive2 { name="quantification"; version="0.2.0"; sha256="116cp88q9cmizxc2a8lsysa1vwyp1y86457fx5qkq5dcm4g721g8"; depends=[car]; }; quantileDA = derive2 { name="quantileDA"; version="1.1"; sha256="0jbklxsy33j7clcw97qq4ijwkrb94v2m11gjcfa38vplfxm9913q"; depends=[]; }; - quantmod = derive2 { name="quantmod"; version="0.4-5"; sha256="14y8xra36cg5zam2cmxzvkb8n2jafdpc8hhjv9xnwa91basrx267"; depends=[TTR xts zoo]; }; - quantreg = derive2 { name="quantreg"; version="5.21"; sha256="1cx1axadmd768m6hg4hgnnihyphkrxlmj2dg04k91466wypbxh6l"; depends=[Matrix MatrixModels SparseM]; }; - quantregForest = derive2 { name="quantregForest"; version="1.2"; sha256="0bgqdmicz0diffgb6hcqm7zgxckjrp5gpph2hnxsicsv8qfr6jsm"; depends=[randomForest]; }; - quantregGrowth = derive2 { name="quantregGrowth"; version="0.3-1"; sha256="0cm4ac9rn5vhqhi7f5qiilym1vp7x6bglwghw22b70nf9zvcap9h"; depends=[quantreg]; }; - quantspec = derive2 { name="quantspec"; version="1.2-0"; sha256="029k1klbcvwprvjggrm0i1hzpybw05r4bsm0awcyjzzrgd8hdmp9"; depends=[abind quantreg Rcpp snowfall zoo]; }; + quantmod = derive2 { name="quantmod"; version="0.4-7"; sha256="16iqpavdslhb1fdpvnxdd3awq9b0rj16mravg9nq8brqb6z3p2x2"; depends=[TTR xts zoo]; }; + quantreg = derive2 { name="quantreg"; version="5.29"; sha256="098gy8xv9kcl5y0cm93b8chr5sm6crrdxi20bkx9lmwmybl3himv"; depends=[Matrix MatrixModels SparseM]; }; + quantreg_nonpar = derive2 { name="quantreg.nonpar"; version="1.0"; sha256="1f9120awnkwsgdiqg98lg7xs5l4y80930869x6k9q76595r5m92k"; depends=[fda mnormt quantreg Rearrangement]; }; + quantregForest = derive2 { name="quantregForest"; version="1.3-5"; sha256="0yckbz8bk7zlg787a0q70x5k1y4z1nj4difavimgs4s5ac6nbajd"; depends=[randomForest RColorBrewer]; }; + quantregGrowth = derive2 { name="quantregGrowth"; version="0.3-2"; sha256="1ga3qn8g7r465dlxl8wmvz1vlpq5639kmawancsgkm77f316wpzf"; depends=[quantreg]; }; + quantspec = derive2 { name="quantspec"; version="1.2-1"; sha256="0kvwifdwy3big0lls5h3wcb48v3jvlfp1l0zjd07jnvj43zj3ysd"; depends=[abind quantreg Rcpp snowfall zoo]; }; + quarrint = derive2 { name="quarrint"; version="1.0.0"; sha256="13fdmmrgn23xd9vpywmcl7pf729gmcxjfl1wxs30axsbp4h1s6rk"; depends=[neuralnet]; }; questionr = derive2 { name="questionr"; version="0.5"; sha256="1n3qv4ynddhhh0h9n0v21y7dq7mq5rmg0qqh3spxgrj0acrnqzhp"; depends=[classInt highr htmltools miniUI rstudioapi shiny]; }; - queueing = derive2 { name="queueing"; version="0.2.6"; sha256="0w6fnjql9ap5vlhiv6syphrkhnp4qp7f4clw2jn155vqqmj5ii6a"; depends=[]; }; - quickReg = derive2 { name="quickReg"; version="0.0.1"; sha256="0lnbhqx7kf1hc7xa6ikk2khqrngqg22rph9zkj6z8f7zlsbpspxh"; depends=[ggplot2 psych survival]; }; - quickmapr = derive2 { name="quickmapr"; version="0.1.1"; sha256="0wqkn8svpi6m9f04kl0vivg2j9ydhq488a9m36s7br7n4zyvc5vm"; depends=[httr raster rgdal rgeos sp]; }; - quickpsy = derive2 { name="quickpsy"; version="0.1.2"; sha256="0nvx7zcmfpfsr94k0wdmpcyyqjwilx8ciy12l8s22y9psz5ripsz"; depends=[boot DEoptim dplyr ggplot2 MPDiR tidyr]; }; - quint = derive2 { name="quint"; version="1.0"; sha256="19dxrssy4dw7v3s4hhhy6yilbc7zb6pvcnh3mm1z6vv5a1wfr245"; depends=[Formula partykit rpart]; }; + queuecomputer = derive2 { name="queuecomputer"; version="0.6.1"; sha256="171fgmb5xz653fh9lr3p562g5ap9072a546r8kan5b6msmnh6adk"; depends=[dplyr Rcpp RcppArmadillo]; }; + queueing = derive2 { name="queueing"; version="0.2.8"; sha256="08wcb58rp9g85cigm0zn0ba4xgihi4283w3sr4b16lv67sgld4p6"; depends=[]; }; + quhomology = derive2 { name="quhomology"; version="1.1.0"; sha256="0acglmjp4x8f81iysxp8x7v5279p8gdidj308b9spn6xbmqgbr8z"; depends=[MASS numbers]; }; + quickReg = derive2 { name="quickReg"; version="1.0.0"; sha256="0dgs0ja2srivrbzl11d3al45ncnrlx7940sk0h8c6lnnxv7nz77k"; depends=[ggplot2 nortest psych survival]; }; + quickmapr = derive2 { name="quickmapr"; version="0.2.0"; sha256="1hxcq4h1rgdmypn3kgmwppzhacyspcj7iv2sy7s2xx5y69x62hf1"; depends=[httr raster rgdal rgeos sp]; }; + quickpsy = derive2 { name="quickpsy"; version="0.1.4"; sha256="0zvi5g43dj1a3f6nysw9gc9nnhm0z5h6sfka4ggwr14fw6k0gz3l"; depends=[DEoptim dplyr ggplot2 MPDiR]; }; + quint = derive2 { name="quint"; version="1.2.1"; sha256="1d9dnrjnl9cg2yn5snr6x9qr6lf74639j3ymsxpw0wn5c4fm8z46"; depends=[Formula partykit rpart]; }; quipu = derive2 { name="quipu"; version="1.9.0"; sha256="1py1qpbwp2smr5di8b3zmzxxhchfmr5qfhqkdiqig28mcnqcmp5n"; depends=[agricolae pixmap shiny stringr xtable]; }; - qut = derive2 { name="qut"; version="1.0.1"; sha256="174zwwznfrpzzqfigzlr39y5gq6xsb8n3h8w6idx52y6psnag22z"; depends=[glmnet lars Matrix]; }; - qvcalc = derive2 { name="qvcalc"; version="0.8-9"; sha256="1ysbsm65n05vypvvpsbdfbrb60gij50vsmybzi4405g5z2ds1j72"; depends=[]; }; - qwraps2 = derive2 { name="qwraps2"; version="0.1.2"; sha256="1xr3bcigaxb72bk90xv0spd6l4d3l8wlpzvf3gnj2r9rqmr867zv"; depends=[dplyr ggplot2 knitr]; }; - r_jive = derive2 { name="r.jive"; version="1.2"; sha256="16g0r527c90j4xcyj8fjb8nq2n2bxkjl56wb57mkhvvcgy15r55f"; depends=[gplots SpatioTemporal]; }; + qut = derive2 { name="qut"; version="1.1"; sha256="0d9gap5jp69y9r7zip4r1kp79lq2wfrxpjka225pxjgj59rj3xls"; depends=[flare glmnet lars Matrix]; }; + qvcalc = derive2 { name="qvcalc"; version="0.9-0"; sha256="0gccxl6l6ibffxkjzfmh2scm8f3bnqwm1hr7ss7dqshhxw21kd5c"; depends=[]; }; + qwraps2 = derive2 { name="qwraps2"; version="0.2.4"; sha256="18ail1y3kpiiwgkf7zn1acfz1ipz7wbk8pcmlganayr8p9yv7sh2"; depends=[dplyr ggplot2 knitr Rcpp tidyr]; }; + r_jive = derive2 { name="r.jive"; version="1.7"; sha256="051kd6ksan4bw3z9w6p22h0sqn6y6dyadcxkibgyi8pz5xp6qypx"; depends=[gplots SpatioTemporal]; }; r2d2 = derive2 { name="r2d2"; version="1.0-0"; sha256="1zl0b36kx49ymfks8rm33hh0z460y3cz6189zqaf0kblg3a32nsi"; depends=[KernSmooth MASS sp]; }; r2dRue = derive2 { name="r2dRue"; version="1.0.4"; sha256="1apdq7zj5fhs349wm9g6y06nn33x24pg3gdp4z1frd18qlacf8z5"; depends=[matrixStats rgdal sp]; }; + r2glmm = derive2 { name="r2glmm"; version="0.1.1"; sha256="0b64kia06n8l88rm63hcb8h8qha5if2h8vm8m4s5fdf5hl34dv02"; depends=[afex data_table dplyr ggplot2 gridExtra lmerTest MASS Matrix mgcv pbkrtest]; }; r2lh = derive2 { name="r2lh"; version="0.7"; sha256="1kkyjv9x2klrjnaaw4a16sxdfqmpp9s5mlclzlczlqjypbf2aa6d"; depends=[]; }; r2stl = derive2 { name="r2stl"; version="1.0.0"; sha256="18lvnxr40cm450s8qh09c3cnkl1hg83jhmv1gzsv6nkjrq4mj5wh"; depends=[]; }; r4ss = derive2 { name="r4ss"; version="1.24.0"; sha256="1kifzfg2zx6lq2c8qqbhb096z1wgdayhg5qzx5hnkwpn05w5cma3"; depends=[coda corpcor gplots gtools maps pso truncnorm]; }; rARPACK = derive2 { name="rARPACK"; version="0.11-0"; sha256="12h2y46xcfldhjdmm960swgn9b23zvkj5vg2bi42s9qxwgi02d63"; depends=[RSpectra]; }; rAltmetric = derive2 { name="rAltmetric"; version="0.6"; sha256="0ym8p9rq64ig3vlaimk38rmc2h1315bphx7v1rd6g4gypgx4ym15"; depends=[ggplot2 plyr png RCurl reshape2 RJSONIO]; }; - rAmCharts = derive2 { name="rAmCharts"; version="1.1.2"; sha256="1c9mrzi0bd2fpv2jvhabb243k2z36k6cxffgcykxi8f62rpvhmq9"; depends=[data_table htmltools htmlwidgets rlist]; }; + rAmCharts = derive2 { name="rAmCharts"; version="2.1.3"; sha256="0q02x00gvvqzrsl2m9lmmjc2xf3vf718ar0zlqnqn6rnz94lbvv3"; depends=[data_table htmltools htmlwidgets knitr pipeR yaml]; }; rAverage = derive2 { name="rAverage"; version="0.4-13"; sha256="0yfy81p99a3cb31cagxdvby7l2hcc60g3mnfizd9nvgamdmw08sy"; depends=[]; }; rAvis = derive2 { name="rAvis"; version="0.1.4"; sha256="0svplnrn8rrr59v04nr1pz7d5r4dr1kdl0bd3kg8c3azxv47mxbp"; depends=[gdata maptools raster RCurl rgdal scales scrapeR sp stringr XML]; }; + rBayesianOptimization = derive2 { name="rBayesianOptimization"; version="1.1.0"; sha256="194j445nirvvkz880ax0zw2q1mkiy0khdfjl7bwiwj8knhhvkrhw"; depends=[data_table foreach GPfit magrittr]; }; rBeta2009 = derive2 { name="rBeta2009"; version="1.0"; sha256="0ljzxlndn9ba36lh7s3k4biim2qkh2mw9c0kj22a507qbzw1vgnq"; depends=[]; }; + rCAT = derive2 { name="rCAT"; version="0.1.5"; sha256="03nbhcfgawz0a8h5fr51aqn1n9v7kprwvafxzjb2pb8751rica2d"; depends=[pracma rgdal sp]; }; rCBA = derive2 { name="rCBA"; version="0.0.1"; sha256="0mfd4jn5bcn4kqnfmycm5x7kcvll60dp1nma3l1bfj0v2hybxm5d"; depends=[arules rJava]; }; rCMA = derive2 { name="rCMA"; version="1.1"; sha256="0dswshg80hbgcib5x9w791sh71q5s4435q8sm9dh170v4ngbax0w"; depends=[]; }; rCUR = derive2 { name="rCUR"; version="1.3"; sha256="1f38xbc5n91k2y88cg0sv1z2p4g5vl7v2k1024f42f7526g2p2lx"; depends=[lattice MASS Matrix]; }; rCarto = derive2 { name="rCarto"; version="0.8"; sha256="08813l4xfahjyn0jv48q8f6sy402n78dqsg01192pxl2dfc2i9ry"; depends=[classInt maptools RColorBrewer]; }; rChoiceDialogs = derive2 { name="rChoiceDialogs"; version="1.0.6"; sha256="0lp8amdalirpsba44aa3r31xnhmi36qb9qf8f8gdxxbarpgprsbi"; depends=[rJava]; }; rClinicalCodes = derive2 { name="rClinicalCodes"; version="1.0.1"; sha256="1p4p8r2n0k8h9xdzbngb95rshjp3376f5lsx228biqmswhpkhvlf"; depends=[RCurl rjson stringr tm XML]; }; - rDEA = derive2 { name="rDEA"; version="1.2-3"; sha256="1xhrgglnidpzqwkvwnwnnpcx23il0jgfp394rsc74pwdsbv1ifz9"; depends=[maxLik slam truncnorm truncreg]; }; - rDNA = derive2 { name="rDNA"; version="1.30.1"; sha256="12h83zirv55sryc1zww97ws8kvsym1z7p7y5d4w43nam8mi3fpcd"; depends=[rJava]; }; + rDEA = derive2 { name="rDEA"; version="1.2-5"; sha256="1wsi2dkq9izvbhdqmd4qk8i277r1j38dk59fcmnxnwqvk6ar6nrb"; depends=[maxLik slam truncnorm truncreg]; }; + rDNA = derive2 { name="rDNA"; version="1.31"; sha256="051000q3wb9bjcwm3v60yfy1gpr6amvciy5sh498kl5vq7nv5wlv"; depends=[rJava]; }; + rDNAse = derive2 { name="rDNAse"; version="1.1-1"; sha256="0cl51q61kwvdsm5f49cjjbzggqam1fnr6gp15cmy6m2yahyxg1lk"; depends=[]; }; rDVR = derive2 { name="rDVR"; version="0.1.1"; sha256="19a4f9k65bd49vkn3sxkjdmcpwyawk7gwmvancvqr745gfgs0wzg"; depends=[RCurl]; }; - rEDM = derive2 { name="rEDM"; version="0.4.7"; sha256="1d1ylm5rmbrrknmc82vlbhqqkl62drs25gwqid4adflpj2gxczhz"; depends=[Rcpp]; }; + rEDM = derive2 { name="rEDM"; version="0.5.4"; sha256="1vhhc1yfswvba6qfff5y9l96g8xjw0szshzs4hd4yxh6rq1bnjlr"; depends=[Rcpp RcppEigen]; }; rEMM = derive2 { name="rEMM"; version="1.0-11"; sha256="0ynjn10gcmxs8qnh6idb34ppmki91l8sl720x70xkzcqpahy0nic"; depends=[cluster clusterGeneration igraph MASS proxy]; }; rFDSN = derive2 { name="rFDSN"; version="0.0.0"; sha256="1ffiqpdzy4ipy2aci22zkih4373ifkjkpvsrza8awhyf9fwqwdsl"; depends=[XML]; }; - rFerns = derive2 { name="rFerns"; version="2.0.0"; sha256="0mfwlypakk409p17cmj8q9g99aq8z8gzg54dhpw351ixblvnil98"; depends=[]; }; + rFSA = derive2 { name="rFSA"; version="0.1.0"; sha256="14drlivamb818dgh808h6j81ww1zlwil42whpclz7ayfddna5rg4"; depends=[]; }; + rFTRLProximal = derive2 { name="rFTRLProximal"; version="1.0.0"; sha256="1458gqy2zbaa62vaimawdr1nk0lsgwz1j4pgw21fkw7bskcszz0f"; depends=[data_table FeatureHashing foreach magrittr Matrix Rcpp RcppArmadillo RcppProgress]; }; + rFerns = derive2 { name="rFerns"; version="2.0.2"; sha256="19lwvb9aa115gc6wb5vzhmmhqgq2xxf6y83hw5y6k589prbxfq8y"; depends=[]; }; + rForest = derive2 { name="rForest"; version="0.1"; sha256="1y7gqa1333nvllngy821k655glxkb9p6rbnx9cns7dy0qdqjzx50"; depends=[alphashape3d geometry rgl sp]; }; rGammaGamma = derive2 { name="rGammaGamma"; version="1.0.12"; sha256="1051ah6q11qkxj1my4xybbzc8xcqkxfmps8mv2his5cyfllwidbs"; depends=[gsl]; }; rGroovy = derive2 { name="rGroovy"; version="1.0"; sha256="03kyw1hv1xmv580cf47gb3fzvjp27j0a93604h5hap981pzibdpy"; depends=[rJava]; }; rHealthDataGov = derive2 { name="rHealthDataGov"; version="1.0.1"; sha256="0lkjprss15yl6n9wgh79r4clip3jndly2ab1lv4iijzxnxay099d"; depends=[bit64 httr jsonlite]; }; rHpcc = derive2 { name="rHpcc"; version="1.0"; sha256="0096z90mmf1j2xpb9034a5ph52m8z6n6xjh3km2vrhw63g3cpwap"; depends=[RCurl XML]; }; + rIsing = derive2 { name="rIsing"; version="0.1.0"; sha256="1208lwfk9j8gghj8xf6i8v6s18h89ydqsd4jq3r88n403yzbzzck"; depends=[data_table Rcpp RcppEigen]; }; rJPSGCS = derive2 { name="rJPSGCS"; version="0.2-7"; sha256="1j8lc56q20b0qkl20r8mqa6q822rpfphj00dlmj50rgwk02pfc69"; depends=[chopsticks rJava]; }; rJava = derive2 { name="rJava"; version="0.9-8"; sha256="12mxajy300gyi5bsd3fn84nvj83chr8ls0mrh3mm9nhl2h1mxnns"; depends=[]; }; rJython = derive2 { name="rJython"; version="0.0-4"; sha256="13fpcw37cca738v9idqgi3gv9avfkfwfacxj54p2c4wyg46ghnah"; depends=[rJava rjson]; }; + rKIN = derive2 { name="rKIN"; version="0.1"; sha256="1j6fdi5h869q4d1hq6ha6qyhisa0zk2qmhjrc4ahl9991d680dyn"; depends=[ggplot2 maptools MASS rgeos sp]; }; + rLDCP = derive2 { name="rLDCP"; version="1.0.1"; sha256="0ldw6ybyyxhfsxbbjs8qzcf8dmha3q04h6mcxk90q1wlmlanqwf0"; depends=[XML]; }; rLTP = derive2 { name="rLTP"; version="0.1.2"; sha256="1cr0r3v7d09bss16fxls341l71i9wkg91hr2hiyr4cl5fg35zzgb"; depends=[RCurl]; }; - rLakeAnalyzer = derive2 { name="rLakeAnalyzer"; version="1.7.6"; sha256="03gdr4swy3dq6vkq4q44sdn7slgjzcqzd2pmhac4bghgzgk3zgj8"; depends=[plyr]; }; + rLakeAnalyzer = derive2 { name="rLakeAnalyzer"; version="1.8.3"; sha256="1rc8x6xqygfnr7sb2115g92djsjjjdwk5vssq3q3n9x7jzj878v5"; depends=[plyr]; }; rLiDAR = derive2 { name="rLiDAR"; version="0.1"; sha256="1zm3c3xpxk1ll0cq589k1kf69wgn93qmaqkvpgcjib0ay35q7c7f"; depends=[bitops deldir geometry plyr raster rgl sp spatstat]; }; rLindo = derive2 { name="rLindo"; version="8.0.1"; sha256="05qyc4wvpjgw8jxmwn2nwybi695fjn0cdilkprwmjg07c82f0q5n"; depends=[]; }; + rMR = derive2 { name="rMR"; version="1.0.4"; sha256="1md0xkl87qqylwh5zbx9awa5i4f573v4glgaf4k8h5ls4icaaav4"; depends=[biglm]; }; rNMF = derive2 { name="rNMF"; version="0.5.0"; sha256="1nz6h0j5ywdh48m0swmhp34hbkycd7n13rclrxaw85qi9wc42597"; depends=[knitr nnls]; }; - rNOMADS = derive2 { name="rNOMADS"; version="2.2.0"; sha256="0ihrg88rklgn4fa2b7zcs9bxfawhxgxdxlwslkh4ngcz2v72cfnp"; depends=[fields GEOmap MBA RCurl rvest scrapeR stringr XML xml2]; }; - rPlant = derive2 { name="rPlant"; version="2.12"; sha256="12aclndwijnaw14iqb2q7m5c2zh2bgdpfzmf11sgiwv5680qhdmh"; depends=[RCurl rjson seqinr]; }; + rNOMADS = derive2 { name="rNOMADS"; version="2.3.2"; sha256="1dklyda8xagg643c67ii9hx2lvwkc9xaxlkvigs9dv1bkzbrw9gs"; depends=[fields GEOmap MBA RCurl rvest scrapeR stringr XML xml2]; }; + rPlant = derive2 { name="rPlant"; version="2.16"; sha256="0bi7p8w6v8gys8rab5f0c11r0rsp14nsf4mmm2bsz8kxfprh6vdp"; depends=[RCurl rjson seqinr]; }; rPowerSampleSize = derive2 { name="rPowerSampleSize"; version="1.0.1"; sha256="0yk61ck2br81cd40yvqxrzi9s680ii26wbl0wjdam04dyf0vh1cv"; depends=[mvtnorm ssanv]; }; - rPref = derive2 { name="rPref"; version="0.7"; sha256="005qphrcwnkfi2wmm7ba0swykq17q9ab7c7khqyixb0y9gyrwing"; depends=[dplyr igraph Rcpp RcppParallel]; }; + rPref = derive2 { name="rPref"; version="1.2"; sha256="19b6rycz73rz3nxymb52gfddqsxprkxazwa8pb75vckk13q1cmj0"; depends=[dplyr igraph lazyeval Rcpp RcppParallel]; }; rPython = derive2 { name="rPython"; version="0.0-6"; sha256="1aw9jn45mw891cskr51yil60i55xv5x6akjvfdsbb9nwgdwwrqdp"; depends=[RJSONIO]; }; + rRAP = derive2 { name="rRAP"; version="1.1"; sha256="1nzvs8bjkbjraa33azxf9mrxsxh87qhh3qlldrcs5y4fq4ancyqb"; depends=[lars lassoshooting MASS]; }; + rSARP = derive2 { name="rSARP"; version="1.0.0"; sha256="0gg6qs7jgn2qvzdwbz0xyfpfzjwa2dwi0j0hal7glc5qlhrrynwl"; depends=[ggplot2 lattice qcc]; }; rSCA = derive2 { name="rSCA"; version="2.1"; sha256="1lpix8xsjzyhgksmigvqxpv2bvaka0b1q2kcvdyfrfcw713n19rw"; depends=[]; }; rSFA = derive2 { name="rSFA"; version="1.04"; sha256="0gd6ji1ynbb04rfv8jfdmp7dqnyz8pxcl5636fypd9a81fggl0gs"; depends=[MASS]; }; rSPACE = derive2 { name="rSPACE"; version="1.2.0"; sha256="1nmv8niqc34mipzhny1mlwc9v4kck02ixmm1i25cqdfhsng03dma"; depends=[ggplot2 plyr raster RMark sp tcltk2]; }; rSymPy = derive2 { name="rSymPy"; version="0.2-1.1"; sha256="1mrfpyalrq8b6yicy28jsj0xy7hlawa72imsfhabwd3hrx6ld150"; depends=[rJython]; }; rTableICC = derive2 { name="rTableICC"; version="1.0.3"; sha256="1q7xac9vfnakjp54ccqli42wi8idfb9g9crgbqyg5s726b7z50n7"; depends=[aster partitions]; }; rTensor = derive2 { name="rTensor"; version="1.3"; sha256="0ra34sn4g92r6asrn4la2wbsi2y0hnyx163wwi4v0j6f57bslhdw"; depends=[]; }; - rUnemploymentData = derive2 { name="rUnemploymentData"; version="1.0.0"; sha256="1gbmr3kcv3wv4lmr7171sd76p95nhsa104955yi7y6wd5h0hk1ba"; depends=[choroplethr rvest stringr]; }; + rUnemploymentData = derive2 { name="rUnemploymentData"; version="1.1.0"; sha256="0p5hba8iv060szp23s05hvpmwan518ykakm6vqzdcki0inxw0hyv"; depends=[choroplethr rvest stringr]; }; rWBclimate = derive2 { name="rWBclimate"; version="0.1.3"; sha256="0vs56hx7a85pw4jx8nb8bdlr9dbkl4zdhzhqsm0505xc3qz18vxh"; depends=[ggplot2 httr jsonlite plyr reshape2 rgdal sp]; }; - rYoutheria = derive2 { name="rYoutheria"; version="1.0.0"; sha256="1yj66ars5a8mbv2axl6l5g7wflwz3j4mhwk3iz5w33rfhixixm9l"; depends=[plyr RCurl reshape2 RJSONIO]; }; + rWind = derive2 { name="rWind"; version="0.1.3"; sha256="15a9x1arfc6pfcn6z87mlnnds38zl8nb5b5ix081mssp0s0anm26"; depends=[raster shape]; }; + rYoutheria = derive2 { name="rYoutheria"; version="1.0.3"; sha256="1r63ggy4knwzxnpjkmsn7zwmwfaznm8mmxl7r9ph10wz4sblgygl"; depends=[plyr RCurl reshape2 RJSONIO]; }; race = derive2 { name="race"; version="0.1.59"; sha256="13jprlnngribgvyr7fbg9d36i8qf3cax85n71dl71iv0y24al1cy"; depends=[]; }; radar = derive2 { name="radar"; version="1.0.0"; sha256="1wh5j3cfbj01jx2kbm9ca5cqhbb0vw7ifjn426bllm4lbbd8l273"; depends=[]; }; - radarchart = derive2 { name="radarchart"; version="0.1.2"; sha256="1zhkzc1x411q14drdkhwrivsz818hvqrv1zyvcyq3a3dl65xavqr"; depends=[htmltools htmlwidgets]; }; - radiomics = derive2 { name="radiomics"; version="0.1.1"; sha256="0rw1xvp7nq8h5g4yqqcwrv706zssa0kvkhm6ncdb9y7gmpidhyj5"; depends=[reshape2 spatstat]; }; - radir = derive2 { name="radir"; version="1.0.1"; sha256="1i37ynxl85yzh5pyxykjn64p5qph1w9b1gappmlhql9z04095ryk"; depends=[hermite]; }; + radarchart = derive2 { name="radarchart"; version="0.3.1"; sha256="0gcxnbgj8ja1m4wzhbjy67m6zphf0c5ni9yx7sr7f0abm03ry753"; depends=[htmltools htmlwidgets]; }; + radiant = derive2 { name="radiant"; version="0.6.0"; sha256="037xskigyisr5sgsrr8xbgvqidl775vdw7vllwpsq4akyz9i6amc"; depends=[AlgDesign psych r_import radiant_basics radiant_data radiant_design radiant_model radiant_multivariate shiny]; }; + radiant_basics = derive2 { name="radiant.basics"; version="0.6.0"; sha256="00i78hxafp7s5hpv54frfsjsj690jn5awsj0k4hdaiphiqb4gmmp"; depends=[dplyr ggplot2 gridExtra magrittr psych r_import radiant_data scales shiny tidyr]; }; + radiant_data = derive2 { name="radiant.data"; version="0.6.0"; sha256="1iiby1472p8j2fprryvj0ifl6z7y2hpwhdb10krd3ywxv476z2cd"; depends=[base64enc broom car curl dplyr DT ggplot2 gridExtra jsonlite knitr lubridate magrittr markdown pryr psych r_import readr rmarkdown rstudioapi scales shiny shinyAce tibble tidyr]; }; + radiant_design = derive2 { name="radiant.design"; version="0.6.0"; sha256="0434zn42bkb2q01p63iw7imjkc45agnj909x3bfwm6y2kmgkvga9"; depends=[AlgDesign dplyr mvtnorm polycor r_import radiant_data shiny]; }; + radiant_model = derive2 { name="radiant.model"; version="0.6.0"; sha256="04jnbhmvwfkf80xz2r3mimzdyr1yw80l9sq9pr52vcf7r98j13gq"; depends=[car data_tree DiagrammeR dplyr ggplot2 gridExtra lubridate magrittr NeuralNetTools nnet pryr r_import radiant_basics radiant_data sandwich shiny stringr tidyr yaml]; }; + radiant_multivariate = derive2 { name="radiant.multivariate"; version="0.6.0"; sha256="01gzcvq5xq8ljbxkwx8qxcpd871nd03236fkv1gr5s1bw9lb0z6l"; depends=[car dplyr ggplot2 gridExtra magrittr MASS psych r_import radiant_data scales shiny wordcloud]; }; + radiomics = derive2 { name="radiomics"; version="0.1.2"; sha256="1l9ribgyk0wgr7cy4fh7qp0hwzxcmkir9r2zwb0ha3rqqggd3xj7"; depends=[Rcpp reshape2 spatstat]; }; + radir = derive2 { name="radir"; version="1.0.2"; sha256="09lcq8ax5x5yk3sqx15rvw3vyi8fyfzgs76kxjhf7hcw4qnib46d"; depends=[hermite]; }; rafalib = derive2 { name="rafalib"; version="1.0.0"; sha256="1dmxjl66bfdgrybhwyaa8d4i460liqcdw8b29a6w7shgksh29m0k"; depends=[RColorBrewer]; }; - rags2ridges = derive2 { name="rags2ridges"; version="2.0"; sha256="0qc93a1bf63iwgmpz9bz62j20p4v77bvbjmy4rqchj7z6h573njd"; depends=[expm fdrtool ggplot2 Hmisc igraph Rcpp RcppArmadillo reshape sfsmisc snowfall]; }; + rags2ridges = derive2 { name="rags2ridges"; version="2.1.1"; sha256="1wma4yikm7aqccldqga96hl2vpagjvmv5gwglj04clcmh9i7cskp"; depends=[expm fdrtool ggplot2 Hmisc igraph Rcpp RcppArmadillo reshape sfsmisc snowfall]; }; + ragt2ridges = derive2 { name="ragt2ridges"; version="0.2.3"; sha256="1ws2drllynmwc4dfd90b7pafc1gpz99g129yjf511ikjzfbl3lra"; depends=[expm fdrtool graph gRbase igraph marray Matrix mvtnorm rags2ridges RBGL Rcpp RcppArmadillo]; }; + ragtop = derive2 { name="ragtop"; version="0.5"; sha256="0h09h9ws9c2d9xc00w4hl000h0kbvq16lz4vgv1w93am8zmsp4wm"; depends=[futile_logger limSolve]; }; + rainbow = derive2 { name="rainbow"; version="3.4"; sha256="09vxdb4j099grnlx10995b74r3h9g1vs8div3nywgnslaj8x7pay"; depends=[cluster colorspace hdrcde ks MASS pcaPP]; }; raincpc = derive2 { name="raincpc"; version="0.4"; sha256="0yzpyidvf24frf82pj7rarjh0ncm5dhm0mmpsf2ycqlvp0qld10i"; depends=[SDMTools]; }; rainfreq = derive2 { name="rainfreq"; version="0.3"; sha256="0985ck2bglg22gfj7m0hc7kpk0apljsbssf1ci99mgk47yi8fk9v"; depends=[RCurl SDMTools]; }; - ramify = derive2 { name="ramify"; version="0.3.2"; sha256="0fqspa1nlf0969g3lvvwg65zimwfdj5c2bahxvafggn832sb54k9"; depends=[]; }; - ramps = derive2 { name="ramps"; version="0.6-13"; sha256="1y7jaajzbf6d9xwr0rg0qr43l8kncgwbpfy5rpka90g3244v8nwz"; depends=[coda fields maps Matrix nlme]; }; + rakeR = derive2 { name="rakeR"; version="0.1.2"; sha256="064vprqrsing372hhkp6a7jfihbbik2i40i7mp9l79n816szpgm7"; depends=[ipfp]; }; + ramcmc = derive2 { name="ramcmc"; version="0.1.0"; sha256="0s5jgjqkschr64srblppv9lbvhynlpfiy8cy12fywpmnbv8viazq"; depends=[Rcpp RcppArmadillo]; }; + ramidst = derive2 { name="ramidst"; version="0.1.0"; sha256="1q4lvq2c2vj9xrm2p2w2qjsl4qvwcl6y54y68mmbd6cw7wqpffjj"; depends=[rJava]; }; + ramify = derive2 { name="ramify"; version="0.3.3"; sha256="0cxmkxhshg0vrcxai2gbm4iih04f44liv5nh5jiq85hjz8qbhdi2"; depends=[]; }; + ramps = derive2 { name="ramps"; version="0.6-14"; sha256="09chbqh13h8b10dlcka07y954ga129lamg0fr38iwj4lqb6a2fvy"; depends=[coda fields maps Matrix nlme]; }; ramsvm = derive2 { name="ramsvm"; version="2.0"; sha256="1q6ag3x1mgkyw8nsxghhk9yrcr0ybwilsx1yzg98bqsmxrrqk17q"; depends=[doParallel foreach]; }; - randNames = derive2 { name="randNames"; version="0.2.1"; sha256="177xdgrikvfcgjag382v5d1j72322ihnbggzxp9ip6p48ib4p3qg"; depends=[dplyr httr jsonlite]; }; + randNames = derive2 { name="randNames"; version="0.2.3"; sha256="0vhzg14yg4c9inzxin8prfzh6nhf8fvbi4hbn122fyqyp5d6f8zi"; depends=[httr jsonlite tibble]; }; randaes = derive2 { name="randaes"; version="0.3"; sha256="14803argy0xdd8mpn4v67gbp90qi2is4x6na9zw7i9pm504xji1x"; depends=[]; }; - random = derive2 { name="random"; version="0.2.5"; sha256="0n96zv3b95msahpzdwfqsd9i9bq2z94flxxm8ghnqb0b75qcsdg0"; depends=[curl]; }; - random_polychor_pa = derive2 { name="random.polychor.pa"; version="1.1.4-1"; sha256="1051v7krrawdqnhz9q01rsknp2i7iv82d370q7m9i9d9i8wfnpk5"; depends=[boot MASS mvtnorm nFactors psych sfsmisc]; }; + randgeo = derive2 { name="randgeo"; version="0.1.0"; sha256="1jjblzqm45yxz5pvkg2mhv891vxlw0c3ii8y6gah680g09xgwjxx"; depends=[]; }; + random = derive2 { name="random"; version="0.2.6"; sha256="0sdhagwjlhldb8hn6h4nd1sflzhwkapzybdlb8hzisy3w2ygjn9b"; depends=[curl]; }; + random_polychor_pa = derive2 { name="random.polychor.pa"; version="1.1.4-2"; sha256="1ybwfn3hdwisxjn85vqrib1zhk8dcddbarbwjdf1vn27ih3c4h2c"; depends=[boot MASS mvtnorm nFactors psych sfsmisc]; }; randomForest = derive2 { name="randomForest"; version="4.6-12"; sha256="1i43idaihhl6nwqw42v9dqpl6f8z3ykcn2in32lh2755i27jylbf"; depends=[]; }; randomForest_ddR = derive2 { name="randomForest.ddR"; version="0.1.1"; sha256="0q4xjh7qqmd4slxwd1z5mnpn4y3vx1vbn6v060zbd0afibpcw92b"; depends=[ddR Matrix randomForest]; }; - randomForestSRC = derive2 { name="randomForestSRC"; version="2.1.0"; sha256="1x9xlf808gs25wqpa0a7gfxf0fdgf6jgj8237g61s1yx3vninhnn"; depends=[]; }; + randomForestSRC = derive2 { name="randomForestSRC"; version="2.4.1"; sha256="17a59jc8h7bfgz9gpisc144fyas7da1c1lab1x8wasfilgkg08z2"; depends=[]; }; randomGLM = derive2 { name="randomGLM"; version="1.02-1"; sha256="031338zxy6vqak8ibl2as0l37pa6qndln0g3i9gi4s6cvbdw3xrv"; depends=[doParallel foreach MASS]; }; - randomLCA = derive2 { name="randomLCA"; version="1.0-6"; sha256="1l343p9a6z2ld3z2kqwldmn3wxf8yvjqr4nfhyjwp4y5d2ic9r11"; depends=[boot fastGHQuad lattice Matrix SciencesPo]; }; - randomNames = derive2 { name="randomNames"; version="0.1-0"; sha256="0v92w0z0dsdp6hhyyq764nlky8vmbs6vcnrna5ls47fj80f9cqa4"; depends=[data_table]; }; + randomLCA = derive2 { name="randomLCA"; version="1.0-10"; sha256="1h1fxymdiycxn90lipzb190xakf7hlbn6nwxsbfwcz8278xkcn4g"; depends=[boot fastGHQuad lattice Matrix]; }; + randomNames = derive2 { name="randomNames"; version="0.4-0"; sha256="0419kjgin5yf58765rc6m8wcbp26yggkiarprzissqaf9sp0sh4p"; depends=[data_table]; }; randomUniformForest = derive2 { name="randomUniformForest"; version="1.1.5"; sha256="1amr3m7h5xcb8gahrr58233chsnx1naf9x5vpjy9p5ivh71xcxf7"; depends=[cluster doParallel foreach ggplot2 gtools iterators MASS pROC Rcpp]; }; + randomcoloR = derive2 { name="randomcoloR"; version="1.0.0"; sha256="15qgfzwc2cli2gjwzj1pf4h16qciiinihd9ib6ph74jbkpimyh11"; depends=[colorspace stringr V8]; }; randomizationInference = derive2 { name="randomizationInference"; version="1.0.3"; sha256="0x36r9bjmpx90fz47cha4hbas4b31mpnbd8ziw2wld4580jkd6mk"; depends=[matrixStats permute]; }; randomizeBE = derive2 { name="randomizeBE"; version="0.3-2"; sha256="1mkq1fpr7bwlk01246qy6w175jcc94q8sb3pyjkdr8yms6iqk8i7"; depends=[]; }; - randomizr = derive2 { name="randomizr"; version="0.3.0"; sha256="1zi8rldmgjcjnnx3qcpr555c4g713nh6wrdh5gr77z2qagbljb1i"; depends=[]; }; + randomizeR = derive2 { name="randomizeR"; version="1.3"; sha256="0s62r0fxi0f9jbwldvga2vn06cp0amxjhmqch7d892c4wa7r9fj0"; depends=[ggplot2 plotrix]; }; + randomizr = derive2 { name="randomizr"; version="0.4.1"; sha256="0shj50s88l96d0zl8iv2wdzgrszffi9hgv7hsmvcxh1jm051ipi9"; depends=[]; }; + randstr = derive2 { name="randstr"; version="0.2.0"; sha256="17593lbk6r089yasafd21i3v90ya9n92rflpzl0qicd2kqqk2gdh"; depends=[random stringi truncnorm]; }; randtests = derive2 { name="randtests"; version="1.0"; sha256="03z3kxl4x0l91dsv65ld9kgc58z82ld1f4lk18i18dpvwcgkqk82"; depends=[]; }; randtoolbox = derive2 { name="randtoolbox"; version="1.17"; sha256="107kckva43xpqncak8ll4h0mjm8lcks4jpf7dffgw5ggcc77ycrb"; depends=[rngWELL]; }; - rangeBuilder = derive2 { name="rangeBuilder"; version="1.1"; sha256="1a2cjpl3hxynwpzc4rz5g0g5gq2h15jvbcvkdqv59j905rhaikg1"; depends=[alphahull raster rgdal rgeos sp stringi]; }; - rangeMapper = derive2 { name="rangeMapper"; version="0.3-0"; sha256="0r8nf2y4drdfldfr1rv1ll4176w3hzd9qf36glzjdsm0g1fcixba"; depends=[classInt data_table foreach ggplot2 gridExtra lattice magrittr maptools raster RColorBrewer rgdal rgeos RSQLite sp]; }; - rangemodelR = derive2 { name="rangemodelR"; version="1.0"; sha256="19wbzrim0mjngdfsrmfidk1csh7fzqv6cwh4hxvjgjl2ps99cank"; depends=[]; }; - ranger = derive2 { name="ranger"; version="0.3.0"; sha256="1vi0wkks5rzn6mc6k2lh0rdbb5awvcfww68kk0wndng45mk7hrq2"; depends=[Rcpp]; }; + rangeBuilder = derive2 { name="rangeBuilder"; version="1.3"; sha256="08v01b0wm5r73yp2qkxxvd8jsxba22rnqsbwwrqrkrm71c68j192"; depends=[alphahull raster rgdal rgeos sp stringi]; }; + rangeMapper = derive2 { name="rangeMapper"; version="0.3-1"; sha256="005r97zwz0czsp543h1g3zrys00s6wdyk0ji9pk7jn625i02cbdk"; depends=[classInt data_table foreach ggplot2 gridExtra lattice magrittr maptools raster RColorBrewer rgdal rgeos RSQLite sp]; }; + rangemodelR = derive2 { name="rangemodelR"; version="1.0.1"; sha256="04zv8a4nhin9masvbw1cmbwdkls4wgq81xfw6kg0wdh1hpqjz1z0"; depends=[]; }; + ranger = derive2 { name="ranger"; version="0.6.0"; sha256="1fwqwbi0dnla16x6zj14rf95qr5gmilfmlrwnv7s960h4yiw4n97"; depends=[Rcpp]; }; + rankFD = derive2 { name="rankFD"; version="0.0.1"; sha256="1zb9gxvsmv46mpw5znskhfjxnwkr59hdixcly6i3r78yaqgca0dz"; depends=[coin lattice MASS Matrix]; }; rankdist = derive2 { name="rankdist"; version="1.1.2"; sha256="1nr9nr5nfziia6jykk598hm5ngkfr6yx5mypq34iyfm24877gd3q"; depends=[hash optimx permute Rcpp]; }; - rankhazard = derive2 { name="rankhazard"; version="1.0-2"; sha256="1gx30ak5vjgbgnx920789d38y16rl8w7hbxfk9yb8xjl1azgfaqx"; depends=[survival]; }; - rappdirs = derive2 { name="rappdirs"; version="0.3"; sha256="1yjd91h1knagri5m4djal25p7925162zz5g6005h1fgcvwz3sszd"; depends=[]; }; + rankhazard = derive2 { name="rankhazard"; version="1.1.0"; sha256="0kljn9b74alrd22b5pwfnamdbaqi2wa2z6yzpmgpfs3x0hv72fw7"; depends=[survival]; }; + rapiclient = derive2 { name="rapiclient"; version="0.1.2"; sha256="072rlr7z9rj4agkzmy12cz4axh4pajavfd83lpcx2b1lgxpj6ck4"; depends=[httr jsonlite]; }; + rappdirs = derive2 { name="rappdirs"; version="0.3.1"; sha256="0ji6sg3bdn5gazkq14xmmcq7jnbsyxw4lzmmbgv6526j2vn93n1g"; depends=[]; }; rapport = derive2 { name="rapport"; version="1.0"; sha256="1i1zawar5yxw23km74mrvaxnc9hr06kqjvbm046c09cqi6pw0hjh"; depends=[pander rapportools stringr yaml]; }; rapportools = derive2 { name="rapportools"; version="1.0"; sha256="1sgv4sc737i12arh5dc3263kjsz3dzg06qihfmrqyax94mv2d01b"; depends=[pander plyr reshape]; }; + raptr = derive2 { name="raptr"; version="0.0.3"; sha256="1ydk83w1sd60pb0a03938hlgdw87pk40l028cxwa8kzwrzi6gh1j"; depends=[adehabitatHR BH boot doParallel gdalUtils ggplot2 hypervolume ks Matrix mvtnorm PBSmapping plyr RandomFields raster RColorBrewer Rcpp RcppEigen rgdal rgeos RgoogleMaps scales shape sp testthat]; }; rareGE = derive2 { name="rareGE"; version="0.1"; sha256="0v3a2wns77q923ilddicqzg0108f8kmfdnsff1n65icin7cfzsny"; depends=[MASS nlme survey]; }; rareNMtests = derive2 { name="rareNMtests"; version="1.1"; sha256="13r2hipqsf8z9k48ha5bh53n3plw1whb7crpy8zqqkcac8444b2z"; depends=[vegan]; }; - rasclass = derive2 { name="rasclass"; version="0.2.1"; sha256="04g2sirxrf16xjmyn4zcci757k7sgvsjbg0qjfr5phbr1rssy9qf"; depends=[car e1071 nnet randomForest RSNNS]; }; + rasclass = derive2 { name="rasclass"; version="0.2.2"; sha256="1lsmv8kh519mz3szb4k9s17fz1480cw0i4qk12givhhm2rpzjy50"; depends=[car e1071 nnet randomForest RSNNS]; }; rase = derive2 { name="rase"; version="0.2-22"; sha256="0wva7dd7zsclqxk3imkvbi98rxsvd1axr1l1msfcf9r8xrzybshf"; depends=[ape mvtnorm polyCub rgl sm spatstat]; }; - raster = derive2 { name="raster"; version="2.5-2"; sha256="0x6rmd4mcvivkisxpjlp7myf8crz58md2ngz6qsz37i8aw1hn3jb"; depends=[Rcpp sp]; }; - rasterVis = derive2 { name="rasterVis"; version="0.37"; sha256="1pfpjrjgcy5d4jzkf7sm427y0b6v0ipxr9p8z9sr6djhzcs3gfn0"; depends=[hexbin lattice latticeExtra raster RColorBrewer sp zoo]; }; + raster = derive2 { name="raster"; version="2.5-8"; sha256="1k34caqj8fab7am44zmp1szk0w15rjc04xz3phzm2l1lg2yjm6a7"; depends=[Rcpp sp]; }; + rasterImage = derive2 { name="rasterImage"; version="0.3.0"; sha256="0csx7wqwxdsddypd1c9wv74gcyymasn9n6pn05a35j6xhqbk2zp3"; depends=[plotrix]; }; + rasterKernelEstimates = derive2 { name="rasterKernelEstimates"; version="1.0.1"; sha256="1733ic1hxym3gyibk2ysy5zzq7s9rbf6jx63x7irnrcavq151f8s"; depends=[raster]; }; + rasterVis = derive2 { name="rasterVis"; version="0.41"; sha256="0dsg8ypsxxa7qagy5yjcyqyjqqyy7xgfbmiijr3xbn2n1wp090n9"; depends=[hexbin lattice latticeExtra raster RColorBrewer sp viridisLite zoo]; }; + ratelimitr = derive2 { name="ratelimitr"; version="0.3.7"; sha256="19j43xz1arn8h7pni5797ds7hmcj7llbgaiw514qpwnsp0qx24f6"; depends=[assertthat]; }; rateratio_test = derive2 { name="rateratio.test"; version="1.0-2"; sha256="1a2v12z2dr893ha80fhada1820z5ih53w4pnsss9r9xw3hi0m6k5"; depends=[]; }; raters = derive2 { name="raters"; version="2.0.1"; sha256="16jnx6vv39k4niqkdlj4yhqx8qbrdi99bwzxjahsxr12ab5npbp1"; depends=[]; }; + ratesci = derive2 { name="ratesci"; version="0.1-0"; sha256="15ar1jx026qn01yk1lnmn40wqkf8ngpjlqiqizi16mxz28rrgr6n"; depends=[]; }; rationalfun = derive2 { name="rationalfun"; version="0.1-0"; sha256="15949vs9pdjz7426zhgqn7y87xzn79ikrpa2vyjnsid1igpyh0mp"; depends=[polynom]; }; rattle = derive2 { name="rattle"; version="4.1.0"; sha256="0ww4bwwvivpk049lpv6k29zxkb0islhwh2qnlrvasgh2b9yig25p"; depends=[magrittr RGtk2 stringi]; }; - rbamtools = derive2 { name="rbamtools"; version="2.14.3"; sha256="1sdnz52vd5gfwc194y6ilrd8dkawv86xcd37100giz1525wf929i"; depends=[]; }; + raw = derive2 { name="raw"; version="0.1.4"; sha256="112fw1si708qrj6r91b1i8cwhxa20amri5838rc5azn6d5b9wcks"; depends=[]; }; + rbamtools = derive2 { name="rbamtools"; version="2.16.0"; sha256="0a3862923wn9mxpbhsq7sxd0q306xnzphsn2p0zxsx1ixw7ksy4j"; depends=[refGenome]; }; rbefdata = derive2 { name="rbefdata"; version="0.3.5"; sha256="12mcqz0pqgwfw5fmma0gwddj4zk0hpwmrsb74dvzqvgcvpfjnv98"; depends=[RColorBrewer RCurl rjson rtematres wordcloud XML]; }; rbenchmark = derive2 { name="rbenchmark"; version="1.0.0"; sha256="010fn3qwnk2k411cbqyvra1d12c3bhhl3spzm8kxffmirj4p2al9"; depends=[]; }; - rbhl = derive2 { name="rbhl"; version="0.2.0"; sha256="169nrbpi9ijzb5qk1b1dwjayfnsjq8r67dc7bis9aicyp4hpjyzw"; depends=[httr jsonlite plyr XML]; }; + rbgm = derive2 { name="rbgm"; version="0.0.4"; sha256="0sqi42vz3fdgp7gpa4jjh8dxz3iwwagw9in70jpz6fc18ivizkp1"; depends=[dplyr geosphere raster sp tibble]; }; + rbhl = derive2 { name="rbhl"; version="0.3.0"; sha256="0ig9s0xnwkri1sxqaa8fax68v22bp4vl9rv4wq1gd3gpgl2c0frc"; depends=[httr jsonlite plyr tibble xml2]; }; + rbi = derive2 { name="rbi"; version="0.7.0"; sha256="0j5h5m4xshs5xizzb3fxlzjgp6nkyz0hbh0yhky1pj815n66ww9m"; depends=[data_table ncdf4 reshape2]; }; rbiouml = derive2 { name="rbiouml"; version="1.7"; sha256="0bk0pvx0rfk74s7lbr8lc664yplfky94j1ym098w029045k233pi"; depends=[RCurl RJSONIO]; }; - rbison = derive2 { name="rbison"; version="0.4.8"; sha256="10kwlf7vrzw2rhsdwih5lcvjw0bz0n88mp74ayc9331d8j226214"; depends=[dplyr ggplot2 httr jsonlite mapproj plyr sp]; }; + rbison = derive2 { name="rbison"; version="0.5.0"; sha256="01j8jnfhikaggsvcnxamchvgabp8rbpmi1q18s1bcn5vc55fi12f"; depends=[dplyr ggplot2 httr jsonlite mapproj plyr sp]; }; rbitcoinchartsapi = derive2 { name="rbitcoinchartsapi"; version="1.0.4"; sha256="0r272jvjh3rzch8dmn4s0a5n5k6dsir7pr4qswzfvafqjdiwjajz"; depends=[RCurl RJSONIO]; }; rbmn = derive2 { name="rbmn"; version="0.9-2"; sha256="1zy832y399cmfmhpyfh7vfd293fylf1ylmp8w8krkmzkmyfa80f2"; depends=[MASS]; }; - rbokeh = derive2 { name="rbokeh"; version="0.4.2"; sha256="05v3ry6mhbwl903rn2941qam2pvfkr0fnp7qzhgn9z12dxjmpl8i"; depends=[digest ggplot2 gistr hexbin htmlwidgets jsonlite lazyeval magrittr maps pryr scales]; }; + rbokeh = derive2 { name="rbokeh"; version="0.5.0"; sha256="1lpbph6bhh9rf5rs0ivp8dchx8i8ylz5nr7xc2xv9bnwlwj35729"; depends=[digest ggplot2 gistr hexbin htmlwidgets jsonlite lazyeval magrittr maps pryr scales]; }; rbounds = derive2 { name="rbounds"; version="2.1"; sha256="1h334bc37r1vbwz1b08jazsdrf6qgzpzkil9axnq5q04jf4rixs3"; depends=[Matching]; }; rbugs = derive2 { name="rbugs"; version="0.5-9"; sha256="1kvn7x931gjpxymrz0bv50k69s1x1x9mv34vkz54sdkmi08rgb3y"; depends=[]; }; rbundler = derive2 { name="rbundler"; version="0.3.7"; sha256="0wmahn59h9vqm6bq1gwnf6mvfkyhqh6xvdc5hraszn1419asy26f"; depends=[devtools]; }; rbvs = derive2 { name="rbvs"; version="1.0.2"; sha256="1wzxz2ca8f1phhbqr9p7c8sk09cyrdq5jc45g4ddrqvi2q29k28y"; depends=[]; }; - rcanvec = derive2 { name="rcanvec"; version="0.1.4"; sha256="0mnrnwxk14i9yarrq4vhflkhqfdqz8vpn2z10c3rlyrx849xh7zi"; depends=[rgdal sp]; }; - rcbalance = derive2 { name="rcbalance"; version="1.8.2"; sha256="0jd6brswpm2ymvk3z72kzfg2axd4wan70dbcgvldjjaz2mvhz56z"; depends=[MASS plyr]; }; + rcanvec = derive2 { name="rcanvec"; version="0.2.1"; sha256="0gsk2cfiysxjw2lrnpl2l524lvhh9nhnyyh79n8p7vykyqj711yn"; depends=[rgdal sp]; }; + rcbalance = derive2 { name="rcbalance"; version="1.8.3"; sha256="0bksyjbxdllgaqkhpz29isslqkpp3y4xl3wqhpjy881lhlw40y1j"; depends=[MASS plyr]; }; rcbsubset = derive2 { name="rcbsubset"; version="1.1.2"; sha256="0izvxbkjmhyp8jz4mlwa5grdgcd8q9pdc3jwrccby0xz0f5gw2x0"; depends=[MASS plyr]; }; - rcdd = derive2 { name="rcdd"; version="1.1-9"; sha256="1mwg9prf7196b7r262ggdqsfq1i7czm1a0apk4j5014cxzyb6j5s"; depends=[]; }; - rcdk = derive2 { name="rcdk"; version="3.3.2"; sha256="02rlg3w8dbmag8b4z4wayh7xn61xc9g3647kxg91r0mvfhmrxl2h"; depends=[fingerprint iterators png rcdklibs rJava]; }; - rcdklibs = derive2 { name="rcdklibs"; version="1.5.8.4"; sha256="0mzkr23f4d639vhxfdbg44hzxapmpqkhc084ikcj93gjwvdz903k"; depends=[rJava]; }; - rchallenge = derive2 { name="rchallenge"; version="1.1.1"; sha256="0ksbqsz6q7ri3xknzh6sl39lq9wqrqqv5bmirybglf48q0prszf5"; depends=[knitr rmarkdown]; }; + rccdates = derive2 { name="rccdates"; version="1.0.0"; sha256="1f87qlw62am2qy1zzrz91vmsn8axhld44gak61xa7046675hm98s"; depends=[rccmisc]; }; + rccmisc = derive2 { name="rccmisc"; version="0.3.7"; sha256="171s2ll759xjdnx0z24ih5ix2vcp4qnmf1nf107gij6wv8k450ab"; depends=[dplyr]; }; + rcdd = derive2 { name="rcdd"; version="1.1-10"; sha256="16j98x87dsjd7zj5pp9i5lc0a3ypr98zjwydpyhpl3zc0vnbbild"; depends=[]; }; + rcdk = derive2 { name="rcdk"; version="3.3.8"; sha256="0gwjb6ph7v94zl3kdh24dbk8hz48gi2y3xmj35wpjvzc496ldmbf"; depends=[fingerprint iterators itertools png rcdklibs rJava]; }; + rcdklibs = derive2 { name="rcdklibs"; version="1.5.13"; sha256="0ypfg4kzf07j1gi6nyifkss9s43hcb7jps9qh6990ci5qasw4z6a"; depends=[rJava]; }; + rchallenge = derive2 { name="rchallenge"; version="1.3.0"; sha256="1qn2pzch5yk771jsjcsmfsi5vddfb2w50vfqlkmsl6nf5z6sdq9k"; depends=[knitr rmarkdown]; }; rchess = derive2 { name="rchess"; version="0.1"; sha256="0qnvvvwcl02rmqra9m7qnhy40cbavswbq6i0jm47x6njmr1gpfhy"; depends=[assertthat dplyr ggplot2 htmlwidgets plyr R6 V8]; }; - rcicr = derive2 { name="rcicr"; version="0.3.2.1"; sha256="0svr869x5sbzymk95g4lm0kbdi0f7dlbgk88i8jhp4wa3g98pwyv"; depends=[aspace dplyr jpeg matlab]; }; - rclinicaltrials = derive2 { name="rclinicaltrials"; version="1.4.1"; sha256="1x8mj4gzfpgvdj3glwanr76g5x8pks8fm806bvnfls35g967z4p4"; depends=[httr plyr XML]; }; - rcorpora = derive2 { name="rcorpora"; version="1.1.1"; sha256="14lnfn9armb6rz1wcs7hdrb4j2vzh6b8pi9lsj83l3zixkxx5izk"; depends=[jsonlite]; }; - rcppbugs = derive2 { name="rcppbugs"; version="0.1.4.2"; sha256="0b057hgw0g9i83l18przjziq5sakjsz7m8vif3lprzs1d91c2xn1"; depends=[BH Rcpp RcppArmadillo]; }; - rcrossref = derive2 { name="rcrossref"; version="0.5.2"; sha256="0a4xz43y40kl97yxc1hbsf84pyvkpz1l0p26nls8wm28x2wafb3b"; depends=[bibtex dplyr httr jsonlite plyr R6 xml2]; }; + rcicr = derive2 { name="rcicr"; version="0.3.4.1"; sha256="1sa13sbhx64cf8szr2811iq4a1asb8d3k0igxw6fbssij2lwbxzp"; depends=[aspace dplyr jpeg matlab scales]; }; + rclimateca = derive2 { name="rclimateca"; version="0.1"; sha256="0pnmazi33lvmccb1x2rkac0cwp8rf1p0659dfx9718vkdlgkvlgz"; depends=[digest httr lubridate prettymapr reshape2]; }; + rclinicaltrials = derive2 { name="rclinicaltrials"; version="1.4.7"; sha256="1y9naqi2bylihkasvfndkpwslnm393709645jwvwplzaaviy0hf7"; depends=[httr plyr XML]; }; + rcmdcheck = derive2 { name="rcmdcheck"; version="1.2.1"; sha256="04gh0drvkikn91i5zmpixhrhyjnsyxwz8k8bx4kgwwrmh1dc7f2s"; depends=[callr clisymbols crayon digest withr]; }; + rcompanion = derive2 { name="rcompanion"; version="1.4.0"; sha256="1brl9q421q8n5lab5wlp0hzgzdldwr2b9sa8qngkk3nfvzy1jdwx"; depends=[boot BSDA coin DescTools EMT FSA hermite lattice lmtest multcompView nortest ordinal plyr RVAideMemoire WRS2]; }; + rcorpora = derive2 { name="rcorpora"; version="1.2.0"; sha256="0nxd2arzz2617xxcngvcrrrsky9f1b9zdmpv81zr89y08b3xh9f1"; depends=[jsonlite]; }; + rcqp = derive2 { name="rcqp"; version="0.4"; sha256="1jpzp3cs17bwfabzg7jffa3hni867mjw8yxi0igxicrbz56j33jb"; depends=[plyr]; }; + rcrossref = derive2 { name="rcrossref"; version="0.6.0"; sha256="0fy1wkn6s5pkhcfhjydy5zvra89g1p2nf5j85czxhxbq60h1jd1b"; depends=[bibtex dplyr httr jsonlite miniUI plyr R6 rappdirs shiny stringr xml2]; }; rcrypt = derive2 { name="rcrypt"; version="0.1.1"; sha256="002r5wr0bmqbj014iz8wacj883j6gqcxc786m6p9a7zdrjpx2pqi"; depends=[]; }; + rcss = derive2 { name="rcss"; version="1.2"; sha256="08hiprjcjvc138laqrvlvrmn664b63x829ammzgrwjqcsj4kpmds"; depends=[Rcpp RcppArmadillo rflann]; }; + rcure = derive2 { name="rcure"; version="0.1.0"; sha256="1pcdc168bwn0b90xy8sdwrm2yvhj26xj11wm8z84m48sxy56j4v8"; depends=[arm MASS plyr smcure survival]; }; rda = derive2 { name="rda"; version="1.0.2-2"; sha256="1g2q7c0y138i9r7jgjrlpqznvwpqsj6f7vljqqfzh2l6kcj43vjj"; depends=[]; }; rdatacite = derive2 { name="rdatacite"; version="0.1.0"; sha256="1h8zrgy3ig4rsrm4j9ivff71mdyabrdp71cflxahw7c3q9iyjxhf"; depends=[oai solrium]; }; rdatamarket = derive2 { name="rdatamarket"; version="0.6.5"; sha256="1y4493cvhcgyg2j5hadx1fzmv2lzwan78jighi2dzyxxzv6pxccn"; depends=[RCurl RJSONIO zoo]; }; rdd = derive2 { name="rdd"; version="0.57"; sha256="1lpkzcjd18x51wzr4d1prdjfsw5978z6zap65psfs02nszy69nqp"; depends=[AER Formula lmtest sandwich]; }; rddtools = derive2 { name="rddtools"; version="0.4.0"; sha256="1z9sl9fwsq8zs1ygmnjnh3p6h9hjkikbm4z7cdkxw66y0hxgn96s"; depends=[AER Formula ggplot2 KernSmooth lmtest locpol np rdd sandwich]; }; + rdefra = derive2 { name="rdefra"; version="0.1"; sha256="1c5j2ja54k7pk86g7mh5wbqx1qkj8ks2ihmn774aqyky6nkgmx92"; depends=[plyr RCurl XML]; }; rdetools = derive2 { name="rdetools"; version="1.0"; sha256="0pkl990viv7ifr7ihgdcsww93sk2wlzp2cg931wywagfp8dijd02"; depends=[]; }; rdian = derive2 { name="rdian"; version="0.1.1"; sha256="0i4ljcqhmrwrqbhi321iffypxj4kndx47ssljnixr3fx2lmqh0q1"; depends=[curl httr]; }; - rdrobust = derive2 { name="rdrobust"; version="0.80"; sha256="02adafhbjp259hbbbk32yllgn35xxim2mwn6yixv4wh5dgr974v6"; depends=[]; }; + rdnb = derive2 { name="rdnb"; version="0.1-1"; sha256="1mg40jad79mk95ndnljvfvyh9rhbxkw7inpg2vbsixf1ywdljri3"; depends=[brew httr xml2]; }; + rdomains = derive2 { name="rdomains"; version="0.1.5"; sha256="0xz6vdci2yxmc2850jlgj7c27cndwvk645kwky0whisg6cbv8wdg"; depends=[aws_alexa curl glmnet Matrix RSelenium urltools virustotal XML]; }; + rdpla = derive2 { name="rdpla"; version="0.1.0"; sha256="0h3m2f5rdyvdgb767hnmck4z1wq1y4hvbcwgfh7zfjcd9zns42h1"; depends=[data_table httr jsonlite tibble]; }; + rdrobust = derive2 { name="rdrobust"; version="0.95"; sha256="09dk8kgpyz3sdkvspwka9p4a6kvl7yibdppd9y06sa7grmpykvzm"; depends=[]; }; rdrop2 = derive2 { name="rdrop2"; version="0.7.0"; sha256="03r3iqi796y7s8bnyca6nya2ys7s1rdxm00sy9c7l7sh0z6npcq4"; depends=[assertthat data_table dplyr httr jsonlite magrittr]; }; rdryad = derive2 { name="rdryad"; version="0.2.0"; sha256="16wbf0hpb4pgjcq84s7ac0y1cm5i33l8n6li5z8ynivdj9w9fb46"; depends=[httr oai solr xml2]; }; + rdwd = derive2 { name="rdwd"; version="0.7.0"; sha256="0mqnf88y6g25q1a7k71ldd7szl4pm5s44cid1494m4xfdk50limb"; depends=[berryFunctions]; }; reGenotyper = derive2 { name="reGenotyper"; version="1.2.0"; sha256="13g4fhj25kdk6wbl1hcabcaxcpv0dj0hj2l502wl1aywk1fvmy8m"; depends=[gplots MatrixEQTL zoo]; }; reReg = derive2 { name="reReg"; version="1.0-0"; sha256="0xd78frrzykdrdwj39vv5m11s5v3xg9fym200gz7sffw8vjv3z96"; depends=[aftgee BB MASS SQUAREM survival]; }; - readBrukerFlexData = derive2 { name="readBrukerFlexData"; version="1.8.2"; sha256="1cagv6l29h3p87h7c2bgba23v2wxrs2kg4zg1dk046m2x11mwx3c"; depends=[]; }; - readGenalex = derive2 { name="readGenalex"; version="1.0"; sha256="1lhfw8xbwnjhslriaxziw4dskmjfawz5g31h2yl9ds2nwvwhmdwi"; depends=[pegas]; }; + reactR = derive2 { name="reactR"; version="0.1.0"; sha256="1fw6rdi231blr416hq881pc3glv7pnn3fhc496cnj0dzwg0b32v6"; depends=[htmltools]; }; + read_dbc = derive2 { name="read.dbc"; version="1.0.5"; sha256="1vrvxkcrk3iw5am9rsadxzf0wsr7z2mdpa5wb0v9jbhda710b4yf"; depends=[foreign]; }; + readBrukerFlexData = derive2 { name="readBrukerFlexData"; version="1.8.3"; sha256="0yisrg2gdd053xf1w0ssw7r4wdarqzbsqzrcngb0dl7ah0y5w7vb"; depends=[]; }; + readHAC = derive2 { name="readHAC"; version="1.0"; sha256="0z80ai6xfswwgdfh83l9sq279c97n0wz25bk2l7xfb6w0sndzq53"; depends=[]; }; + readJDX = derive2 { name="readJDX"; version="0.2.3"; sha256="0qqzplyhpyhf24111y12r0h299wz86scjymfrym2ycxm04116vw5"; depends=[stringr]; }; readMLData = derive2 { name="readMLData"; version="0.9-7"; sha256="0l752j1jq37j9pdcsbmcb23b5l8fkfsbisfr3yjy3q4rxsphc7k6"; depends=[XML]; }; readMzXmlData = derive2 { name="readMzXmlData"; version="2.8.1"; sha256="03lnhajj75i3imy95n2npr5qpm4birbli922kphj0w3458nq8g8w"; depends=[base64enc digest XML]; }; - readODS = derive2 { name="readODS"; version="1.6.2"; sha256="07c223cjn29mldhs9xs343b0i2xpcpps5pk65a1jsmjabd9k69zl"; depends=[cellranger readr xml2]; }; + readODS = derive2 { name="readODS"; version="1.6.4"; sha256="1kj648phxvpg480fdhr2sj4l8q306gjdl886zqnkwxif5mw1aq7g"; depends=[cellranger readr xml2]; }; + readability = derive2 { name="readability"; version="0.1.1"; sha256="19csrvnl1gslzamn46w5r0q4x12g56zr11m4lwp6rzwd5wcnj9ra"; depends=[data_table ggplot2 syllable tidyr]; }; readbitmap = derive2 { name="readbitmap"; version="0.1-4"; sha256="08fqqsdb2wsx415mnac9mzl5sr5and0zx72ablnlidqfxv8xsi9d"; depends=[bmp jpeg png]; }; - readbulk = derive2 { name="readbulk"; version="1.0.0"; sha256="0gsw1f8ycfg2jn2mp6dk203g0avpb4820f37pl5kn7mm7fn5w7bg"; depends=[plyr]; }; - reader = derive2 { name="reader"; version="1.0.5"; sha256="1g22pnlfr2c974s6rqnyixknhgy2crqbxg2cg2s3ja1sk29v4gr0"; depends=[NCmisc]; }; - readr = derive2 { name="readr"; version="0.2.2"; sha256="156422xwvskynna5kjc8h1qqnn50kxgjrihl2h2b7vm9sxxdyr2m"; depends=[BH curl Rcpp]; }; - readstata13 = derive2 { name="readstata13"; version="0.8.2"; sha256="1gp56wfyfcj1p1kix7iz0qr445ych3f0jkyjn5m7qkn7d43fimvd"; depends=[Rcpp]; }; - readxl = derive2 { name="readxl"; version="0.1.0"; sha256="0a0mjcn70a0nz1bkrdjwq495000kswxvyq1nlad9k3ayni2ixjkd"; depends=[Rcpp]; }; + readbulk = derive2 { name="readbulk"; version="1.1.0"; sha256="0m02isvja0ihvy1fscjdl5f9gfdlmfmabgvpirgd2m9j3lz6mi8s"; depends=[plyr]; }; + reader = derive2 { name="reader"; version="1.0.6"; sha256="1x489q3ljap4zpny68mx83mgxaqiwlkglcy57whwhnh33dd7qp4h"; depends=[NCmisc]; }; + readr = derive2 { name="readr"; version="1.0.0"; sha256="0xji0dbal6xcxnsmjj678fw29n7wrj45wrd5ng99yhqqijcm9f6g"; depends=[BH curl hms R6 Rcpp tibble]; }; + readstata13 = derive2 { name="readstata13"; version="0.8.5"; sha256="1hkbh7kia7bgshhlq2n683s0gs4rw4wzyfwrbp0hq1xirqnypj0a"; depends=[Rcpp]; }; + readxl = derive2 { name="readxl"; version="0.1.1"; sha256="0ypmxp1xl2a27vlx7dj6kszbbr8fbs6lcc1ibhw1ln1p053xmlrr"; depends=[Rcpp]; }; reams = derive2 { name="reams"; version="0.1"; sha256="07hqi0y59kv5lg0nl75xy8n48zw03y5m71zx58aiig94bf3yl95c"; depends=[leaps mgcv]; }; - rebird = derive2 { name="rebird"; version="0.2"; sha256="11x8db6gq9qkv9skslda4j6zgzmkmiap78rlwnlvkjvk1gzz13bf"; depends=[dplyr httr jsonlite]; }; - rebmix = derive2 { name="rebmix"; version="2.7.2"; sha256="1m71kvd7yska5iwgn0vzrhcbz8qmiwqrda201xqjxvvs8faqj66j"; depends=[]; }; - rebus = derive2 { name="rebus"; version="0.1-0"; sha256="00s11bskcmrqfb378nh9irc1x6kp9vq578jlj6pz6cvfw8hgc5lk"; depends=[rebus_base rebus_datetimes rebus_numbers rebus_unicode]; }; - rebus_base = derive2 { name="rebus.base"; version="0.0-1"; sha256="13z8zdr09kc14zhf1yf0r8m5h5zr5bjr8jagv9mam335b7ddgbjq"; depends=[]; }; + rebird = derive2 { name="rebird"; version="0.3.0"; sha256="0srny28mdd5zpk10pic5w0h0z21w2651rrdqsf87h7idm12j9zsw"; depends=[dplyr httr jsonlite]; }; + rebmix = derive2 { name="rebmix"; version="2.9.0"; sha256="1kbmz969wiv2jspa2pi0lgbxsj3sd9xzn24bmks6mv5hzl8pp9xb"; depends=[mvtnorm]; }; + rebus = derive2 { name="rebus"; version="0.1-2"; sha256="18vqq535dsakchwid6k2wb6jl50yf1vsqlaryadf1j0ivgawl6av"; depends=[rebus_base rebus_datetimes rebus_numbers rebus_unicode]; }; + rebus_base = derive2 { name="rebus.base"; version="0.0-2"; sha256="15yxh7wxb8hfbr5mhpcpyi817b5r6g6ki60hkycvxp13ss770qwn"; depends=[]; }; rebus_datetimes = derive2 { name="rebus.datetimes"; version="0.0-1"; sha256="09lv41mywm13avxb0xp8x1a2xz50zxazh3lpg27m16d4cgijmhm5"; depends=[rebus_base]; }; rebus_numbers = derive2 { name="rebus.numbers"; version="0.0-1"; sha256="0drgszz0824j49c6jk9ry0cfjky7g843ldlxrx3g2vjp0v7hznj3"; depends=[rebus_base]; }; - rebus_unicode = derive2 { name="rebus.unicode"; version="0.0-1"; sha256="0xkb5lp6798220cqy571rxj98cy673wn8kp0im3mcnpjx6p1q3n2"; depends=[rebus_base]; }; + rebus_unicode = derive2 { name="rebus.unicode"; version="0.0-2"; sha256="185313wh4zpp6addfdr78pjhxzazlfwgsddwk02zrzblf4iwzjdm"; depends=[rebus_base]; }; + recexcavAAR = derive2 { name="recexcavAAR"; version="0.2.2"; sha256="050klwldr8jzn0dwwh7yb0yzjckbdc4z7phd0rp8y8d5ah0n8bn2"; depends=[kriging Rcpp]; }; rechonest = derive2 { name="rechonest"; version="1.2"; sha256="0vpff8q5p6in7vjyl62bx3wmksravcg4mpx20qlgy5ia47vyhqp2"; depends=[httr jsonlite RCurl]; }; recluster = derive2 { name="recluster"; version="2.8"; sha256="05g8k10813zbkgja6gvgscdsjd99q124jx31whncc4awdsgk69s4"; depends=[ape cluster phangorn phytools picante vegan]; }; + recmap = derive2 { name="recmap"; version="0.5.16"; sha256="0fq0l483mmb04n2qj2msngw6midwjrq5fjdh3sgzy5fhj5bcd288"; depends=[GA Rcpp sp]; }; recoder = derive2 { name="recoder"; version="0.1"; sha256="0wh0lqp7hfd4lx2xnmszv1m932ax87k810aqxdb6liwbmvwqnfgd"; depends=[stringr]; }; - recommenderlab = derive2 { name="recommenderlab"; version="0.1-8"; sha256="17bab1irh7q9kznf1qz6jh81b4c98wcx323hq666dk23rc2kg7zx"; depends=[arules bcv Matrix proxy registry]; }; + recommenderlab = derive2 { name="recommenderlab"; version="0.2-1"; sha256="03gyz6davjimrbbnjglj41hysvvd2hnxsi166san1877ibblgw4c"; depends=[arules irlba Matrix proxy registry]; }; recommenderlabBX = derive2 { name="recommenderlabBX"; version="0.1-1"; sha256="042yh0h8qxj7n9hysrfdxnpb3g0zb6s5b683s7hn5mjc55q7nn4g"; depends=[recommenderlab]; }; - recommenderlabJester = derive2 { name="recommenderlabJester"; version="0.1-1"; sha256="1ygdq7wd970yi7298i62r22fg657bswwkmqjabph7if6b13fjyfb"; depends=[recommenderlab]; }; - reconstructr = derive2 { name="reconstructr"; version="1.1.0"; sha256="1kswvpmhk3zzwm4nv6pjb80ww95n9bd4q9j7bhk9kql8v5mnfg5m"; depends=[Rcpp]; }; - recosystem = derive2 { name="recosystem"; version="0.3"; sha256="064rnnz4m85mwq3084m0ldj8sb5z6jwzqzkh22fagsq2xyqri15l"; depends=[Rcpp]; }; - reda = derive2 { name="reda"; version="0.2.1"; sha256="0c96vs8h0g551gb5vxrlw2q1yzca4nwg579nwysxm7z16zn7p05k"; depends=[ggplot2 plyr]; }; + recommenderlabJester = derive2 { name="recommenderlabJester"; version="0.1-2"; sha256="0kr9xc2gih2myn1a8h8dxxmdhibv1sjwjsvlrj9d5hvd1mgfhks5"; depends=[recommenderlab]; }; + reconstructr = derive2 { name="reconstructr"; version="2.0.0"; sha256="1pa6b8zns9495f1bdifvx19hsy5808hqbxb2bn1srwnr4s3ma1zi"; depends=[openssl Rcpp]; }; + recosystem = derive2 { name="recosystem"; version="0.4"; sha256="1h8147x9caxxprxpgzk7qj9nkafbi34zhcnaksdpv95k7vnhs4ps"; depends=[Rcpp]; }; + red = derive2 { name="red"; version="0.2.0"; sha256="0vpwx8lv0jhddcw2cypdhvchgrrkxx8l70yhsp5415mgdkmpp5x2"; depends=[BAT dismo geosphere igraph maptools raster rgdal rgeos rJava sp]; }; + reda = derive2 { name="reda"; version="0.3.1"; sha256="0313x4vm0jm0lgzspv0ldsblmjgy13dqbsafpikkh603k5pkq1js"; depends=[ggplot2 splines2]; }; redcapAPI = derive2 { name="redcapAPI"; version="1.3"; sha256="08js2lvrdl9ig0pq1wf7cwkmvaah6xs65bgfysdhsyayx0lz5rii"; depends=[chron DBI Hmisc httr stringr]; }; - reddPrec = derive2 { name="reddPrec"; version="0.2"; sha256="1s4xs98d7zkkgsvdyyck3ra7yhc1sg6pq89rf4rskmj9jp6h5x0d"; depends=[snowfall]; }; - redist = derive2 { name="redist"; version="1.2"; sha256="1169dh4v8mq1ag1crqmn9apyd0280qf2l0df6xwy7263gvmnqdmy"; depends=[coda Rcpp RcppArmadillo sp spdep]; }; - redland = derive2 { name="redland"; version="1.0.17-7"; sha256="1frn3gxzs9v1k0hlw0r0ckgjynanmrx63njlgh085i5bw4n9bzbg"; depends=[roxygen2]; }; + reddPrec = derive2 { name="reddPrec"; version="0.3"; sha256="01dsgd28ps1f32l3ppz4fbzihs5i79zb1nqg9r3b21fsx1ly44d6"; depends=[snowfall]; }; + redist = derive2 { name="redist"; version="1.3"; sha256="19d5m17b8rzy9fsl95r0zdr5swawdbdbg0pib85028f8pqh9g5f1"; depends=[coda doParallel foreach Rcpp RcppArmadillo sp spdep]; }; + redland = derive2 { name="redland"; version="1.0.17-9"; sha256="01jx6r7zznb6cpi2bx36fpsgig3bkc1nv9afz5s2nfqisxiq48w5"; depends=[roxygen2]; }; ref = derive2 { name="ref"; version="0.99"; sha256="0f0yz08pqpg57mcm7rh4g0rbvlcvs5fbpjkfrq7fmj850z1ixvw0"; depends=[]; }; - refGenome = derive2 { name="refGenome"; version="1.6.0"; sha256="0pn27m38x6xjpxrfvg92wwkx3syvvssy9dzn2djbq3lagvrz3k3z"; depends=[DBI doBy RSQLite]; }; + refGenome = derive2 { name="refGenome"; version="1.7.0"; sha256="0xj5mqk7i4bl6ffdx346q558sn8hmqlkfpiv7ggrfhaqg02f6war"; depends=[DBI doBy RSQLite]; }; referenceIntervals = derive2 { name="referenceIntervals"; version="1.1.1"; sha256="04199nxh216msaghkp66zsi96h76a7c42ldml0fm66v2vamcslg8"; depends=[boot car extremevalues outliers]; }; + refimpact = derive2 { name="refimpact"; version="0.1.0"; sha256="03634gmfr423bjygdxcpgmnh9nm2l86rfmvkvq74qymwc2gl6l6p"; depends=[curl jsonlite tibble]; }; + refnr = derive2 { name="refnr"; version="0.1.0"; sha256="1gjjzxpyxm1kf1pqk99bd7f2j85rzmww3r1268bccivf19rs881i"; depends=[]; }; refset = derive2 { name="refset"; version="0.1.0"; sha256="0yj87sp6ghxv20hz5knmw3d7way1hsggk759wqxsbfprd38y6khd"; depends=[]; }; - refund = derive2 { name="refund"; version="0.1-14"; sha256="17hig8zr8sj5jjxxrfr3bhvhhbimns92dzf3b7ybf94vzvrm8wg8"; depends=[boot fda gamm4 ggplot2 grpreg lattice lme4 magic MASS Matrix MCMCpack mgcv nlme pbs RLRsim]; }; - refund_shiny = derive2 { name="refund.shiny"; version="0.2.0"; sha256="1m7s9xnh7p7z7lc0dyizdmfnq3ksc782d3vavqrcakswjrkk3rir"; depends=[dplyr ggplot2 gridExtra lme4 refund reshape2 shiny]; }; + refund = derive2 { name="refund"; version="0.1-16"; sha256="0npq12bf3qmcbgwdxilwvzvf5x2m3qrxljlsx1sz9xczms2dz7kg"; depends=[boot fda gamm4 ggplot2 grpreg lattice lme4 magic MASS Matrix mgcv nlme pbs RLRsim]; }; + refund_shiny = derive2 { name="refund.shiny"; version="0.3.0"; sha256="0r2xrm4wz35wn9zg4vvw2ysl7zzbz9i080vnbrlp4yrhhlkhpkm1"; depends=[dplyr ggplot2 gridExtra lme4 plotly refund reshape2 shiny tidyr]; }; refund_wave = derive2 { name="refund.wave"; version="0.1"; sha256="1vnhg7gi5r8scwivqjwhrv72sq8asnm4whx3jk39saphdxpk5hxv"; depends=[glmnet wavethresh]; }; regRSM = derive2 { name="regRSM"; version="0.5"; sha256="0nbp3yjk9r7qvwm7wla39155rmqnvpdb720iq3b0hcy1bbsxbk9s"; depends=[doParallel foreach Rmpi]; }; + regclass = derive2 { name="regclass"; version="1.5"; sha256="0kha9b5ki55ggwh8cmlphg1alf1dq8if5dknisfbvd3f2x4dqf02"; depends=[bestglm leaps randomForest rpart rpart_plot VGAM]; }; + regexPipes = derive2 { name="regexPipes"; version="0.0.1"; sha256="1hk0rhvmgzcyf5cyl8hjznl3ll25kpasqikfr6nxd6ian2slvmmb"; depends=[]; }; regexr = derive2 { name="regexr"; version="1.1.0"; sha256="1gjv4wl4gjsh5rr0kz057x9j4dhikrm3zzlmxlhd1f9srjdmcdzy"; depends=[]; }; registry = derive2 { name="registry"; version="0.3"; sha256="0c7lscfxncwwd8zp46h2xfw9gw14dypqv6m2kx85xjhjh0xw99aq"; depends=[]; }; reglogit = derive2 { name="reglogit"; version="1.2-4"; sha256="0ma1wddxhmja268ddkpcvskqf4lwq61brswnm600fms8ks7r78d3"; depends=[boot Matrix mvtnorm]; }; regpro = derive2 { name="regpro"; version="0.1.1"; sha256="02axbq63hsqwg3q2ixr0lpsdai9q6wj57s5k1343q9m0pw90vr73"; depends=[denpro]; }; regress = derive2 { name="regress"; version="1.3-14"; sha256="0qnks28fr8siq95iiiqyvz82cbdg14i18rj7g9rqyjhiam12fshl"; depends=[]; }; regsel = derive2 { name="regsel"; version="0.2"; sha256="0wwwpawqsqimaldy0zxnqsy23nwp30ypa5dnrnndwhbs4qz99c9w"; depends=[elasticnet glmnet]; }; + regsem = derive2 { name="regsem"; version="0.5.0"; sha256="0ajva492a0z0q1ixdh24w10vbq7fknn66cyjzla5aqcmc5gggp7g"; depends=[lavaan Rcpp RcppArmadillo]; }; + regspec = derive2 { name="regspec"; version="2.4"; sha256="18i6k2wqaddrc0dz7v8x3s9205dcfwanqhpnxa9hkpyqzbb17pd3"; depends=[]; }; regsubseq = derive2 { name="regsubseq"; version="0.12"; sha256="0879r4r8kpr8jd6a3fa9cifm7cv0sqzz8z1alkm1b2fr1625md3g"; depends=[]; }; regtest = derive2 { name="regtest"; version="0.05"; sha256="1wrrpp2hvkas0yc512gya3pvd0v97pn4v51k5jxkwyd1pp68zd1q"; depends=[]; }; - rehh = derive2 { name="rehh"; version="1.13"; sha256="0hi9bfclai1b948yq9fp1q7rxb8nwvdm368l09la8ghlgxi5lnm8"; depends=[gplots]; }; - relMix = derive2 { name="relMix"; version="1.0"; sha256="1p6zpbilfyfsaa39a54xm4yvqapamlxydzzcr0g6m60abrsdwhg5"; depends=[Familias paramlink]; }; + regtools = derive2 { name="regtools"; version="1.0.1"; sha256="0807r8721qmdl8ahvlzcvqaq2rfvlvhblwbwdpi79fm7dk8vvq1i"; depends=[car dummies FNN mvtnorm]; }; + rehh = derive2 { name="rehh"; version="2.0.2"; sha256="00wxx6w9ahddrg3lz14cqyg3dn0rfcxwy1z8arhdp1pn8d48pahw"; depends=[gplots rehh_data]; }; + rehh_data = derive2 { name="rehh.data"; version="1.0.0"; sha256="1jkvwmnnmfa7iyvrabgcfzw3vfzx0dlgq47s6yf4zayi437v4di0"; depends=[]; }; + reinstallr = derive2 { name="reinstallr"; version="0.1.4"; sha256="1fcmy2cyqy4zwh815j2jbmziaiq6kypwsnj5bx0f10dlq3522m5q"; depends=[]; }; + rel = derive2 { name="rel"; version="1.2.0"; sha256="0x68zivcydczq7rxxzjbgif8c4qbmp80nbz78f7292xlbzc39hjx"; depends=[]; }; + relMix = derive2 { name="relMix"; version="1.2.2"; sha256="03mn7rnx2kh7v4alfvkiw3iakxi9dkfnmhgqsdfld3qrijjp1i6y"; depends=[Familias gWidgets paramlink]; }; relSim = derive2 { name="relSim"; version="0.2-0"; sha256="0cqcp7r263sk874l17wz84mzm4b1dxbfbsk74937rcz1wfc623k5"; depends=[Rcpp]; }; rela = derive2 { name="rela"; version="4.1"; sha256="00ksm7zh1mpd2d5c5d823id3sxj0h3x0ccg6a40fadibvr1ay3ny"; depends=[]; }; + relabeLoadings = derive2 { name="relabeLoadings"; version="1.0"; sha256="16gxdrhkaaa33hypnsacn4vd1g3lbqdl3j8p8va54v777c561g81"; depends=[]; }; relaimpo = derive2 { name="relaimpo"; version="2.2-2"; sha256="1rxjg2yw2gyshaij98w83cshxwscnq3ql7bg13n7v4nbjsi1l6zh"; depends=[boot corpcor MASS mitools survey]; }; relations = derive2 { name="relations"; version="0.6-6"; sha256="1sl22wmnxh957dyw6rwv50ihrf27k7ak66w7avvf9llm0a0d6gsf"; depends=[cluster sets slam]; }; relax = derive2 { name="relax"; version="1.3.15"; sha256="0cgvxw3pmy9kx8p81bb5n5nnbn6l9hm07k6hdy7p2j2gl15xxnpq"; depends=[]; }; relaxnet = derive2 { name="relaxnet"; version="0.3-2"; sha256="1l83rk7r4vkcxbfljmibzm8lzpx0vf406hv4h5cy9x0k3rz2bfh0"; depends=[glmnet]; }; relaxo = derive2 { name="relaxo"; version="0.1-2"; sha256="1rzmq7q3j271s6qwwrmwidv0vxcjpgjhyiqgr6fkczkai2lbnd8x"; depends=[lars]; }; - reldist = derive2 { name="reldist"; version="1.6-4"; sha256="0v86wws29zy67jidrvfxkfwhpxppqrpq5h3b22cjif5qjqz3kk8f"; depends=[mgcv]; }; + reldist = derive2 { name="reldist"; version="1.6-6"; sha256="09vips7spcz0fahrpy0bl15hk43zgnq74h189hmygyi41l95aywa"; depends=[Hmisc mgcv]; }; relen = derive2 { name="relen"; version="1.0.1"; sha256="0br7c3j30a1yc61pyinmk5lvk8zw9rivd0z2096g6crgmbzix8ml"; depends=[]; }; relevent = derive2 { name="relevent"; version="1.0-4"; sha256="10bf1s7jmas8ck1izqibqcaqg4z55ciwdpd9pm2697y8z0jhr2rj"; depends=[coda sna trust]; }; reliaR = derive2 { name="reliaR"; version="0.01"; sha256="000nafjp386nzd0n57hshmjzippiha6s6c4nfrcwl059dzmi088i"; depends=[]; }; - relimp = derive2 { name="relimp"; version="1.0-4"; sha256="1i9j218b6lh6ag4a8x4vwhmqqclbzx46mpwd36s8hdqayzs6lmad"; depends=[]; }; - relsurv = derive2 { name="relsurv"; version="2.0-7"; sha256="107xn5an8ggwpsp5dhk88xglfkd90d06f63akd09vwaax92rws1y"; depends=[date survival]; }; + relimp = derive2 { name="relimp"; version="1.0-5"; sha256="0ydn82g8xdqzhf34187080bbpcpw1zdjbj2i3dv1d6d35vvprb5c"; depends=[]; }; + relsurv = derive2 { name="relsurv"; version="2.0-9"; sha256="1laykfmzv4yfkj406iag0s8cdms662y9fdrxfd29spj47zniy9ym"; depends=[date survival]; }; rem = derive2 { name="rem"; version="1.1.2"; sha256="0m0lhv8hc6p0d7nmjig2678n7qrb9c15jkdqrx946f42k1f1dz6f"; depends=[flexsurv Rcpp survival]; }; remMap = derive2 { name="remMap"; version="0.2-0"; sha256="1k2niiaq2lr4inrx443clff9cqqvyiiwd45k7yqjd8ixnbaa3mrk"; depends=[]; }; + rematch = derive2 { name="rematch"; version="1.0.1"; sha256="0y3mshvpvz9csmq8hk8jbabx4nxlv5sckvfzvm6920ndg34xw2d4"; depends=[]; }; remix = derive2 { name="remix"; version="2.1"; sha256="0s1gaf7vj08xd4m7lc9qpwvk0mpamabbxk71970mfazx6hk24dr0"; depends=[ascii Hmisc plyr survival]; }; - remote = derive2 { name="remote"; version="1.0.0"; sha256="09840z50x5i8bsi49s3asqhcz84z16pyq9w50yay4h8x82w3hfh3"; depends=[foreach raster Rcpp]; }; - remoter = derive2 { name="remoter"; version="0.2-0"; sha256="08wn0p95rj39s0df38jqs9bf52fw5a6m92sbn7kfspb81q1fzx8k"; depends=[assertthat pbdZMQ sodium]; }; - rentrez = derive2 { name="rentrez"; version="1.0.1"; sha256="1viw6lcjl26yq8yna8mfhriphvdjq8nnkbds0yq66fmah44l493v"; depends=[httr jsonlite XML]; }; + remote = derive2 { name="remote"; version="1.2.1"; sha256="1ihzjxbvas7396cwsi9am4pl94naxa9dnhbnh8k0l5p4a50mk33w"; depends=[gridExtra latticeExtra mapdata raster Rcpp scales]; }; + remoter = derive2 { name="remoter"; version="0.3-2"; sha256="0r7hm5cdbmkfn8lv07mn0lb1qq1g92l0hznjih1ykymjm3h6qyh0"; depends=[assertthat getPass pbdZMQ]; }; + remotes = derive2 { name="remotes"; version="1.0.0"; sha256="03qwh7wb5zn08r1n5bylnb9615p0qsbx1ca644b528mf0pm7i7yc"; depends=[]; }; + rentrez = derive2 { name="rentrez"; version="1.0.4"; sha256="03gfq6d0vs3np1x292lzdahhc70npqvzbg9aj9c80amiyhs7c1ad"; depends=[httr jsonlite XML]; }; + repeated = derive2 { name="repeated"; version="1.1.0"; sha256="0cdyzhhv89186q5nwablcjbqvm7ncq2w5d09iidbajrac9wd1y60"; depends=[rmutil]; }; repfdr = derive2 { name="repfdr"; version="1.1-3"; sha256="15f7x7vqwlpyzvzsybyz825a9dmglbrngjmajrsqlwffypgxjvi8"; depends=[]; }; repijson = derive2 { name="repijson"; version="0.1.0"; sha256="16iypvsmh5r9pk2k6npp17ya5dgkxihsj29pppd3zvdpm3vvd8k1"; depends=[geojsonio ggplot2 jsonlite OutbreakTools plyr sp]; }; replicatedpp2w = derive2 { name="replicatedpp2w"; version="0.1-1"; sha256="0q6mfrdjpx6nh4xgr5i7ka3xvnx9585xdhni020q4pm05rhimid2"; depends=[spatstat]; }; - replicationInterval = derive2 { name="replicationInterval"; version="1.0.0"; sha256="1ll6gyibd41kasc3sn6hvydc6xaacx6h5q5nhj09ha36x4lgr0gb"; depends=[MBESS]; }; + replicationInterval = derive2 { name="replicationInterval"; version="2.0.1"; sha256="1jyvyqr8r2fs1cmbz7zjcc8p116bnkslvx27pqi92y5pxgqvsqvr"; depends=[ggplot2 MASS MBESS pbapply]; }; + replyr = derive2 { name="replyr"; version="0.2.3"; sha256="04qjfsb7cq3x993ai4skkzj1p60y616qpmh3v94n260z0syd2gxj"; depends=[dplyr wrapr]; }; repmis = derive2 { name="repmis"; version="0.5"; sha256="0z5mjbsl24yjbl0aawr35grcal44rf2xbwv1hy7bdkms94ix79b5"; depends=[data_table digest httr plyr R_cache]; }; - repo = derive2 { name="repo"; version="1.0"; sha256="103bjd880hd76qpipryl17l9972hwj5c3dxicjq0dcbdfmdk7q7h"; depends=[digest]; }; + repo = derive2 { name="repo"; version="2.0.2"; sha256="1rgcgl1a0sz3mnj0ny7507bkrlxbbh7ab39jwfm99ssipia12jjh"; depends=[digest]; }; repolr = derive2 { name="repolr"; version="3.4"; sha256="13kmy09c7lk8p1mkdss0krcsfb6d7zcnqpwnl38zkanvh8q3fqhm"; depends=[Matrix Rcpp RcppArmadillo]; }; reportRx = derive2 { name="reportRx"; version="1.0"; sha256="0npiflql0lq8sqp6xgydxbw7xdr0zdxj1s2h4bnpmn4clc05r7m4"; depends=[aod cmprsk geoR reshape stringr survival xtable]; }; - reportr = derive2 { name="reportr"; version="1.2.0"; sha256="00nbkv6s7lydxq1gd532gkfl96dbrdq4p6bmqxnbjhrwx8c3kx6h"; depends=[ore]; }; + reportr = derive2 { name="reportr"; version="1.2.2"; sha256="1fl4hy4ck4aapy152vn9gjd7w5vgvh2gz2ky6p0wwahah7m9b255"; depends=[ore]; }; reports = derive2 { name="reports"; version="0.1.4"; sha256="0r74fjmdqax2x5fhbkdxb8gsvzi6v794fh81x4la9davz6w1fnxh"; depends=[]; }; reporttools = derive2 { name="reporttools"; version="1.1.2"; sha256="1i87xmp7zchcb8w8g7nypid06l2439qyrvpwsjz6qny954w6fa2b"; depends=[xtable]; }; + repr = derive2 { name="repr"; version="0.10"; sha256="06wnmc1xvkf6kzb396qjvn0m71lh1mp2q5p2lh4s20i1l42469cr"; depends=[]; }; represent = derive2 { name="represent"; version="1.0"; sha256="0jvb40i6r1bh9ysfqwsj7s1g933d7z5fq9d618yjrqr6hbbqsvac"; depends=[]; }; - reproducer = derive2 { name="reproducer"; version="0.1.4"; sha256="1iraq2aria3sgs63cm4508775y7qnaz1lxrs630nma0ndmjsp2ml"; depends=[ggplot2 gridExtra metafor openxlsx RColorBrewer tm wordcloud xtable]; }; + represtools = derive2 { name="represtools"; version="0.1.2"; sha256="1zkabch49q23kd1786km5cb9wcaccbxds11v9hwjzsgrs15g5w35"; depends=[whisker]; }; + reprex = derive2 { name="reprex"; version="0.1.1"; sha256="0jxsnlspy12dnbpkghkmkr6p6783dhvsk3g9mj7gpn5j74qfk6li"; depends=[callr clipr knitr rmarkdown whisker]; }; + reproducer = derive2 { name="reproducer"; version="0.1.8"; sha256="1yw6d81xg8zqc91x737z0mfx10xcfvd0sr0vs8afvhbqnxbjk3jg"; depends=[ggplot2 gridExtra lme4 MASS metafor openxlsx xtable]; }; request = derive2 { name="request"; version="0.1.0"; sha256="1q7zd6q00gdqmgq7s7nq1ixmns8zn2amr5zah9rwnsn8dkllj9yh"; depends=[curl httr jsonlite lazyeval magrittr R6 whisker]; }; + requireR = derive2 { name="requireR"; version="1.0.0.1"; sha256="192l7i3q7s2a6n737an3fn258agjsdzh0q2w0vc8jbz7v4f3i92d"; depends=[]; }; rerddap = derive2 { name="rerddap"; version="0.3.4"; sha256="1rfcql21kd39q5r1827scqxs124x3vkvxazdqp13g5qyalmdvb30"; depends=[data_table digest dplyr httr jsonlite ncdf4 xml2]; }; resample = derive2 { name="resample"; version="0.4"; sha256="1rckzm2p0rkf42isc47x72j17xqrg8b7jpc440kn24mqw4szgmgh"; depends=[]; }; + resampledata = derive2 { name="resampledata"; version="0.2.0"; sha256="1s683jhrpkhcn7cxjx5cipgkrbmhk5jr7hxniwc8ka7cbq3y22wl"; depends=[]; }; resemble = derive2 { name="resemble"; version="1.2.2"; sha256="189a6b1y720w9ff8cyqazd2d3v1msbfw8zdqr5rmilxvxmnspccs"; depends=[foreach iterators Rcpp RcppArmadillo]; }; - reservoir = derive2 { name="reservoir"; version="1.1.4"; sha256="0c7ankmwph38nny24rw9ysqmwhszp8wivpawpf3qdy2wxhm1ygfv"; depends=[gtools]; }; - reshape = derive2 { name="reshape"; version="0.8.5"; sha256="08jm9fb02g1fp9vmiqmc0yki6n3rnnp2ph1rk8n9lb5c1s390f4k"; depends=[plyr]; }; - reshape2 = derive2 { name="reshape2"; version="1.4.1"; sha256="0hl082dyk3pk07nqprpn5dvnrkqhnf6zjnjig1ijddxhlmsrzm7v"; depends=[plyr Rcpp stringr]; }; + reservoir = derive2 { name="reservoir"; version="1.1.5"; sha256="1qvjq8j2gxp6b8m3k3822f9na8a1kbwzzsmq70m763dcq293rgiz"; depends=[gtools]; }; + reshape = derive2 { name="reshape"; version="0.8.6"; sha256="1f1ngalc22knhdm9djv1m6abnjqpv1frdzxfkpakhph2l67bk7fq"; depends=[plyr]; }; + reshape2 = derive2 { name="reshape2"; version="1.4.2"; sha256="0swvjmc9f8cvkrsz463cp6snd8bncbv6q8yrfrb4rgkr0dhq6dvd"; depends=[plyr Rcpp stringr]; }; reshapeGUI = derive2 { name="reshapeGUI"; version="0.1.0"; sha256="0kb57isws8gw0nlr6v9lg06c8000hqw0fvhfjsjyf8w6zwbbq3zs"; depends=[gWidgets gWidgetsRGtk2 plyr reshape2]; }; + respirometry = derive2 { name="respirometry"; version="0.3.1"; sha256="1v2i86zz2avyh0q3h2mjq6b967yi26xv7vwa66c390viiqrv4hpg"; depends=[birk lubridate marelac measurements seacarb]; }; + restfulr = derive2 { name="restfulr"; version="0.0.8"; sha256="1dysvw757fcnmz94an8wzcq7h334f3j8lgv4j5w4lhgaa1949m94"; depends=[RCurl rjson S4Vectors XML yaml]; }; restimizeapi = derive2 { name="restimizeapi"; version="1.0.0"; sha256="1ss6fng5pmqg6cafc256g9ddz8f660c68ysxfan6mn4gdaigz7lb"; depends=[RCurl RJSONIO]; }; restlos = derive2 { name="restlos"; version="0.2-2"; sha256="083w1ldax8bnf3w4119damma2nz75c3ki187b0275i1mqxqrixp7"; depends=[geometry igraph limSolve rgl som]; }; restorepoint = derive2 { name="restorepoint"; version="0.1.7"; sha256="101lh84jsz84q0ch0j5adsjgza4ggv9xvwbq0d5wik7z5wa39pa6"; depends=[]; }; - resumer = derive2 { name="resumer"; version="0.0.1"; sha256="1xl1jl6bvjlx2djfm8k0za1wcrimsfc77qk6zybbxls0srayh7c4"; depends=[dplyr rmarkdown useful]; }; + restrictedMVN = derive2 { name="restrictedMVN"; version="1.0"; sha256="0qynkg244gzq0yjb0716w7g1sxdq66i11ss8jij86h2mz3ykj137"; depends=[MASS]; }; + restriktor = derive2 { name="restriktor"; version="0.1-55"; sha256="1yrzx7w14s04ppc16iw2hialx1k6k45ag9702vm8cnf31hm14kxp"; depends=[boot ic_infer lavaan MASS mvtnorm quadprog]; }; + resumer = derive2 { name="resumer"; version="0.0.3"; sha256="0ilya3v75989zqm16x69w4599ax2s5j2n6f16bmhwydrmzxs1g48"; depends=[dplyr rmarkdown useful]; }; rethinker = derive2 { name="rethinker"; version="1.0.0"; sha256="0a28r0rkg4m6jsrvczkkpdqrca3q5l5pgb4wyz6pvy5scjlvmpls"; depends=[rjson]; }; retimes = derive2 { name="retimes"; version="0.1-2"; sha256="019sllyfahlqnqry2gqw4w5cy4cavrqnwpwrbb25cgjpdb19raja"; depends=[]; }; retistruct = derive2 { name="retistruct"; version="0.5.10"; sha256="1wg2a906y09hcqba42hh9r2x59w35dms2aa5mw44avigc1nwm0s2"; depends=[foreign geometry png R_matlab rgl RImageJROI RTriangle sp ttutils]; }; - retrosheet = derive2 { name="retrosheet"; version="1.0.2"; sha256="079rfc55sy315i7zhv1a8r6drgpiglbf3b4gwyria2mfbn94a5qb"; depends=[data_table RCurl stringi XML]; }; - reutils = derive2 { name="reutils"; version="0.2.2"; sha256="0byp2kh1g7zi391y55b2y34gbg5x459xn6ydz8ns2qah2aqciqwk"; depends=[assertthat jsonlite RCurl XML]; }; + reutils = derive2 { name="reutils"; version="0.2.3"; sha256="09dhf4s7wz3anrkzqi16abx64gk8ck2142kfd8pv71mjy3x548l7"; depends=[assertthat jsonlite RCurl tibble XML]; }; reval = derive2 { name="reval"; version="2.0.0"; sha256="1yxkyc6wdp5h3cp8i42a9cf0b1cwr4nmpd7svlp7bpfxlcnqqa0d"; depends=[doParallel foreach]; }; + revdbayes = derive2 { name="revdbayes"; version="1.0.0"; sha256="1q6fad3jpvpj0k976010i18ias540k0b2skiw7jk5z1zj9rrxi10"; depends=[rust spatstat]; }; revealedPrefs = derive2 { name="revealedPrefs"; version="0.2"; sha256="1f871y4wkjznzgwxfbnmrfiafq43cyf0i5hjy68ybxc7bbvfryxc"; depends=[Rcpp RcppArmadillo]; }; - revealjs = derive2 { name="revealjs"; version="0.6"; sha256="1pyl20zbsy9m3g0shfv4d4cv7019zxz4329c3l8v3jaqbd1rmlas"; depends=[rmarkdown]; }; + revealjs = derive2 { name="revealjs"; version="0.8"; sha256="0cv410k7nflzkwz7g7zvc86wsmqz0kxlciz7mms7bixrwvqq2w0a"; depends=[rmarkdown]; }; reweight = derive2 { name="reweight"; version="1.2.1"; sha256="0fv7q1zb3f4vplg3b5ykb1ydwbzmiajgd1ihrxl732ll8rkkfa4v"; depends=[]; }; rex = derive2 { name="rex"; version="1.1.1"; sha256="0cs13hqv2wb549rhq84psky401pz8r41ia7c0pnyvhxfa2l6zrr8"; depends=[lazyeval magrittr]; }; rexpokit = derive2 { name="rexpokit"; version="0.24.1"; sha256="143zi6qb0l8vbx87jf58v1zfxqmvv6x4im1knd6q4dpp9gffqs22"; depends=[Rcpp SparseM]; }; - rfPermute = derive2 { name="rfPermute"; version="2.0"; sha256="166zcpz7zdl7rh5dkl1bbsfnpllk7k83r7pkhmfnk92mwn94sx4v"; depends=[abind ggplot2 gridExtra randomForest]; }; - rfUtilities = derive2 { name="rfUtilities"; version="1.0-2"; sha256="1hhiyrvz25pf1fxzcmaf8m5c3v57hxv8qvmrk2a87wdsrklh073c"; depends=[randomForest]; }; + rfPermute = derive2 { name="rfPermute"; version="2.1.5"; sha256="0c7yi395j640mvnr1qlm9hy1w6vva33fa2lqb3amzkafy4j1cs63"; depends=[abind ggplot2 gridExtra randomForest reshape2 swfscMisc]; }; + rfUtilities = derive2 { name="rfUtilities"; version="2.0-0"; sha256="0jwn1rs4a8y7syyv8sgvkjpi69y5jv59xlznm5a3j4pidj5kxf10"; depends=[randomForest]; }; rfigshare = derive2 { name="rfigshare"; version="0.3.7"; sha256="1qgzn0mpjy4czy0pnbi395fxxx84arkg8r7rk8aidmd34584gjiq"; depends=[ggplot2 httpuv httr plyr RJSONIO XML yaml]; }; - rfishbase = derive2 { name="rfishbase"; version="2.1.0"; sha256="00q5r3h7s7m6x9vajm1j194g38h6z1c54ndc3044xjp2zkk7l5lp"; depends=[dplyr httr lazyeval tidyr]; }; + rfishbase = derive2 { name="rfishbase"; version="2.1.1"; sha256="17xkbn930vczxc8b9bljambzhc5j14b7fjswbrl8c8ygdhcd436n"; depends=[dplyr httr lazyeval tidyr]; }; rfisheries = derive2 { name="rfisheries"; version="0.2"; sha256="16j3hn1py8khqadmh81qsg76c62wzqkaq3fn39z0z5mgynmcm62j"; depends=[assertthat data_table ggplot2 httr rjson]; }; + rflann = derive2 { name="rflann"; version="1.3"; sha256="1y8m52vlrcl69srssd23zgg90yfhh9rryd16hk1dnqg713qhksgm"; depends=[Rcpp RcppArmadillo]; }; rfml = derive2 { name="rfml"; version="0.1.0"; sha256="133adpfjpp14m47841k6ybq9lrvby9bxgr5zs4i3akjr2575nq1j"; depends=[httr jsonlite PKI XML]; }; - rfoaas = derive2 { name="rfoaas"; version="0.1.8"; sha256="1q4c93isdv1cjwb66rr3krpw69anhr5z2pw2z1fgq4v94nr69mf8"; depends=[httr]; }; - rfordummies = derive2 { name="rfordummies"; version="0.1.2"; sha256="1x4qmjvnzsj0wkzyl1pzaf3b66lhyb4bk72j33bxgr8gb8bzrhp1"; depends=[]; }; + rfoaas = derive2 { name="rfoaas"; version="1.1.0"; sha256="15a49s84xyyv324gf15avgxa4cj7dpbmlxcgsrnddxy661yd3bg5"; depends=[httr]; }; + rfordummies = derive2 { name="rfordummies"; version="0.1.3"; sha256="13jqvww65wzac1c8ajkljz89vi4j76y9ga52w3ygajjzg0rn15l5"; depends=[]; }; rforensicbatwing = derive2 { name="rforensicbatwing"; version="1.3"; sha256="0ff4v7px4wm5rd4f4z8s4arh48hgayqjfpnni2997c92wlsq3d12"; depends=[Rcpp]; }; rgabriel = derive2 { name="rgabriel"; version="0.7"; sha256="1c6awfppm1gqg7rm3551k6wyhqvjpyidqikjisg2p2kkhmyfkyzx"; depends=[]; }; rgam = derive2 { name="rgam"; version="0.6.3"; sha256="0mbyyhhyr7ijv2sq9n7g0vaxivngwf4nbb5398xpsh7fxvgw5zdw"; depends=[Rcpp RcppArmadillo]; }; - rgbif = derive2 { name="rgbif"; version="0.9.2"; sha256="1lacxm2dyhqvcvkmfxfzg02wiyp7hmkfi8c4xizxsfv29kr2xphh"; depends=[data_table ggplot2 httr jsonlite magrittr oai V8 whisker xml2]; }; + rgbif = derive2 { name="rgbif"; version="0.9.7"; sha256="1ajwmxk8pgmgba2vv4pw424zzsjbx0z5ppsavmiy6zjxns7l5rbn"; depends=[data_table geoaxe ggplot2 httr jsonlite magrittr oai tibble V8 whisker xml2]; }; rgcvpack = derive2 { name="rgcvpack"; version="0.1-4"; sha256="1vlvw9slrra18qaizqk2xglzky0i6z3bsan85x908wrg8drss4h5"; depends=[]; }; - rgdal = derive2 { name="rgdal"; version="1.1-3"; sha256="0ah2qsrz050pbkyijasqc22xvfgsyh0djb8ma3ixfsyrfrflnbpa"; depends=[sp]; }; + rgdal = derive2 { name="rgdal"; version="1.2-5"; sha256="03bi89n2n80lr0v99s130yl256nf3ww5hr02kpb2lawzz8d3rb7v"; depends=[sp]; }; rgenoud = derive2 { name="rgenoud"; version="5.7-12.4"; sha256="19y0297fsxggjrdjv8n3a5klbqf8y3mq4mmdz6xx28cz3k65dk4n"; depends=[]; }; - rgeolocate = derive2 { name="rgeolocate"; version="0.5.0"; sha256="0n680a9wnw2xvql0584kqrs22ymj9rr1lbr670j55y6far9pwa0m"; depends=[httr Rcpp]; }; - rgeos = derive2 { name="rgeos"; version="0.3-17"; sha256="0m05cc7wdswy0p2qdh4zz1p5zm6lwyhdqrkvws0s86zcl4l1z96c"; depends=[sp]; }; + rgeoapi = derive2 { name="rgeoapi"; version="1.1.0"; sha256="0k8p1l0vrgx0bifbc2i9gxxwih513vbqhjh7fiifyfq3r74i4j7k"; depends=[httr magrittr rjson]; }; + rgeolocate = derive2 { name="rgeolocate"; version="1.0.0"; sha256="0mac4rzgw4lp47rp9nxs7dgw0dzdxnb144an2zj8fcsnvm462vjg"; depends=[httr Rcpp]; }; + rgeos = derive2 { name="rgeos"; version="0.3-22"; sha256="0bl5hwf0gn5dnm5v35hpkp1w7aiy3hzf2k9nrv70j33d7r8gbnif"; depends=[sp]; }; + rgeospatialquality = derive2 { name="rgeospatialquality"; version="0.3.2"; sha256="19g685bz9x7jbn8mmz0yy6mr3qhkjdvvglhfxxh45mjvi2dz5aj8"; depends=[httr jsonlite plyr]; }; rgexf = derive2 { name="rgexf"; version="0.15.3"; sha256="0iw1vk32ad623aasf6f8hl0qkj59f1dsc2riwqc775zvs5w7k2if"; depends=[igraph Rook XML]; }; - rggobi = derive2 { name="rggobi"; version="2.1.20"; sha256="1a7l68h3m9cq14k7y96ijgh0iz3d6j4j2anxg50pykz20lnykr9g"; depends=[RGtk2]; }; - rgho = derive2 { name="rgho"; version="0.0.1"; sha256="0zdxq24jrvgl933ww5n0pp9psri99364ibxrvawc42rnv8220gjr"; depends=[curl dplyr httr lazyeval magrittr memoise readr tidyr xml2]; }; - rgl = derive2 { name="rgl"; version="0.95.1441"; sha256="1ryqz7pn9ag35lkpnfhm4w3zahm2j47dyd03h7bcrg535ilr4afn"; depends=[]; }; + rggobi = derive2 { name="rggobi"; version="2.1.21"; sha256="0zi4rhggngm0y8dsjxqlr2mmfc5wzi7l1qcp5gin4bjlbyf8yb3z"; depends=[RGtk2]; }; + rgho = derive2 { name="rgho"; version="1.0.1"; sha256="0jkfmyn3i50vsqciy96wd2fpik6yfg0sz6rrhwb04jv1dmyz2nfa"; depends=[curl dplyr httr jsonlite lazyeval magrittr memoise readr tibble tidyr]; }; + rgl = derive2 { name="rgl"; version="0.97.0"; sha256="0firba0rvp8kc5w2s1glzk72m2awkg4c2vsd3xhp9b247dvr1aj2"; depends=[htmltools htmlwidgets jsonlite knitr magrittr shiny]; }; rglobi = derive2 { name="rglobi"; version="0.2.9"; sha256="15kc3gb998ryrnpw6nn87vsg63xknchs0hbl33g9napyj5wjmmiw"; depends=[RCurl rjson]; }; - rglwidget = derive2 { name="rglwidget"; version="0.1.1434"; sha256="1483l8gfxnmdps22aiqxnxginc383sj0105bj8d620q9y041625z"; depends=[htmltools htmlwidgets jsonlite knitr magrittr rgl shiny]; }; + rglwidget = derive2 { name="rglwidget"; version="0.2.1"; sha256="0siqxn3gyl98i84p0yha821b4rdrp2i0942mkx819wnf7qwrpqcv"; depends=[rgl]; }; rgp = derive2 { name="rgp"; version="0.4-1"; sha256="1p5qa46v0sli7ccyp39iysn04yvq80dy2w1hk4c80pfwrxc6n03g"; depends=[emoa]; }; rgpui = derive2 { name="rgpui"; version="0.1-2"; sha256="0sh5wj4f2wj6g3r7xaq95q89n0qjavchi5kfi6sj1j34ykybbs3g"; depends=[emoa rgp shiny]; }; rgr = derive2 { name="rgr"; version="1.1.13"; sha256="1l6cf3hmi6mzsqg6dpnw90a6ljhvwar4rjjkamx4mc9hlfsrkggq"; depends=[fastICA MASS]; }; - rgrass7 = derive2 { name="rgrass7"; version="0.1-4"; sha256="0ify8djj3q63xl6d1v4wa7s92rvmraanl8z9l4nd4a59ga09c3s1"; depends=[sp XML]; }; - rhandsontable = derive2 { name="rhandsontable"; version="0.3.1"; sha256="0mwzy5l86fg7wmjd94a4bx8gsqrqyczkx558ggw5izbcj6n44g3k"; depends=[htmlwidgets jsonlite magrittr]; }; + rgrass7 = derive2 { name="rgrass7"; version="0.1-9"; sha256="079rkzxpp6l9gppnag83sq87y5l6pby3k0dg32065sr758yr3vx0"; depends=[sp XML]; }; + rgw = derive2 { name="rgw"; version="0.1.0"; sha256="12f7bsfg24cld9y47jyqxswgc1bk4adbhhdpycapinbcfhyzc91p"; depends=[]; }; + rhandsontable = derive2 { name="rhandsontable"; version="0.3.4"; sha256="1ng97l2x9hyqv3cckis81p5bxm4wndv6sipyxy26x9pnyw9lq3kp"; depends=[htmlwidgets jsonlite magrittr]; }; + rhnerm = derive2 { name="rhnerm"; version="1.1"; sha256="1fkh2pr4kzvqvagdyjlyab7p591s913104gyq05q170gmvlpmiww"; depends=[]; }; + rhoR = derive2 { name="rhoR"; version="1.1.0.0"; sha256="00djh16s144a9cl2z8zm3za1bsnpzd3i5b9nyqad10xlkgll36li"; depends=[]; }; rhosp = derive2 { name="rhosp"; version="1.07"; sha256="09wq96micv9wpr3sx8ir7frkanpy3zi3mwn6rbixw2kxvn5wkkfn"; depends=[]; }; ri = derive2 { name="ri"; version="0.9"; sha256="00y01n9cx95bjhdpnh7vi0xd5p6al3sxbjszbyxafn7m9mygmnhv"; depends=[]; }; riceware = derive2 { name="riceware"; version="0.4"; sha256="0pky0bwf10qcdgg9fgysafr35xbmnr9q0jbh56fawj99nbyj3m70"; depends=[random]; }; - rich = derive2 { name="rich"; version="0.3"; sha256="122xb729xlm8gyb7b3glw4sdvrh98wh89528kcbibpx83bp3frc0"; depends=[boot permute vegan]; }; - ridigbio = derive2 { name="ridigbio"; version="0.3.3"; sha256="02cxjnvlr9pk3dyc89xvgppw1mjbi3jahddcsqck4dl6ifb6cj2v"; depends=[httr jsonlite plyr]; }; + rich = derive2 { name="rich"; version="1.0.1"; sha256="0kasr9gb85qhngfayqy3fvrsr0a066krwxsx21nsxcnss0mrqygr"; depends=[boot vegan]; }; + ridigbio = derive2 { name="ridigbio"; version="0.3.5"; sha256="0526nscxynl3857zybpms1wr3230qby29kxglm919pcdvpjb5kz5"; depends=[httr jsonlite plyr]; }; + riem = derive2 { name="riem"; version="0.1.1"; sha256="0lwhsxb4pm26kb65hs8pa63bsbrgy0zchqm4i6pq9f2r9h8vsm1m"; depends=[httr jsonlite lubridate tibble]; }; rinat = derive2 { name="rinat"; version="0.1.4"; sha256="1m5k1wcinm6is3mf86314scgy3xfifz7ly7il5zgqyg9jkkpywbz"; depends=[ggplot2 httr jsonlite maps plyr]; }; rindex = derive2 { name="rindex"; version="0.12"; sha256="1k9zihvrp955c4lh70zjlsssviy2app8w6mv5ln4nawackbz0six"; depends=[regtest]; }; - rio = derive2 { name="rio"; version="0.3.0"; sha256="1drgy70mxy7jn68587h4fwxapjps7iw6d41z02qbq09a4m05py3p"; depends=[curl data_table foreign haven jsonlite openxlsx readODS readxl urltools XML yaml]; }; - rioja = derive2 { name="rioja"; version="0.9-5"; sha256="0bi80d8ffn1kgs0b45ia8rj057id8l3mnph16y5wc5nr8fndxrm4"; depends=[gdata lattice mgcv vegan]; }; + rintrojs = derive2 { name="rintrojs"; version="0.1.2"; sha256="16i6s0km8l22rx2n9kn90z76himfckj387az47snhzbgnwlby3yc"; depends=[jsonlite shiny]; }; + rio = derive2 { name="rio"; version="0.4.16"; sha256="030y9hxsdapwsp9lhz013pyz2kgkrymad09bkc6rzykzqswsf61n"; depends=[csvy curl data_table foreign haven jsonlite openxlsx readODS readr readxl urltools xml2 yaml]; }; + rioja = derive2 { name="rioja"; version="0.9-9"; sha256="19b8j49qsrvcmhlwdaf1xqvwampn8b02dp876czzcgxhgkxvc6yw"; depends=[gdata lattice mgcv vegan]; }; ripa = derive2 { name="ripa"; version="2.0-2"; sha256="0n1gaga0d4bb9qdlm7gksa1nwi4y28kbgwr3icwqgihf1bfb9m81"; depends=[Rcpp]; }; riskR = derive2 { name="riskR"; version="1.1"; sha256="1qadfyb07idfw0bs006kb3917rzda83di6jmsr22941gv78z1wyv"; depends=[]; }; riskRegression = derive2 { name="riskRegression"; version="1.1.7"; sha256="1db331s67w9i84dji05fjh8ml938w2y694gkyq00h14fkmwr9g4g"; depends=[cmprsk pec prodlim randomForestSRC rms survival]; }; riskSimul = derive2 { name="riskSimul"; version="0.1"; sha256="0s2a1mn6g11m96gqscb916caj2aykcs3rkacpqcdnlyzryk1gsnb"; depends=[Runuran]; }; risksetROC = derive2 { name="risksetROC"; version="1.0.4"; sha256="1fh0jf8v536qzf1v3awx3f73wykzicli4r54yg1z926ccqb4h80l"; depends=[MASS survival]; }; rite = derive2 { name="rite"; version="0.3.4"; sha256="196ashcfj5p52qpnpnrkg7vxq87v7vhf1d7z40mk134gmxk2784j"; depends=[knitr markdown RCurl tcltk2]; }; + ritis = derive2 { name="ritis"; version="0.5.4"; sha256="04vjbjqp5b9apafns2snh04hplgcfydzn52v63jgllyrn101vrjk"; depends=[data_table httr jsonlite solrium tibble]; }; riv = derive2 { name="riv"; version="2.0-4"; sha256="1c9k62plqgxcgcm2j1s26hqvgww96n6bfjz2yk7m3p2wf8gkkyam"; depends=[MASS quantreg rrcov]; }; + riverdist = derive2 { name="riverdist"; version="0.13.1"; sha256="1xpl47hhddr5xa1px8fxw8l2hicg78cnz5ak2496f0h662g8zb0w"; depends=[rgdal sp]; }; rivernet = derive2 { name="rivernet"; version="1.0"; sha256="0za5k00k9vivpq4wr1xqc4aw7mlcxhjj2b3iiip1qy13fg7bhbjm"; depends=[]; }; - riverplot = derive2 { name="riverplot"; version="0.5"; sha256="024i1w08c51bflmw608zizif6419xx40sk6pibnqyjnk74p6y7sm"; depends=[]; }; + riverplot = derive2 { name="riverplot"; version="0.6"; sha256="0q1icpny8nkxyjhawyjzwrw8qlz0ayn2xyrsqrm4vkxyv6c9xk8z"; depends=[]; }; rivervis = derive2 { name="rivervis"; version="0.46.0"; sha256="19jsl5g46jcbc0kg47bsif1wrw9z9brgvwdcxqjc89shnx3hzzfv"; depends=[]; }; rivr = derive2 { name="rivr"; version="1.2"; sha256="0ankpfixggwdv17ba8i5iln0zzmngqrhvh3dg8lis9kqg6wa89yr"; depends=[Rcpp]; }; rjade = derive2 { name="rjade"; version="0.1"; sha256="0f1jljj6m1almz0na984n0g314y0rl6a0mx04rbrpipgfgz1h37c"; depends=[V8]; }; rjags = derive2 { name="rjags"; version="4-6"; sha256="1bc9bzq31liawg3nzwfczf75vgg56fnqjw0997xvlic4ghgbn96g"; depends=[coda]; }; rje = derive2 { name="rje"; version="1.9"; sha256="1dyd34z6lb0p6zmyax5dpzflgc9a4saka33mvdfcxi5pj0rnygaz"; depends=[]; }; rjson = derive2 { name="rjson"; version="0.2.15"; sha256="1vzjyvf57k1fjizlk28rby65y5lsww5qnfvgnhln74qwda7hvl3p"; depends=[]; }; - rjstat = derive2 { name="rjstat"; version="0.2.1"; sha256="0chb3mypmgqz7wncl01yy93xpz1mmlcc6x1cib37zxc8dy79jm1s"; depends=[assertthat jsonlite]; }; + rjsonapi = derive2 { name="rjsonapi"; version="0.1.0"; sha256="0qshll0y8b6lbfrqmp69w9kc9hgfrz94dk68nddshk9ilg14lx4d"; depends=[crul jsonlite plumber R6]; }; + rjstat = derive2 { name="rjstat"; version="0.3.0"; sha256="0r772p0a0x6g96k6r26vb6vjxa68mzjslwg71r0wysa9kqhvypm4"; depends=[checkmate jsonlite]; }; rkafka = derive2 { name="rkafka"; version="1.0"; sha256="02h3nlffgd48xm38i2arlrgbilraf6r7k65s35906v33i0kjzrgg"; depends=[rJava rkafkajars RUnit]; }; rkafkajars = derive2 { name="rkafkajars"; version="1.0"; sha256="0ss9gjjq92hba6nkhnda0pbm3a5bqm00hy0zbj4kivg5dlsf30q0"; depends=[rJava RUnit]; }; rknn = derive2 { name="rknn"; version="1.2-1"; sha256="1x9r01314q0wgqwqzd7d13ycjzb4jzghzd3whgjvm2rsmnabai95"; depends=[gmp]; }; rkt = derive2 { name="rkt"; version="1.4"; sha256="01c8fwnml1n0sw5lw9p2nz15i1zhxirr0kh39qvjmdiw97c1v1yq"; depends=[]; }; rkvo = derive2 { name="rkvo"; version="0.1"; sha256="0ci8jqf9nc8hb063nckxdnp0nlyr4ghby356lxm00anw44jlmw8v"; depends=[Rcpp]; }; + rlas = derive2 { name="rlas"; version="1.1.0"; sha256="1hdxkjvsqyng67fyf43ykh27xfi510cdy1i8y2dcrg31mwc7r9rs"; depends=[data_table Rcpp]; }; + rld = derive2 { name="rld"; version="1.0"; sha256="1glv4q25z14hcwifwg623h77p4awpsn3nk843pnph4sb3p5qbmn3"; depends=[emdbook MASS survival]; }; rleafmap = derive2 { name="rleafmap"; version="0.2"; sha256="1i2qczipg7lr6fl35lcl896r54jia7libxx83darrfzc1hd9sdcq"; depends=[knitr raster sp]; }; rlecuyer = derive2 { name="rlecuyer"; version="0.3-4"; sha256="0d5mcdzn6f5nhwzs165a24z36d0b8gd0cyfyzffvr6p96h8qydy7"; depends=[]; }; - rlist = derive2 { name="rlist"; version="0.4.6"; sha256="135zh1nrzlsk1rbzjj8al6zf6im9c7zy081ab0igrxlzsjlrama8"; depends=[data_table jsonlite XML yaml]; }; + rlist = derive2 { name="rlist"; version="0.4.6.1"; sha256="08awy2p7rykc272wvvya4ddszbr7b7s7qv4wr3hs8ylr4jqlh0dv"; depends=[data_table jsonlite XML yaml]; }; rlm = derive2 { name="rlm"; version="1.2"; sha256="18y735z05k9pms6iv1739qg3q12w099qhs42icxhqs5gcdhz92fm"; depends=[]; }; + rlo = derive2 { name="rlo"; version="0.3.2"; sha256="0abq42dhapzmh6hvmildbn8zya29c6p1aqbv8avc03g014dwbrd0"; depends=[PythonInR]; }; + rly = derive2 { name="rly"; version="1.4.2"; sha256="0mppl3y808k9ydn1lwng2bqmdzbbsla2p9p8qk73mp0xyq8iq9sm"; depends=[futile_logger R6]; }; rmaf = derive2 { name="rmaf"; version="3.0.1"; sha256="0w247mamwgibr5576p5c2lzaiz2lv2c25n7gw9q99s7rc4bps7j7"; depends=[]; }; - rmarkdown = derive2 { name="rmarkdown"; version="0.9.5"; sha256="1zz98jxvw3lzva5kkj1n37gbhjwqd96gjs04y6h37pqy6qmkhk8c"; depends=[caTools htmltools knitr yaml]; }; + rmapshaper = derive2 { name="rmapshaper"; version="0.2.0"; sha256="0s5av8hic3b61ch6skvcxkpn9s2r0ylfxilxg8i2dvg4dk13qkna"; depends=[geojsonio geojsonlint readr rgdal sp V8]; }; + rmarkdown = derive2 { name="rmarkdown"; version="1.3"; sha256="1vvxyf3zhyxx6k697lia299456hryp8nh3zr0fc27f3107a8mcjf"; depends=[base64enc caTools evaluate htmltools jsonlite knitr rprojroot yaml]; }; rmatio = derive2 { name="rmatio"; version="0.11.0"; sha256="0cmlh16nf3r94gpczq0j46g4dgjy9q1c647rqd9i14hvfrpxzcfa"; depends=[lattice Matrix]; }; - rmdformats = derive2 { name="rmdformats"; version="0.2"; sha256="1rnc9zz5yl0g3085g9akr410f7bwmyban98gr71kj71zabc5vwgq"; depends=[htmltools knitr questionr rmarkdown]; }; + rmcfs = derive2 { name="rmcfs"; version="1.2.2"; sha256="1fx50z8pb5z1i1gzs4v194k9fdiq40ny5ridxym9ykgqf82ncvsa"; depends=[dplyr ggplot2 igraph reshape2 rJava yaml]; }; + rmcorr = derive2 { name="rmcorr"; version="0.1.0"; sha256="0hrlamr527r02vj86xsip5n7gilrb8y33fy0xi1lkc66hf714vgw"; depends=[mnormt psych pwr RColorBrewer]; }; + rmdHelpers = derive2 { name="rmdHelpers"; version="1.2"; sha256="1ahzbs8z7wvh1dwbq1kq8wrjrknxi2gck63k70gj0swjvgk0ih5r"; depends=[dplyr knitr]; }; + rmdformats = derive2 { name="rmdformats"; version="0.3.1"; sha256="0x0vh1mdxb00k6c2m09szpbx4rqhch8p5zslb5jmbbacslicr1sq"; depends=[bookdown htmltools knitr questionr rmarkdown]; }; + rmdshower = derive2 { name="rmdshower"; version="2.0.0"; sha256="0prxq0zakcm5lh1ki15d1d267yxr43295zcxigpy011lawccaglm"; depends=[rmarkdown]; }; rmeta = derive2 { name="rmeta"; version="2.16"; sha256="1s3n185kk0ddv8v6c7mbc7cpj6yg532r7is6pjf9vda7317rxywy"; depends=[]; }; - rmetasim = derive2 { name="rmetasim"; version="2.0.4.1"; sha256="03dndby95gvx3qfr2fhgar8vvls3ia2hc2xqlmgh977rgaqs7xd1"; depends=[ade4 ape gtools]; }; + rmetasim = derive2 { name="rmetasim"; version="3.0.5"; sha256="0a5pn146ds4biswh59kaddzryd80l54rhcaqsryhmv6pp4ywg5a1"; depends=[ade4 adegenet gtools pegas]; }; rmgarch = derive2 { name="rmgarch"; version="1.3-0"; sha256="0brqjhplvzl0bgsi6x057rb2cg5x372i746dhddr013p1mx0rlcx"; depends=[Bessel ff MASS Matrix pcaPP Rcpp RcppArmadillo Rsolnp rugarch shape spd xts zoo]; }; - rminer = derive2 { name="rminer"; version="1.4.1"; sha256="1rbs5k3jxjbxr3pdlg03591h8yy9nrg8zjq1kcnvmzgza2a25613"; depends=[adabag Cubist e1071 kernlab kknn lattice MASS mda nnet party plotrix pls randomForest rpart]; }; + rminer = derive2 { name="rminer"; version="1.4.2"; sha256="1hjgcawjrwsf0nv2hlznr1cvpm445yyxc6cq28k2yzyivk74si34"; depends=[adabag Cubist e1071 glmnet kernlab kknn lattice MASS mda nnet party plotrix pls randomForest rpart xgboost]; }; rmngb = derive2 { name="rmngb"; version="0.6-1"; sha256="1wyq8jvzqpy1s6w0j77ngh5x2q7mpj0ib01m8mla20w6yr6xbqjk"; depends=[Hmisc]; }; - rmongodb = derive2 { name="rmongodb"; version="1.8.0"; sha256="035a76ak6wi21hdvgzzbggz0qnb53rrr2wfx97ngc8ijwhw8hjh7"; depends=[jsonlite plyr]; }; rmp = derive2 { name="rmp"; version="2.0"; sha256="1cs5ylh5z9mfj3r0yvxxd38ksna2dxk9nnfgqkry1kxibnd1b4ff"; depends=[]; }; - rms = derive2 { name="rms"; version="4.4-2"; sha256="18k7k5k4cy7l76wpdid1lkyjrfg7hs9v6vl6sz3r5y8iag0jklmg"; depends=[ggplot2 Hmisc lattice multcomp nlme polspline quantreg rpart SparseM survival]; }; + rms = derive2 { name="rms"; version="5.1-0"; sha256="1ibbpdclxc5vayl7hz176xc03snklx6ymiqzmpvi09y3bv92qnrx"; depends=[ggplot2 Hmisc htmlTable htmltools lattice multcomp nlme polspline quantreg rpart SparseM survival]; }; rms_gof = derive2 { name="rms.gof"; version="1.0"; sha256="1n0h3nrp11f2x70mfjxpk2f3g4vwjaf4476pjjwy49smxxlxwz82"; depends=[]; }; - rmumps = derive2 { name="rmumps"; version="5.0.1.8"; sha256="0awhrb29n8xib9hs6xhy5faz8rndrf29bxldxrwj8hnk2rr4bwvr"; depends=[Rcpp]; }; + rmsfact = derive2 { name="rmsfact"; version="0.0.3"; sha256="05s23rfs9prr2ia3h4h9y614xhv91lbgppgf3mrrssxkwz220kd5"; depends=[]; }; + rmumps = derive2 { name="rmumps"; version="5.0.1.11-1"; sha256="1apcn3pqv4fax784fjw2vkbqvkqh3xj3lp4sl59jsn6hbhm4zdnr"; depends=[Rcpp]; }; + rmutil = derive2 { name="rmutil"; version="1.1.0"; sha256="0f30afqbzrsgbnfpniwhbw4b8hlzc5zyaixvn9giggzwczfnf29k"; depends=[]; }; rnaseqWrapper = derive2 { name="rnaseqWrapper"; version="1.0-1"; sha256="1fa3hmwrpccf09dlpginl31lcxpj5ypxspa0mlraynlfl5jrivch"; depends=[ecodist gplots gtools]; }; - rnbn = derive2 { name="rnbn"; version="1.0.3"; sha256="05amrx12b7p4pca1wbysn1n2rxbg5r54mpmga4i3xlpijx9baj80"; depends=[httr]; }; - rncl = derive2 { name="rncl"; version="0.6.0"; sha256="067x05xg7bs271zjhylz3dcd9zan1ycmsh771gn06k9905rr2y71"; depends=[Rcpp]; }; - rneos = derive2 { name="rneos"; version="0.3-1"; sha256="00hyaq034d9rf03nwv0myryj3a6is08zn24d3i65kmv9aqicv569"; depends=[RCurl XML]; }; + rnaturalearthdata = derive2 { name="rnaturalearthdata"; version="0.1.0"; sha256="1z32j5lz2lb8xgpkr73majw22k0b49iazj6jjc7j4w9k4zxxa102"; depends=[sp]; }; + rnbn = derive2 { name="rnbn"; version="1.1.2"; sha256="1b4fx5pi0h8hlikxqk68jk1nimlsh3hp6qr1hb6y1jwq8xa4lyiw"; depends=[httr rgdal rgeos sp]; }; + rncl = derive2 { name="rncl"; version="0.8.2"; sha256="17inkk6ajdn1x6g253k2yjyivcryjwn903cd369h1bxlr80amqc0"; depends=[progress Rcpp]; }; + rneos = derive2 { name="rneos"; version="0.3-2"; sha256="0m5mmhwnrk9ifv91s5ngmlvqqd7bw1n7glzkgk5i72cw0siiwmh0"; depends=[RCurl XML]; }; rnetcarto = derive2 { name="rnetcarto"; version="0.2.4"; sha256="0fk5rym6zp049bl1f7bkl2231mjh3pgnxn0nhvmzpsah08rh4rr6"; depends=[]; }; rngSetSeed = derive2 { name="rngSetSeed"; version="0.3-2"; sha256="00mqjjkhbnvxqkf1kz16gipsf98q62vmhx9v8140qs7c4ljbhc3a"; depends=[]; }; rngWELL = derive2 { name="rngWELL"; version="0.10-4"; sha256="0ayrkd2yllsgl7iqqbhiyrnyyqk13f4wh1np23iz0zj650yjqdq8"; depends=[]; }; rngtools = derive2 { name="rngtools"; version="1.2.4"; sha256="1fcgfqrrb48z37xgy8sffx91p9irp39yqzxv7nqp1x2hnwsrh097"; depends=[digest pkgmaker stringr]; }; rngwell19937 = derive2 { name="rngwell19937"; version="0.6-0"; sha256="0m6icqf7nckdxxvmqvwfkrpjs10hc7l8xisc65q8iqpnpwl5p2f6"; depends=[]; }; - rnn = derive2 { name="rnn"; version="0.2.0"; sha256="1c8yx4604fdp9w1l3mcscig2206rwgbp43a1h753jpr8cqwdl75l"; depends=[]; }; - rnoaa = derive2 { name="rnoaa"; version="0.5.2"; sha256="08fr1d3nxiy3x1i1kb183nsl6ss5w75crykm54728dkij80jrrm2"; depends=[dplyr ggplot2 httr jsonlite lubridate scales tidyr XML]; }; - rnrfa = derive2 { name="rnrfa"; version="0.5.1"; sha256="0fr8yb5v0grcc55fc3i5sr80b0rm3vbicsy33g6pykgrzdrcppw4"; depends=[plyr RCurl rgdal rjson sp stringr XML2R zoo]; }; - robCompositions = derive2 { name="robCompositions"; version="2.0.0"; sha256="1y7jhvkj6wq4dkjfsl6f5la7kv3fshb02h8diyz4b4wv4yvkzis6"; depends=[cvTools data_table e1071 GGally ggplot2 MASS pls robustbase rrcov sROC VIM]; }; + rnn = derive2 { name="rnn"; version="0.8.0"; sha256="04924zn448x9rc3z9vh033l4rv9lz0hxv1bhfl0gn6gvd5wavlc7"; depends=[shiny sigmoid]; }; + rnoaa = derive2 { name="rnoaa"; version="0.6.6"; sha256="1b66jjvh6qk6xn0xfyd2prn4favhkfjmvi0qs76gdcxngy3kph2k"; depends=[dplyr ggplot2 gridExtra httr isdparser jsonlite lubridate rappdirs scales tibble tidyr XML xml2]; }; + rnpn = derive2 { name="rnpn"; version="0.1.0"; sha256="10xx8fxgdknv71ks42xxvf38xsmjy6s87y67wi21673v0n07fxb5"; depends=[data_table httr jsonlite plyr]; }; + rnrfa = derive2 { name="rnrfa"; version="1.3.0"; sha256="1zrj7y0qh57r7r9c5pspz238w0j1kaicd2l6vcg92lgxi8b9i558"; depends=[ggmap ggplot2 httr plyr rjson sp stringr xml2 xts]; }; + roahd = derive2 { name="roahd"; version="1.2"; sha256="1b38x7mrld4bnz04d2h3nlk7ksyja9pj9aa6d2k3p8i1k458aqqd"; depends=[robustbase scales]; }; + robCompositions = derive2 { name="robCompositions"; version="2.0.3"; sha256="0zm1qkrncp4k87mcbn72arr68xpif2y7f9m8smrcma4x52npfpfi"; depends=[car cluster cvTools data_table e1071 fpc GGally ggplot2 kernlab MASS mclust pls Rcpp robustbase rrcov sROC VIM]; }; robcor = derive2 { name="robcor"; version="0.1-6"; sha256="1hw8simv93jq8a5y79hblhqz157wr8q9dzgm0xhvvv5nkzyqkpzf"; depends=[]; }; robeth = derive2 { name="robeth"; version="2.7"; sha256="03pnwd3xjb9yv8jfav0s4l9k5pgpampp15ak7z0yvkjs20rvfq3d"; depends=[]; }; + robets = derive2 { name="robets"; version="1.1"; sha256="1wpgjw31il231am8bka6636rnlsk6kjly4v8755x191lywip6ck2"; depends=[forecast Rcpp]; }; robfilter = derive2 { name="robfilter"; version="4.1"; sha256="161rsqyy2gq1n6ysz0l4d4gqvxhs72hznc2d5hljxdaz3sbdzzig"; depends=[lattice MASS robustbase]; }; - robotstxt = derive2 { name="robotstxt"; version="0.1.2"; sha256="15a5k78mc5fpij3cvx8b0qyfglh2x357njm4ryxi230bwvszmqdw"; depends=[httr R6 stringr]; }; + robmed = derive2 { name="robmed"; version="0.1.1"; sha256="1716vzci0lmim4n28bc2pjky1shjxqrclgllj3hc4dzf8j22dxbz"; depends=[boot ggplot2]; }; + robotstxt = derive2 { name="robotstxt"; version="0.3.2"; sha256="01nff1m1hs30rzm6y92pi97cp33k2k8a1k11kqms54wkpkglyr55"; depends=[httr stringr]; }; robreg3S = derive2 { name="robreg3S"; version="0.3"; sha256="0rv8qh98wws1f40d1kmysyy9qin0ngsvwq63cnxbwi290wsnrvls"; depends=[GSE MASS robustbase]; }; - robumeta = derive2 { name="robumeta"; version="1.6"; sha256="13hwbl4pym3pkxxfbffhv22nn3f4spc6lb4gz1wxi9iha1s9ywi5"; depends=[]; }; + robumeta = derive2 { name="robumeta"; version="1.8"; sha256="0fqwif0rwrcfzzid8md2p9b04p7w2bk7asqjxnnag5ywf8f3aj6n"; depends=[]; }; robust = derive2 { name="robust"; version="0.4-16"; sha256="0psai9d6w7yi0wfm57cc7b2jd5i7wbk2xagrhnvhxknw0dwzf2jh"; depends=[fit_models lattice MASS robustbase rrcov]; }; robustDA = derive2 { name="robustDA"; version="1.1"; sha256="1yys6adkyms5r4sw887y78gnh97qqr7sbi5lxv5l9bnc4ggcfiz6"; depends=[MASS mclust Rsolnp]; }; + robustETM = derive2 { name="robustETM"; version="1.0"; sha256="1dlj79v08bls500lb81rya6vwx58h97rpq1sy9zwd3mfl9b6awp9"; depends=[]; }; robustHD = derive2 { name="robustHD"; version="0.5.1"; sha256="14v6l0appy206zx1jcv7m14r2z9g12dpkm6zxzv756rca2yj8fp5"; depends=[ggplot2 MASS perry Rcpp RcppArmadillo robustbase]; }; - robustX = derive2 { name="robustX"; version="1.1-4"; sha256="1s2aav2jr22dgrl7xzk09yn9909k76kpiz271w5r1id6hpfprjwc"; depends=[robustbase]; }; - robustbase = derive2 { name="robustbase"; version="0.92-5"; sha256="0wsdgqbkr0amid71q52cij9wnyss2sh1fm75g8cp4d6dndh327rl"; depends=[DEoptimR]; }; + robustX = derive2 { name="robustX"; version="1.2-2"; sha256="0pgfq78qd8s40ciqval01bwajy6zfdjms1lbh0b5g0rww6920s6f"; depends=[robustbase]; }; + robustbase = derive2 { name="robustbase"; version="0.92-7"; sha256="13xz4am7y0s0kl5bmbcw3dlhl7ji8h9sjx56wsgmj6r9n35nrggw"; depends=[DEoptimR]; }; robustfa = derive2 { name="robustfa"; version="1.0-5"; sha256="04nk5ipml54snsmiqf5sbhx490i46gnhs7yibf4wscrsj1bh2mqy"; depends=[rrcov]; }; robustgam = derive2 { name="robustgam"; version="0.1.7"; sha256="0s1z7jylj757g91najbyi1aiqnssd207jfm9yhias746540qp3kw"; depends=[mgcv Rcpp RcppArmadillo robustbase]; }; - robustlmm = derive2 { name="robustlmm"; version="1.8"; sha256="0i6h5kndj53p0hcwyx0bp2h6d2hiajf2ycyvq00ajx5jspi8kv48"; depends=[ggplot2 lattice lme4 Matrix nlme robustbase xtable]; }; - robustloggamma = derive2 { name="robustloggamma"; version="0.4-31"; sha256="19ycdvpzns46gjnkddwznnszs0941blpss7l0cqligv91cz7bkjc"; depends=[robustbase]; }; + robustlmm = derive2 { name="robustlmm"; version="2.1-2"; sha256="0vgrbvjaix44rixmgd8ljjzvx669gdk5il0f2p8y37ak4s4d2n09"; depends=[ggplot2 lattice lme4 Matrix nlme Rcpp RcppEigen robustbase xtable]; }; + robustloggamma = derive2 { name="robustloggamma"; version="1.0-2"; sha256="1cifyasrik010zs8jsz0kzzmwm3qmc0y7h2dahg2ibpwxfcqfcpq"; depends=[numDeriv RobustAFT robustbase survival]; }; + robustrank = derive2 { name="robustrank"; version="2016.11-9"; sha256="11x9smfkbq4f0p2n3gxhwzs2xsd019pilxrds601yshz754ccj98"; depends=[]; }; + robustrao = derive2 { name="robustrao"; version="1.0-1"; sha256="03bigs7sc7d6ah1dp3mrkklhwih80wbr841klilwkfkajp7q97h9"; depends=[doParallel foreach gmp igraph iterpc quadprog]; }; robustreg = derive2 { name="robustreg"; version="0.1-9"; sha256="1jjydpiz7wwyvivq7vbyrlyf6y9pd036p2xls0kkq7w1d3vpzjwk"; depends=[Matrix Rcpp RcppArmadillo]; }; + robustsae = derive2 { name="robustsae"; version="0.1.0"; sha256="0fi1fpqnfj6vkmidlr90kqbn1bxxxqb5qpqqrz9rrimlsvrc4ddl"; depends=[coda lattice MCMCpack mvtnorm pscl]; }; robustvarComp = derive2 { name="robustvarComp"; version="0.1-2"; sha256="187mcpih509hx15wjjr7z2h6h76mz2v0d8xgsxjd8wz7l3dnlp2f"; depends=[GSE numDeriv plyr robust robustbase]; }; + rocNIT = derive2 { name="rocNIT"; version="1.0"; sha256="18vxyh1wcq6dv62xf2dyl4226cd00n4hlbaqnynl9j5gnrmmsvi1"; depends=[]; }; rocc = derive2 { name="rocc"; version="1.2"; sha256="00yxbbphhwkg4sj2h7pd9vw86yavl711nk8yylwmjd3qv39qjml0"; depends=[ROCR]; }; + roccv = derive2 { name="roccv"; version="1.0"; sha256="13pycz05x0d1azc28yc7569awikd9lidzhhsgljqgsxvazr8fg0i"; depends=[glmnet pROC]; }; rockchalk = derive2 { name="rockchalk"; version="1.8.101"; sha256="1aa0m3whvb190cyfl4177pfd2l1i1a0dz9rn2fxkvls393cssfmb"; depends=[car lme4 MASS]; }; - rococo = derive2 { name="rococo"; version="1.1.2"; sha256="08204y3g3xd2srpcpnbkq1laqfr3wrhy73whlxf83gffw8j0iyv8"; depends=[Rcpp]; }; + rococo = derive2 { name="rococo"; version="1.1.4"; sha256="08s21hhhzdaxbls2akd7sjyfl2nqpvpygpbj563584b399zfgxg2"; depends=[Rcpp]; }; rodd = derive2 { name="rodd"; version="0.2-1"; sha256="01zrkw4lr21vxk2grfc37iyrcipfdcj5m0i7gnxsvs435y9fqagd"; depends=[Matrix matrixcalc numDeriv quadprog rootSolve]; }; - rollply = derive2 { name="rollply"; version="0.4.2"; sha256="122c41rqc88ikxws251ddppah18ficir7p00x7wiynqplmhps3nl"; depends=[plyr Rcpp scales stringr]; }; - rootSolve = derive2 { name="rootSolve"; version="1.6.6"; sha256="0mn7nxdw1klfay7z12vl3k0ffq3i9p930fyiksjjgy4yz6hljxqx"; depends=[]; }; + rodeo = derive2 { name="rodeo"; version="0.7.1"; sha256="0q76dnwc5bixbl2wh6km7085rivfzjpzl6c3w48wq5b23k1v7pfr"; depends=[deSolve R6]; }; + rodham = derive2 { name="rodham"; version="0.0.3"; sha256="1rc3k2qsa1rb11fk0va635czslqk1nxpcykrqc5p225makisaxv1"; depends=[jsonlite plyr splitstackshape]; }; + roll = derive2 { name="roll"; version="1.0.6"; sha256="0123ihl9b4x65azbr4hvm69q53sh753mgf0j54wq98y0f8kx757v"; depends=[Rcpp RcppArmadillo RcppParallel]; }; + rollbar = derive2 { name="rollbar"; version="0.1.0"; sha256="1q2ym0vkgbdnibxmwx0bp9c20g3bm8fzwwgs3j4bxg1ydg3gnkj4"; depends=[httr]; }; + rollply = derive2 { name="rollply"; version="0.5.0"; sha256="01rh4x9352ixdhrqdysapqx5ynksknyf8n230b340pxwaz2d7xhc"; depends=[plyr Rcpp stringr]; }; + rootSolve = derive2 { name="rootSolve"; version="1.7"; sha256="08ic6ggcc5dw4nv9xsqkm3vnvswmxyhnqnv1rdjv1h2gy1ivpcq8"; depends=[]; }; + rootWishart = derive2 { name="rootWishart"; version="0.3.0"; sha256="0jifnk6ysq0603pjjyn73gcib0yrlf8apk1isl8wm5xbqc91m859"; depends=[BH Rcpp RcppEigen]; }; + rope = derive2 { name="rope"; version="1.0"; sha256="06qp6h8cjnz0yacm4r39k99hrw74iyq16h5mqfcki7sf3zqbfm7r"; depends=[]; }; + ropenaq = derive2 { name="ropenaq"; version="0.1.3"; sha256="1r3hp6y8wp397x8al5xx4ly4ydv40ln0s28db0cnnsi2arn4q4mb"; depends=[dplyr httr jsonlite lazyeval lubridate tidyr]; }; ropensecretsapi = derive2 { name="ropensecretsapi"; version="1.0.1"; sha256="0d4yl0h4am3blskdnzk119hk374c3vx0cg99r20w07yh8jfafrw7"; depends=[RCurl RJSONIO]; }; - ror = derive2 { name="ror"; version="1.2"; sha256="0n8mk35rm3rp0c7a3i961kij21a177znh9hkq4snqqlw9vf50hdg"; depends=[igraph rJava ROI ROI_plugin_glpk]; }; - rorcid = derive2 { name="rorcid"; version="0.2.2"; sha256="0jnvc04br702027y3dhhjckd94lidvsj937cv5lvpb7fd8ahmx7z"; depends=[httr jsonlite]; }; - rorutadis = derive2 { name="rorutadis"; version="0.3.1"; sha256="06s2cnfhs4hffd2bzqp6542fqw37ha63d5sc25j9ch3ih42ja3cg"; depends=[ggplot2 gridExtra hitandrun Rglpk]; }; - rosm = derive2 { name="rosm"; version="0.1.3"; sha256="0a9shin62zlpc752jhyg72cshc7wwz6cp4br64ra4h86xdlwi3c4"; depends=[abind digest jpeg png rgdal rjson sp]; }; + rorcid = derive2 { name="rorcid"; version="0.3.0"; sha256="1c4di3cgx9b86v5fnsahf7gd1shb6klrg4mfyhf4irndn7b1r562"; depends=[httr jsonlite tibble]; }; + rorutadis = derive2 { name="rorutadis"; version="0.4.2"; sha256="13a7xj4qw1nd8xgrqhrki3php960lgy9gy38sg4kpvs4j2rwijzc"; depends=[ggplot2 gridExtra hitandrun Rglpk]; }; + rosetteApi = derive2 { name="rosetteApi"; version="1.5.0"; sha256="1mwvqgfc6l1bqa8ik9nx6mk380hnrplbls8hc5yign8wqlw8rql5"; depends=[httr jsonlite]; }; + rosm = derive2 { name="rosm"; version="0.1.4"; sha256="1p15pmhv52fg8lc0c0yiadc7s0q9s0dz9q6d8544msaxsjwfkpxp"; depends=[abind digest foreach jpeg png rgdal rjson sp]; }; + rospca = derive2 { name="rospca"; version="1.0.0"; sha256="09rlkzajgs7sqdj5lwb0bs0vx6676qwqcwx1wawvg40npfw40l0h"; depends=[elasticnet mrfDepth mvtnorm pcaPP pracma robustbase rrcov rrcovHD]; }; rotationForest = derive2 { name="rotationForest"; version="0.1"; sha256="07my0i84jvmjxvg2ifvsrbc0r5z4s32xi0vfdwrkhhdzdn87h527"; depends=[rpart]; }; rotations = derive2 { name="rotations"; version="1.5"; sha256="1zksh6hyxdkm0lvvrld6dgkmhszn6wsjrjzr2xbn3af3gsvsydaa"; depends=[ggplot2 Rcpp RcppArmadillo rgl sphereplot]; }; - rotl = derive2 { name="rotl"; version="0.5.0"; sha256="0na3x13d2n5fahyxj5jp4v3j3clrcr6m9g4cig9d5dk6dhp3iv9d"; depends=[ape assertthat httr jsonlite rncl]; }; + rotl = derive2 { name="rotl"; version="3.0.1"; sha256="18dzg3ysy6aphwbj1c4hzr1qn8q3vvr5r0qnpmidr5rwyhc78phb"; depends=[ape assertthat httr jsonlite rentrez rncl]; }; roughrf = derive2 { name="roughrf"; version="1.0"; sha256="0nwdynqfb9yzjvi1lykgdkch3b4g09aj8vbd6sf5pyx473s066y4"; depends=[mice nnet randomForest]; }; - rowr = derive2 { name="rowr"; version="1.1.2"; sha256="1hvj17n3fy1jaaz551s1icjv1kgr2s22xvg4fllzs8hpgdsybp1j"; depends=[]; }; - roxygen2 = derive2 { name="roxygen2"; version="5.0.1"; sha256="19gblyrrn29msbpawcb1hn5m1rshiqwxy0lby0vf92rm13fmsxcz"; depends=[brew digest Rcpp stringi stringr]; }; + rowr = derive2 { name="rowr"; version="1.1.3"; sha256="1f93c2yni956flwnxgphn340pc7p6yagr5xnmhinjgk9kvsd07yh"; depends=[]; }; + roxygen2 = derive2 { name="roxygen2"; version="6.0.1"; sha256="0xpzziminf225kjwhyl51kgkzhplyzhk5farhf5s822krl2xqbfj"; depends=[brew commonmark desc digest R6 Rcpp stringi stringr xml2]; }; royston = derive2 { name="royston"; version="1.2"; sha256="1rywc89qzx0hldbq10201bjdhz60pq2gmgd9b9j52mza3w4canjz"; depends=[moments nortest]; }; rpanel = derive2 { name="rpanel"; version="1.1-3"; sha256="1wm0dcbyvxz4ily8skz2yda44n74x2nmc4pg11ja0yvk038gjfns"; depends=[]; }; rpart = derive2 { name="rpart"; version="4.1-10"; sha256="119dvh2cpab4vq9blvbkil5hgq6w018amiwlda3ii0fki39axpf5"; depends=[]; }; - rpart_plot = derive2 { name="rpart.plot"; version="1.5.3"; sha256="18kif26aviyd217dlq5sajfa13acn8nqccrwnl1wy731hsnfv4gf"; depends=[rpart]; }; + rpart_plot = derive2 { name="rpart.plot"; version="2.1.1"; sha256="0bxn67an7xkg2cml32kll3gwzbs87hzia1jkx0dwg7vmkkvm1ab3"; depends=[rpart]; }; rpart_utils = derive2 { name="rpart.utils"; version="0.5"; sha256="00ahvmly6cdf7qhhcic0dbjlljqq8kbhx15rc7vrkd3hzd55c0im"; depends=[rpart]; }; rpartScore = derive2 { name="rpartScore"; version="1.0-1"; sha256="15zamlzbf6avir8zfw88531zg5c0a6sc5r9v5cy9h08ypf34xf4y"; depends=[rpart]; }; rpartitions = derive2 { name="rpartitions"; version="0.1"; sha256="1gklsi4pqhk16xp9s49n1lr9ldm1vx61pvphjqsqkzrlxwcpx3j8"; depends=[hash]; }; rpca = derive2 { name="rpca"; version="0.2.3"; sha256="135q3g8jmn9rwamrc9ss45cnbfyw8kxcbrf0kinw8asz70fihj9z"; depends=[]; }; rpcdsearch = derive2 { name="rpcdsearch"; version="1.0"; sha256="17g3x15qgv2hamlj451sb88i83n8svw5vnmjpijp5cnn5d1jx0d6"; depends=[assertthat combinat dplyr stringr xlsx]; }; - rpdo = derive2 { name="rpdo"; version="0.1.1"; sha256="0kq53mlr6i65s8lqj5nk8nvadqxd8hw4rx1vg8c6p5kvnl6pmawn"; depends=[]; }; - rpf = derive2 { name="rpf"; version="0.51"; sha256="0hsghv26jbv3alvyrh9bkgx97mjbvd21zjv9n1q63d6d3drxc6rc"; depends=[mvtnorm RcppEigen]; }; - rpg = derive2 { name="rpg"; version="1.4"; sha256="0sisn5l1qxlqg6jq4lzr7w3axkaw5jlpz8vl9gp2hs0spxsjhcyn"; depends=[RApiSerialize Rcpp uuid]; }; - rphast = derive2 { name="rphast"; version="1.6"; sha256="0ni8969bj3pv0wl8l0v352pqw2d5mlshsdw1rb6wlxk7qzfi5cl2"; depends=[]; }; - rpivotTable = derive2 { name="rpivotTable"; version="0.1.5.7"; sha256="1qqx417bgf5dcbvssp7y8b5zz66ipwdpv18pgndj92rx53h81g18"; depends=[htmlwidgets]; }; - rplexos = derive2 { name="rplexos"; version="1.1.4"; sha256="1q9vlxhglmrwxh9g4wq98nc321kq7jhgkykp9hwl3bd26a1jcfjp"; depends=[data_table DBI doParallel dplyr foreach lubridate Rcpp RSQLite stringi tidyr]; }; - rplos = derive2 { name="rplos"; version="0.5.6"; sha256="0h8k2di868h49hxwww8nz093viqfd48q3jhmlk33yfgs44sm20hj"; depends=[dplyr ggplot2 httr jsonlite lubridate plyr reshape2 solr whisker]; }; - rplotengine = derive2 { name="rplotengine"; version="1.0-5"; sha256="1wwpfnr5vi8z26alm8y5gply0y4iniagimldzy2z696djzz8p8p8"; depends=[xtable]; }; - rpnf = derive2 { name="rpnf"; version="1.0.4"; sha256="0cpn23qngjx6m33f3kwflabxdhs06r2mnlh9a6adw4fvvizxnki4"; depends=[]; }; - rportfolios = derive2 { name="rportfolios"; version="1.0"; sha256="1zcv5ddmk15l0p03nlffimlhhpcc7l1c05xl2d1xlfk58rkvqns6"; depends=[]; }; + rpdo = derive2 { name="rpdo"; version="0.2.1"; sha256="0n2lpnphnb5h7y9jszq4m15wymwgv7v2pw5fwbflr0ihvx3i3iac"; depends=[curl datacheckr dplyr lubridate magrittr readr stringr tidyr]; }; + rpf = derive2 { name="rpf"; version="0.53"; sha256="16d28i8s7f6ag1jvxw1ns8pi3s1rbxp9z9l13bxsm6cd6kq5jgrq"; depends=[mvtnorm RcppEigen]; }; + rpg = derive2 { name="rpg"; version="1.5"; sha256="0hjfzikaryr55xjfw7zjdby4ja59rxq9ikycgbpapvpy2q9py5yp"; depends=[getPass RApiSerialize Rcpp uuid]; }; + rphast = derive2 { name="rphast"; version="1.6.5"; sha256="1jff94hx7skvd6icbrcyabsvz80sgqqv28vz91mcz5jh6v6afhl3"; depends=[]; }; + rpinterest = derive2 { name="rpinterest"; version="0.3.1"; sha256="0kkf73byhgzqxw85wda3nh7qsq81pc035vi6z3fhnvb9ssszwakc"; depends=[httr magrittr rjson]; }; + rpivotTable = derive2 { name="rpivotTable"; version="0.1.5.20"; sha256="1aqk0afw2vjb7d75n9imp0dc3nq1w94n3r9fd3k1zsmia8ds8dh3"; depends=[htmlwidgets]; }; + rplexos = derive2 { name="rplexos"; version="1.1.11"; sha256="0i0yiiy84d6qgx70ib0rf0hr0jb6naw6d6w8lvsl104c3m23sf4q"; depends=[data_table DBI doParallel dplyr foreach lubridate Rcpp RSQLite stringi tidyr]; }; + rplos = derive2 { name="rplos"; version="0.6.4"; sha256="0jqvm212clh02g9sk239l467xg0b83c1zbnhfwgzmvbvk630na1b"; depends=[dplyr ggplot2 httr jsonlite lubridate plyr reshape2 solr whisker]; }; + rplotengine = derive2 { name="rplotengine"; version="1.0-6"; sha256="1x9lf5h6cmjyi5xyvmk2ii2dwkwmjqbg0m1fhfabay0flqc7qdm0"; depends=[xtable]; }; + rpms = derive2 { name="rpms"; version="0.2.0"; sha256="15l7n9qddzk71s0si0mxmpzvl2h0sdb2z2x058cif4i4kgly9h7d"; depends=[Rcpp RcppArmadillo]; }; + rpn = derive2 { name="rpn"; version="1.0"; sha256="0wk8y4yk6wqzbq5bqv6zncfp9az5vn8xgwh426pk3bxm3v4xi16i"; depends=[BBmisc checkmate]; }; + rpnf = derive2 { name="rpnf"; version="1.0.5"; sha256="07byg0ym4d2cr6fp74z379jhsaw4c0xrwf622dvhwa4frn4anl60"; depends=[]; }; + rportfolios = derive2 { name="rportfolios"; version="1.0-1"; sha256="00xxh85jpl0rw8fv84i7zmq0psc92pq7hharnr4szbmhgz8kbc35"; depends=[truncdist]; }; + rpostgis = derive2 { name="rpostgis"; version="1.1.1"; sha256="0bir893izyx8791m39fm9ykwdp9a6n3mgphx80i7gs0wsw5z7bv3"; depends=[DBI raster rgeos RPostgreSQL sp]; }; + rpostgisLT = derive2 { name="rpostgisLT"; version="0.4.0"; sha256="108payblzqiqy4i4w5hwv2v45rmhw1lylkc8mdkfyg64cx7kl7pp"; depends=[adehabitatLT DBI rpostgis RPostgreSQL sp testthat]; }; + rpql = derive2 { name="rpql"; version="0.5"; sha256="1d5mr04jk08l617zkqn13njglwj0w9an1rix937bcxw69blshahi"; depends=[gamlss_dist lme4 MASS Matrix mvtnorm]; }; + rprev = derive2 { name="rprev"; version="0.2.3"; sha256="14p79f0mkvgwk8bwjnr7gvkvs8c632z7hddcyyrwldpilwyjnsgc"; depends=[doParallel dplyr foreach ggplot2 lazyeval magrittr rms survival tidyr]; }; rprime = derive2 { name="rprime"; version="0.1.0"; sha256="1v6n1qi0i7x8xgizbyvp1mnwc316lsan4rvam44fgjj45fcd79gd"; depends=[assertthat plyr stringi stringr]; }; rprintf = derive2 { name="rprintf"; version="0.2.1"; sha256="0rwqpln0igxb4m6d6jyp7h3shfb8sbp0kj7cgkffjp88hn9qm4h3"; depends=[stringi]; }; + rprojroot = derive2 { name="rprojroot"; version="1.2"; sha256="1fgyxv1zv04sllcclzz089xl6hpdzac7xk61l0l4acb7rqsx5d18"; depends=[backports]; }; + rpsftm = derive2 { name="rpsftm"; version="1.0.2"; sha256="0h539wdj255fynwhjvv7kzl8pfwfvqiji35bp3h55m5q09w77n98"; depends=[ggplot2 survival]; }; rpsychi = derive2 { name="rpsychi"; version="0.8"; sha256="1h40kbqvvwwjkz5hrclj6j22zhav3yyfbbhqahs1whwjkksnam4w"; depends=[gtools]; }; - rpubchem = derive2 { name="rpubchem"; version="1.5.0.2"; sha256="0lvi7m8jb2izsfia3c0qigsd1k1x9r02gymlwfg29pb8k10lwcjf"; depends=[car RCurl RJSONIO XML]; }; - rqPen = derive2 { name="rqPen"; version="1.3"; sha256="1hm4nh9afjwa601qysbjl6ipbal5rmmr8z5nn3f9bxd5nlgwzm0r"; depends=[quantreg regpro]; }; - rr = derive2 { name="rr"; version="1.3"; sha256="00m5h01j3qb83s7bcjp4xx6pf16hjjhl0qryb929cnxn1ln0ddns"; depends=[arm coda MASS]; }; + rptR = derive2 { name="rptR"; version="0.9.1"; sha256="0vwwdr0z1yyajisiy4ib1zksl0s1wjqf4pp9ymy8g5gnn1j2dx8i"; depends=[lme4 pbapply]; }; + rpubchem = derive2 { name="rpubchem"; version="1.5.10"; sha256="06j9ir65ykky5hdbyv74fnddwqd39jxvr6jig0kjqisc75k4spjz"; depends=[base64enc car data_table fingerprint iterators itertools RCurl RJSONIO stringr XML]; }; + rqPen = derive2 { name="rqPen"; version="1.5.1"; sha256="10lmbxz5wsfczxr1n8hclvschqm9mfzdgdac5r0b87a2xglqrizv"; depends=[quantreg regpro]; }; + rr = derive2 { name="rr"; version="1.4"; sha256="1c2h6ibjfwrjfqh1if3c90pdh0g2rf3p71j4p9w23xbbrx2l80pl"; depends=[arm coda magic MASS]; }; rrBLUP = derive2 { name="rrBLUP"; version="4.4"; sha256="0h0mqfb524kglaibgj4d0g05lrnzgz6x87irs31dwl28j4kxcz4w"; depends=[]; }; rrBlupMethod6 = derive2 { name="rrBlupMethod6"; version="1.3"; sha256="1qwv954mhry46ff2ax48xcmnasygi5alv8d413g3qbk2da6i0d8l"; depends=[]; }; - rrcov = derive2 { name="rrcov"; version="1.3-11"; sha256="0ixn2ly8p5wkdbd1fmpa0p22jxvmxiigpii4ia8vnhjnclm7jmin"; depends=[cluster lattice mvtnorm pcaPP robustbase]; }; - rrcovHD = derive2 { name="rrcovHD"; version="0.2-4"; sha256="020d9ip91azprr4hf5k2gyhlv6g6zkzmaa22fysq3hyacxymksib"; depends=[pcaPP pls robustbase rrcov spls]; }; - rrcovNA = derive2 { name="rrcovNA"; version="0.4-8"; sha256="1xhzy0gyiwhaklq1b9arxqpljfz08bwlhjw7xsjz7zjb650y3rw8"; depends=[cluster lattice norm robustbase rrcov]; }; + rrcov = derive2 { name="rrcov"; version="1.4-3"; sha256="0kagqggi634mvrhd67ia7mpjrj5v6w2wq0z3kyppg5xkvzh335nq"; depends=[cluster lattice mvtnorm pcaPP robustbase]; }; + rrcovHD = derive2 { name="rrcovHD"; version="0.2-5"; sha256="1wv50lcjf0fsxb1zagxbrcx68ilfmnmkc8ccpy9hw3qql5p368ij"; depends=[pcaPP pls robustbase robustHD rrcov spls]; }; + rrcovNA = derive2 { name="rrcovNA"; version="0.4-9"; sha256="1qc9xqm5x55dqjx1y7s4a2nwc07v32rygicbb8469knxasf92cs3"; depends=[cluster lattice norm robustbase rrcov]; }; + rrecsys = derive2 { name="rrecsys"; version="0.9.5.4"; sha256="0g3mz5k1ya72qc32wwh8hy809yzxigz8rkcp9rnxdr71fk604a04"; depends=[knitr MASS proxy registry]; }; rredis = derive2 { name="rredis"; version="1.7.0"; sha256="0wzamwpmx20did8xj8x9dllri2ps83viyqjic18ari7i4h1bpixv"; depends=[]; }; - rredlist = derive2 { name="rredlist"; version="0.1.0"; sha256="1ivxmb0jwwip7s4gglw4v4wsfzird7gvll8zcgpvwsi3mj5jqibp"; depends=[httr jsonlite]; }; - rrepast = derive2 { name="rrepast"; version="0.3"; sha256="133ip1fxj8z76v0ny02mw7wbqjsmqsxbha6zsi4db4cxnilq8hai"; depends=[digest lhs rJava xlsx]; }; - rriskDistributions = derive2 { name="rriskDistributions"; version="2.1"; sha256="1sc0bj5sivclbq0grif99vclnlhg1k9dz4xdvng6vv392xkwbmfd"; depends=[eha mc2d msm tkrplot]; }; + rredlist = derive2 { name="rredlist"; version="0.3.0"; sha256="1w59rqwgx3hr9icw8pzwc95117vrqkj3mq197kp0qy8xbkf83h8v"; depends=[crul jsonlite]; }; + rrefine = derive2 { name="rrefine"; version="1.0"; sha256="1lh3vddrp5k9bhz5spv93w0qm9z5lskpdgxfksys0l3275hzx1lm"; depends=[httr readr rlist]; }; + rrepast = derive2 { name="rrepast"; version="0.5.0"; sha256="1df6dgbfrh9ks4z22lm25m8v2baq78nq32f8v1cfkq1ygr6n2k99"; depends=[digest ggplot2 gridExtra lhs rJava sensitivity xlsx]; }; + rriskDistributions = derive2 { name="rriskDistributions"; version="2.1.1"; sha256="0zr3c84248myizrf3gmwkkybzlhk65j97dhg77cv2hbr7sdbjz2b"; depends=[eha mc2d msm tkrplot]; }; rrlda = derive2 { name="rrlda"; version="1.1"; sha256="06n9jah190cz25n93jlb5zb0xrx91bjvxgswwdx9hdf0fmwrpkvz"; depends=[glasso matrixcalc mvoutlier pcaPP]; }; + rrr = derive2 { name="rrr"; version="1.0.0"; sha256="0sv6k70mv325yjm8yjy4dw8cqc0xc071iiv94fk1l1yfz0n67prz"; depends=[dplyr GGally ggplot2 magrittr MASS plotly Rcpp]; }; rsae = derive2 { name="rsae"; version="0.1-5"; sha256="1f3ry3jwa6vg2vq2npx2pzzvfwadz8m48hjrqjk860nfjrymwgx5"; depends=[]; }; rsatscan = derive2 { name="rsatscan"; version="0.3.9200"; sha256="00vgby24jknq8nl7rnqcwg7gawcxhwq8b7m98vjx2hkqx39n4g21"; depends=[foreign]; }; - rscala = derive2 { name="rscala"; version="1.0.9"; sha256="024k3jivl2zvwnlamlsc34bqw7v0rj1psvypykq6lls60frr9cg8"; depends=[]; }; + rscala = derive2 { name="rscala"; version="1.0.15"; sha256="1gx3xqz505l5kw5hwgkjbsm0aj5p3ycghjmfqcihsxpvai7hzlza"; depends=[]; }; rscimark = derive2 { name="rscimark"; version="1.0"; sha256="1jsjz4d5bnxb90qqzz42m4nyvm8d8w8bs0m1r5g2n78zmckqb8vy"; depends=[checkmate]; }; - rsconnect = derive2 { name="rsconnect"; version="0.4.2"; sha256="04j2826264nvgwlbi68827cn3gah97bwmxn6yxrdpa4j1khmnj7g"; depends=[digest packrat PKI RCurl RJSONIO rstudioapi yaml]; }; - rscopus = derive2 { name="rscopus"; version="0.1.2"; sha256="178ymgywq7fmv8gicrkhcqw40f6wxiqq6zhlc1zilcr0rf6lvx6x"; depends=[httr]; }; + rsconnect = derive2 { name="rsconnect"; version="0.7"; sha256="104c83qq12kp1hzfs7k6nzlripsydwidqgdd3kakc4wy6dsr8bhn"; depends=[digest packrat PKI RCurl RJSONIO rstudioapi yaml]; }; + rscopus = derive2 { name="rscopus"; version="0.4.6"; sha256="0s8ahdp884yy2hpa5kq9d4kcnr0hx662wp7h0qi399pc0y1rydwm"; depends=[httr plyr]; }; + rscorecard = derive2 { name="rscorecard"; version="0.3.5"; sha256="1fhcp8xdhgjgpbfwc6bygq0z1z49w9c3bh12s8rml30597b8gc26"; depends=[dplyr jsonlite lazyeval magrittr]; }; rscproxy = derive2 { name="rscproxy"; version="2.0-5"; sha256="1bjdv7drlnffcnyc0j8r22j7v60k1xj58bw8nk9l8wvnmngrjz86"; depends=[]; }; rsdepth = derive2 { name="rsdepth"; version="0.1-5"; sha256="064jbb6gnx0sm41w3sbi6mvsbzsfkjqfici6frk8sfm9ybvm591j"; depends=[]; }; - rsdmx = derive2 { name="rsdmx"; version="0.5-3"; sha256="13wdzpyv15p4a92lclb6jg3lm1hnyaa8wqnngm1qyam3dhwfi9k0"; depends=[plyr RCurl XML]; }; + rsdmx = derive2 { name="rsdmx"; version="0.5-8"; sha256="0f0hc2v9g7gxqcfhx3m7fawsvlba3jx666f675263d8vhdc9f311"; depends=[plyr RCurl XML]; }; rseedcalc = derive2 { name="rseedcalc"; version="1.3"; sha256="18zmpjv6g8f7pmvqlp6khxyys9kdnq5x4zxwb6gwybsh4jxrymkp"; depends=[]; }; rsem = derive2 { name="rsem"; version="0.4.6"; sha256="16nsbp4s20396h2in0zymbpmsn24gqlbik0vgv86zhy1yg1rz9ia"; depends=[lavaan MASS]; }; rsgcc = derive2 { name="rsgcc"; version="1.0.6"; sha256="12f8xsg6abmhdgkrrc8sfzmv4i1pycq1g0jfad664d17yciw7rhh"; depends=[biwt cairoDevice fBasics gplots gWidgets gWidgetsRGtk2 minerva parmigene snowfall stringr]; }; rsggm = derive2 { name="rsggm"; version="0.3"; sha256="17yzvd5vs2avp0nzk7x9bi4d7p6n9nv7675qpgfpwkfqp25lax73"; depends=[glasso MASS Matrix QUIC]; }; rsig = derive2 { name="rsig"; version="1.0"; sha256="129k78i8kc30bzlphdb68vv3sw2k6xyiwrhw08vhzz6mf3jxlqsh"; depends=[BBmisc glmnet Matrix superpc survcomp survival]; }; - rsm = derive2 { name="rsm"; version="2.7-4"; sha256="0j520dhklfbd9mh90181lxjsvasgyc0zzi6z6ahybwhffwqczz42"; depends=[]; }; + rslp = derive2 { name="rslp"; version="0.1.0"; sha256="06glpdsd309058kxww114j9sshvj6gw9g5sdm4zkmzq3cl91fa6h"; depends=[magrittr plyr stringi stringr]; }; + rslurm = derive2 { name="rslurm"; version="0.3.1"; sha256="1mvs64g9j1ml8as18na39app1n8lk3m1qgki68nhkas81bmiq24a"; depends=[whisker]; }; + rsm = derive2 { name="rsm"; version="2.8"; sha256="1hnlaj5jwqxki07b1kzl716qkmqwap57cch2lwsb6gqqsjir8xfx"; depends=[estimability lsmeans]; }; rsml = derive2 { name="rsml"; version="1.3"; sha256="0a1y41jq0yzr19mb2scwhlp9gx5vngm4q12yxp1fcwk2cqhnsda6"; depends=[rgl XML]; }; - rsnps = derive2 { name="rsnps"; version="0.1.6"; sha256="1pqdmg1cwpm0cvr5ma7gzni88iq5kqv1w40v8iil3xvcmns8msjk"; depends=[httr jsonlite plyr RCurl stringr XML]; }; + rsnps = derive2 { name="rsnps"; version="0.2.0"; sha256="10g1b2i2mp0b4p78iiy83sz2jwz73xfjkhc6ih4ag2wmbdmwf9pb"; depends=[httr jsonlite plyr stringr XML]; }; rspa = derive2 { name="rspa"; version="0.1.8"; sha256="1zgk1v1yk9c51wbsl3skqfrznqj84146dzfwg7q3jy2hpdgf1cg6"; depends=[editrules]; }; + rsparkling = derive2 { name="rsparkling"; version="0.1.0"; sha256="15yz4z96hbl18l2n3vz7mcamwvh7zkqbhlhdmyi002bsc1jd97s9"; depends=[h2o sparklyr]; }; + rsq = derive2 { name="rsq"; version="0.6"; sha256="0qc5mkz7b68al3iahsbv45imkzabbsykd95w1yd7gfcrw0qk592m"; depends=[]; }; + rstack = derive2 { name="rstack"; version="1.0.0"; sha256="19vbfmkd6ymadah1y1w5rn52f4hviddccyc6qj2cv5viqwbwws2z"; depends=[R6]; }; rstackdeque = derive2 { name="rstackdeque"; version="1.1.1"; sha256="0i1qqbfj0yrqbkad8bqc1qlxmyxpn7zycbnq83cdmfbilcmi87ql"; depends=[]; }; - rstan = derive2 { name="rstan"; version="2.9.0-3"; sha256="0ps6a9fqvrm6p8s5g10373hfqrx58vmvg1w4rghz5v8wshjc9ij4"; depends=[BH ggplot2 gridExtra inline Rcpp RcppEigen StanHeaders]; }; - rstanarm = derive2 { name="rstanarm"; version="2.9.0-3"; sha256="0sh1xv0848c0sil1qrjdn8hgv2hr40nmz4knz63mnr3i5j8fzy00"; depends=[BH ggplot2 lme4 loo Matrix nlme Rcpp RcppEigen rstan shinystan StanHeaders]; }; - rstatscn = derive2 { name="rstatscn"; version="1.0.2"; sha256="0gq4ybymlpvzr5gkxlc877jwczh034b5gxmzhy8pcqhai6jsq42y"; depends=[httr jsonlite]; }; + rstan = derive2 { name="rstan"; version="2.14.1"; sha256="035gph171z3ydl321a46p9rl5dbzaw5vn4qa7mj20dmvg90py99k"; depends=[BH ggplot2 gridExtra inline Rcpp RcppEigen StanHeaders]; }; + rstanarm = derive2 { name="rstanarm"; version="2.14.1"; sha256="0hwiqn4swwg3b3g4szkrc1srqiibn227sb7rcqknh9fs6b8b78s5"; depends=[bayesplot BH ggplot2 lme4 loo Matrix nlme Rcpp RcppEigen rstan rstantools shinystan StanHeaders]; }; + rstantools = derive2 { name="rstantools"; version="1.1.0"; sha256="14kf5faz7n7r08dxsd4dw6as63lbb2fsyqiknn48fh2kp36ykpwj"; depends=[]; }; + rstatscn = derive2 { name="rstatscn"; version="1.1.1"; sha256="0aj4x3lyrldpgh90v90qbxylndacn5ri5yqff3qy53q45ar7yji3"; depends=[httr jsonlite]; }; rstiefel = derive2 { name="rstiefel"; version="0.10"; sha256="0b2sdgpb3hzal34gd9ldd7aihlhl3wndg4i4b3wy6rrrjkficrl1"; depends=[]; }; - rstpm2 = derive2 { name="rstpm2"; version="1.3.1"; sha256="0fflgp17gfav7q7yv3x1g74s9r5fhzr52mrmjl9p6hc7q6m2frzl"; depends=[bbmle fastGHQuad mgcv numDeriv Rcpp RcppArmadillo survival]; }; + rstpm2 = derive2 { name="rstpm2"; version="1.3.4"; sha256="0vm5w597lz3zzklm21avxm88lqgrn9k2hlfh4yvmqk4vmwp4qkcc"; depends=[bbmle fastGHQuad mgcv numDeriv Rcpp RcppArmadillo survival]; }; rstream = derive2 { name="rstream"; version="1.3.4"; sha256="1sgwk9mh3v3vv8gm537hfng6p2sqafd9ykraiw00s0z60fa80jnx"; depends=[]; }; - rstudioapi = derive2 { name="rstudioapi"; version="0.5"; sha256="0sgnqfx0m3hzh57k10s7ndrbw7yqjjjcgfikafya98jcc7wmpwym"; depends=[]; }; + rstudioapi = derive2 { name="rstudioapi"; version="0.6"; sha256="1zkvz72z6nw0xc8bhb21y5x1nk6avijs0w8n4vsbvw9sn76wc96s"; depends=[]; }; rsubgroup = derive2 { name="rsubgroup"; version="0.6"; sha256="1hz8rnbsl97ch6sjwxdicn2sjyn6cajg2zwmfp03idzpb3ixlk7l"; depends=[foreign rJava]; }; rsunlight = derive2 { name="rsunlight"; version="0.4.2"; sha256="1m4ya960zjqxbjcjj42gjmdy40ac7m471fkfsd0r6w675qbiiw87"; depends=[httr jsonlite plyr stringr]; }; - rsvd = derive2 { name="rsvd"; version="0.3"; sha256="0439s19fn01iihsapzzbmq72v4brsmqypxgdhxswhj9qq3y8ikhc"; depends=[]; }; - rsvg = derive2 { name="rsvg"; version="0.5"; sha256="0db0s3flyl1w1wzr9pbnpakz1zi1ssh4mgjpspkjphpqahix27qa"; depends=[]; }; + rsvd = derive2 { name="rsvd"; version="0.6"; sha256="0vrsgxbbk5n51i1s80bixcxph2ws86zpbdqs81yfvnzghrc99nas"; depends=[]; }; + rsvg = derive2 { name="rsvg"; version="1.0"; sha256="1584g43jx21d2di6zn4ra5j916a5bqzpni223prwn3nii5244f3x"; depends=[]; }; + rt3 = derive2 { name="rt3"; version="0.1.2"; sha256="1fqbymkz4csavkxrs26glzrh0kw3qy9x5smgddgda9a1dxh9ljkm"; depends=[]; }; rtable = derive2 { name="rtable"; version="0.1.5"; sha256="1a9x0qcbp96wg86nbvx25yh5viwvf5sqb41z3cvr5i7br2ji8n5i"; depends=[knitr ReporteRs shiny tidyr xtable]; }; rtape = derive2 { name="rtape"; version="2.2"; sha256="0q7rs7pc1k1kayr734lvh367j5qig2nnq5mgak1wbpimhl7z3wm7"; depends=[]; }; - rtdists = derive2 { name="rtdists"; version="0.2-6"; sha256="1f2yv4qq27i1fc0ys3kk31lsnbdzrmrk44widnxd19hxn4r05cs6"; depends=[evd gsl msm]; }; + rtdists = derive2 { name="rtdists"; version="0.6-6"; sha256="173yzgvzcfdhkk4zf1d8cxnk707dbr6n5fpwzhcn4qx35sgq26jd"; depends=[evd gsl msm pracma]; }; rtematres = derive2 { name="rtematres"; version="0.2"; sha256="1d0vrprvnlk4hl2dbc6px9xn9kx9d1qvlqxd798hzda6qg5wwvf2"; depends=[gdata plyr RCurl XML]; }; + rtext = derive2 { name="rtext"; version="0.1.20"; sha256="0455rwfxmpgb4qb925ildqr4km4ndgqjxgvk90x2dhfivgmmn60k"; depends=[digest hellno magrittr R6 Rcpp RSQLite stringb]; }; rtf = derive2 { name="rtf"; version="0.4-11"; sha256="04z0s5l9qjlbqahmqdaqv7mkqavsz4yz25swahh99xfwp9plknfl"; depends=[R_methodsS3 R_oo]; }; - rtfbs = derive2 { name="rtfbs"; version="0.3.4"; sha256="1z5rhxgi44xdv07g3l18ricxdmp1p59jl8fxawrh5jr83qpcxsks"; depends=[rphast]; }; - rticles = derive2 { name="rticles"; version="0.1"; sha256="17fbwarchnxvbk2fsb2hyifdhnaj05pl5ia32j5yd7pyi848mpvv"; depends=[knitr rmarkdown yaml]; }; + rtfbs = derive2 { name="rtfbs"; version="0.3.5"; sha256="0sdxlw1pkwwlzz2zcw4v8zhlm97lw2j5hbkqssialpa53jwyibyc"; depends=[rphast]; }; + rticles = derive2 { name="rticles"; version="0.2"; sha256="09cc0xfsvraw2vxl3icql8060nw4136cbp2iicm0bhhrvyxpvl5r"; depends=[knitr rmarkdown yaml]; }; + rtide = derive2 { name="rtide"; version="0.0.3"; sha256="0zbm4mza5093ixwaiza16lr1wd92fpgrl9ixxsmp0whnl4g2mwl2"; depends=[abind datacheckr dplyr lubridate magrittr plyr stringr tibble tidyr]; }; rtiff = derive2 { name="rtiff"; version="1.4.5"; sha256="0wpjp8qwfiv1yyirf2zj0696zb7m7fpzn953ii8vbmgzhakgr8kw"; depends=[pixmap]; }; rtimes = derive2 { name="rtimes"; version="0.3.0"; sha256="141i8zjsdzk7jdjf9wf3pa6d9ixjg1m4chk44iznmjpig4gbq2n9"; depends=[dplyr httr jsonlite]; }; - rtkore = derive2 { name="rtkore"; version="1.0.1"; sha256="0wk3v7xzmkmmag09dc08812g75a129ycn1107hvzqcpqlwma3n2n"; depends=[Rcpp]; }; - rtkpp = derive2 { name="rtkpp"; version="0.9.2"; sha256="09x98mgbz3a9vn59qarzsfml5qaw9mz2hg36sn8z1pgpjq7a75sp"; depends=[Rcpp]; }; - rtop = derive2 { name="rtop"; version="0.5-5"; sha256="05yygg85f981x2amf9y8nr4ymya3pkwlig8i1rf9b49jx11h5w8j"; depends=[gstat sp]; }; - rts = derive2 { name="rts"; version="1.0-10"; sha256="0fvs82n8lxbm4n8w22ahx7j38xhaafwvr3sqr3lrfni2cs346pzs"; depends=[raster sp xts zoo]; }; - rtson = derive2 { name="rtson"; version="1.1"; sha256="158dzs9wzb12k3hpkpz7jjhjdbr23j05rfyav1zn18hg43i5wbv3"; depends=[R6]; }; + rtip = derive2 { name="rtip"; version="1.0.0"; sha256="1xkw0m4fnwbsqqyhvxhsia3hlpjb2qhs6y0c4g7f7qa7f0ibcbja"; depends=[boot ggplot2 mvtnorm plyr]; }; + rtk = derive2 { name="rtk"; version="0.2.4.1"; sha256="1k1h5v0610bnxpz3fciim0ixjlrjzqlhx9h8b8zsz306l84bnxy8"; depends=[Rcpp]; }; + rtkore = derive2 { name="rtkore"; version="1.2.0"; sha256="1kchqxjyqz5vz3kfljvjhx42yahc58m99ifv8yijlffi68k486vl"; depends=[Rcpp]; }; + rtop = derive2 { name="rtop"; version="0.5-10"; sha256="0h35f3wpvsdvvymb2sl8g2wljzqzgis66bkf42njhxry7wavqf17"; depends=[gstat rgdal sp]; }; + rtrends = derive2 { name="rtrends"; version="0.1.0"; sha256="04xdggf36m294drb9z8khdjr6fgsg4bwkb4mmbbvqfzjpq4mq4y1"; depends=[dplyr lubridate tidyr]; }; + rtrie = derive2 { name="rtrie"; version="0.1.1"; sha256="092ir1bm193x8ah2zbyik6vfavdqwzkda5kx4m7mv1gxcy4s64vr"; depends=[]; }; + rtrim = derive2 { name="rtrim"; version="1.0.1"; sha256="134j5sv9dvcq1n37rry7615nr3pa54by6r7ss7fagcmy4lnma2ps"; depends=[]; }; + rts = derive2 { name="rts"; version="1.0-18"; sha256="1dryx7pb86b6d0z271girvl3k9ahxv0llxcmaypk9x077gzyxx94"; depends=[raster sp xts zoo]; }; + rtson = derive2 { name="rtson"; version="1.3"; sha256="1gwvk7nmq9bz90jy1zh7lhr735iw804pmwxykdpaigcsnxk7zx03"; depends=[R6]; }; + rtweet = derive2 { name="rtweet"; version="0.4.0"; sha256="19sb8l7xllicagy8i1rwxkfbbl9klv3m9kkxvlc3slg1j3aprvpz"; depends=[httr jsonlite magrittr openssl]; }; rtype = derive2 { name="rtype"; version="0.1-1"; sha256="0wjf359w7gb1nrhbxknzg7qdys0hdn6alv07rd9wm6zynnn1vwxy"; depends=[]; }; + rtypeform = derive2 { name="rtypeform"; version="0.2.0"; sha256="08hrhdd7zabga7338pvkkcy47kkvc2nbqb2v0sp3r4jqg7438a07"; depends=[httr jsonlite]; }; rucm = derive2 { name="rucm"; version="0.6"; sha256="1n6axmxss08f2jf5impvyamyhpbha13lvrk7pplxl0mrrrl5g0n8"; depends=[KFAS]; }; + rucrdtw = derive2 { name="rucrdtw"; version="0.1.1"; sha256="1531i3n3a0hj6smi6lbhqx9zk4rf3zyi6nhaihcgp3sb9vk7zdlf"; depends=[Rcpp]; }; rugarch = derive2 { name="rugarch"; version="1.3-6"; sha256="0ysycv0qldp4dnj8yh22v860d40ycp2c0la87zblgl86r7g4f03b"; depends=[chron expm ks nloptr numDeriv Rcpp RcppArmadillo Rsolnp SkewHyperbolic spd xts zoo]; }; runittotestthat = derive2 { name="runittotestthat"; version="0.0-2"; sha256="15zdcvqkr5ivq6wk6dw8k6diginc6z7mdc18pswim90d99j2g9sm"; depends=[assertive RUnit]; }; - runjags = derive2 { name="runjags"; version="2.0.2-8"; sha256="00jqaz68mr3jmi7ifklwyjsh7jaxbk6pc1fxprgz29nbc1r7hi0r"; depends=[coda lattice]; }; - rusda = derive2 { name="rusda"; version="1.0.6"; sha256="1ziinga40jxnh7c8yd6vmryl7kpk62fr87p3ilv41rvfgw3rsl3v"; depends=[foreach httr plyr stringr testthat XML]; }; + runjags = derive2 { name="runjags"; version="2.0.4-2"; sha256="035sxmh0b0m6dwz8qbpsmw2p7ihkx3cxgkhj27i0j6dsjryl3x4p"; depends=[coda lattice]; }; + rusda = derive2 { name="rusda"; version="1.0.8"; sha256="0xx72jjf1pyixwpnvvgx5n2vc5gl46bam1caav043iqki68wb338"; depends=[foreach httr plyr RCurl stringr taxize testthat XML]; }; + rust = derive2 { name="rust"; version="1.1.0"; sha256="0ii7a4cygzx5ww064papwxcby0j9maw4rjf40z1jgr6xr5x0dfny"; depends=[spatstat]; }; ruv = derive2 { name="ruv"; version="0.9.6"; sha256="12zi775nx6k1j9sz691x6r9r0arfnhwddf5nxbr1xk25dj9qa210"; depends=[]; }; rv = derive2 { name="rv"; version="2.3.1"; sha256="0bjqwk7djl625fws3jlzr1naanwmrfb37hzkyy5szai52nqr2xij"; depends=[]; }; rvHPDT = derive2 { name="rvHPDT"; version="3.0"; sha256="05nrfnyvb8ar7k2bmn227rn20w1yzkp1smwi4sysc00hyjrlyg8s"; depends=[gtools]; }; rvTDT = derive2 { name="rvTDT"; version="1.0"; sha256="09c2fbqnlwkhaxfmgpsdprl0bb447ajk9xl7qdlda201fvxkdc8v"; depends=[CompQuadForm]; }; rvalues = derive2 { name="rvalues"; version="0.6"; sha256="075lfbqjzi103wh87i78x914iyrvrmmdz8z9f6391rbpip6bjpr3"; depends=[]; }; - rversions = derive2 { name="rversions"; version="1.0.2"; sha256="0xmi461g1rf5ngb7r1sri798jn6icld1xq25wj9jii2ca8j8xv68"; depends=[curl xml2]; }; - rvertnet = derive2 { name="rvertnet"; version="0.4.1"; sha256="1x24l83m00rd10hcy2mnzpwlkpk92zfw3gcxiwghpijy04azkiy9"; depends=[dplyr ggplot2 httr jsonlite maps plyr]; }; - rvest = derive2 { name="rvest"; version="0.3.1"; sha256="12mh9jbfy6ykx89kb475gk99i0jaxja6jk7pd6d9iz0kbfywnm7f"; depends=[httr magrittr selectr xml2]; }; - rvg = derive2 { name="rvg"; version="0.0.8"; sha256="0dbqzaxhabq0qn6clj46mb6a9cawz3pkmnksrhqbslq7x2y5wcp8"; depends=[gdtools R_utils Rcpp xml2]; }; + rvcheck = derive2 { name="rvcheck"; version="0.0.5"; sha256="045anzzp3laavxm3sqnyfnnc13nhryv15w63qawr9y81alg91397"; depends=[devtools]; }; + rversions = derive2 { name="rversions"; version="1.0.3"; sha256="0i2gi05nrvknr7g89rbppkswyfcwwd4r9gp75fdfhpah8sgq1l11"; depends=[curl xml2]; }; + rvertnet = derive2 { name="rvertnet"; version="0.5.0"; sha256="0bvf76i11kkjdy0vvx2fbv478nbzybljsw40l9mg3i9dcdmz3gjc"; depends=[dplyr ggplot2 httr jsonlite maps]; }; + rvest = derive2 { name="rvest"; version="0.3.2"; sha256="04mv99z8dixywx96kfy4215g6ib23s7qvd77hcf9pxqxzcvqhvhd"; depends=[httr magrittr selectr xml2]; }; + rvg = derive2 { name="rvg"; version="0.1.2"; sha256="173fklnnizbh475qk9k7ff9zk96j1ljnbyhj8p494ys3jk4na0hw"; depends=[gdtools R_utils Rcpp xml2]; }; rvgtest = derive2 { name="rvgtest"; version="0.7.4"; sha256="1lhha5nh8fk42pckg4ziha8sa6g20m0l4p078pjj51kz0k8929ng"; depends=[]; }; + rvsel = derive2 { name="rvsel"; version="0.2.1"; sha256="04whdpn0cg60y7f744qlxg60hczww7asq3c8kmf379xxf5p5zdpq"; depends=[]; }; + rwars = derive2 { name="rwars"; version="1.0.0"; sha256="0kmwpr6gn3xsf0pqx153vblpjbhc34mzlgyv8xb2nw78nf8znfij"; depends=[httr]; }; rwfec = derive2 { name="rwfec"; version="0.2"; sha256="0wmalfms59zi8jdn2s2qbcdckfkifl9vg19hzx4389mm5gk6qsbh"; depends=[Rcpp]; }; rwirelesscom = derive2 { name="rwirelesscom"; version="1.4.3"; sha256="1q4s9m9k6i7x2vq5dwq7950sbq03i8ff6qk8l30x77689kpflqcb"; depends=[ggplot2 Rcpp]; }; rworldmap = derive2 { name="rworldmap"; version="1.3-6"; sha256="1q1h0n9qr0m5pdx10swrh9ddsvdj8kv5nqngrf3lnx9rg9iwivjk"; depends=[fields maptools sp]; }; rworldxtra = derive2 { name="rworldxtra"; version="1.01"; sha256="183z01h316wf1r4vjvjhbj7cg4xarn4b8qbmnn5y7nrrdndzi163"; depends=[sp]; }; rwt = derive2 { name="rwt"; version="1.0.0"; sha256="112wp682z4gkxsd3bqnlkdrh42bfzwnnhzyangxi2dh0qw63bgcr"; depends=[matlab]; }; + rwty = derive2 { name="rwty"; version="1.0.1"; sha256="1w66jlcbn8javlr2l0qinah3cxxadpjzvbz088saysyg277ikfxm"; depends=[ape coda GGally ggdendro ggplot2 phangorn plyr reshape2 viridis]; }; rwunderground = derive2 { name="rwunderground"; version="0.1.0"; sha256="10m0wgym6rdrgvmhh79q4jf0lh8wlrg04mvq0yvgnqfgcxn4rmir"; depends=[countrycode dplyr httr]; }; + rxSeq = derive2 { name="rxSeq"; version="0.99.3"; sha256="0g0n2pzbssz61psghjp1vrlspgph4s39x1k1zhcz7ivdn5pjb2nx"; depends=[MASS numDeriv VGAM]; }; ryouready = derive2 { name="ryouready"; version="0.4"; sha256="1d9z3paxcrkwsgn5g83x57jwz2iqarks30x0bwg48i5ispw6xbr3"; depends=[car ggplot2 stringr]; }; rysgran = derive2 { name="rysgran"; version="2.1.0"; sha256="1l2mx297iyipap8cw2wcw5gm7jq4076bf4gvgvij4q35vp62m85z"; depends=[lattice soiltexture]; }; - rzmq = derive2 { name="rzmq"; version="0.7.7"; sha256="0gf8gpwidfn4756jqbpdbqsl8l4ahi3jgavrrvbbdi841rxggfmx"; depends=[]; }; - s20x = derive2 { name="s20x"; version="3.1-16"; sha256="10z19q28wv3jnrs8lhban4a6hxqxgivcalq633p3hpa4zhw7nsj7"; depends=[]; }; - s2dverification = derive2 { name="s2dverification"; version="2.5.0"; sha256="1d8ydjgrrqxg29f5sdngch1l1zlg7bsrv04702v46x8x98521mc4"; depends=[abind bigmemory GEOmap geomapdata mapproj maps ncdf4 plyr SpecsVerification]; }; + rzmq = derive2 { name="rzmq"; version="0.9.0"; sha256="01fw6xpjq3h1ss38swivnp3rv7sh2lrdp0qcxz1ff7yln9sm5qsm"; depends=[]; }; + s2 = derive2 { name="s2"; version="0.1-1"; sha256="1k6329ra119ygb0z496894s4yra7f4dsg1ghpdk8k3ashd9yh6gd"; depends=[Rcpp]; }; + s20x = derive2 { name="s20x"; version="3.1-19"; sha256="1v16j3c38iak1wf887s02233g27fvwb06dyvdbg15g4dqh09sn7s"; depends=[]; }; + s2dverification = derive2 { name="s2dverification"; version="2.8.0"; sha256="13cjzxrjwahjhdw5q8lpbwgywgswqrcnj7rkff9kraan9lj83bkk"; depends=[abind bigmemory GEOmap geomapdata mapproj maps NbClust ncdf4 plyr SpecsVerification]; }; s4vd = derive2 { name="s4vd"; version="1.1-1"; sha256="1rp3z42nxmrvb942h3c5cl544lngzx7nrnnr4zjw7dq495bym7yp"; depends=[biclust foreach irlba]; }; + sAIC = derive2 { name="sAIC"; version="1.0"; sha256="1ih63cfs98kb61gwbmrx2yq7iacb5qa1qrh1a264041qd27r5pj5"; depends=[]; }; sBF = derive2 { name="sBF"; version="1.1.1"; sha256="0dankakl4rwl9apl46hk57ps4mvn2l1crw4gdqds26fc8w6f6rab"; depends=[]; }; + sBIC = derive2 { name="sBIC"; version="0.2.0"; sha256="1fx17c9w7v6wi02i293vjdahwxx4b5a118r655cl12gsd5qwqj11"; depends=[combinat flexmix hash igraph mclust poLCA R_methodsS3 R_oo Rcpp]; }; + sEparaTe = derive2 { name="sEparaTe"; version="0.2.1"; sha256="0k1c0wa052f1fprc9jn0i3g2cawxfhkan998jlhkr4iy986jynw9"; depends=[]; }; sExtinct = derive2 { name="sExtinct"; version="1.1"; sha256="1l6232z6c4z3cfl1da94wa6hlv9hj5mcb85fj1y0yparkvvl8249"; depends=[lattice]; }; + sFFLHD = derive2 { name="sFFLHD"; version="0.1.1"; sha256="19zhx0rc6h44301a5q68r9jbxzh12ci3387d1c319vdiw05nschy"; depends=[conf_design DoE_base]; }; sGPCA = derive2 { name="sGPCA"; version="1.0"; sha256="16aa5jgvkabrlxaf1p7ngrls79mksarh6di3vp26kb3d3wx087dx"; depends=[fields Matrix]; }; + sNPLS = derive2 { name="sNPLS"; version="0.1.4"; sha256="04q6a7b27lmc9racc8g1f5wrz1qa322crsa7kdb4r8kdpkm9pji6"; depends=[car ks MASS Matrix pbapply plotrix rgl]; }; sROC = derive2 { name="sROC"; version="0.1-2"; sha256="0cp6frhk9ndffb454dqp8fzjrla76dbz0mn4y8zz1nbq1jzmz0d3"; depends=[]; }; - sSDR = derive2 { name="sSDR"; version="1.1.0"; sha256="0f8j1m4j6y8pppaw05naharfqlzb5y8d9db29fi86pm7w1x49511"; depends=[MASS Matrix]; }; + sSDR = derive2 { name="sSDR"; version="1.2.0"; sha256="1fqsglqzsbzdvcdnwwf7mg6x20zfpw66x63r6avac3w1pz3n7kvx"; depends=[MASS Matrix]; }; sValues = derive2 { name="sValues"; version="0.1.4"; sha256="0y2cv3wls2y3zpbm2d098xj5n098yjl32yi7mwha6mhfwfa4y99l"; depends=[caTools ggplot2 reshape2]; }; + saasCNV = derive2 { name="saasCNV"; version="0.3.4"; sha256="12h5vrl55sb4wmx0hzib5iax8p0q2qzk19h15r0asfkh9l7qz94l"; depends=[DNAcopy RANN]; }; sac = derive2 { name="sac"; version="1.0.1"; sha256="1rl5ayhg5y84fw9w3zf43dijjlw9x0g0w2z4haw5xmxfni72ms8w"; depends=[]; }; saccades = derive2 { name="saccades"; version="0.1-1"; sha256="138a6g3hjmcyvflpxx1lhgxnb8svrynplrjnvzij7c4bzkp8zip6"; depends=[zoom]; }; sadists = derive2 { name="sadists"; version="0.2.2"; sha256="1w42j0g3yi3mqamkl9z3v103vv2hy2l1cy5ijbam0yddsaqqig3b"; depends=[hypergeo orthopolynom PDQutils]; }; - sads = derive2 { name="sads"; version="0.2.4"; sha256="15kszjlqz3rzxfmsfd8zbl6hx40z9j5drzyvac1h244dhrms6lal"; depends=[bbmle GUILDS MASS poilog VGAM]; }; + sads = derive2 { name="sads"; version="0.3.1"; sha256="17ndy8li01qgd86l3wvmkwjs2iz982bmrkxikv6y69s8mznd82qp"; depends=[bbmle GUILDS MASS poilog VGAM]; }; sae = derive2 { name="sae"; version="1.1"; sha256="1izww27cqd94yrfbszbzy44plznxsirzn0752ag7xw7qzm5ywp3d"; depends=[MASS nlme]; }; sae2 = derive2 { name="sae2"; version="0.1-1"; sha256="0fbbh2s0gjhyhypaccnd37b5g2rhyzq7mrm6s0z36ldg1pzi4dd9"; depends=[MASS]; }; - saeSim = derive2 { name="saeSim"; version="0.7.0"; sha256="03zfw18fvx8blh9iijh3rnglg8zbsvd9dq3kqv6ajz3hwr90z29g"; depends=[dplyr functional ggplot2 MASS parallelMap spdep]; }; + saeRobust = derive2 { name="saeRobust"; version="0.1.0"; sha256="1zin9ix4wx3qbx2mfjyn61l0g1k4dgn4ps79qn21y6l9r647ya9q"; depends=[aoos assertthat ggplot2 magrittr MASS Matrix memoise modules Rcpp RcppArmadillo spdep]; }; + saeSim = derive2 { name="saeSim"; version="0.8.0"; sha256="1yabhhrmp0d9vzs7cn7ngdilmyli10zqyv5ys2sx9s5pqqlvgbij"; depends=[dplyr functional ggplot2 MASS parallelMap spdep]; }; saemix = derive2 { name="saemix"; version="1.2"; sha256="1whwn54iiapdfig6qpzji3z3skir6jrs34dq78zlynibgrg95hx6"; depends=[]; }; saery = derive2 { name="saery"; version="1.0"; sha256="09x1v627llqbpiwkh1wr0z7gsndfdrjzag2hprhq1adbzh05k47z"; depends=[]; }; safeBinaryRegression = derive2 { name="safeBinaryRegression"; version="0.1-3"; sha256="1g68r6pp5l41rbgyfqgcha1gpsisnl0ybdmdqr4ylr43f61dpgvd"; depends=[lpSolveAPI]; }; safi = derive2 { name="safi"; version="1.0"; sha256="1km58w57kdmyfj4a97zhnjcka4q4pxm8r2br01qq2niaihpbzp98"; depends=[]; }; sampSurf = derive2 { name="sampSurf"; version="0.7-3"; sha256="165y2z9bhf7cyrh177fk87apqpgzyn69gf53f9mmii931cyykihw"; depends=[boot raster rasterVis sp]; }; sampleSelection = derive2 { name="sampleSelection"; version="1.0-4"; sha256="0by6l20hsaqvkcxpvn7lr6p2g78lb1464dygp7x4h8sq1fc4j4av"; depends=[Formula maxLik miscTools mvtnorm systemfit VGAM]; }; - samplesize = derive2 { name="samplesize"; version="0.2-2"; sha256="1sfyzrws6zy3m5dqyp1hqs6y5znkxfpayznz59a54s03r8c7xizk"; depends=[]; }; - samplesize4surveys = derive2 { name="samplesize4surveys"; version="2.4.0.900"; sha256="199g2gsbv1w1acn7nnlv2wbrhq7lc1mx8vvs1w9a9a8dkxdmml0g"; depends=[TeachingSampling]; }; - sampling = derive2 { name="sampling"; version="2.7"; sha256="0xp0djpgns2lbgshrpxcmqa7c180ds3ymqa5asyxxl74yiric7xi"; depends=[lpSolve MASS]; }; + samplesize = derive2 { name="samplesize"; version="0.2-4"; sha256="0n6z7jmf665lbj3g1mjy87a9fh53z85546bhrkmkgsysb0r9q6iq"; depends=[]; }; + samplesize4surveys = derive2 { name="samplesize4surveys"; version="3.1.2.400"; sha256="16q8pird6ic7001i3gkwqb2rlak9l853bf2m1y9njmdprsjs82yl"; depends=[TeachingSampling timeDate]; }; + samplesizelogisticcasecontrol = derive2 { name="samplesizelogisticcasecontrol"; version="0.0.6"; sha256="1xznql86r6snkkmk9g05jhdam06pr0qmg40mdzasl291nc50v5aa"; depends=[mvtnorm]; }; + sampling = derive2 { name="sampling"; version="2.8"; sha256="06pj7dan0mknpsblmlnk7am78qrnwgnql5vvx7vmbfvib7rj6s9m"; depends=[lpSolve MASS]; }; + samplingDataCRT = derive2 { name="samplingDataCRT"; version="1.0"; sha256="0ah3fi2sn642c8nicikhjhl1hdsjzshrf1j02swq0jaqggcqjdvk"; depends=[mvtnorm]; }; samplingEstimates = derive2 { name="samplingEstimates"; version="0.1-3"; sha256="1srdchlpxksfdqhf5qdvl7nz0qsxkxww7hzqj0q71asbzlq3am3p"; depends=[samplingVarEst]; }; - samplingVarEst = derive2 { name="samplingVarEst"; version="1.0-1"; sha256="049a964g6720p14fndvr68s7lypc0pac2bfdkm6fp278j8l34x7i"; depends=[]; }; - samplingbook = derive2 { name="samplingbook"; version="1.2.0"; sha256="1vynz6hsnz5d0vg66f8k67h24rb809k9chb4waymk6vwnp8lksz9"; depends=[pps sampling survey]; }; + samplingVarEst = derive2 { name="samplingVarEst"; version="1.0-2"; sha256="182y1srz2cs6rn8kh6nns5v29q0ww2jmv0yfp8b110qq23wd5mnd"; depends=[]; }; + samplingbook = derive2 { name="samplingbook"; version="1.2.1"; sha256="0xjsmsqj3ik2ffih8f2cpq6m5rpk603y697mh5m42frg20cqa87w"; depends=[pps sampling survey]; }; samr = derive2 { name="samr"; version="2.0"; sha256="0rsfca07pvmhfn7b49yk2ycw00wsq6dmrpv9haxz8q0xv7n5n2q9"; depends=[impute matrixStats]; }; sand = derive2 { name="sand"; version="1.0.2"; sha256="1y371ds86gcq2id996vp56h5dax2wm0mlk1ks2mp1k81n63l7wmf"; depends=[igraph igraphdata]; }; sandwich = derive2 { name="sandwich"; version="2.3-4"; sha256="0kbdfkqc8h3jpnlkil0c89z1192q207lii92yirc61css7izfli0"; depends=[zoo]; }; sanitizers = derive2 { name="sanitizers"; version="0.1.0"; sha256="1c1831fnv1nzpq8nw9krgf9fm8v54w0gvcn4443b6jghnnbhn2n6"; depends=[]; }; sankey = derive2 { name="sankey"; version="1.0.0"; sha256="0wm10f514sg3gfrz291k720kznnyssznyvr49c15i26bhb82m0q0"; depends=[simplegraph]; }; sanon = derive2 { name="sanon"; version="1.5"; sha256="1iikm7ivlz87kbq0ax9r1dz29zdq1kmhxd2imzc4hkvr1rwgciv6"; depends=[]; }; - sapa = derive2 { name="sapa"; version="2.0-1"; sha256="11xgd2ijfz5yn0zyl5gfy97h2cxi1vyxkrijy2s9b78wm7fzpnkv"; depends=[ifultools splus2R]; }; + sapa = derive2 { name="sapa"; version="2.0-2"; sha256="056xlh14dnzq4x7sbp7ff2k61jxy7110a742b502vz549qfrr5ds"; depends=[ifultools splus2R]; }; + sarima = derive2 { name="sarima"; version="0.4-3"; sha256="1y4wz4c27lmxkwc87diy5fvj25jzmflfji5b4ajx6pql3d3ral4s"; depends=[FitAR FitARMA ltsa PolynomF portes]; }; sas7bdat = derive2 { name="sas7bdat"; version="0.5"; sha256="0qxlapb6wdhzpwlmzlhscy3av7va3h6gkzsppn4sx5q960310an3"; depends=[]; }; satellite = derive2 { name="satellite"; version="0.2.0"; sha256="00znkb9wsg7yqxykb5bhl1chqir26h4ixhcqzxg6j1c4hpd2sakk"; depends=[plyr raster Rcpp]; }; saturnin = derive2 { name="saturnin"; version="1.1.1"; sha256="0cjp4h1s9ivn17v8ar48mxflaj9vgv92c8p9l2k5bc9yqx9mcs36"; depends=[Rcpp RcppEigen]; }; saves = derive2 { name="saves"; version="0.5"; sha256="1b4mfi2851bwcp0frx079h5yl6y1bhc2s8ziigmr8kwy1y1cxw10"; depends=[]; }; saws = derive2 { name="saws"; version="0.9-6.1"; sha256="0w40j6xczqs74z1z3na4510w06px7yn55s2mw9mddd6736l56fv1"; depends=[gee]; }; + sbfc = derive2 { name="sbfc"; version="1.0.1"; sha256="1xz8h1m5d5ahrz4wsy55amd5mxh3acjs5qmcn7gl6yh3pn0c8phf"; depends=[DiagrammeR discretization Matrix Rcpp RcppArmadillo]; }; sbgcop = derive2 { name="sbgcop"; version="0.975"; sha256="0f47mvwbsym4khwgl0ic3pqkw3jwdah9a48qi3q93d46p2xich61"; depends=[]; }; sbioPN = derive2 { name="sbioPN"; version="1.1.0"; sha256="0yvg55xnkhm35hfl7rldy2grb26hm4a68jr4x9n45fs7hhdylxri"; depends=[]; }; sbmSDP = derive2 { name="sbmSDP"; version="0.2"; sha256="1sl46lqi6w0s7ghv4bywhic56cm2vib3kawprga760m6igargx4y"; depends=[Rcpp RcppArmadillo]; }; + sbrl = derive2 { name="sbrl"; version="1.2"; sha256="1d0f2mlzzcghhvqagrr954qa69b5v47milw3iazxihh8q1qlird2"; depends=[arules Rcpp]; }; + sbtools = derive2 { name="sbtools"; version="1.1.6"; sha256="1wvd7xbkfyx88bi1vz30c6jb20fgsrcgpvkw4g4ym0966vhv1ca1"; depends=[curl httr jsonlite stringr]; }; sca = derive2 { name="sca"; version="0.9-0"; sha256="1xqdcxxsrsl8v2i8ifqcgb38vayz8ymay2sw4m9hmpma54a6r9j5"; depends=[]; }; scaRabee = derive2 { name="scaRabee"; version="1.1-3"; sha256="1yap3hi36f8hk93jn59nxrbgq8iw0xwkkm3pc2gb50cpcpaq41pd"; depends=[deSolve lattice neldermead]; }; scagnostics = derive2 { name="scagnostics"; version="0.2-4"; sha256="0fhc7d2nfhm8w6s6z1ls6i8d7c90h4q7rb92rz8pgq3xh031hpcf"; depends=[rJava]; }; - scales = derive2 { name="scales"; version="0.4.0"; sha256="19y6q4j8vpmc73dnn4ncp5wj44gri7m77ys3z2rn3crrcc9zc7l5"; depends=[dichromat labeling munsell plyr RColorBrewer Rcpp]; }; + scales = derive2 { name="scales"; version="0.4.1"; sha256="1lqccfmqdwrw0cjyqvw2zvgpk2jvnqrfb303l1raqyyf3zxqhav4"; depends=[dichromat labeling munsell plyr RColorBrewer Rcpp]; }; scalreg = derive2 { name="scalreg"; version="1.0"; sha256="06iqij1cyiw55ijzk2byrwh3m5iwsra7clx8l4v69rc236q8zbdi"; depends=[lars MASS]; }; - scam = derive2 { name="scam"; version="1.1-9"; sha256="1hx8y324bgwvv888d34wq0nnmqalfh5f26b5n36saaizm4a12wyf"; depends=[Matrix mgcv]; }; + scam = derive2 { name="scam"; version="1.2-1"; sha256="039iym85khym5m6g712lbd5s0c6dfw9xlpvlj29rwlcl1dkr1g7v"; depends=[Matrix mgcv]; }; + scan = derive2 { name="scan"; version="0.20"; sha256="1xyng9dlfmp7n2h91n4xy9lx3jm205gjiizdqk1yj1qw8mmahvqc"; depends=[nlme]; }; + scanstatistics = derive2 { name="scanstatistics"; version="0.1.0"; sha256="0snscxaw2j406bi29ns0z34lb3q39fq3wikkdnps6gkvxg97614i"; depends=[data_table gamlss_dist magrittr plyr sets]; }; scape = derive2 { name="scape"; version="2.2-0"; sha256="0dgbh65fg6i5x4lpfkshn382zcc4jk1wp62pwd2l2f59pyfb92a3"; depends=[coda Hmisc lattice]; }; scar = derive2 { name="scar"; version="0.2-1"; sha256="04x42414qxrz8c7xrnmpr00r46png2jy5giwicdx6gx8jwrkzhzs"; depends=[]; }; - scatterD3 = derive2 { name="scatterD3"; version="0.6.1"; sha256="1d42fd2rzk5vgz7d971zv5f2yxm5zsy4awax9qzm9hdm5mf241c5"; depends=[digest ellipse htmlwidgets]; }; - scatterplot3d = derive2 { name="scatterplot3d"; version="0.3-36"; sha256="0bdxfdw23921h3rbpq0y4aixplzpkk95wgm2932kh0x7a4bnhswh"; depends=[]; }; + scatterD3 = derive2 { name="scatterD3"; version="0.8.1"; sha256="1fyk2z8ari73nbah2r4c677nm3v0whfia6sh39gr674cczp6vc8q"; depends=[digest ellipse htmlwidgets]; }; + scatterpie = derive2 { name="scatterpie"; version="0.0.6"; sha256="11ks8rarcgk8hj9vnhlj01v6z2kid0lv2nkkbqgj8gbcni9wgawr"; depends=[ggforce ggplot2 tidyr]; }; + scatterplot3d = derive2 { name="scatterplot3d"; version="0.3-38"; sha256="1mw1v725cdq24lfygjjmx3vmxzr2zpd332v0lham7g0p4r7lc8pb"; depends=[]; }; + scdhlm = derive2 { name="scdhlm"; version="0.3.1"; sha256="1b5x4kqvmkpb8wbgfhnwqakisw6hfnvama2bsnd8kvw4alfanxhm"; depends=[nlme]; }; scenario = derive2 { name="scenario"; version="1.0"; sha256="0v1b00kiny21yx4qkk2x51cy1zqibdnd68z76qia7h5py28yhxsi"; depends=[]; }; - schoRsch = derive2 { name="schoRsch"; version="1.2"; sha256="1dz4mws227a5h3kkmpnz06liy9n3k01ihvcxxwnj8283w3b23bci"; depends=[]; }; + schoRsch = derive2 { name="schoRsch"; version="1.4"; sha256="19k34i74ira71v0r5gz9rfnbadnjzi0wpxcm4zqqn7y6jpmfbd11"; depends=[]; }; scholar = derive2 { name="scholar"; version="0.1.4"; sha256="088clkpllpjv9rjb45v46dga4ig11ifvfyclgfgcgqvxy5cn92jr"; depends=[dplyr httr R_cache rvest stringr xml2]; }; schoolmath = derive2 { name="schoolmath"; version="0.4"; sha256="06gcmm294d0bs5whvknrq48sk7li961lzy4bcncjg052zbbpn67x"; depends=[]; }; schumaker = derive2 { name="schumaker"; version="0.3"; sha256="0y2jyy3za7xi8l9kc0z35mqc7a29lbxmaqgax8frljmqsnwkwwhp"; depends=[]; }; schwartz97 = derive2 { name="schwartz97"; version="0.0.6"; sha256="0l34f30l75zrg3n377jp0cw7m88cqkgzy6ql78mrx8ra88aspfzn"; depends=[FKF mvtnorm RUnit]; }; scidb = derive2 { name="scidb"; version="1.2-0"; sha256="17y1bml8kb896l3hsw356qdj25sfbdvm10dyxhaafdgcbp5ywcrn"; depends=[digest iterators Matrix RCurl zoo]; }; + scientoText = derive2 { name="scientoText"; version="0.1"; sha256="0f18hg9s50lbbgl0fqjv45yhynpnsxj8wwm07g126snzr68gbd21"; depends=[stringr tm]; }; scio = derive2 { name="scio"; version="0.6.1"; sha256="0h15sscv7k3j7qyr70h00n58i5f44k96qg263mxcdjk9mwqr0y65"; depends=[]; }; sciplot = derive2 { name="sciplot"; version="1.1-0"; sha256="0na4qkslg3lns439q1124y4fl68dgqjck60a7yvgxc76p355spl4"; depends=[]; }; sclero = derive2 { name="sclero"; version="0.2"; sha256="1vqysby822s958msnwcqmz78193vrgmpf6si1jnfb9cj90hh7wgg"; depends=[plyr RImageJROI spatstat]; }; - scmamp = derive2 { name="scmamp"; version="0.2.5"; sha256="1i0fkmpkdjbjwvh1y4synplafvcx9bjyf8i856sm5i3kjyh6vx46"; depends=[ggplot2 graph reshape2 Rgraphviz]; }; + scmamp = derive2 { name="scmamp"; version="0.2.55"; sha256="17qhj9l1akxachaimy9d5rls8adph8aalj3qr6ckip29a8ma9gf7"; depends=[ggplot2 graph reshape2 Rgraphviz]; }; score = derive2 { name="score"; version="1.0.2"; sha256="1p289k1vmc7qg70rv15x05dyb92r7s6315whr1ibi40sqln62a5s"; depends=[msm]; }; + scorer = derive2 { name="scorer"; version="0.2.0"; sha256="1mc4hxcrqzh4dmz5fy40740bnrp4fxia81fj3cdw9382p67ivhim"; depends=[Rcpp]; }; scoring = derive2 { name="scoring"; version="0.5-1"; sha256="0vxjcbp43h2ipc428qc0gx7nh6my7202hixwhnmspl4f3kai3wkp"; depends=[]; }; + scoringRules = derive2 { name="scoringRules"; version="0.9.2"; sha256="04vkw2azyj1xsnyr58cgagajcd2f7r0843i9v77p4wvzv96rl851"; depends=[MASS Rcpp RcppArmadillo]; }; scout = derive2 { name="scout"; version="1.0.4"; sha256="0vr497g7g1xhf75cwjbjsns2fvdzy86iibbf5w0g2xylw82s4lh2"; depends=[glasso]; }; + scphaser = derive2 { name="scphaser"; version="1.0.0"; sha256="1n5ihdpjclpiwg2i6v8m46ysjg53fzsr0j60ijnvrq328y0iqis4"; depends=[BiocParallel cluster Hmisc R_utils]; }; scrapeR = derive2 { name="scrapeR"; version="0.1.6"; sha256="1rqgqpn9rc43rh356z9gb51pjhdczr9a9mgv0i078nniq156rmlb"; depends=[RCurl XML]; }; scrime = derive2 { name="scrime"; version="1.3.3"; sha256="1vp7ai10m0f3s0hywyqh0yllxj6z6p795zqpr6vp58fh6yq20x73"; depends=[]; }; - scriptests = derive2 { name="scriptests"; version="1.0-15"; sha256="1f55rnz4zbywyn79l2ac2600k95fwxgnyh1wzxvyxjh4qcg50plv"; depends=[]; }; - scrm = derive2 { name="scrm"; version="1.6.0-2"; sha256="1a3m56j4ca526mjhc7h0967k5bja336dw1bpna119l5yic6hkc1n"; depends=[Rcpp]; }; + scriptests = derive2 { name="scriptests"; version="1.0-16"; sha256="11l145gvzkxqwbzw976rq94krly1p4lahqw051dwaacarq4hnrdg"; depends=[]; }; + scrm = derive2 { name="scrm"; version="1.7.2-0"; sha256="1i4mdymds8xmxcxzc7a9lcmy2q11gmdgnfbm2hircf07j5pbb2d8"; depends=[Rcpp]; }; scrubr = derive2 { name="scrubr"; version="0.1.1"; sha256="0dqsk6vvc79qmjcr1gdksqzbd064nkyqfj2mxg6z7aifqgxs8zzz"; depends=[lazyeval magrittr Matrix qlcMatrix]; }; - scrypt = derive2 { name="scrypt"; version="0.1.0"; sha256="1hc1rziigwggdx2pvklldkw88mdzbwa8b8a2a0ip4cm1w6flsl9n"; depends=[Rcpp]; }; + scrypt = derive2 { name="scrypt"; version="0.1.1"; sha256="0lgnmag2yr5r67kqni2mpbvflqzaq8icilcxqja7c8fzw6xxzjrx"; depends=[Rcpp]; }; scs = derive2 { name="scs"; version="1.1-1"; sha256="1qx8b73g5v7mjx85lx5bln6j6i9r7m238i7hm8adr2jrbl33532y"; depends=[Matrix]; }; scuba = derive2 { name="scuba"; version="1.8-0"; sha256="1hlgvbcx7xmpaaszyqvhdwvwmf8z209jkf6aap205l3xkkc692c4"; depends=[]; }; + scvxclustr = derive2 { name="scvxclustr"; version="0.1"; sha256="0d72hr9jcw513mapx1plif07b4qsi9b9pad6dwrqlh3z8kb8mn4j"; depends=[cvxclustr gglasso igraph Matrix mclust Rcpp RcppEigen]; }; sdPrior = derive2 { name="sdPrior"; version="0.3"; sha256="0d3w75p3r2h07xhp7fj4si1y4sav8vs0lq6h2h4fn4f2inn3l0vl"; depends=[caTools GB2 MASS]; }; sda = derive2 { name="sda"; version="1.3.7"; sha256="1v0kp6pnjhazr8brz1k9lypchz8k8gdaby8sqpqzjsj8klghlcjp"; depends=[corpcor entropy fdrtool]; }; - sdcMicro = derive2 { name="sdcMicro"; version="4.6.0"; sha256="0j6adz04smp8pbg62w7hyqp2wl1cqazmxf4vnvb4jxcqw69qxd74"; depends=[car cluster data_table e1071 ggplot2 knitr MASS Rcpp rmarkdown robustbase sets xtable]; }; - sdcMicroGUI = derive2 { name="sdcMicroGUI"; version="1.2.0"; sha256="0bhrpric17y1ljm18a00i6bkxfq1cpljfkib8qbb4jyj5s50f3ps"; depends=[cairoDevice foreign gWidgets gWidgetsRGtk2 Hmisc sdcMicro vcd]; }; - sdcTable = derive2 { name="sdcTable"; version="0.20.3"; sha256="03ljsk1y1l0771ika013qgdm3zd3q60lxc2a11dnaglnz4pmvyx1"; depends=[data_table lpSolveAPI Rcpp Rglpk stringr]; }; + sdat = derive2 { name="sdat"; version="1.0"; sha256="1rp2s3y44f3vj0p16j1k2rrs44kmnzy9k0lpcm9ga801nbv93saz"; depends=[]; }; + sdcMicro = derive2 { name="sdcMicro"; version="5.0.0"; sha256="1ppqs47p4zha30axgwyvf0dhfrh2hjhi6cgwchikl9k9zwdh4byv"; depends=[car cluster data_table DT e1071 ggplot2 haven knitr MASS prettydoc Rcpp rhandsontable rmarkdown robustbase sets shiny shinyBS xtable]; }; + sdcTable = derive2 { name="sdcTable"; version="0.21.6"; sha256="17vi1mzr1kiq47dv1zskg63cpsqwxraj01g6sp6lx9vmw2cax74r"; depends=[data_table lpSolveAPI Rcpp Rglpk slam stringr]; }; sdcTarget = derive2 { name="sdcTarget"; version="0.9-11"; sha256="18cf276mh1sv16xn0dn8par4zg8k7y8710byxiih6db4i616fjpi"; depends=[doParallel foreach magic tuple]; }; sddpack = derive2 { name="sddpack"; version="0.9"; sha256="1963l8jbfwrqhqcpif73di9i5mb996r4f8smjyil6l7sdir7cg9l"; depends=[]; }; - sde = derive2 { name="sde"; version="2.0.14"; sha256="1j4lvbc4f78dkz7fkwb07498a0xnnz0xrszgmhz80s2fvc1c5djs"; depends=[fda MASS zoo]; }; + sde = derive2 { name="sde"; version="2.0.15"; sha256="0gxyhq9lafd62y68h7fd746a3jz3jdsm0shgwm2ylmp4a2f5cdmm"; depends=[fda MASS zoo]; }; sdef = derive2 { name="sdef"; version="1.6"; sha256="1y1l5fl7lh636kyvc2hwssdnifl055nrz3riplj4qqw88lkm1mk8"; depends=[]; }; + sdm = derive2 { name="sdm"; version="1.0-32"; sha256="1h20ap4q7bq2y92mrggir8fq4dlw6hz0pvpaqnj2v8fxng50fpjx"; depends=[raster sp]; }; sdmvspecies = derive2 { name="sdmvspecies"; version="0.3.2"; sha256="19avkag13ij1k65vqhmvcy8j50j8vrgw4mjc49x8i63w3d4z1wxh"; depends=[psych raster]; }; - sdnet = derive2 { name="sdnet"; version="2.03.3"; sha256="1884pil3brm7llczacxda6gki501ddyc5m8ggqjix64kbvw37slv"; depends=[]; }; - sdprisk = derive2 { name="sdprisk"; version="1.1-3"; sha256="1rwzi112fjckzxmhagpg60qm9a35fqx8g8xaypxsmnml6q00ysiq"; depends=[numDeriv PolynomF rootSolve]; }; + sdnet = derive2 { name="sdnet"; version="2.3.8"; sha256="10c962wbzgl2zpz7yx5kpryldbbq76qrd5pnz4rlmbaa9kfg08s5"; depends=[]; }; + sdprisk = derive2 { name="sdprisk"; version="1.1-5"; sha256="1c6mipq8sh8347i7m7dh47f69fr21xkrsk8yjgsdvcy41h8zijmf"; depends=[numDeriv PolynomF rootSolve]; }; sdtoolkit = derive2 { name="sdtoolkit"; version="2.33-1"; sha256="0pirgzcn8b87hjb35bmg082qp14idc5pfvm6dikpgkswag23hwh8"; depends=[]; }; sdwd = derive2 { name="sdwd"; version="1.0.2"; sha256="0l0w4jn2p9b7acp8gmlv4w8n662l397kbrm4glslik0vnmjv151w"; depends=[Matrix]; }; - seacarb = derive2 { name="seacarb"; version="3.0.11"; sha256="07kw9b8v73sz6nxpr0lb9f0ckkb6pgyw05nwpg43fkwc0qvykbvw"; depends=[oce]; }; + seacarb = derive2 { name="seacarb"; version="3.1.1"; sha256="1q7r9b6f38lnabfifyjvhc0aiphdp9z2lbh02da1vgpz538bv5zj"; depends=[oce]; }; sealasso = derive2 { name="sealasso"; version="0.1-2"; sha256="0cjy3fj170p5wa41c2hwscmhqxwkjq22vhg9kbajnq7df2s20jcp"; depends=[lars]; }; - searchConsoleR = derive2 { name="searchConsoleR"; version="0.1.2"; sha256="02a28ism9kgfdmn00pdv9p6xg24c5kr5n0shghg5fq9yhxap59iv"; depends=[googleAuthR stringr]; }; + searchConsoleR = derive2 { name="searchConsoleR"; version="0.2.1"; sha256="1hf87x3jfwl12d1gspnrgpzh90hpci5gh54hasi6bx6z8xw44ssb"; depends=[googleAuthR stringr]; }; searchable = derive2 { name="searchable"; version="0.3.3.1"; sha256="0xc87i2q42j7dviv9nj4hkgjvpfiprkkjpgzwsy47vp7q8024dv0"; depends=[magrittr stringi]; }; seas = derive2 { name="seas"; version="0.4-3"; sha256="1n0acg6fvaym4nx1ihw0vmb79csds0k4x9427qmcyxbl9hxxmllp"; depends=[]; }; season = derive2 { name="season"; version="0.3-5"; sha256="08f382kq51r5g9p5hsnjf17dwivhx1vfgmmwp1vzmbqx1drlqkzx"; depends=[coda ggplot2 MASS mgcv survival]; }; - seasonal = derive2 { name="seasonal"; version="1.2.1"; sha256="0y85z9rgqyzfry8ak5bi565jhkfks1xd2zhjyh63p823cyjln6cf"; depends=[x13binary]; }; + seasonal = derive2 { name="seasonal"; version="1.5.1"; sha256="0gwjzp7syg20qbv7jp97ibd51905fkxdsfvpjmvk4zgxd5p69cfm"; depends=[x13binary]; }; + seasonalview = derive2 { name="seasonalview"; version="0.2"; sha256="1gmg9641niazf3vs4ranqyi9i4bv23msxp11r6dyhcm9apxqlyxs"; depends=[dygraphs htmlwidgets openxlsx seasonal shiny shinydashboard xtable xts zoo]; }; seawaveQ = derive2 { name="seawaveQ"; version="1.0.0"; sha256="19vm1f0qkmkkbnfy1hkqnfz6x2a7g9902ka76bhpcscynl69iy56"; depends=[lubridate NADA survival]; }; - secr = derive2 { name="secr"; version="2.10.2"; sha256="14l284qhnic7ng6zpnnfxqk4gxlmx9xlfb675k5691x2bdy4z8gx"; depends=[abind MASS mgcv nlme raster sp]; }; - secrdesign = derive2 { name="secrdesign"; version="2.3.0"; sha256="1f5swggkky721z0js2jr1gb3mrx9h6qlld70bjd86x9f73s9cm0n"; depends=[abind secr]; }; + secr = derive2 { name="secr"; version="2.10.4"; sha256="034ad8w9p478552ax7gr5yp3fh6r968b92rmisjnags8x1vsynda"; depends=[abind MASS mgcv nlme raster sp]; }; + secrdesign = derive2 { name="secrdesign"; version="2.4.0"; sha256="0v9d94ra614884imv29qwhr4zkx3dzssdpz8nv86k1kigx51w1xp"; depends=[abind secr]; }; secrlinear = derive2 { name="secrlinear"; version="1.0.5"; sha256="084d0spshf3lh1m50kyb0r8x9lz4yrfj6b7snywffxhqyjw147hf"; depends=[igraph maptools MASS secr sp]; }; - seeclickfixr = derive2 { name="seeclickfixr"; version="1.0.0"; sha256="15dgq7bc71y5jykvpzpwbjxcw3jjh9vf12pwyaizhkb5fkyrjjmf"; depends=[jsonlite RCurl]; }; + seeclickfixr = derive2 { name="seeclickfixr"; version="1.1.0"; sha256="1agsqq2msrqrssffc6liyjjs6nqm90xy2inlcjbkdac5dhinjc4n"; depends=[jsonlite RCurl]; }; seedy = derive2 { name="seedy"; version="1.3"; sha256="1a21sl8i7z12cjaqj08lkq3viazxlgxv82vaarm58fgbpsvdi0m0"; depends=[]; }; seeg = derive2 { name="seeg"; version="1.0"; sha256="1d45vl075p4qbd74gpaa8aw1h82p9n633fym10yp9bmcv4gwksg6"; depends=[car sgeostat spatstat]; }; seem = derive2 { name="seem"; version="1.0"; sha256="0cjdi9c89bqvrx9gzxph958cfqicc1qfnzsair0gvsk3cxsrw6bf"; depends=[]; }; - seewave = derive2 { name="seewave"; version="2.0.2"; sha256="1dr2kldx85fbzawy5lp5z3044hsh72vdyirl15b12w8nrh2p1a5z"; depends=[tuneR]; }; + seewave = derive2 { name="seewave"; version="2.0.5"; sha256="1ml0jcqb6i6v0xgarvzg51rgax6lsf6y2255jq1kfz4v8n39vnh0"; depends=[tuneR]; }; seg = derive2 { name="seg"; version="0.5-1"; sha256="0gsdbq7b5wpknhlilrw771japr63snvx4vpirvzph4fjyby1c7rg"; depends=[sp splancs]; }; - segmag = derive2 { name="segmag"; version="1.2.2"; sha256="130saznhssg0qsc34fcw80x92mmqhjgizrb4fxpjsg7a8jjrclp8"; depends=[Rcpp]; }; + segmag = derive2 { name="segmag"; version="1.2.4"; sha256="1i717xg1z7s35pkwzywgjf9wx7zj9xksv0k87h7p1q62y073qbqm"; depends=[plyr Rcpp]; }; segmented = derive2 { name="segmented"; version="0.5-1.4"; sha256="1740cvx2q4v23g4q0zkvg50s5bv8jcrlzzhm7fac4xn0riwmzp5i"; depends=[]; }; seismic = derive2 { name="seismic"; version="1.0"; sha256="02d11c3filzghi8cvryikaidmk40d4z3qxsqs7bjdhxyf814caw8"; depends=[]; }; - seismicRoll = derive2 { name="seismicRoll"; version="1.0.1"; sha256="1lls2gbx994j7y3kwpf00ngga5qlzqxwc3cy9x21gy9iq2s8hn0x"; depends=[Rcpp]; }; + seismicRoll = derive2 { name="seismicRoll"; version="1.1.2"; sha256="183lx9lgmi06lv1l4gbmlmblfgjzhph4aavdnxrykpp6122hsq61"; depends=[Rcpp]; }; sejmRP = derive2 { name="sejmRP"; version="1.3"; sha256="0qrlzanmqqqwsb83rh2wys4jl2mz1ijwznnx32i2gk4h1nvkwxbx"; depends=[DBI dplyr RPostgreSQL rvest stringi XML xml2]; }; selectMeta = derive2 { name="selectMeta"; version="1.0.8"; sha256="0i0wzx5ggd60y26lnn4qk4n8h27ahll9732026ppks1djx14cdy0"; depends=[DEoptim]; }; selection = derive2 { name="selection"; version="1.0"; sha256="1w2mzb16frcbh55icc5g8ai3hri9j6dhp7h0kc96iaspphnfw4n8"; depends=[fifer norm]; }; - selectiongain = derive2 { name="selectiongain"; version="2.0.50.1"; sha256="025y0g5jj416k1a71jxwyr69cza6xvfq3gv3lv3m7i3sbd4bsmaj"; depends=[mvtnorm]; }; - selectiveInference = derive2 { name="selectiveInference"; version="1.1.3"; sha256="0f173mzijw34f9m7xqljv1pczk8pvqlwmi30p6i0zld6amg6h76s"; depends=[glmnet intervals]; }; - selectr = derive2 { name="selectr"; version="0.2-3"; sha256="1ppm1f6mwfwbq92iwacyjn46k1d8148j4zykmjvw8as6c8blgap1"; depends=[stringr XML]; }; + selectiongain = derive2 { name="selectiongain"; version="2.0.591"; sha256="11gd9xdn3jl3mg3c9ykw8bqvcxhihn19iqsy8dl8bacijjv84bva"; depends=[mvtnorm]; }; + selectiveInference = derive2 { name="selectiveInference"; version="1.2.2"; sha256="1rmrvwa54xj3rxmfnhr2vwdxv9s3xlv35pqf08iiy525nqd2hsy5"; depends=[glmnet intervals survival]; }; + selectr = derive2 { name="selectr"; version="0.3-1"; sha256="0jc946456qp3g2icaifrqn4z7z5pn23rfw77796aa8mmlkp7qkyv"; depends=[stringr]; }; selectspm = derive2 { name="selectspm"; version="0.2"; sha256="0wvhlzhl0janhms107xczmilpmr4y26jgk0ag3g34iqba7fbnfqd"; depends=[ecespa spatstat]; }; + seleniumPipes = derive2 { name="seleniumPipes"; version="0.3.7"; sha256="1krpzh2gy3yl07c2n1d8q21xjc2qcv5ac1kv7212710bxkdyfad6"; depends=[httr jsonlite magrittr whisker xml2]; }; selfea = derive2 { name="selfea"; version="1.0.1"; sha256="0zyxbd5vg8nhigill3ndcvavzbb9sbh5bz6yrdsvzy8i5gzpspvx"; depends=[ggplot2 MASS plyr pwr]; }; selfingTree = derive2 { name="selfingTree"; version="0.2"; sha256="18ylxmg2ms4ccgm4ahzfl65x614wiq5id7zazjjz5y75h8gs7gzj"; depends=[foreach]; }; - sem = derive2 { name="sem"; version="3.1-6"; sha256="1gx0j3ignpmgy3qvnp0qjmhlzbxj0wjfr6jfs9d29cnq8b38p73c"; depends=[boot DiagrammeR MASS matrixcalc mi]; }; + sem = derive2 { name="sem"; version="3.1-8"; sha256="17qid9jvkmccgnw56jwxmkc6hmanc7vp1c6acj5nv9j47f4bc3jv"; depends=[boot MASS matrixcalc mi]; }; semGOF = derive2 { name="semGOF"; version="0.2-0"; sha256="1lsv72yaza80jqadmah7v2cpfqfay57y12hcz6brvia6bmr5qagb"; depends=[MASS matrixcalc sem]; }; semPLS = derive2 { name="semPLS"; version="1.0-10"; sha256="0q5linjyv5npkw4grx3vq58iq2q1grf06ikivhkg8w7rvb7pqn6b"; depends=[lattice]; }; semPlot = derive2 { name="semPlot"; version="1.0.1"; sha256="0sdp970qb4mz5vzncfmqxvg1z12gmiyqi3yaz9x2drm3rgzavy83"; depends=[colorspace corpcor igraph lavaan lisrelToR plyr qgraph rockchalk sem XML]; }; - semTools = derive2 { name="semTools"; version="0.4-11"; sha256="00b695ylgx9r5rxaq6zg05nk99kzr00sw379dxr6mar0kpazy4qn"; depends=[lavaan]; }; + semTools = derive2 { name="semTools"; version="0.4-14"; sha256="1j1chman14i908c009lf0jgdmrrb8avgp8nif1i9wlj6vgif890c"; depends=[lavaan]; }; semdiag = derive2 { name="semdiag"; version="0.1.2"; sha256="0kjcflw7dn907zx6790w7hnf5db6bf549whfsc0c2r173kf13irp"; depends=[sem]; }; + semds = derive2 { name="semds"; version="0.9-2"; sha256="0ig8b7ii1c8av0il904b71lzr8lqdiibwf16yj5dp8n4xc80bryh"; depends=[minpack_lm pracma]; }; semiArtificial = derive2 { name="semiArtificial"; version="2.0.1"; sha256="1bjjqcm6r3hxj5752ywdzllh7wr4rwzqlrkf50wpdl05za3fbfd9"; depends=[cluster CORElearn dendextend fpc ks logspline MASS mclust nnet robustbase RSNNS timeDate]; }; semisupKernelPCA = derive2 { name="semisupKernelPCA"; version="0.1.5"; sha256="1v8wdq63b1gqicj8c9a24k0w7cc0bkg0mnc9z5mklsfcl7g0g6k9"; depends=[datautils irlba]; }; semsfa = derive2 { name="semsfa"; version="1.0"; sha256="1x227rigjk9glq5x9lp6xxcf3y9i73rv3mrj7lkr2ycnsx8zz57h"; depends=[doParallel foreach iterators mgcv moments np]; }; + semtree = derive2 { name="semtree"; version="0.9.9"; sha256="1a66xiy0p9q3bmppc8rhnd0lfip2vxjjqi9094zqvnclkznrc9ar"; depends=[bitops digest OpenMx rpart rpart_plot sets]; }; + semver = derive2 { name="semver"; version="0.2.0"; sha256="10wpkyms2cix3bsin2q0qhkbl445pwwpa5gm2s4jjw1989namkxy"; depends=[assertthat Rcpp]; }; sendmailR = derive2 { name="sendmailR"; version="1.2-1"; sha256="0z7ipywnzgkhfvl4zb2fjwl1xq7b5wib296vn9c9qgbndj6b1zh4"; depends=[base64enc]; }; sendplot = derive2 { name="sendplot"; version="4.0.0"; sha256="0ia2xck94nwirwxi38nv0viz5wb8291yiak6f0wgwh84irsrfp1h"; depends=[rtiff]; }; - sensR = derive2 { name="sensR"; version="1.4-6"; sha256="1nw8kkk70nrw8i95v52ncg4zrmkq84w94d5d1c474ap0pfg8rfpj"; depends=[MASS multcomp numDeriv]; }; - sensitivity = derive2 { name="sensitivity"; version="1.11.1"; sha256="1v4lzy687r66jmxgm0fy81wgj70ak58hd13h1jn60wb5j3p91qki"; depends=[boot]; }; + sensR = derive2 { name="sensR"; version="1.4-7"; sha256="06dzb1sid7wq9i0x6pnsb5srk9z9pv9y8y5br6bkcbm6k3iv5jsv"; depends=[MASS multcomp numDeriv]; }; + sensiPhy = derive2 { name="sensiPhy"; version="0.6.0"; sha256="00fw8fm3n4jlz5v9fvni4ff3x2fv0ixpjddk2mn6cac7yqfsha6p"; depends=[ape caper ggplot2 phylolm]; }; + sensitivity = derive2 { name="sensitivity"; version="1.14.0"; sha256="042bwjp906jmhsp09n03nf6xkzfvgad13f0bkm3nk5qf9xfjfszm"; depends=[boot]; }; sensitivity2x2xk = derive2 { name="sensitivity2x2xk"; version="1.01"; sha256="1r829k939zzmi0j4chdaniajchcflmmjrl3a9hwnkg0wkfnjbvdl"; depends=[BiasedUrn mvtnorm]; }; sensitivityPStrat = derive2 { name="sensitivityPStrat"; version="1.0-6"; sha256="0rfzvkpz7dll3173gll6np65dyb40zms63fkvaiwn0lk4aryinlh"; depends=[survival]; }; + sensitivityfull = derive2 { name="sensitivityfull"; version="1.0.0"; sha256="162gf45gby7kz93j6xbv2fhzcmjqk55897m58xf64csphgfv6ibv"; depends=[]; }; sensitivitymv = derive2 { name="sensitivitymv"; version="1.3"; sha256="1bxf85q91smnsl2lsig43vk0c63c805d8ry1xh3w6q675djj14ad"; depends=[]; }; sensitivitymw = derive2 { name="sensitivitymw"; version="1.1"; sha256="1bknnfkkqgmchabcjdfikm37sn5k41ar8lpnjw58i8qh7yzq237i"; depends=[]; }; sensory = derive2 { name="sensory"; version="1.1"; sha256="1zd0ajrymxi6gygcq9fqgwgy0g6c3cqz53x0k5m0ihbmh11rc7s7"; depends=[gtools MASS Matrix]; }; + sentimentr = derive2 { name="sentimentr"; version="0.4.0"; sha256="0sfr1bgv8lap91bw9q7z4d1cn64kmn2iqf8mkxxcp9jcskb0qp0z"; depends=[data_table ggplot2 stringi syuzhet]; }; separationplot = derive2 { name="separationplot"; version="1.1"; sha256="0qfkrk8n6jj8l7ywngwsaikfwmd9hbrpr43x0l9wkjjp1asgs5l6"; depends=[]; }; seqCBS = derive2 { name="seqCBS"; version="1.2"; sha256="1kywi3kvvl9y6nm7cwf6fj8gz9gzznp5va336g1akzgy77k82d8v"; depends=[clue]; }; seqDesign = derive2 { name="seqDesign"; version="1.1"; sha256="1694swd8ik9fbiflmnw4xpq82kq18rqzkw0dv5pvq30c47xjgamv"; depends=[survival xtable]; }; - seqHMM = derive2 { name="seqHMM"; version="1.0.5"; sha256="0dy0iiijfnsq7i49hj2vc7j8n1d823laa63q6pkrjni9fb4xw9v8"; depends=[gridBase igraph Matrix nloptr numDeriv Rcpp RcppArmadillo TraMineR]; }; - seqMeta = derive2 { name="seqMeta"; version="1.6.5"; sha256="0ws6xa1bcibg49vax4in9gc1pvf19ggf95nfy0qr3pp5fpbqw29d"; depends=[CompQuadForm coxme Matrix survival]; }; + seqHMM = derive2 { name="seqHMM"; version="1.0.6"; sha256="04cfii5i337g11qdrhq3sflas2vv8avy4qylxvridxqibvk70pjz"; depends=[gridBase igraph Matrix nloptr numDeriv Rcpp RcppArmadillo TraMineR]; }; + seqMeta = derive2 { name="seqMeta"; version="1.6.7"; sha256="11dscdrlnk5jzg0q2g59qis4xjr4xs86bi463jmhq53n9gsb4i1l"; depends=[CompQuadForm coxme Matrix survival]; }; seqPERM = derive2 { name="seqPERM"; version="1.0"; sha256="1i8ai4gxybh08wxjh96m6xlqxhh7ch0xihjs879snmy4zqfi0pap"; depends=[]; }; seqRFLP = derive2 { name="seqRFLP"; version="1.0.1"; sha256="1i98hm8wgwr8b6hd237y2i9i0xgn35w4n2rxy4lqc5zq71gkwkvk"; depends=[]; }; - seqinr = derive2 { name="seqinr"; version="3.1-3"; sha256="0bbjfwbqg74wsamb3iz01g0ssdpdpg65gh00y9xlnpk4wb990n4n"; depends=[ade4]; }; - seqminer = derive2 { name="seqminer"; version="5.0"; sha256="1v9z0ip5jcmpbw4a5lmf4nll7d3khblcrqcjk7k1zplwj6xnbqfx"; depends=[]; }; - seqmon = derive2 { name="seqmon"; version="0.2"; sha256="075hc6vgl1w3nisrihf5w6mkkg9q601jsqxm9hk9yagyvvd7d78w"; depends=[]; }; + seqinr = derive2 { name="seqinr"; version="3.3-3"; sha256="1n1a2zqv1s5415fz2vgqys3nm282d6lkglbd1vprx4k76lp55gfn"; depends=[ade4 segmented]; }; + seqminer = derive2 { name="seqminer"; version="5.7"; sha256="0p75wyl70cvp36mwg5y74nv573j1gdqi15ac2a7xf61jmsq7ycpy"; depends=[]; }; + seqmon = derive2 { name="seqmon"; version="2.1"; sha256="0p7vbrx0l59wyxhg59a8nnnk1z46inys30rpchj0v5ggadaazjkx"; depends=[]; }; + seqtest = derive2 { name="seqtest"; version="0.1-0"; sha256="1bdfww9szh7h278id5xpfc39mxkcix3yvsdwc68wx3q3x0wxhqhq"; depends=[]; }; sequences = derive2 { name="sequences"; version="0.5.9"; sha256="17571m525b6a3k4f0m936wfq401181gx1fpb7x4v0fhaldzdmk3a"; depends=[Rcpp]; }; sequenza = derive2 { name="sequenza"; version="2.1.2"; sha256="0f3aj96qvbr1wqimlv6rxg0v34zlrgc6pbdy7sfkwfzs1n44q1xf"; depends=[copynumber squash]; }; - serial = derive2 { name="serial"; version="1.1"; sha256="06qmvkmgp04izq8dr6ky44dfr3z3cv1c9dxkalv57qxccshkc1xq"; depends=[]; }; - seriation = derive2 { name="seriation"; version="1.2-0"; sha256="0krbrv9f0lw5vjcfjnak541c4hmyvqwkvqdlrgiapmwhl6lp6z9s"; depends=[cluster colorspace dendextend gclus gplots MASS qap registry TSP]; }; + sequoia = derive2 { name="sequoia"; version="0.7.2"; sha256="0qvy9bmaai85gnhhrw1r59vzxll1r8r0h51cn88d6n7801yi9r3r"; depends=[plyr]; }; + serial = derive2 { name="serial"; version="1.2"; sha256="1zjzm5ym8z9g97sff6bg9p5dhjpj6g26wam9j9gklffiry8dd9li"; depends=[]; }; + seriation = derive2 { name="seriation"; version="1.2-1"; sha256="1h3zl3imrymz4kdzccnplc6w6b793csgq5r9cfjc37gbmjg3jf1j"; depends=[cluster colorspace dendextend gclus gplots MASS qap registry TSP]; }; seroincidence = derive2 { name="seroincidence"; version="1.0.5"; sha256="07lphrp7r3i87633q8g6svk2mxbsvq4blrf8gnm0p99hkmz8wgg9"; depends=[]; }; - servr = derive2 { name="servr"; version="0.3"; sha256="1p85ii0w3fydsjqg8mrrg972qmrdrw1a1kbgpikq4w40vxp33szl"; depends=[httpuv jsonlite mime]; }; - sesem = derive2 { name="sesem"; version="1.0.1"; sha256="0s4xkv6bc5nxhj09mk9agnj11b9h7swccs9jrn4lg3fy12vqhf5a"; depends=[gplots lavaan mgcv]; }; + servr = derive2 { name="servr"; version="0.5"; sha256="1ixcl9xjc1k9zvl6v6bsw4kpramr1h53b4s46qg8kahkqy6kqd8a"; depends=[httpuv jsonlite mime]; }; + sesem = derive2 { name="sesem"; version="1.0.2"; sha256="0b1xzv38wpkhhlq87xrvlh45b8ksbi8bg4ar5hrf8gxa19r9rmi5"; depends=[gplots lavaan mgcv]; }; session = derive2 { name="session"; version="1.0.3"; sha256="04mcy1ac75fd33bg70c47nxqxrmqh665m9r8b1zsz5jij1sbl8q5"; depends=[]; }; setRNG = derive2 { name="setRNG"; version="2013.9-1"; sha256="02198cikj769yc32v8m2qrv5c01l2fxmx61l77m5ysm0hab3j6hs"; depends=[]; }; sets = derive2 { name="sets"; version="1.0-16"; sha256="0pl0wnlgzyc2d87nkx90ficcww6lixmghhymhwi130vjjd0bqdjx"; depends=[]; }; + setter = derive2 { name="setter"; version="0.0-1"; sha256="10fwrx8yysp99rrkbnn3rbz79vyzr2h3p7zxxlqapw1k2lllp0r5"; depends=[assertive_base]; }; settings = derive2 { name="settings"; version="0.2.4"; sha256="092sv6nccm6p2d695l9w0zfi2xgymk12c8p8lhl9nb86mxrb3nry"; depends=[]; }; - setwidth = derive2 { name="setwidth"; version="1.0-4"; sha256="0i565phbfj0rff13nyz6sy8cn4cch4fcjfgkns3z6c94w11b4703"; depends=[]; }; severity = derive2 { name="severity"; version="2.0"; sha256="1mp19y2pn7nl9m8xfljc515kk5dirv0r2kypazpmd956lcivziqq"; depends=[]; }; + sf = derive2 { name="sf"; version="0.3-4"; sha256="0d5n8aw0d2ak96q4vlwmvk1g5m0acaqyr83l203wd470w4ksihqg"; depends=[DBI Rcpp units]; }; sfa = derive2 { name="sfa"; version="1.0-1"; sha256="1acqxgydf8j5csdkx0yf169x3yaa31r0ccdrqarh6vj1hacm89ad"; depends=[]; }; + sfc = derive2 { name="sfc"; version="0.1.0"; sha256="0cm4mfcfd9bhf2j5fppsihzrfipnldb6q3xradd88z9pwgrkfx2a"; depends=[dplyr sna tidyr triangle zoo]; }; + sfinx = derive2 { name="sfinx"; version="1.7.9"; sha256="0gnli24mi9zh5j9ycpraksf4z7crr27sv6j3ycww7jfq5lfhg8kp"; depends=[]; }; sfsmisc = derive2 { name="sfsmisc"; version="1.1-0"; sha256="0580piv4n1nispl3pa8nfjjfnb8iwaqky2dzdy0aqnxrxgrhqhvz"; depends=[]; }; sft = derive2 { name="sft"; version="2.0-7"; sha256="1fq1b32f08i4k9bv4hh7rhk1jj7kgans6dwh1bmawaqkchyab3jr"; depends=[fda]; }; sgPLS = derive2 { name="sgPLS"; version="1.4"; sha256="0yx3vg9rfm6jvrgfaky2dlbrbksa5475gx3g11x6i35nd2nb2p5z"; depends=[mixOmics]; }; sgRSEA = derive2 { name="sgRSEA"; version="0.1"; sha256="0vyypnq81l36x0j44q2l9wbf3x4krz4fzypi7vyqhaq97mkzaw5j"; depends=[]; }; sgd = derive2 { name="sgd"; version="1.1"; sha256="1kqpaxyacaq1fkmy4hsj62167gcmqng4pmafpdjdpqxwdqxz9xxf"; depends=[BH bigmemory ggplot2 MASS Rcpp RcppArmadillo]; }; + sgee = derive2 { name="sgee"; version="0.2-0"; sha256="1dpbkab3wzcqp9rgy9gxibjs2dcpb5ql1dlgg97rxjr1fkigwxgk"; depends=[copula mvtnorm]; }; sgeostat = derive2 { name="sgeostat"; version="1.0-27"; sha256="1iq9p2jk8bpv1h853a1l91d5c5dxnhkk3cmkd01siqqvj04hv4vb"; depends=[]; }; - sglOptim = derive2 { name="sglOptim"; version="1.2.0"; sha256="06a70q7i93pyyadqngg1qd0kz52m73fpqlji6jxsiyixajcqn2q5"; depends=[BH Matrix Rcpp RcppArmadillo RcppProgress]; }; + sglOptim = derive2 { name="sglOptim"; version="1.3.5"; sha256="1ys4hlpfsyc0iwhr1gpwzf47snpmmyxv0clb2vbcfm0lr272h25l"; depends=[BH doParallel foreach Matrix Rcpp RcppArmadillo RcppProgress]; }; sglasso = derive2 { name="sglasso"; version="1.2.2"; sha256="1yk9wvg98a2l9kdaksy75av9z9iz27v5d2zpsqhabqwkwfh6wkad"; depends=[igraph Matrix]; }; sglr = derive2 { name="sglr"; version="0.7"; sha256="11gjbvq51xq7xbmpziyzwqfzf4avyxj2wpiz0kp4vfdj3v7p4fp9"; depends=[ggplot2 shiny]; }; - sgof = derive2 { name="sgof"; version="2.2"; sha256="087f4nbx9ppzi5za3f4w4msq2gd3r08v16fihppa30nqydg3ssbj"; depends=[poibin]; }; + sgof = derive2 { name="sgof"; version="2.3"; sha256="12bpyvg5df1m2ar6frpi10zlj3dk9h61r13rzn3w5a3nyk8gljsg"; depends=[poibin]; }; sgr = derive2 { name="sgr"; version="1.3"; sha256="0zxmrbv3fyb686hcgfy2w1w2jffxf41ab8yc90dsgf931s9c55wn"; depends=[MASS]; }; sgt = derive2 { name="sgt"; version="2.0"; sha256="0qb3maj5idwafs40fpdfrwzkadnh5yg8fvfzfs51p9yy69kbmlkx"; depends=[numDeriv optimx]; }; - shades = derive2 { name="shades"; version="0.1.0"; sha256="164m4xm63swp1b1kr86i4nnja79kfhzd3pyc1qwyby838brkm5aj"; depends=[colorspace]; }; + shades = derive2 { name="shades"; version="0.2.0"; sha256="1r2xbz1h144pg53g3ayy7n08091gv5zj52p02gv7kihir2kzxj0w"; depends=[]; }; + shadow = derive2 { name="shadow"; version="0.2.0"; sha256="1p2g0anxl6ynvq97jy7qwy9p9pjmfpii7irh6arhvybz28v4ky00"; depends=[raster rgeos sp]; }; shape = derive2 { name="shape"; version="1.4.2"; sha256="0yk3cmsa57svcvbnm21pyr0s0qbhnllka8nmsg4yb41frjlqph66"; depends=[]; }; shapeR = derive2 { name="shapeR"; version="0.1-5"; sha256="17fq4gsdvyniq7n4x1xdvb5kk50184i7why3pdf1djjhknym087j"; depends=[gplots jpeg MASS pixmap vegan wavethresh]; }; shapefiles = derive2 { name="shapefiles"; version="0.7"; sha256="08ghndihs45kylbzd9wnxffn8ixvxjhjnjldjyd526ai2sj8xcgf"; depends=[foreign]; }; - shapes = derive2 { name="shapes"; version="1.1-11"; sha256="1zxckrl4pc6ppdbhp5h5ib4yp7iw7z3kciqibrijvbvjpkl1fl35"; depends=[MASS rgl scatterplot3d]; }; - sharpshootR = derive2 { name="sharpshootR"; version="0.9.1"; sha256="01qczwyh6gpw26qg77r5f9nrmfjd1glcbdxwvx0bdfa5j6m31iq4"; depends=[ape aqp circular cluster digest Hmisc igraph lattice latticeExtra plyr RColorBrewer reshape2 scales soilDB sp vegan]; }; + shapes = derive2 { name="shapes"; version="1.2.0"; sha256="0fnwcxnrhy5iqzzmrkbbpr4rirg4ixl96656ywcc1mhwv6d6iw0z"; depends=[MASS rgl scatterplot3d]; }; + sharpeRratio = derive2 { name="sharpeRratio"; version="1.1"; sha256="0rgsad8idhjyjgwlzk358jlqkqf6sk7g6vl3fchkamjzxnhbb8p9"; depends=[ghyp Rcpp]; }; + sharpshootR = derive2 { name="sharpshootR"; version="1.0"; sha256="1x9cava7b9lg8qpmjqlbkqmpc9a2dn8k4kl71s4himr4wzp9z4y3"; depends=[ape aqp circular cluster digest Hmisc igraph lattice latticeExtra plyr RColorBrewer reshape2 scales soilDB sp vegan]; }; sharx = derive2 { name="sharx"; version="1.0-5"; sha256="10sfjg6946jfk4051da0w1v89503av40wckqaabr12syf8kn0aw8"; depends=[dclone dcmle Formula]; }; - shazam = derive2 { name="shazam"; version="0.1.2"; sha256="16n7l02sm9jyvag43y048ga7p3zpsfhmh7ar4759r68zc14sgj9k"; depends=[alakazam data_table doParallel dplyr foreach ggplot2 iterators lazyeval scales SDMTools seqinr stringi tidyr]; }; - shiny = derive2 { name="shiny"; version="0.13.1"; sha256="0lz57iv0xv8j2iczwznkypb5syjh5rk6lnyp92icphz4qmbcpkaa"; depends=[digest htmltools httpuv jsonlite mime R6 xtable]; }; + shazam = derive2 { name="shazam"; version="0.1.4"; sha256="0gb6nahnkhhymq0bkxgb165rr1saqri43khgqx2xgm37s0wxqfc9"; depends=[alakazam ape data_table doParallel dplyr foreach ggplot2 igraph iterators lazyeval scales SDMTools seqinr stringi tidyr]; }; + shiny = derive2 { name="shiny"; version="1.0.0"; sha256="152v2z1cyg6893b0qd5rs12a2m9dbzk7ak04qvbcym0s9y4l0kf4"; depends=[digest htmltools httpuv jsonlite mime R6 sourcetools xtable]; }; shinyAce = derive2 { name="shinyAce"; version="0.2.1"; sha256="0ycka8rsw0178q9klfid97vdn5cbyx3r778nis5s3dqipdyazdm9"; depends=[shiny]; }; shinyBS = derive2 { name="shinyBS"; version="0.61"; sha256="0rhim4mbp4x9vvm7xkmpl7mhb9qd1gr96cr4dv330v863ra2kgji"; depends=[htmltools shiny]; }; - shinyFiles = derive2 { name="shinyFiles"; version="0.6.0"; sha256="08cvpvrsr1bh0yh17ap20bmwxa4bsan3h6bicrxzanl2dlwp8kvr"; depends=[htmltools RJSONIO shiny]; }; + shinyDND = derive2 { name="shinyDND"; version="0.1.0"; sha256="0nkvz4hmjzmxlzj4vkjrdy8xlbxapg1amk180irgvwicqldi4jpm"; depends=[htmltools shiny]; }; + shinyFeedback = derive2 { name="shinyFeedback"; version="0.0.2"; sha256="0zqfay21nn2mrjk33g60rqb5mdac15rl53kkny7ypblmiky0mlzz"; depends=[digest shiny]; }; + shinyFiles = derive2 { name="shinyFiles"; version="0.6.2"; sha256="1lphzqbzg482lv0xiamfv28n5nyjppss9zzcpx1cd5fsz0xg1282"; depends=[htmltools RJSONIO shiny]; }; + shinyLP = derive2 { name="shinyLP"; version="1.1.0"; sha256="08vc35988pv0kx0kvdl26nkdzcgmi6w4xffmyylan7x59519imkk"; depends=[shiny shinyBS shinythemes]; }; shinyRGL = derive2 { name="shinyRGL"; version="0.1.0"; sha256="07llg1yg5vmsp89jk60ly695zvxky6n06ar77mjxzlyc294akwmy"; depends=[rgl shiny]; }; + shinyTime = derive2 { name="shinyTime"; version="0.2.1"; sha256="0gpa6kypchvvlq71nnlilciclcrhaa488prjz46sddrsxjy09mp7"; depends=[htmltools shiny]; }; shinyTree = derive2 { name="shinyTree"; version="0.2.2"; sha256="08n2s6pppbxn23ijp6vms609p4qwlmfh9g0k5hdfqsqxjrz1nndi"; depends=[shiny]; }; shinybootstrap2 = derive2 { name="shinybootstrap2"; version="0.2.1"; sha256="17634l3swlvgj1sv56nvrpgd6rqv7y7qjq0gygljbrgpwmfj198c"; depends=[htmltools jsonlite shiny]; }; - shinydashboard = derive2 { name="shinydashboard"; version="0.5.1"; sha256="1p417ngxw9bk90kgz6n8f23w360knjdg6kkvrbarf7s91wfc8wcb"; depends=[htmltools shiny]; }; - shinyjs = derive2 { name="shinyjs"; version="0.5.0"; sha256="1p3l58cggf0cpdp7brsqz5ailk8w50d0v8z3zy5rm7351mzj3l07"; depends=[digest htmltools miniUI shiny]; }; - shinystan = derive2 { name="shinystan"; version="2.1.0"; sha256="1z97sjc4414rvxyghl30501bc60dshn8msj8k9wxaz5mby7yafbh"; depends=[DT dygraphs ggplot2 gridExtra gtools markdown reshape2 shiny shinyjs shinythemes threejs xtable xts]; }; - shinythemes = derive2 { name="shinythemes"; version="1.0.1"; sha256="0wv579cxjlnd7wkfqzy2x3qk7d1abql1nhw10rx1c4c808vsylkw"; depends=[shiny]; }; + shinydashboard = derive2 { name="shinydashboard"; version="0.5.3"; sha256="0anw22qxbis69zm0ls6alsc3ann27hvgs5mv1wvr4ppk7q8cg4l2"; depends=[htmltools shiny]; }; + shinyjs = derive2 { name="shinyjs"; version="0.9"; sha256="1hh9djpcq80srxxy6ysy3pnwiyc5mx1xmhvs0jacbr3cszq1m6kk"; depends=[digest htmltools jsonlite miniUI shiny]; }; + shinystan = derive2 { name="shinystan"; version="2.3.0"; sha256="1xianpv9s4xjv5lsnagcx7gsnba38psv9kgik9z6k7z9g7bg91rs"; depends=[bayesplot colourpicker DT dygraphs ggplot2 gridExtra gtools markdown reshape2 rsconnect rstan shiny shinyjs shinythemes threejs xtable xts]; }; + shinythemes = derive2 { name="shinythemes"; version="1.1.1"; sha256="0i220y051dq763idh1j5zhpb5cpv3jr11jd9akmry9aadyys5pz6"; depends=[shiny]; }; + shinytoastr = derive2 { name="shinytoastr"; version="2.1.1"; sha256="01j2z4gf1wxblrjayykwxdr2s8394i7k930x8g4hmrj7c9pv264n"; depends=[shiny]; }; shock = derive2 { name="shock"; version="1.0"; sha256="11m52al591xjznl62q1waxsg5m1a1afmd0yqcc5zsjlrplykg4lp"; depends=[capushe GGMselect glasso igraph mvtnorm]; }; shopifyr = derive2 { name="shopifyr"; version="0.28"; sha256="1ypqgiqimdwj9fjy9ykk42rnkipb4cvdxy5m9z9jklvk5a7cgrml"; depends=[R6 RCurl RJSONIO]; }; - shotGroups = derive2 { name="shotGroups"; version="0.7"; sha256="0zvwf87xm9dmi10i700nx8qgg314iy6dwd5kv0ziinprma7ivvjv"; depends=[boot coin CompQuadForm KernSmooth robustbase]; }; - showtext = derive2 { name="showtext"; version="0.4-4"; sha256="14xvbvch354dwbhr36ih4av9b7f3z2zw2bsbnn5fxxh15lm26wz3"; depends=[showtextdb sysfonts]; }; + shotGroups = derive2 { name="shotGroups"; version="0.7.3"; sha256="0h6c4fz2b4gpbfqykic6apflvp11bcafqm87gzl0zv8b03ydylxk"; depends=[boot coin CompQuadForm KernSmooth robustbase]; }; + showtext = derive2 { name="showtext"; version="0.4-6"; sha256="17qx9zlmp440p4a9mkba89k1rdx11hdl5px33m1766hlsv1x7sf8"; depends=[showtextdb sysfonts]; }; showtextdb = derive2 { name="showtextdb"; version="1.0"; sha256="14iv5nyc9wszy1yhbggk7zs042kv10lwk92pn9751hfws53yq6hf"; depends=[sysfonts]; }; shp2graph = derive2 { name="shp2graph"; version="0-2"; sha256="09gbb7f9h3q2p56dwb2813mr36115ah70szq47jimpymzkd2x08m"; depends=[igraph maptools]; }; shrink = derive2 { name="shrink"; version="1.2.1"; sha256="0pd967wsys8fd7gyvr9y08km118yamfk5c1a1i2k8nr2ifpqmy0w"; depends=[MASS mfp rms survival]; }; - shuffle = derive2 { name="shuffle"; version="1.0"; sha256="037i45mfys1nr9sqmmsfb2yd3ba3aa22hc701f5j2zp8jx57qn3k"; depends=[]; }; + shuffle = derive2 { name="shuffle"; version="1.0.1"; sha256="0aqb11h340picx7z2jg3k46l3pr6fkknlpyzc0z89hhrc90pss48"; depends=[]; }; siRSM = derive2 { name="siRSM"; version="1.1"; sha256="0fx6bfb5c8hdlgjxddwhhzr09ls53kfgn36hjk9zi5z8m14a7wbn"; depends=[doSNOW foreach MASS rsm]; }; siar = derive2 { name="siar"; version="4.2"; sha256="1c4z72jr81dzkp9xqyrrkwjsalvvksl67pnbaadkc52v84fhzx3r"; depends=[bayesm coda hdrcde MASS mnormt spatstat]; }; sideChannelAttack = derive2 { name="sideChannelAttack"; version="1.0-6"; sha256="1xcsy1h8gc8a4f9nzs7zv8x6v55g1pg8vy1kg64iqxm0gnz2f20l"; depends=[ade4 corpcor infotheo MASS mmap]; }; @@ -7176,71 +8991,89 @@ in with self; { sig = derive2 { name="sig"; version="0.0-5"; sha256="084wwpj5mnmq4k98ijbv23z80sj4axadc7c6hn3917dazsaa6ngn"; depends=[]; }; sigclust = derive2 { name="sigclust"; version="1.1.0"; sha256="0151v7lr4n4yyn93j0s06gzc9jh9xhdgvfw6kvpfy24jl6wdii7g"; depends=[]; }; sigloc = derive2 { name="sigloc"; version="0.0.4"; sha256="13v2dlgsbcsqqm8yxls62i7r3sk8m3c78jv8f9lgdihq5pjnd9zp"; depends=[ellipse nleqslv]; }; + sigmoid = derive2 { name="sigmoid"; version="0.2.0"; sha256="0cp16spja60nv6wpj0zg5b4nkj1dg0d0blhrjm4ki5pz9k7lc0g7"; depends=[]; }; signal = derive2 { name="signal"; version="0.7-6"; sha256="1vsxramz5qd9q9s3vlqzmfdpmwl2rhlb2n904zw6f0fg0xxjfq3b"; depends=[MASS]; }; signalHsmm = derive2 { name="signalHsmm"; version="1.4"; sha256="1plyvx0pdid4zydxjwph6v96c8ilzgn55vcdszkslp3a4s2sns65"; depends=[Rcpp seqinr shiny]; }; signmedian_test = derive2 { name="signmedian.test"; version="1.5.1"; sha256="05n7a4h2bibv2r64cqschzhjnm204m2lm1yrwxvx17cwdp847hkm"; depends=[]; }; + sigora = derive2 { name="sigora"; version="2.0.1"; sha256="1sgjafr2f7carwnvp0vsvp80jn2bzwlkay38ch63qk9gapsh4imh"; depends=[]; }; + sigr = derive2 { name="sigr"; version="0.1.4"; sha256="0lw7l0dsjv0c4fdl8x0prg91qhbi4lvqfaky38j75w9jw8h9gkq4"; depends=[]; }; simFrame = derive2 { name="simFrame"; version="0.5.3"; sha256="154d4k6x074ib813dp42l5l8v81x9bq2c8q0p5mwm63pj0rgf5f3"; depends=[lattice Rcpp]; }; + simLife = derive2 { name="simLife"; version="0.3"; sha256="0bqhixr4zg7mwgxdsjk0h5a82dyfkhiv9xafw43w2bpnmyxywdia"; depends=[splancs unfoldr]; }; simMSM = derive2 { name="simMSM"; version="1.1.41"; sha256="04icijrdc269b4hwbdl3qz2lyxcxx6z63y2wbak1884spn6bzbs8"; depends=[mvna survival]; }; - simPH = derive2 { name="simPH"; version="1.3.5"; sha256="1k2gs8lls287g3zy94h231sf9nljygmb82m4yjc05xglsi8ab0dr"; depends=[data_table dplyr ggplot2 gridExtra lazyeval MASS mgcv quadprog stringr survival]; }; - simPop = derive2 { name="simPop"; version="0.3.0"; sha256="0rxlabgdjcbqldk06lzl81fi35qg6s9dw73h3bbwd7x89cbj5q8x"; depends=[colorspace data_table doParallel e1071 foreach laeken lattice MASS nnet party plyr Rcpp vcd VIM]; }; + simPATHy = derive2 { name="simPATHy"; version="0.2"; sha256="0ai5wmjz8k0glbwkclgg3m3ncsjghja4iys2mn1psn3r8gxk79yc"; depends=[ggm graph gRbase htmlwidgets igraph mvtnorm qpgraph R_utils shiny shinydashboard]; }; + simPH = derive2 { name="simPH"; version="1.3.9"; sha256="0hvg8m0d57x9s8ix7j7v0zdcxxww7bmd2mh8n059da3mph8hf288"; depends=[data_table dplyr ggplot2 gridExtra lazyeval MASS mgcv quadprog stringr survival]; }; + simPop = derive2 { name="simPop"; version="0.6.0"; sha256="0ndcwg3yj0n7wyhgs3n02jr7m4sks9n8bjbcgkzrxkqfg6696b62"; depends=[colorspace data_table doParallel e1071 EnvStats fitdistrplus foreach laeken lattice MASS nnet party plyr ranger Rcpp vcd VIM]; }; simSummary = derive2 { name="simSummary"; version="0.1.0"; sha256="1ay2aq6ajf1rf6d0ag3qghxpwj0f8b3fhpr2k0imzmpbyag1i3gj"; depends=[abind gdata svUnit]; }; simTool = derive2 { name="simTool"; version="1.0.3"; sha256="1x018p5mssrhz2ghs3ly9wss12503h93gl7zk0mqh1bcrzximh0k"; depends=[plyr reshape]; }; simba = derive2 { name="simba"; version="0.3-5"; sha256="14kqxqavacckl5s1518iiwzrmlgbxz1lxy33y8c9qq7xaln41g9h"; depends=[vegan]; }; simboot = derive2 { name="simboot"; version="0.2-5"; sha256="0slznwk8i3z76sxbfd4y5rp28jr6jv4i5ynnckpr10i59ba04wlq"; depends=[boot mvtnorm]; }; - simcausal = derive2 { name="simcausal"; version="0.5.0"; sha256="0aqgz09l3ixhmz8k1cfy6185pybxl5ickvz0d3r7il7izsyrwnmv"; depends=[assertthat data_table igraph Matrix R6 stringr]; }; + simcausal = derive2 { name="simcausal"; version="0.5.3"; sha256="1k0cbnkgd8sn5vjvmpa496yir868xldhcnkynfqdcs4qsfywfrzs"; depends=[assertthat data_table igraph Matrix R6 stringr]; }; simctest = derive2 { name="simctest"; version="2.4.1"; sha256="0v4l3dqhr551kr1kivsndk4ynkiaarp8hp65vgng4q8jm60il98c"; depends=[]; }; simecol = derive2 { name="simecol"; version="0.8-7"; sha256="0p6kmv65k3zy5q4v8casc2cp3c2ckblmycd1y1nnn7z7fnd57g8h"; depends=[deSolve minqa]; }; - simest = derive2 { name="simest"; version="0.2"; sha256="15cgm8nk41fnva2camq26dwb1xy8qyk68v4918xszkj25lxb01m3"; depends=[nnls]; }; + simest = derive2 { name="simest"; version="0.3"; sha256="1bxgrr0sncsi1swmj5l4kqyd2v80py50d5xynv6544r1qnfpwk69"; depends=[nnls]; }; simex = derive2 { name="simex"; version="1.5"; sha256="01706vbmfgcg13w1kq8v5rnk5xggbd1n7fv50c6bvhdyc1dly313"; depends=[]; }; simexaft = derive2 { name="simexaft"; version="1.0.7"; sha256="13w9m35qrrp8kkz4gqp7fg9jv8fs99y19n21bdxsd3f5mlkbvqgl"; depends=[mvtnorm survival]; }; - simmer = derive2 { name="simmer"; version="3.1.2"; sha256="0zxvczxvpi20d4q6vpyiwz4xh5akwlbris5m86nq2s6wzccnmsjb"; depends=[BH magrittr R6 Rcpp]; }; + simmer = derive2 { name="simmer"; version="3.6.0"; sha256="1i7ppj7rf21i5frycmcd9pn51rc702pp3hmyv03cf9rm454v6rc2"; depends=[BH magrittr R6 Rcpp]; }; + simmer_plot = derive2 { name="simmer.plot"; version="0.1.8"; sha256="0r1r88bq4m4qzqyzag3rr67b6cakf4446vdhxqiqc23ky16wl99l"; depends=[DiagrammeR dplyr ggplot2 scales simmer tidyr]; }; simmr = derive2 { name="simmr"; version="0.3"; sha256="18ycrd7qbz7frvd3bgbqaaapslw1jw89fy3np5qyb9sswyk08w9m"; depends=[boot coda compositions ggplot2 MASS reshape2 rjags viridis]; }; simone = derive2 { name="simone"; version="1.0-3"; sha256="1l38xbcf50kjh0k4dc4xsxkjr54jz4s98az99mzcsdarqd6kz9kg"; depends=[mixer]; }; simpleNeural = derive2 { name="simpleNeural"; version="0.1.1"; sha256="0rm6kvz1mppvgcvwsgg3nz6ci37l95ins64g0jh4rw6lfmy0grjc"; depends=[]; }; simpleRCache = derive2 { name="simpleRCache"; version="0.2.2"; sha256="1hbiwk2am56f2vhj5qvajkqwynlch7c857vnpj99497wgy2wxg7z"; depends=[digest]; }; + simpleSetup = derive2 { name="simpleSetup"; version="0.1.0"; sha256="0rbzmixk76b3lgi9m7ijhcl6dha7wbbxfgwdhnp2y338zny6c6rm"; depends=[]; }; simpleboot = derive2 { name="simpleboot"; version="1.1-3"; sha256="1qprjisfflhzg8ll12p3q1zcfdiyc45glic2j9cw9nhx5rb065fk"; depends=[boot]; }; simplegraph = derive2 { name="simplegraph"; version="1.0.0"; sha256="1gcpbljp1fgaprxnmq23izf1h2x3p5dnxlylwqsnlcj50bvm46gq"; depends=[]; }; - simplexreg = derive2 { name="simplexreg"; version="1.1"; sha256="0iyrkynhrkdix27r105wv0yn5yc8cgrf6hlv4byi9mz6y05f9i7p"; depends=[Formula plotrix]; }; + simplexreg = derive2 { name="simplexreg"; version="1.3"; sha256="1zkh00xbddhgz0qn0a5pj12n0hpx4f5kihpfj71x92pmxpzglcxh"; depends=[Formula plotrix]; }; simplr = derive2 { name="simplr"; version="0.1-1"; sha256="14gv2cwygjjfc9yjdrcn68scgyh469kypmf4mqy5p18gsxfj3h1c"; depends=[]; }; - simr = derive2 { name="simr"; version="1.0.1"; sha256="1n7x5q6bwpw7k3bfmc736f37flg5xmiwmaz52w3ayabwljkirbrn"; depends=[binom iterators lme4 plotrix plyr RLRsim stringr]; }; + simputation = derive2 { name="simputation"; version="0.2.1"; sha256="1a0kcwg4jl7xnp9b0hrj2m5mcrvqgxi0283fvw17b11bl7mkh43m"; depends=[gower MASS rpart]; }; + simr = derive2 { name="simr"; version="1.0.2"; sha256="03rbq16x91y79xp1cw8z1b01pv6w0h344g4a9na5xipfm1x97kqf"; depends=[binom car iterators lme4 pbkrtest plotrix plyr RLRsim stringr]; }; simrel = derive2 { name="simrel"; version="1.0-1"; sha256="0905rjqh8c08vyg090h0i7sx89vdryignslldzfz2r5yrszl4ga8"; depends=[FrF2 sfsmisc]; }; simsalapar = derive2 { name="simsalapar"; version="1.0-9"; sha256="0h46acf797lp1hvs8x91nzll3zxiiczfl6vdxxrwizr109jzggcj"; depends=[colorspace gridBase sfsmisc]; }; - simsem = derive2 { name="simsem"; version="0.5-12"; sha256="12zwc7h2rmj0nbrrwd1s70iicf0vs3ld7dn3aq6wda71vgplgc14"; depends=[lavaan]; }; - sinaplot = derive2 { name="sinaplot"; version="0.1.3"; sha256="007f7zqyg48n8v2lwa6ff8cwbvi332cg40fmzlvr3jjms0gsrzbr"; depends=[ggplot2]; }; + simsem = derive2 { name="simsem"; version="0.5-13"; sha256="0v6gbfp4659gbpzc1vffg687c8bcd45ddb7jhd0bgx66m28853kk"; depends=[lavaan]; }; + simstudy = derive2 { name="simstudy"; version="0.1.2"; sha256="08350rd4nd4vckd51n2k4q28p4wi3a366xr2kgrjxr7xpx12m6zw"; depends=[data_table mvnfast Rcpp]; }; + simulator = derive2 { name="simulator"; version="0.2.0"; sha256="18x0c9bf9anbykq9f46fxnnx7g36bh01s4cdmrn7mdygs6ac9c8z"; depends=[magrittr]; }; + sinaplot = derive2 { name="sinaplot"; version="1.0.0"; sha256="1s87ykgad56f7l7janxx1x0y98dycpwk7mflyqxncq46awrd1ai0"; depends=[plyr]; }; siplab = derive2 { name="siplab"; version="1.2"; sha256="0r7gk9qsmbc3ln67cb8p87bq3s2rx6fbavlly1fpzqqv2isf5pq9"; depends=[spatstat]; }; - sirad = derive2 { name="sirad"; version="2.3-1"; sha256="12gnlfbnis5972p4v5ad16srfsfrr0kji40y8jbygcd43f8ka70r"; depends=[raster zoo]; }; - sirt = derive2 { name="sirt"; version="1.10-0"; sha256="0s3bkvxc7liclggwcbmr28smh6lbcp8zd2c4qad6f8sbi30bj4l2"; depends=[CDM coda combinat gtools ic_infer igraph lavaan lavaan_survey MASS Matrix mirt mvtnorm pbivnorm plyr psych Rcpp RcppArmadillo sfsmisc sm survey TAM]; }; - sisVIVE = derive2 { name="sisVIVE"; version="1.2"; sha256="03lnk0p97nf4a8rw8ypy3xfzj4idwm00a0gfrkiwb7xq606sl0vb"; depends=[lars]; }; + sirad = derive2 { name="sirad"; version="2.3-3"; sha256="0vhmk2fmq4797gj6c8803zw1ipmdxfvdfgi2bygzxbn5bqd4da2n"; depends=[raster zoo]; }; + sirt = derive2 { name="sirt"; version="1.14-0"; sha256="1dbv1wg16hd34hhsah0bf4rk3jqrr31rmsysjsbhall6mqlkprxz"; depends=[CDM coda combinat gtools ic_infer igraph lavaan lavaan_survey MASS Matrix MCMCpack mirt mvtnorm pbivnorm plyr psych Rcpp RcppArmadillo sfsmisc sm survey TAM]; }; + sisVIVE = derive2 { name="sisVIVE"; version="1.3"; sha256="17q6dl8wiwf01g6jm93w72jvp1madd0fww1yiazjcbkmz0j3kdbl"; depends=[lars]; }; sisal = derive2 { name="sisal"; version="0.46"; sha256="00szc3l69i0cksxmd0lyrs4p6plf05sl4vxs3nl4gkbja5y4lvpc"; depends=[boot digest lattice mgcv R_matlab R_methodsS3]; }; sisus = derive2 { name="sisus"; version="3.9-13"; sha256="0lz9ww07dvdx6l3k5san8gwq09hycc3mqwpgzmr2ya9z8y27zadr"; depends=[coda gdata gtools MASS moments polyapost rcdd RColorBrewer]; }; - sitar = derive2 { name="sitar"; version="1.0.4"; sha256="1kppy6ryzf0mbdwnxwg1syjbnbymbpldcwxki6h213h7pd1gjbn9"; depends=[nlme quantreg]; }; + sitar = derive2 { name="sitar"; version="1.0.9"; sha256="1yjiqykrx0dm0zkssagv50kyp4wj9b0sjmrpgbn9wzimqdb5ijph"; depends=[nlme quantreg]; }; + sitmo = derive2 { name="sitmo"; version="1.0.0"; sha256="11az1zncpnalp1vkyxz75asqk6jd9wsn6kifjcqigm21kg8wcf7j"; depends=[Rcpp]; }; sitools = derive2 { name="sitools"; version="1.4"; sha256="0c0qnvsv06g6v7hxad96fkp9j641v8472mbphvaxa60k3xc7ackb"; depends=[]; }; + sitree = derive2 { name="sitree"; version="0.1-0"; sha256="00np025vj2ckyp9ikv89fm4mrxgqbgq29870dzq3i071ba7r650z"; depends=[data_table]; }; sivipm = derive2 { name="sivipm"; version="1.1-3"; sha256="1l0j1bi38s09ax4kwikk615lyd074gzg1aa1j2jfmhr3igannm3z"; depends=[seqinr]; }; - sjPlot = derive2 { name="sjPlot"; version="1.9.2"; sha256="15nsaxflpkh5njzn6j0hwsrg1ar0zjjwksvwlm4cf33c3a9zgk9v"; depends=[car dplyr effects ggplot2 lme4 magrittr MASS nlme psych scales sjmisc tidyr]; }; - sjdbc = derive2 { name="sjdbc"; version="1.5.0-71"; sha256="0i9wdfadfcabayq78ilcn6x6y5csazbsgd60vssa2hdff0ncgvk1"; depends=[rJava]; }; - sjmisc = derive2 { name="sjmisc"; version="1.6"; sha256="0h1w4il1bj9kw0lx1hjlz60d1m92d9bhrgwg3sz4arizh88j83mf"; depends=[coin dplyr haven lme4 MASS Matrix nlme stringdist tidyr]; }; - skatMeta = derive2 { name="skatMeta"; version="1.4.3"; sha256="0bknv066ya4yl4hl4y02d9lglq2wkl9c2j1shzg3d64dg4sjvbak"; depends=[CompQuadForm coxme Matrix survival]; }; + sizeMat = derive2 { name="sizeMat"; version="0.2.0"; sha256="10ghh7ch33jjchirsbxmj36ig44zncwcmsy7is5vj4pbmhpbz6gv"; depends=[MASS matrixStats mcmc MCMCpack]; }; + sjPlot = derive2 { name="sjPlot"; version="2.3.0"; sha256="0gljrzlz4kcfam0i79qiapj858h9h7w6asrga6812w093f6k9ivi"; depends=[broom dplyr effects ggplot2 lme4 MASS merTools modelr nlme psych purrr scales sjmisc sjstats tibble tidyr]; }; + sjdbc = derive2 { name="sjdbc"; version="1.6.0"; sha256="17ncgj2s2pjn3w3c1dgxv8g7y17h4p78iic86gsj2ahn0xpsmkcc"; depends=[rJava]; }; + sjmisc = derive2 { name="sjmisc"; version="2.3.0"; sha256="06h13sqh7k7dis5b02zqq41wsr0zrwxxkcaaam9jhmbb9k0nq8s1"; depends=[broom dplyr haven psych purrr stringdist stringr tibble tidyr]; }; + sjstats = derive2 { name="sjstats"; version="0.8.0"; sha256="0kg9g7g0d4cy75qfqa9iqs1wkbc7k4lm3sq6nmaq4x1nlc9hrl0r"; depends=[broom coin dplyr lme4 lmtest MASS Matrix modelr nlme purrr sandwich sjmisc tibble tidyr]; }; skda = derive2 { name="skda"; version="0.1"; sha256="0a6mksr1d0j3pd0kz4jb6yh466gvl4fkrvgvnlmvivpv6b2gqs3q"; depends=[]; }; - skellam = derive2 { name="skellam"; version="0.1.3"; sha256="1w46ri4k8xg07phl7j4cb5b3qndplr027n047wzc15xcjliggg89"; depends=[]; }; + skeleSim = derive2 { name="skeleSim"; version="0.9.5"; sha256="1m0jwr63v989dalchiv90sfpi6g19rj0x2zgp0bgmjpq3xyamykf"; depends=[adegenet ape hierfstat igraph markdown pegas reshape2 rmetasim shiny shinyFiles strataG swfscMisc]; }; + skeletor = derive2 { name="skeletor"; version="1.0.2"; sha256="0xnlhlxdpj1lg7balpwsz5b4d90505al389b288ac81q0wg974rf"; depends=[]; }; + skellam = derive2 { name="skellam"; version="0.2.0"; sha256="0r5wbs5h7xc3k2vjxd4axwnxr9cmwm008fcyj1vyixkg8fa680gx"; depends=[]; }; skewt = derive2 { name="skewt"; version="0.1"; sha256="1xm00zfzjv53cq9drfcx7w2ri5dwsq7kajrk2hc1mvw0b6s4x2ix"; depends=[]; }; - skmeans = derive2 { name="skmeans"; version="0.2-8"; sha256="0g5hyb1zwjp45j4wqbssdr0mw9fr19b6a35bmsf6xsgbf5asqx6w"; depends=[clue cluster slam]; }; + skm = derive2 { name="skm"; version="0.1.5.4"; sha256="06g3bdncq2r56d8k3dr87gqnibypbsps0gj4jxkw9q1sq1yaff3v"; depends=[data_table magrittr plyr Rcpp RcppArmadillo RcppParallel]; }; + skmeans = derive2 { name="skmeans"; version="0.2-10"; sha256="014di97bcrx7lkvpixcy7idgfxaay4sjn7xvvj683a45pkk58h5c"; depends=[clue cluster slam]; }; sla = derive2 { name="sla"; version="0.1"; sha256="0fr5n65ppwsh9z7a6rma9ak0bl8x3nz7v25lij7wb5nrf3sl74yb"; depends=[]; }; - slackr = derive2 { name="slackr"; version="1.2"; sha256="1ymj3x52wyp0mp41xnnycg0vhdmv8whimwk1hzfsqr30pccnvn9j"; depends=[data_table ggplot2 httr jsonlite]; }; - slam = derive2 { name="slam"; version="0.1-32"; sha256="000636dwj4kmj5w1w5s6bqixh78m7262y3fgizj7rfhcnc2gz7ad"; depends=[]; }; - sld = derive2 { name="sld"; version="0.3"; sha256="18xj57v9gg78d894cr1h6wp10i05hrnmwhmq6yh6211kdyj9ljp1"; depends=[lmom]; }; + slackr = derive2 { name="slackr"; version="1.4.2"; sha256="1vm2h5fzcss3xx1annx68wrvv6c0s6h2ci0bipxmdl9amdaqw85w"; depends=[dplyr ggplot2 httr jsonlite]; }; + slam = derive2 { name="slam"; version="0.1-40"; sha256="1di5qs8sz4bh47653kmjcdbdxir03k3nin8mh817ga9af7aa3b5g"; depends=[]; }; + sld = derive2 { name="sld"; version="0.3.2"; sha256="0za5pw7ki419ni9pqqzddb10d16nvv5rh5jrkl4f77j0ps2ajylp"; depends=[lmom]; }; sleekts = derive2 { name="sleekts"; version="1.0.2"; sha256="0syk244xrsv8hz5sxm7wizk0kyn1nc6z4c63c8xn57fz130zj75k"; depends=[]; }; slfm = derive2 { name="slfm"; version="0.2.2"; sha256="01n9y6kyl7z1ynckp2hkrv2yl9jf30zcbbi3sx9jrcha557fg1cf"; depends=[coda lattice Rcpp RcppArmadillo]; }; - slp = derive2 { name="slp"; version="1.0-3"; sha256="09jyrp6y3rigy043d8s5i7nh89pgpvn3cv51mr729c9ccr6jdjb1"; depends=[mgcv]; }; + slim = derive2 { name="slim"; version="0.1.0"; sha256="1d39hcsb6qxi36x7fkl67vy7r8n7ij275z7jnrb2n3pjnqkzjmzi"; depends=[data_table MASS]; }; + slp = derive2 { name="slp"; version="1.0-5"; sha256="0i9iv0s1wdp9cyzr8qixh6c7qvrj025vll13gyf8dfbidrp6hryl"; depends=[mgcv]; }; sm = derive2 { name="sm"; version="2.2-5.4"; sha256="0hnq5s2fv94gaj0nyqc1vjdjd64vsp9z23nqa8hxvjcaf996rwj9"; depends=[]; }; - smaa = derive2 { name="smaa"; version="0.2-4"; sha256="1rp0hib79x1rf2v5h1d2gp6ixq7r8v33qy5bz5sfphi94xwasm7l"; depends=[]; }; + smaa = derive2 { name="smaa"; version="0.2-5"; sha256="1mwahjgslk82f8bl6qcjs1yadhbnqrxxhvkffkgc2fv3s6lh5d9m"; depends=[]; }; smac = derive2 { name="smac"; version="1.0"; sha256="1inn7i5k0q5vln24kazh3gl3szf6lxwnjr2rw70jcyn9dr9iy952"; depends=[]; }; - smacof = derive2 { name="smacof"; version="1.8-10"; sha256="1wb9rnj39lxa1mcrsgniyrysdzspgcspql3bfaiqsyyqybbp0z1b"; depends=[colorspace Hmisc MASS nnls polynom]; }; + smacof = derive2 { name="smacof"; version="1.8-13"; sha256="0b9kf8z1ll0ak5b9ms2pkv7fl9qhc1nb5cxaarfjc2xi7zkyanyi"; depends=[colorspace Hmisc MASS nnls polynom weights]; }; smacpod = derive2 { name="smacpod"; version="1.4.1"; sha256="17f28nax92nkfgs972gqcjnnz6sw4p8n36rrhx00dy19vr569kp5"; depends=[plotrix SpatialTools spatstat]; }; smallarea = derive2 { name="smallarea"; version="0.1"; sha256="0jcv0xbh8v4g6zxxs4yyd0divwzk9d2w7g01r4s65khxvy3av7yx"; depends=[MASS]; }; - smam = derive2 { name="smam"; version="0.2-2"; sha256="1p6bzk4b9kpmfs4nxmcgc46hgdpldqg0pzpc0zhvs187z2nrfw75"; depends=[Matrix]; }; + smam = derive2 { name="smam"; version="0.3-0"; sha256="1sdr0ki2y9smiwfglgh97kj6y0n1z3blyyxk823xp3467byk1rnb"; depends=[Matrix numDeriv Rcpp]; }; + smapr = derive2 { name="smapr"; version="0.1.0"; sha256="01nhmr40vivshysq6fjixjaddr7nmimlyim26qf6knvphpl6hrdd"; depends=[httr rappdirs raster rgdal rhdf5 rvest xml2]; }; smart = derive2 { name="smart"; version="1.0.1"; sha256="0ki3qn71zrw0nyv395qijcwahnxyv1p21j8x6cxr9spah2wzz8lb"; depends=[elasticnet gplots gtools igraph Matrix pcaPP PMA]; }; smatr = derive2 { name="smatr"; version="3.4-3"; sha256="0iiazln4albj7k5w67slvyn98cqg4f6k409mml0n1pvlkki0h7gy"; depends=[plyr]; }; - smbinning = derive2 { name="smbinning"; version="0.2"; sha256="1zps1gdn5s7ynbkxmxp5s3xvzixdkcrfyvz5qrv77s4825lkj57x"; depends=[Formula gsubfn partykit sqldf]; }; + smbinning = derive2 { name="smbinning"; version="0.3"; sha256="0993lnp7iks39z4mshh4gdrbvig6pnsc2jag58cbqfh40ignx748"; depends=[Formula gsubfn partykit sqldf]; }; smcUtils = derive2 { name="smcUtils"; version="0.2.2"; sha256="0d1kmg386j0zrpp8vgxjwvpf1i25l86xrh82767xkp0n9qj8srwq"; depends=[]; }; smcfcs = derive2 { name="smcfcs"; version="1.2.1"; sha256="1v143di0y8c0dcsjham1dmsyh1k0583nhw4qzlignxpg8nf6n4xc"; depends=[MASS survival VGAM]; }; smco = derive2 { name="smco"; version="0.1"; sha256="1sj3y1x6pc32cwzyhn9gaxs964xh5xl4vw08hsa8kfcxhh2r0s99"; depends=[]; }; @@ -7253,320 +9086,403 @@ in with self; { smfsb = derive2 { name="smfsb"; version="1.1"; sha256="0khd23b6k9zgxz2x6g6c6k2g32mbpli32izdq6fgk1a990kdsp6j"; depends=[]; }; smint = derive2 { name="smint"; version="0.4.2"; sha256="0sfk8r4jzvfs63z1vka280hdmhcbcrspr9zxwc5az9hkj65g1n0f"; depends=[lattice Matrix]; }; smirnov = derive2 { name="smirnov"; version="1.0-1"; sha256="09mpb45wj8rfi6n6822h4c335xp2pl0xsyxgin1bkfw97yjcvrgk"; depends=[]; }; - smnet = derive2 { name="smnet"; version="2.0"; sha256="0jd574cjkylcrlnlnw859f4vwadi1v955m2lb5z3w3gdpv0lbx3p"; depends=[DBI igraph RSQLite spam SSN]; }; - smoof = derive2 { name="smoof"; version="1.3"; sha256="0b8hs12xvqkr5kkzlbc8rq4zmm6ndmzxhm07zzapsnqckp55g8v7"; depends=[BBmisc checkmate ggplot2 mco ParamHelpers plot3D RColorBrewer Rcpp RcppArmadillo]; }; + smnet = derive2 { name="smnet"; version="2.1"; sha256="1jqcgm098kdsrgwrpjry0l6rg8ql7cigxk54svs3170x1fvxa3il"; depends=[DBI RSQLite spam SSN]; }; + smoof = derive2 { name="smoof"; version="1.4"; sha256="18li9l62lmpsva0whw6d5wr46w90w3z70wywiy785sla00g06sp2"; depends=[BBmisc checkmate ggplot2 mco ParamHelpers plot3D plotly RColorBrewer Rcpp RcppArmadillo]; }; + smooth = derive2 { name="smooth"; version="1.6.3"; sha256="0b7gdy0bjnaqn4djflxzkjx036jqn8izlc344yvsvybw5gysavl8"; depends=[nloptr Rcpp RcppArmadillo zoo]; }; + smoothAPC = derive2 { name="smoothAPC"; version="0.1"; sha256="06lpjp408ggj27yw6mw7f96kxly7r8kzikbsdp0y1gzig1qq8nbs"; depends=[colorspace lmtest quantreg rgl SparseM]; }; smoothHR = derive2 { name="smoothHR"; version="1.0.2"; sha256="0l33xg3p9pyfrp4rhavz8m1jakk4wr8i14g6jjiizb03rpxdpzqy"; depends=[survival]; }; smoothSurv = derive2 { name="smoothSurv"; version="1.6"; sha256="1s25gpih0nh8waw4r3iw53n3rc44mlzixkh4i2cykbg5rdrs8pnf"; depends=[survival]; }; smoother = derive2 { name="smoother"; version="1.1"; sha256="0nqr1bvlr5bnasqg74zmknjjl4x28kla9h5cxpga3kq5z215pdci"; depends=[TTR]; }; smoothie = derive2 { name="smoothie"; version="1.0-1"; sha256="12p4ig8fbmlsby5jjd3d27njv8j7aiwx0m2n1nmgvjj0n330s1kj"; depends=[]; }; smoothmest = derive2 { name="smoothmest"; version="0.1-2"; sha256="14cri1b6ha8w4h8m26b3d7qip211wfv1sywgdxw3a6vqgc65hmk5"; depends=[MASS]; }; - smoothtail = derive2 { name="smoothtail"; version="2.0.4"; sha256="0wbz9r9a7a3pjkdrsxhkjfm2qrbz4jrpsx4s1vm3kz7czkh55yg7"; depends=[logcondens]; }; + smoothtail = derive2 { name="smoothtail"; version="2.0.5"; sha256="1sqkwniz9m03k23nba9ndmdm0g03mdshzm8risr6wz98jcqjilrk"; depends=[logcondens]; }; + smotefamily = derive2 { name="smotefamily"; version="1.0"; sha256="0jh8fmhn8c9v3c4lb3nniiagy1d4shfix4fr7jpyw4q69mh0vn0h"; depends=[]; }; sms = derive2 { name="sms"; version="2.3.1"; sha256="0vr5jy8bxbczaqr9kg0fnanxhv9nj51yzgacrb63k33cs85p981m"; depends=[doParallel foreach iterators]; }; smss = derive2 { name="smss"; version="1.0-2"; sha256="04lgfdcvnzpnpplyl62fy7slyiy8wkqpjjrzmclgqis3c9zkkncp"; depends=[]; }; - sn = derive2 { name="sn"; version="1.3-0"; sha256="00q58zssf32581m8ni5qazqy3wq36p4fya985ibn1607w76w8vwj"; depends=[mnormt numDeriv]; }; - sna = derive2 { name="sna"; version="2.3-2"; sha256="1dmdv1bi22gg4qdrjkdzdc51qsbb2bg4hn47b50lxnrywdj1b5jy"; depends=[]; }; + sn = derive2 { name="sn"; version="1.5-0"; sha256="0fh7xjsfd2x8d9lbnss7raldh24b72b3pvcv7zqa1qprzg7zfr01"; depends=[mnormt numDeriv]; }; + sna = derive2 { name="sna"; version="2.4"; sha256="1ks8819qvpdfansfqj9p32s1rhvl26frvbi78m4rx1wd1qcv74i2"; depends=[network statnet_common]; }; snapshot = derive2 { name="snapshot"; version="0.1.2"; sha256="0cif1ybxxjpyp3spnh98qpyw1i5sgi1jlafcbcldbqhsdzfz4q10"; depends=[]; }; - snht = derive2 { name="snht"; version="1.0.3"; sha256="1yc4c9liaali0p6k5m30l0lavbcc0wdf0wrmxwcvsh1rzc16p8iv"; depends=[ggplot2 gridExtra mgcv mvtnorm plyr reshape2 zoo]; }; + snht = derive2 { name="snht"; version="1.0.4"; sha256="01gdqicvazfd27f992j4ngv60sqywwplilqxwrsw21wi7y7c6cfv"; depends=[ggplot2 gridExtra mgcv plyr reshape2 zoo]; }; snipEM = derive2 { name="snipEM"; version="1.0"; sha256="0f98c3ycl0g0l3sgjgk7xrjp6ss7n8zzlyzvpcb6agc60cnw3w03"; depends=[GSE MASS mvtnorm Rcpp RcppArmadillo]; }; snn = derive2 { name="snn"; version="1.1"; sha256="0yywn3v1iz9xizwli3gmzprkx66b5a813mbp8hq2vsj8n4lfj8r5"; depends=[]; }; - snow = derive2 { name="snow"; version="0.4-1"; sha256="19r2yq8aqw99vwyx81p6ay4afsfqffal1wzvizk3dj882s2n4j8w"; depends=[]; }; + snow = derive2 { name="snow"; version="0.4-2"; sha256="1mxbrkpnmq32x4wd0194d541661yvfrrjlr3lsf7qq53ms3h21zf"; depends=[]; }; snowFT = derive2 { name="snowFT"; version="1.4-0"; sha256="0gw2kn80jh1a6sg6ni9kj6ikvyq29c9dmx52k9m6gzcfpa7l0qbk"; depends=[rlecuyer snow]; }; - snowboot = derive2 { name="snowboot"; version="0.5.0"; sha256="1fwvgqx5d54libaf13w9szbh471zi0krc03knp0sz99j0i6nwy20"; depends=[igraph VGAM]; }; + snowboot = derive2 { name="snowboot"; version="0.5.2"; sha256="07mly89x9mj5cvpmi45xmlr4d1l1d2fdcagmniviqqqhmllc50pi"; depends=[igraph Rcpp VGAM]; }; snowfall = derive2 { name="snowfall"; version="1.84-6.1"; sha256="13941rlw1jsdjsndp1plzj1cq5aqravizkrqn6l25r9im7rnsi2w"; depends=[snow]; }; snp_plotter = derive2 { name="snp.plotter"; version="0.5.1"; sha256="16apsqvkah5l0d5qcwp3lq2jspkb6n62wzr0wskmj84jblx483vv"; depends=[genetics]; }; snpEnrichment = derive2 { name="snpEnrichment"; version="1.7.0"; sha256="1lja1n26nr8lgbca2kraryv933jwa2w3h41appzylflf0w3liz9y"; depends=[ggplot2 snpStats]; }; snpRF = derive2 { name="snpRF"; version="0.4"; sha256="1amxc4jprrc6n5w5h9jm2as025gqdqkla2asz7x97sjdnnj9kzzn"; depends=[]; }; snpStatsWriter = derive2 { name="snpStatsWriter"; version="1.5-6"; sha256="04qhng888yih8gc7yd6rrxvvqf98x3c2xxz22gkwqx59waqd4jlq"; depends=[colorspace snpStats]; }; snpar = derive2 { name="snpar"; version="1.0"; sha256="0c9myg748jm7khqs8yhg2glxgar1wcf6gyg0xwbmw0qc41myzfnq"; depends=[]; }; - snplist = derive2 { name="snplist"; version="0.15"; sha256="1xak7j6cbp8wapa99v38nzlhdc31ywfqjn4a7s9ibh2nb0plbjla"; depends=[biomaRt DBI R_utils Rcpp RSQLite]; }; - sns = derive2 { name="sns"; version="1.1.0"; sha256="1pppf1h39kv8jjngkcrq091ldzz3knjgcn81gfg7y54yndb2mapr"; depends=[coda mvtnorm numDeriv]; }; + snplist = derive2 { name="snplist"; version="0.17"; sha256="0h419r4b62wdf63z12ai1n9zd3n36l9vgrbvlg1m72bbzrj5k8yz"; depends=[biomaRt DBI R_utils Rcpp RSQLite]; }; + sns = derive2 { name="sns"; version="1.1.2"; sha256="132zd57xb2y0nshw4lakf49r2mvvkv7j32f7l7hqrh91mw7wyqpr"; depends=[coda mvtnorm numDeriv]; }; soc_ca = derive2 { name="soc.ca"; version="0.7.3"; sha256="0z3phmvgwd3s6swfaywq851my12a2n48i6k26vhggc6pf9d28phl"; depends=[ellipse ggplot2 ggrepel gridExtra reshape2 shiny]; }; sodavis = derive2 { name="sodavis"; version="0.1"; sha256="1cci7aq2yqxb97ah5nycmhvg3d47fsicdgmgnw4yz88y61b3ndll"; depends=[MASS nnet]; }; - sodium = derive2 { name="sodium"; version="0.2"; sha256="0y8piyjp09b2d9b3w7csikxrrf9aa8rdyi9awd73sxh9dj8l4452"; depends=[]; }; + sodium = derive2 { name="sodium"; version="0.4"; sha256="09xfla0227dx3354nm0pgkwa6322ifnxydxwmlc25s1vb7mjkk1s"; depends=[]; }; + sofa = derive2 { name="sofa"; version="0.2.0"; sha256="0jjc3r25qprxrhwwzx4b70i51v8gygxwx3x9d1zydx9hw1plk0mb"; depends=[httr jsonlite mime R6]; }; softImpute = derive2 { name="softImpute"; version="1.4"; sha256="07cxbzkl08q58m1455i139952rmryjlic4s2f2hscl5zxxmfdxcq"; depends=[Matrix]; }; - softclassval = derive2 { name="softclassval"; version="1.0-20150416"; sha256="1zrf0nmyy4pfs4dzardghzznw1ahl21w4nykfh2pp8il4dpi21fs"; depends=[arrayhelpers svUnit]; }; + softclassval = derive2 { name="softclassval"; version="1.0-20160527"; sha256="1f5qj5sajy3dg0mgss6f9w6v5a2prcypld9jcv457bd4n4a409kr"; depends=[arrayhelpers svUnit]; }; + softmaxreg = derive2 { name="softmaxreg"; version="1.2"; sha256="0y1r4n83sv2744lpli65aip0c0cq823asb8gw9yy9yjjc9sbyr9s"; depends=[]; }; soil_spec = derive2 { name="soil.spec"; version="2.1.4"; sha256="129iqr6fdvlchq56jmy34s6qc2j5fcfir6pa5as5prw0djyvbdv0"; depends=[GSIF hexView KernSmooth pls sp wavelets]; }; - soilDB = derive2 { name="soilDB"; version="1.7"; sha256="1wyawqwab4y3xg6bz7180xflxrwzr27bgsjnni7lpsjsa65mqid1"; depends=[aqp Hmisc plyr reshape sp XML]; }; + soilDB = derive2 { name="soilDB"; version="1.8-7"; sha256="0v0f9yngqjsagk5dw734aigwhld7fpadj6521bdk49j74ha0girr"; depends=[aqp Hmisc plyr raster reshape2 sp XML]; }; soilphysics = derive2 { name="soilphysics"; version="3.0"; sha256="1b6wzdb63qq0h1aaw08i2qg7410997i2cszr012g5f4dnmrwamln"; depends=[boot MASS rpanel tkrplot]; }; soilprofile = derive2 { name="soilprofile"; version="1.0"; sha256="0sdfg6m2m6rb11hj017jx2lzcgk6llb01994x749s0qhzxmvx9mb"; depends=[aqp lattice munsell splancs]; }; - soiltexture = derive2 { name="soiltexture"; version="1.3.3"; sha256="1a0j10f6mxwrslqd4fvc1nqvsh47ly1nyhc6l0qq1iz6ffqd37mx"; depends=[MASS sp]; }; + soiltexture = derive2 { name="soiltexture"; version="1.4.1"; sha256="1rvrji3xrs6smxcgggl6phnbx595wl1s2d8djnvzfca20k9q6a1q"; depends=[MASS sp]; }; soilwater = derive2 { name="soilwater"; version="1.0.2"; sha256="0rkyh7rcaapp1bxih88ivbaqnrig9jy32694jbg8z04b115hmdpm"; depends=[]; }; - solaR = derive2 { name="solaR"; version="0.41"; sha256="003f8dka0jqlfshzc3d4z9frq5jb5nq6sw3sm44x7rj79w3ynpyg"; depends=[lattice latticeExtra RColorBrewer zoo]; }; + solaR = derive2 { name="solaR"; version="0.44"; sha256="1waxi2zfns4dh1vpsl3khbgaw07icp4f1ax9l0pry9qipmk0nk3k"; depends=[lattice latticeExtra RColorBrewer zoo]; }; solarPos = derive2 { name="solarPos"; version="1.0"; sha256="0004da7vqpq14q5lhs8vyvjl99j8gzxd5wrlw5d1vwfns3ica0q5"; depends=[]; }; solarius = derive2 { name="solarius"; version="0.3.0.2"; sha256="17c765nxq81xshyyl4lfhqjmgvmhn9xyzc6x4qd33wvhh4148f38"; depends=[data_table ggplot2 plyr]; }; solidearthtide = derive2 { name="solidearthtide"; version="1.0.2"; sha256="0274f7vyjymx6hd7ik68hznip57ni4cxp1bw7z91v1jzp3ch17rv"; depends=[]; }; solr = derive2 { name="solr"; version="0.1.6"; sha256="0hlysi1yw4l98dcb1shznzrgia9pqzfj0p1hmnfz5gz2j64lf4h4"; depends=[assertthat httr plyr rjson XML]; }; - solrium = derive2 { name="solrium"; version="0.3.0"; sha256="0y70qkj9wyrvfc8a9c1936ibbjcpic2wib2a2jc094cigf6wgz5r"; depends=[dplyr httr jsonlite plyr XML]; }; - som = derive2 { name="som"; version="0.3-5"; sha256="01xsysmqj0zhzifqpwcrs0mflh56ndv4q3nm5n5imx7wmzx2lrzp"; depends=[]; }; + solrium = derive2 { name="solrium"; version="0.4.0"; sha256="1jjvwwgyq335mhc4pff2l604x1k2260zwxl6k6k9lfzgcgqylbbw"; depends=[dplyr httr jsonlite plyr tibble xml2]; }; + solvebio = derive2 { name="solvebio"; version="0.3.0"; sha256="1y3raw38888jii2c4x1mvdwscyss8qc9fpyl96y0hpmxj4yg1d4l"; depends=[httr jsonlite]; }; + som = derive2 { name="som"; version="0.3-5.1"; sha256="1fbza1jxvwrkf5x3inkj36vshhkn7mz0ajqlxalbfmk6ngjw1x56"; depends=[]; }; + som_nn = derive2 { name="som.nn"; version="1.0.3"; sha256="1viyw7gyfglnpqxamzqxsph876006bx0hbkjb8psi3v71wi014i2"; depends=[class hexbin kohonen som]; }; soma = derive2 { name="soma"; version="1.1.1"; sha256="1mc1yr9sq9h2z60v40aqmil0xswj5hgxfdh4racq297qw3a97my4"; depends=[reportr]; }; someKfwer = derive2 { name="someKfwer"; version="1.2"; sha256="0widny5l04ja91fy16x4giwrabwqhx0fs3yl48pv9xh4zj6sx563"; depends=[]; }; someMTP = derive2 { name="someMTP"; version="1.4.1"; sha256="19bsn8rny1vv9343bvk8xzhh82sskl0zg0f5r59g9k812q5llchn"; depends=[]; }; somebm = derive2 { name="somebm"; version="0.1"; sha256="1iwwc94k6znh4d3bbjnvwp4chc4wg0iy4v2f99cs4jasrsimb4p8"; depends=[]; }; - sommer = derive2 { name="sommer"; version="1.3"; sha256="06rzsq1f3s4kpsyx7dl1459r4b5h1nqp085f8z3m0arkn7qpv7jk"; depends=[MASS Matrix matrixcalc plotrix RColorBrewer]; }; + sommer = derive2 { name="sommer"; version="2.5"; sha256="02a2j43nppzpbh0zqkq79yqys79jsmwql7nsijxlz27b847wf3pz"; depends=[MASS Matrix]; }; somplot = derive2 { name="somplot"; version="1.6.4"; sha256="06c8p2lqz3yxmxdl7ji8a3czvxnsbl7bwyiig76pkwc3a5qqfbb9"; depends=[hexbin]; }; + sonar = derive2 { name="sonar"; version="1.0.2"; sha256="1f0f5iqi3y9vnxyym14nm8dqxw0vcpnxmvvkx4sm612i4fclg1f9"; depends=[]; }; sonicLength = derive2 { name="sonicLength"; version="1.4.4"; sha256="1v46xzx3jxxxs2biyrq6xbv2lhpz1i95la93hj6dl4jfyikmx0im"; depends=[]; }; + sonify = derive2 { name="sonify"; version="0.0-1"; sha256="1wkqqgf8fhhaz1dmri2zzr8cdwmx3cgrxbprrz3yily5r1m17d15"; depends=[tuneR]; }; soobench = derive2 { name="soobench"; version="1.0-73"; sha256="1y2r061pd4kr0kdgp8db3qy2aj07jdiyvy2py4fmwg6b8pcf9y0l"; depends=[]; }; - soql = derive2 { name="soql"; version="0.1"; sha256="0i6vawsdbnbxsxh5la1yr895a21sgp02fr1nvc7mawfv54and7x0"; depends=[]; }; + sophisthse = derive2 { name="sophisthse"; version="0.7.0"; sha256="08vr5y5cvn2q7410krg7620cqv7jmprh96bv43yhh3mk6ixd21dl"; depends=[dplyr RCurl stringr XML zoo]; }; + soql = derive2 { name="soql"; version="0.1.1"; sha256="12wvbxy9xx140b7mga4ma7hkg4q6kv549gkq15fnf4dn8q43x8nf"; depends=[]; }; sortinghat = derive2 { name="sortinghat"; version="0.1"; sha256="1wrxwhdp3gj1ra0rgldnmc0w019bnjb6z9j20c5p1ab09x4dmlny"; depends=[bdsmatrix MASS mvtnorm]; }; sorvi = derive2 { name="sorvi"; version="0.7.26"; sha256="19lfrc4bdiljs437w3a2bpf7abnkv0934dh929bbj2w1w8rzghjn"; depends=[dplyr ggplot2 RColorBrewer reshape2]; }; - sos = derive2 { name="sos"; version="1.3-8"; sha256="0vcgq8hpgdnlmkxc7qh1jqigr0gvm9x3w4ijbhma7x4i5fx3c2il"; depends=[brew]; }; + sos = derive2 { name="sos"; version="1.4-1"; sha256="13swys0bzcxsbr4vg0svs6ans7jdyphcyjix70brmmk6l309y8c0"; depends=[brew]; }; sos4R = derive2 { name="sos4R"; version="0.2-11"; sha256="0r4lficx8wr0bsd510z4cp6la32xf928rsiznbywpxghnypsrcgg"; depends=[RCurl sp XML]; }; sotkanet = derive2 { name="sotkanet"; version="0.9.21"; sha256="0x3dg38i2naf270qjc7dzmvf32ziihsa6m8yv1wh0l7sbk78h7cv"; depends=[RCurl rjson]; }; - soundecology = derive2 { name="soundecology"; version="1.3.1"; sha256="07ncas8rn55pfqgj66qdwp28wh1v9yb8rkr36anc55a6svqx6g89"; depends=[ineq oce pracma seewave tuneR vegan]; }; + sound = derive2 { name="sound"; version="1.4.4"; sha256="1mxwcr978k11p0dznv1gbvb894nixkl4gvhgj015gcl1s63ar5n4"; depends=[]; }; + soundecology = derive2 { name="soundecology"; version="1.3.2"; sha256="1ig04hdxwailsp4lv5y9q73x7vb6hl4dw9zlb05gbccvid5vmdsh"; depends=[ineq oce pracma seewave tuneR vegan]; }; source_gist = derive2 { name="source.gist"; version="1.0.0"; sha256="03bv0l4ccz9p41cjw18wlz081vbjxzfgq3imlhq3pgy9jdwcd8fp"; depends=[RCurl rjson]; }; - sourcetools = derive2 { name="sourcetools"; version="0.1.2"; sha256="03jzag3xd68vp0d3mh5wc6ihx6710wrprf5952h1lannj6zj4cks"; depends=[]; }; - sp = derive2 { name="sp"; version="1.2-2"; sha256="0104xibkj78522rg0h2wkckfgzswxngqkpzi6vfpjm60c8n6m872"; depends=[lattice]; }; + sourceR = derive2 { name="sourceR"; version="1.0.0"; sha256="118v608cimphsm5p84f1j1i3s6yv0xa7qfqrd13j59pvzbfbplka"; depends=[cluster dplyr gplots gtools hashmap R6 SPIn uuid]; }; + sourcetools = derive2 { name="sourcetools"; version="0.1.5"; sha256="0jx6kslygfqaic3cmjwag3dy98q1a2dw20cz7z8agsknmmbk6dy2"; depends=[]; }; + sp = derive2 { name="sp"; version="1.2-4"; sha256="0crba3j00mb2xv2yk60rpa57gn97xq4ql3a6p9cjzqjxzv2cknk2"; depends=[lattice]; }; sp23design = derive2 { name="sp23design"; version="0.9"; sha256="1ihvcld19cxflq2h93m9k9yaidhwixvbn46fqqc1p3wxzplmh8bs"; depends=[mvtnorm survival]; }; + sp500SlidingWindow = derive2 { name="sp500SlidingWindow"; version="0.1.0"; sha256="0m4fg7vwscm1575zq7s8sycr742lbwwhcr7s4gm4vcawz9sfvhkl"; depends=[dplyr FinCal gdata lubridate magrittr]; }; + spAddins = derive2 { name="spAddins"; version="0.1.7"; sha256="1ci246770j40zzmsjwjqwkwi6b2w5qwb0n4f4wah5rjf6zjwkd5r"; depends=[rstudioapi]; }; spBayes = derive2 { name="spBayes"; version="0.3-9"; sha256="1zdyz5jqbixwj59q9f1x8f3knz0jwdfl0abj0w6cxrllkb38yg10"; depends=[abind coda Formula magic]; }; - spBayesSurv = derive2 { name="spBayesSurv"; version="1.0.3"; sha256="1vglfqqk4pg8kc6jnnw7br2lvwmz7szcpfqms95ij3bmawhazhrw"; depends=[coda Rcpp RcppArmadillo survival]; }; - spMC = derive2 { name="spMC"; version="0.3.6"; sha256="0h71m55jmv80kx5ccsrpsakrh4qw5f3kx2qizwi10jlybwggqv0m"; depends=[]; }; + spBayesSurv = derive2 { name="spBayesSurv"; version="1.0.6"; sha256="1k9d8saab2isj60z5kffb7i8f1ymp7327m15gpinw0wv1m9wn11p"; depends=[coda fields MASS Rcpp RcppArmadillo survival]; }; + spMC = derive2 { name="spMC"; version="0.3.8"; sha256="1glkyv6wmh766ssdlm4z7dck32r0284kwah0ksmmkwxkfw1qx7xb"; depends=[]; }; spTDyn = derive2 { name="spTDyn"; version="1.0"; sha256="0yrnbf9g1n1hrrra2vp6412wfky1bhy3b6raif9k82xvi9p9m6pz"; depends=[coda sp]; }; - spTest = derive2 { name="spTest"; version="0.2.3"; sha256="0pbmwm5k59vk0fg0qyirdn94v3x4k984bvifamaplr68s0x13i4b"; depends=[fields]; }; + spTest = derive2 { name="spTest"; version="0.2.4"; sha256="1pfyrim6m0pcwsxpin9z09569yzil49hsz5mndp723c9wkk8vn5h"; depends=[geoR sp]; }; spThin = derive2 { name="spThin"; version="0.1.0"; sha256="06qbk0qiaw7ly1ywbr4cnkmqfasymr7gbhvq8jjbljm0l69fgjpp"; depends=[fields knitr spam]; }; spTimer = derive2 { name="spTimer"; version="2.0-1"; sha256="15yrbxx44cqphhr71b5hiimwwjiwwpzny16xjb87nn2lc4mb53by"; depends=[coda sp]; }; spa = derive2 { name="spa"; version="2.0"; sha256="1np50qiiy3481xs8w0xfmyfl3aypikl1i1w8aa5n2qr16ksxrnq3"; depends=[cluster MASS]; }; - spaMM = derive2 { name="spaMM"; version="1.7.2"; sha256="07rwsk1yviphiw7jipx045y6806vzadx9ddzrm6mhhx879dn1j2q"; depends=[geometry lpSolveAPI MASS Matrix mvtnorm nlme proxy Rcpp RcppEigen]; }; - spaa = derive2 { name="spaa"; version="0.2.1"; sha256="0qlfbfvv97avbnixm5dz9il3dmd40wnpvv33jh7fa0mh740bircy"; depends=[]; }; + spaMM = derive2 { name="spaMM"; version="1.10.0"; sha256="1lr2y1pcbwpggq5fkfnbz76q0iixy9vj23akj2s9a7d6hxs01ya3"; depends=[geometry lpSolveAPI MASS Matrix mvtnorm nlme nloptr proxy Rcpp RcppEigen]; }; + spaa = derive2 { name="spaa"; version="0.2.2"; sha256="163iipz1knxx1lzby9a3n1f014yqkf25z1wpwwy4gbx7sia499d5"; depends=[]; }; space = derive2 { name="space"; version="0.1-1"; sha256="1qigfz62xz47hqi43aii3yr4h7ddvaf11a5nil7rqprgkd0k6mv3"; depends=[]; }; spaceExt = derive2 { name="spaceExt"; version="1.0"; sha256="0lp8qmb7vcgxqqpsi89zjy7kxpibg3x2mq205pjmsrbbh7saqzr4"; depends=[glasso limSolve]; }; spacejam = derive2 { name="spacejam"; version="1.1"; sha256="1mdxmfa1aifh3h279cklm4inin0cx3h0z2lm738bai34j6hpvar7"; depends=[igraph Matrix]; }; - spacetime = derive2 { name="spacetime"; version="1.1-5"; sha256="0r6ycr0apm12dahw9x00jrxjdwp3888wnbdi02dr3s3imxlfxkrz"; depends=[intervals lattice sp xts zoo]; }; + spacetime = derive2 { name="spacetime"; version="1.2-0"; sha256="1qd9bvnqknw8kaqz7xr5gkkhi3h1f2dvd70zax44g912nha13f7h"; depends=[intervals lattice sp xts zoo]; }; spacodiR = derive2 { name="spacodiR"; version="0.13.0115"; sha256="0c0grrvillpwjzv6fixviizq9l33y7486ypxniwg7i5j6k36nkpl"; depends=[colorspace picante Rcpp]; }; spacom = derive2 { name="spacom"; version="1.0-5"; sha256="0b6yh4q9f0ibwlwyckwaya9m645j22x6bdz9mz3chass8qza6bls"; depends=[foreach iterators lme4 Matrix nlme spdep]; }; - spam = derive2 { name="spam"; version="1.3-0"; sha256="1zw3c26dj3pj61mnb2xdfzvvlsiandfqax1zacg0cc4pd1d1g342"; depends=[]; }; + spaero = derive2 { name="spaero"; version="0.2.0"; sha256="0srkah89z23j30y2smlnyhf97mm123apma8vgmgfarbx188bkwpn"; depends=[]; }; + spam = derive2 { name="spam"; version="1.4-0"; sha256="0c278q2rmrxwhax58n8987j3rlg7c8bnxnn8r96y9kv4hjj1pjsk"; depends=[]; }; spanel = derive2 { name="spanel"; version="0.1"; sha256="1riyvvfij277mclgik41gyi01qv0k466wyk2wbqqhlvrlj79yzsc"; depends=[]; }; spanr = derive2 { name="spanr"; version="1.0"; sha256="1x29hky347kvmk9q75884vf6msgcmfi3w4lyarq99aasi442n1ps"; depends=[plyr stringr survival]; }; sparc = derive2 { name="sparc"; version="0.9.0"; sha256="0jsirrkmvrfxav9sphk8a4n52fg0d1vnk3i8m804i4xl0s7lrg8s"; depends=[]; }; sparcl = derive2 { name="sparcl"; version="1.0.3"; sha256="1348pi8akx1k6b7cf4bhpm4jqr5v8l5k086c7s6rbi5p6qlpsrvz"; depends=[]; }; spareserver = derive2 { name="spareserver"; version="1.0.1"; sha256="094q5i6v4v37hzfdyps8zni394z312r802hl04jw0xzzps922rq4"; depends=[assertthat httr pingr]; }; spark = derive2 { name="spark"; version="1.0.1"; sha256="03viih0r7bpv6zkm5ckk0c99lf2iv0fkgrzkbs1gg7ki9qyxji8c"; depends=[magrittr]; }; - sparkTable = derive2 { name="sparkTable"; version="1.2.0"; sha256="0hmdri8738gqn1dd9flqh1icd0r5mwnx4wnww0nwyr4anzxz2say"; depends=[boot Cairo ggplot2 gridExtra pixmap Rglpk RGraphics shiny StatMatch xtable]; }; + spark_sas7bdat = derive2 { name="spark.sas7bdat"; version="1.2"; sha256="1kvzfjhf1q5jzlq5d04s7d96j63vnvqqrh8s03rwkl79h1dhqhhp"; depends=[sparklyr]; }; + sparkTable = derive2 { name="sparkTable"; version="1.3.0"; sha256="1fc2nihxfrjpmxm9g9296mz5czd3ydvi1v37g8qgb20j7b73c64h"; depends=[boot Cairo ggplot2 gridExtra pixmap Rglpk RGraphics shiny StatMatch xtable]; }; + sparkline = derive2 { name="sparkline"; version="2.0"; sha256="0lrr1lm7603di7x3mf53cp13d9ssjh9gmb43wa6z9yqapis2djm2"; depends=[htmltools htmlwidgets]; }; + sparklyr = derive2 { name="sparklyr"; version="0.5.2"; sha256="0h09xjvq6sq7az5cxkac5840av2vgngp7b05gdrgc26d3x2qvpvm"; depends=[assertthat base64enc config DBI digest dplyr httr jsonlite lazyeval rappdirs readr rprojroot withr]; }; sparktex = derive2 { name="sparktex"; version="0.1"; sha256="0r6jnn9fj166pdhnjbsaqmfmnkq0qr1cjprihlnln9jad05mrkjx"; depends=[]; }; + sparkwarc = derive2 { name="sparkwarc"; version="0.1.1"; sha256="07b66f12fz19042kj7d9p32j9sy3103zvil36xkf21hm9iyg6xph"; depends=[DBI sparklyr]; }; sparr = derive2 { name="sparr"; version="0.3-8"; sha256="1vsfk769f6227wrxfpq3qbs9h8farfnmgq94pl2ra4hgvpvygsmr"; depends=[MASS rgl spatstat]; }; sparseBC = derive2 { name="sparseBC"; version="1.1"; sha256="1w60n2875n809lbrn0hd4kdmsyfd64aikgzxchza8b59x77l0psy"; depends=[fields glasso]; }; - sparseLDA = derive2 { name="sparseLDA"; version="0.1-7"; sha256="1rjjkvs9s25v85rdaxln8gnb88jhdj8s8lw8qxrjsgcgms7nvlqx"; depends=[elasticnet MASS mda]; }; + sparseFLMM = derive2 { name="sparseFLMM"; version="0.1.0"; sha256="1wrpjhb20mrkg9a5302phy4hrn5qfndjl78dx1v4a811clgfid8q"; depends=[data_table MASS Matrix mgcv refund]; }; + sparseHessianFD = derive2 { name="sparseHessianFD"; version="0.3.2"; sha256="1zn0nrdlgynxhq48cx8zi8bk2ir6zvfg1pgxr6j479j88q8hcjb3"; depends=[Matrix Rcpp RcppEigen]; }; + sparseLDA = derive2 { name="sparseLDA"; version="0.1-9"; sha256="1k3sw9kc40yxnfss4vrsx34qxmv8ssddyhbfjhxrdldvblhbwchb"; depends=[elasticnet MASS mda]; }; sparseLTSEigen = derive2 { name="sparseLTSEigen"; version="0.2.0"; sha256="11llmrkq0pnrdphgjvhmg269bq3xbbn4s7kd7xhvk62sigvspkcj"; depends=[Rcpp RcppEigen robustHD]; }; sparseMVN = derive2 { name="sparseMVN"; version="0.2.0"; sha256="12g387bvpy4249kwq946v006ab095zsmgfsrkc1yqncxhmjwrgqn"; depends=[Matrix]; }; sparseSEM = derive2 { name="sparseSEM"; version="2.5"; sha256="0ig8apsi94kvbcq3i8nzmywbdizlss7c6r9bppcyl9lxgikc3cds"; depends=[]; }; sparseSVM = derive2 { name="sparseSVM"; version="1.1-2"; sha256="1bv9ipfs275vr1hmz7g7w4rimvbkg15wjh3xj3cx1zam91k384k9"; depends=[]; }; - sparsediscrim = derive2 { name="sparsediscrim"; version="0.2"; sha256="0m8ccmqpg1np738njavf736qh917hd3blywyzc3vwa1xl59wqccl"; depends=[bdsmatrix corpcor mvtnorm]; }; + sparsebn = derive2 { name="sparsebn"; version="0.0.2"; sha256="116m32rb1m7bbvkhiwb1270h7jirp3ysck6gij054igqprm4lq74"; depends=[ccdrAlgorithm discretecdAlgorithm sparsebnUtils]; }; + sparsebnUtils = derive2 { name="sparsebnUtils"; version="0.0.3"; sha256="1qgnqad6klhzg80hmk48bws0yabd3akw7vs2v3sfrwx4ckl3h4ii"; depends=[Matrix nnet]; }; + sparsediscrim = derive2 { name="sparsediscrim"; version="0.2.3"; sha256="1sh6g1086l040547yajgyp4hq8yzlspdb6jmw4w1sv0zsmca25sv"; depends=[bdsmatrix corpcor dplyr ggplot2 mvtnorm]; }; sparsenet = derive2 { name="sparsenet"; version="1.2"; sha256="106a2q4syrcnmicrx92gnbsf2i5ml7pidwghrpl6926glj59j248"; depends=[glmnet shape]; }; + sparsepp = derive2 { name="sparsepp"; version="0.1.1"; sha256="0wzj4z333ns18a1byii601fp46dlq9q4dbprkc95yl30xpzmdx0b"; depends=[]; }; sparsereg = derive2 { name="sparsereg"; version="1.2"; sha256="1ipsang2fppmjx4h5ljgzx3c44z3lggc376ghrqqgmxb5ql8bcp3"; depends=[coda ggplot2 GIGrvg glmnet gridExtra MASS MCMCpack msm Rcpp RcppArmadillo VGAM]; }; + sparsestep = derive2 { name="sparsestep"; version="1.0.0"; sha256="0f3wrwiyn990sn3x9r50zgs8cr76nmyisdc7qismgx1nn5yx5z0g"; depends=[Matrix]; }; + sparsesvd = derive2 { name="sparsesvd"; version="0.1-1"; sha256="09qpky8vxkpycj6c4vn3nqlidhblgksh3n6w8sww4yhn0pm3rzn5"; depends=[Matrix]; }; + sparsevar = derive2 { name="sparsevar"; version="0.0.10"; sha256="069r0kbypmx7pw3z2v9l17qidw3d73rzf5zs6yn1adyvpsddjxi8"; depends=[doParallel flare ggplot2 glmnet Matrix mvtnorm ncvreg picasso reshape2]; }; spartan = derive2 { name="spartan"; version="2.3"; sha256="09j5f9f068m83279ncfxpyg8bnk25qjz20a9xlap8dpm50iidr24"; depends=[]; }; + spass = derive2 { name="spass"; version="1.0"; sha256="1pgv4yzbdv475gp53qz40ys731v9960cyxbp84gff6y5f2y4axah"; depends=[geepack MASS multcomp mvtnorm Rcpp]; }; spatcounts = derive2 { name="spatcounts"; version="1.1"; sha256="0rp8054aiwc62r1m3l4v5dh3cavbs5h2yb01453bw9rwis1pj2qm"; depends=[]; }; - spate = derive2 { name="spate"; version="1.4"; sha256="1cr63qm3hgz6viw6ynzjv7q5ckfsan7zhbp224gz4cgx5yjg0pn3"; depends=[mvtnorm truncnorm]; }; + spate = derive2 { name="spate"; version="1.5"; sha256="1hlh4iwx1lrl8r2gag33z2xdv6k4hg86ch4f0jlqnqkhm9hapshf"; depends=[mvtnorm truncnorm]; }; spatgraphs = derive2 { name="spatgraphs"; version="3.0"; sha256="04p2hlwb9rwck2v2j4hlf87wlqx1vz1czmljpk3xw3f0b1pf26sc"; depends=[Matrix Rcpp rgl]; }; spatial = derive2 { name="spatial"; version="7.3-11"; sha256="04aw8j533sn63ybyrf4hyhrqm4058vfcb7yhjy07kq92mk94hi32"; depends=[]; }; spatial_gev_bma = derive2 { name="spatial.gev.bma"; version="1.0"; sha256="1rjn0gsbgiv69brhnm0zj25ya3nyfh4yf6jizng85mvss3viv3hj"; depends=[coda msm SpatialExtremes]; }; spatial_tools = derive2 { name="spatial.tools"; version="1.4.8"; sha256="0qnsjfx974na87p3n7sp711sc13v6dmpvb2kjpvscixs8rsy03y1"; depends=[abind doParallel foreach iterators mmap raster rgdal]; }; + spatialClust = derive2 { name="spatialClust"; version="1.1.1"; sha256="042yrmh1rb0hxynxlbdpcissgy9zazs5aqx7vj388ibynzijck3r"; depends=[ggplot2 maptools rgeos sp]; }; spatialCovariance = derive2 { name="spatialCovariance"; version="0.6-9"; sha256="1m86s9a059spp97y37dcirrgjshcqzpdj11cq92vji624w4nrhlb"; depends=[]; }; - spatialEco = derive2 { name="spatialEco"; version="0.1-4"; sha256="086qf081gkwm507qqqiklwbj2jk8kqgnijhd7wi8mdvz3ilam0j3"; depends=[cluster RANN raster RCurl rgeos rms SDMTools sp spatstat spdep yaImpute]; }; + spatialEco = derive2 { name="spatialEco"; version="0.1-5"; sha256="04d6dqmayfs19922s1pg1rsi5b4hdj50665qkp02p0wbbnnkhvs4"; depends=[cluster RANN raster RCurl rgeos rms SDMTools sp SpatialPack spatstat spdep yaImpute]; }; spatialTailDep = derive2 { name="spatialTailDep"; version="1.0.2"; sha256="107yldc43pgbadxdisnc7vq8vyvcps1b1isyvxd0kyf59xldiq47"; depends=[cubature mvtnorm SpatialExtremes]; }; spatialfil = derive2 { name="spatialfil"; version="0.15"; sha256="01fbn9zblz7rjsgqy3ikdqpf0p0idvb6m96mf7m7qi2ps5f48vzj"; depends=[abind fields]; }; spatialkernel = derive2 { name="spatialkernel"; version="0.4-19"; sha256="0gbl6lrbaxzv2f975k0vd6ghrljgf1kjazld3hm7781kv1f87lji"; depends=[]; }; spatialnbda = derive2 { name="spatialnbda"; version="1.0"; sha256="14mx5jybymasyia752f3vnr5vmswcavbz8bpqr69vlxphw27qkwk"; depends=[mvtnorm SocialNetworks]; }; spatialprobit = derive2 { name="spatialprobit"; version="0.9-11"; sha256="1cpxxylc0pm7h9m83m2cklrh4jni5x79r5m5gibxi6viahwxn9kc"; depends=[Matrix mvtnorm spdep tmvtnorm]; }; - spatialsegregation = derive2 { name="spatialsegregation"; version="2.40"; sha256="0kpna2198nrj93bjsdgvj85wnjfj18psdq919fjnnhbzgzdkxs7l"; depends=[spatstat]; }; - spatstat = derive2 { name="spatstat"; version="1.45-0"; sha256="0ilvj3kskrxy93wrl3a883r3x25mqzsy834hzqrq9cqmgnaryw1r"; depends=[abind deldir goftest Matrix mgcv nlme polyclip tensor]; }; - spatsurv = derive2 { name="spatsurv"; version="0.9-11"; sha256="0wmjzccrx2k88i7kbxlxv8ig602b1k9pqb2hn3wxq1l4d8m4izw9"; depends=[fields geostatsp iterators Matrix OpenStreetMap RandomFields raster RColorBrewer rgeos rgl sp spatstat stringr survival]; }; + spatialsegregation = derive2 { name="spatialsegregation"; version="2.43"; sha256="1jwjgpyy0dpghjwallqvi20bb84ljrn2qmdb35r5l243da511n8f"; depends=[spatstat]; }; + spatstat = derive2 { name="spatstat"; version="1.49-0"; sha256="0il36ljlql7xc00w8czydv529xjmi7c7fb30sr2k9mr7chln64bf"; depends=[abind deldir goftest Matrix mgcv nlme polyclip rpart tensor]; }; + spatstat_utils = derive2 { name="spatstat.utils"; version="1.3-2"; sha256="0hky45v7hsg1anqvv5i0s6hndms18g5y9fbgy6r59yy7mybh6j4d"; depends=[]; }; + spatsurv = derive2 { name="spatsurv"; version="0.9-14"; sha256="1pd2dz7y64wi7bkw6nlnm6nyzkjk3pfxp2a3fmd3xrrp7fgsy7xk"; depends=[fields geostatsp iterators lubridate Matrix OpenStreetMap RandomFields raster RColorBrewer rgeos rgl sp spatstat stringr survival]; }; + spbabel = derive2 { name="spbabel"; version="0.4.5"; sha256="0qgng4w0jjm5rkq0arw4icv6xp9fhpv0b0kmy4wzh54qr3zhh2ja"; depends=[dplyr sp tibble]; }; spc = derive2 { name="spc"; version="0.5.3"; sha256="0y730vh04j4cyz5zfyx4xqfw07ic1l93197640q543adnmil40vf"; depends=[]; }; - spcadjust = derive2 { name="spcadjust"; version="1.0"; sha256="1p011x3g1awb2sajg19fhkyrf5d8w4h9qwckxxl1i23jk3kpkyjh"; depends=[]; }; + spcadjust = derive2 { name="spcadjust"; version="1.1"; sha256="016i3zaaq800x4niz4fixa57nfj1m10sz5xskff4vq4v9fjn2sl0"; depends=[]; }; spcosa = derive2 { name="spcosa"; version="0.3-6"; sha256="0zj5yr0by1pbixs4z6w3c6yr1k55k5gqmvjkwiq2gsgq00vs7q94"; depends=[ggplot2 rJava sp]; }; spcov = derive2 { name="spcov"; version="1.01"; sha256="1brmy64wbk56bwz9va7mc86a0ajbfy09qpjafyq2jv7gm7a35ph5"; depends=[]; }; - spcr = derive2 { name="spcr"; version="1.2.1"; sha256="0cm59cfw3c24i1br08fdzsz426ldljxb41pdrmbmma4a69jkv1sb"; depends=[]; }; + spcr = derive2 { name="spcr"; version="2.0"; sha256="1n0lva9brpzxysw6p7l88cj8d46jng2zd7zvr5brqldzd3yl63l9"; depends=[]; }; spd = derive2 { name="spd"; version="2.0-1"; sha256="00zxh4ri47b61jkcjf5idl9hhlfld6rhczsnhmjsax59884f2i8m"; depends=[KernSmooth]; }; - spdep = derive2 { name="spdep"; version="0.5-92"; sha256="1b5l6sfscnamfh957n3srgwc50f98az3071dcpqrhk4g4n2ws6yg"; depends=[boot coda deldir LearnBayes MASS Matrix nlme sp]; }; - spduration = derive2 { name="spduration"; version="0.15.0"; sha256="1kziinnmn119s43brjpraw5vbsjv41gf031iaq9nhln1qbd2kv5j"; depends=[corpcor MASS plyr Rcpp RcppArmadillo separationplot xtable]; }; + spdep = derive2 { name="spdep"; version="0.6-10"; sha256="0d94irvrpwlxsc7rw56lj8h72wigpxrsk3gsy6n37zr5l1yc2k5k"; depends=[boot coda deldir expm gmodels LearnBayes MASS Matrix nlme sp]; }; + spdownscale = derive2 { name="spdownscale"; version="0.1.0"; sha256="0pl560km9629iwy13h7359ab7ixzs09hg986kvk0xbnc348srb86"; depends=[]; }; + spdplyr = derive2 { name="spdplyr"; version="0.1.2"; sha256="056rdnz6qj24x8gl3aigcd84rk5c06r76wkcgn1rkaacs5b20qmq"; depends=[dplyr lazyeval sp spbabel tibble]; }; + spduration = derive2 { name="spduration"; version="0.15.1"; sha256="1kjr3vncns91ha1q3q1xp2ss12m80k5hixzccm1ggdc77ha3bjhv"; depends=[corpcor MASS plyr Rcpp RcppArmadillo separationplot xtable]; }; spdynmod = derive2 { name="spdynmod"; version="1.1.3"; sha256="0qh0kkxs6hk344k3fys0g9yy0xl0kwnwl18bgiak53fd1k7whskq"; depends=[animation deSolve raster sp]; }; spe = derive2 { name="spe"; version="1.1.2"; sha256="0xyx42n3gcsgqmy80nc9la6p6gq07anpzx0afwffyx9fv20fvys0"; depends=[]; }; - speaq = derive2 { name="speaq"; version="1.2.1"; sha256="0glvw1jdyc8w8b8m7l74d0rl74xfs4zmanmx4i41l7ynswhmqm01"; depends=[MassSpecWavelet]; }; + speaq = derive2 { name="speaq"; version="1.2.2"; sha256="03f6w575n8c8whi2hcxwspfs65112ykbwyn5nhx3r7x3dyqpk9v1"; depends=[MassSpecWavelet]; }; + speaq2 = derive2 { name="speaq2"; version="0.1.0"; sha256="0rrqh90vqi7l1nbwivzvygd292nnkgk26nyh2kw71pl3gfakmnml"; depends=[cluster data_table doSNOW foreach MassSpecWavelet mQTL]; }; speccalt = derive2 { name="speccalt"; version="0.1.1"; sha256="0j7rbidmmx78vgwsqvqjbjjh92fnkf2sdx0q79xlpjl2dph7d6l6"; depends=[]; }; speciesgeocodeR = derive2 { name="speciesgeocodeR"; version="1.0-4"; sha256="033877l9sxcvvzpyf9aw19sj8qfscim663j2y2az8bl9c79xw4ph"; depends=[maps raster sp]; }; specificity = derive2 { name="specificity"; version="0.1.1"; sha256="1gvlyx9crkzm3yyp1ln5j9czcg83k7grm6ijabhl919gjjr1p60n"; depends=[car]; }; specmine = derive2 { name="specmine"; version="1.0"; sha256="1dd8ymyq3894br2fv54r1z93aifh2iiz94a3r4xj1qq07005hr29"; depends=[baseline caret ChemoSpec compare ellipse genefilter GGally ggdendro ggplot2 hyperSpec impute MAIT MASS Metrics pcaPP pls qdap RColorBrewer rgl scatterplot3d xcms]; }; + spectral = derive2 { name="spectral"; version="1.0.1"; sha256="0mawgxz1gbzgb3lxm6gfbv3wan0ykziprqym8ajvdjsdq4fwkk2m"; depends=[rasterImage Rcpp]; }; spectral_methods = derive2 { name="spectral.methods"; version="0.7.2.133"; sha256="0k8kpk94d2qzqdk3fnf6h9jmwdyp8h3klr0ilm5siwq5wkcz339l"; depends=[abind DistributionUtils foreach JBTools ncdf_tools nnet raster RColorBrewer RNetCDF Rssa]; }; spectralGP = derive2 { name="spectralGP"; version="1.3.3"; sha256="1jf09nsil4r90vdj7n1k6ma9dzzx3bwv0fa7svil9pxrd2zlbkbs"; depends=[]; }; - speedglm = derive2 { name="speedglm"; version="0.3-1"; sha256="0zkzy17fjxcchh48dapjf856vn3la7sx1ki4v1w8cwapz634wz2j"; depends=[MASS Matrix]; }; + speedglm = derive2 { name="speedglm"; version="0.3-2"; sha256="1b25zimk0z7ad62yacqdg0zk0qs0jja4i918ym942xfw4j1z3jjz"; depends=[MASS Matrix]; }; + spef = derive2 { name="spef"; version="1.0-1"; sha256="0nf6kw5w6ifv2xp515cmd7p8l2dd224vzhh3fzcvykibqk49fdsp"; depends=[ggplot2 nleqslv plyr survival]; }; speff2trial = derive2 { name="speff2trial"; version="1.0.4"; sha256="0dj5mh2sdp6j4ijgv14hjr39rasab8g83lx1d9y50av11yhbf2pw"; depends=[leaps survival]; }; + spellcheckr = derive2 { name="spellcheckr"; version="0.1.2"; sha256="09snc1ymzr4njnr3w502b84dqwjjd414higjxqi48jvh27br5k1l"; depends=[data_table dplyr stringr]; }; sperich = derive2 { name="sperich"; version="1.5-7"; sha256="1apgq5nsl6nw674dy7bc7r7z962wcmqsia5n67a8n6c5lcgcif3f"; depends=[foreach rgdal SDMTools sp]; }; sperrorest = derive2 { name="sperrorest"; version="0.2-1"; sha256="17jq8r98pq3hsyiinxg30lddxwpwi696srsvm3lfxrzk11076j6v"; depends=[ROCR rpart]; }; - spfrontier = derive2 { name="spfrontier"; version="0.1.12"; sha256="1jy1604gppis7vbn55pv13bywy1aqwzshwj03bbfln0qxikzqzi0"; depends=[ezsim maxLik moments mvtnorm spdep tmvtnorm]; }; + spex = derive2 { name="spex"; version="0.1.0"; sha256="1d4dbj87ka7hrl4kmxll3al58i3k3ynxkmy25g95by6v8dfn7zb5"; depends=[raster sp]; }; + spfrontier = derive2 { name="spfrontier"; version="0.2.3"; sha256="0br54kkva4m3yyqfjh3cs5wf4kk3ax6yg0h8cl5qiy38dvssa5qd"; depends=[ezsim moments mvtnorm numDeriv optimx spdep tmvtnorm]; }; + spftir = derive2 { name="spftir"; version="0.1.0"; sha256="07vw8igy698jx671cj6hmf6ll9xvaq81fb6la7j95pqbd6jl284z"; depends=[pracma]; }; spgrass6 = derive2 { name="spgrass6"; version="0.8-9"; sha256="05xvdhisad0d7c69mvahzg6pvgvmb6dph50r34981palykic7qhn"; depends=[sp XML]; }; spgs = derive2 { name="spgs"; version="1.0"; sha256="1f75dvp6m5w5phg158ykvl4myvw6q4vysb2pc3bgm0f9fpcadfip"; depends=[]; }; - spgwr = derive2 { name="spgwr"; version="0.6-28"; sha256="1gwyfwsz9n7bz0n6sp6qd8qcl23r2i2kb38csxsh3pkrinnxy181"; depends=[sp]; }; + spgwr = derive2 { name="spgwr"; version="0.6-29"; sha256="05rw1ck2gf5c0aqpagcfijxghslppa6xdz7pnwanfclwq8ri1xqa"; depends=[sp]; }; sphereplot = derive2 { name="sphereplot"; version="1.5"; sha256="1i1p20h95cgw5wqp9bwfs9nygm4dxzsggz08ncjs1xrsvhhq9air"; depends=[rgl]; }; sphet = derive2 { name="sphet"; version="1.6"; sha256="0149wkak7lp2hj69d83rn05fzh9bsvyc1kyg0d3b69sx92kqlwr0"; depends=[Matrix nlme sp spdep]; }; spi = derive2 { name="spi"; version="1.1"; sha256="0gc504f7sji5x0kmsidnwfm7l5g4b1asl3jkn2jzsf2nvjnplx1z"; depends=[]; }; spider = derive2 { name="spider"; version="1.3-0"; sha256="1p6f8mlm055xq3qwa4bqn9kvq60p8fn2w0cc6qcr22cblm5ww7jp"; depends=[ape pegas]; }; spiders = derive2 { name="spiders"; version="1.2"; sha256="1qklm178bgkgpvrjf024jphsdh9can8300sf0702l4h0rk2daqbq"; depends=[plyr]; }; spikeSlabGAM = derive2 { name="spikeSlabGAM"; version="1.1-11"; sha256="1f16jvdj6kbiiypnbbj10nj7l88kkrxasrribqpjv7ai62dlximn"; depends=[akima cluster coda ggplot2 gridExtra MASS MCMCpack mvtnorm R2WinBUGS reshape scales]; }; + spikes = derive2 { name="spikes"; version="1.1"; sha256="080sna0sgii61kai5sirs6cijnvk1012djwfw705di9y2lvk1hqk"; depends=[emdbook]; }; spikeslab = derive2 { name="spikeslab"; version="1.1.5"; sha256="0dzkipbrpwki6fyk4hqlql3yhadwmclgbrx00bxahrmlaz1vjzh2"; depends=[lars randomForest]; }; spinyReg = derive2 { name="spinyReg"; version="0.1-0"; sha256="0kbg7rncrrl5xdsaw9vj909x97mfp77mjnvghczplmnwmmanyn72"; depends=[]; }; - splancs = derive2 { name="splancs"; version="2.01-38"; sha256="12x68i5yjq9526rsf2awp97yg19izkhcc8iha0ys65bmhzjc5hwf"; depends=[sp]; }; + splancs = derive2 { name="splancs"; version="2.01-39"; sha256="1lyzs7lbhw1pqmb4mr46ncm39wwrmin7qgshsr384j4023qwfqwd"; depends=[sp]; }; + splines2 = derive2 { name="splines2"; version="0.2.5"; sha256="048c43dhrri0xc02897jxgqw7c5ai2nyylhx3bvwsqg0hrj3c7rv"; depends=[]; }; + splitfngr = derive2 { name="splitfngr"; version="0.1.1"; sha256="0gz65acnkil9xjspl2kzpzyhj7lslga9g3p0k79xh25ia6qal5ws"; depends=[lbfgs]; }; splitstackshape = derive2 { name="splitstackshape"; version="1.4.2"; sha256="0m9karfh0pcy0jj3dzq87vybxv9gmcrq5m2k7byxpki95apbrsmg"; depends=[data_table]; }; - splm = derive2 { name="splm"; version="1.3-7"; sha256="1bfi80vg129v8d0vp7sigbhskl227lmbry1vmklvcczrjqf2bh45"; depends=[bdsmatrix ibdreg MASS Matrix maxLik nlme plm spam spdep]; }; + splm = derive2 { name="splm"; version="1.4-6"; sha256="1vclsx622zq7kdgb84dd74i6a1b27d0jnx29blzba77d24adyzmh"; depends=[bdsmatrix ibdreg MASS Matrix maxLik nlme plm spam spdep]; }; spls = derive2 { name="spls"; version="2.2-1"; sha256="0zgk9qd825zqgikpkg13jm8hi6ncg48qw5f985bi145nwy9j19xs"; depends=[MASS nnet pls]; }; - splus2R = derive2 { name="splus2R"; version="1.2-0"; sha256="0kmyr1azyh0m518kzwvvgz7hv1x5myj37xn7w2gfn0vbn5xl8pv1"; depends=[]; }; - splusTimeDate = derive2 { name="splusTimeDate"; version="2.5.0-135"; sha256="0hghggdcr70vfjx4npj37nmd96qvgrp1gpwa9bznvjkvyfawwy6i"; depends=[]; }; - splusTimeSeries = derive2 { name="splusTimeSeries"; version="1.5.0-73"; sha256="1csk0ffgg1bi2k1m2bbxl6aqqqxf6i8sc8d4azip8ck7rn8vya46"; depends=[splusTimeDate]; }; - spm12r = derive2 { name="spm12r"; version="1.1.1"; sha256="1zvf05jfqnimxqj39cmg35hjhnqc5hvkirai11silyiy5aya8ka4"; depends=[fslr git2r matlabr oro_nifti R_utils stringr]; }; + splus2R = derive2 { name="splus2R"; version="1.2-2"; sha256="0xrbj8vxy0pc6hl7m8abv71d3hjw47cl51s7j7priadyqczkq6sz"; depends=[]; }; + splusTimeDate = derive2 { name="splusTimeDate"; version="2.5.0-137"; sha256="0bpzv6a05hnqnnz2znnkb3f34r56krhc595zjnn82azxj4a53njh"; depends=[]; }; + splusTimeSeries = derive2 { name="splusTimeSeries"; version="1.5.0-74"; sha256="0aikw6ckc0a7lrgjlcdmqspgrx0fc4iysd7jynd2lsf1hxy4pz35"; depends=[splusTimeDate]; }; + spm12r = derive2 { name="spm12r"; version="2.0"; sha256="1bwc9mygsamlzp4f6a1ahycvwxpwap1bi55rm5y6p5hhr331gckf"; depends=[git2r matlabr neurobase oro_nifti R_utils]; }; spnet = derive2 { name="spnet"; version="0.9.1-0"; sha256="1fy0fpgz2k985brfqyza1l49y0w2j9z308n542pgmkzqsnsdscpw"; depends=[shape sp]; }; - spocc = derive2 { name="spocc"; version="0.4.5"; sha256="1lzs3x3dvjava2bylc0q0isavkh2sk1a85nswmj8rapfa261fzza"; depends=[data_table httr jsonlite lubridate rbison rebird rgbif ridigbio rvertnet V8 whisker]; }; - spoccutils = derive2 { name="spoccutils"; version="0.1.0"; sha256="1al7hydwwzqd8ky91ggklf7lk42g79cx24i47gapd84jnwmmkq56"; depends=[ggmap ggplot2 gistr httr leafletR RColorBrewer rworldmap sp spocc]; }; + spocc = derive2 { name="spocc"; version="0.6.0"; sha256="0xrwwac2d8j4c4qy6br9l6i9bqlqbmzmq34dp25xwhw1nla6mhvs"; depends=[data_table httr jsonlite lubridate rbison rebird rgbif ridigbio rvertnet tibble V8 whisker]; }; + spongecake = derive2 { name="spongecake"; version="0.1.1"; sha256="1bf2106ik4dp9xl68s8wzj5w6yl3syx8i39zxpp24rywb6f2i8n0"; depends=[ggplot2 jpeg magrittr plyr]; }; sporm = derive2 { name="sporm"; version="1.1"; sha256="07sxz62h4jb7xlqg08sj4wpx121n9jfk65196mnxdvb36lqmb4hp"; depends=[]; }; spray = derive2 { name="spray"; version="1.0"; sha256="12iv1sksxmac2ykrb8psfnaa9lzq6djv0a7a1x73jr3nflvrx9bh"; depends=[magic partitions Rcpp]; }; - sprex = derive2 { name="sprex"; version="1.1"; sha256="1lwkdi8g1dlfdnxxvspgpz6f5h2gml176xhfrcxa9gcy3y9rlcpm"; depends=[]; }; + sprex = derive2 { name="sprex"; version="1.4.1"; sha256="14idml4mipd4wyza7hqf49ww4dparmwaps35hxm8jg5h0w1pgh7j"; depends=[swfscMisc]; }; sprint = derive2 { name="sprint"; version="1.0.7"; sha256="1yzx1qjpxx9yc0hbm1mmha5b7aq13iflq66af597b7yj6abm7zjp"; depends=[boot e1071 ff randomForest rlecuyer]; }; sprinter = derive2 { name="sprinter"; version="1.1.0"; sha256="12v4l4fxijh2d46yzs0w4235a8raip5rfbxskl0dw7701ryh7n8g"; depends=[CoxBoost GAMBoost LogicReg randomForestSRC survival]; }; - sprintfr = derive2 { name="sprintfr"; version="0.1.0"; sha256="1jkrgvnybd2799alfrrd91bb7rdm8w0snx45brgrzlmwfvdrbfc7"; depends=[dplyr lazyeval magrittr stringi tidyr]; }; sprm = derive2 { name="sprm"; version="1.2.2"; sha256="0iyijkjnyz4yx2cmazlnhkk0f5ls0c2q2aikwlzl13w6zbj040a8"; depends=[cvTools ggplot2 pcaPP reshape2 robustbase]; }; sprsmdl = derive2 { name="sprsmdl"; version="0.1-0"; sha256="09klwsjp5w6p7dkn5ddmqp7m9a3zcmpr9vhcf00ynwyp1w7d26gi"; depends=[]; }; spsann = derive2 { name="spsann"; version="2.0-0"; sha256="1if86d9qm9b2798284axlkp35zxgzmzvp2816i5fqxn50j8fcqy3"; depends=[pedometrics Rcpp sp SpatialTools]; }; + spselect = derive2 { name="spselect"; version="0.0.1"; sha256="02aiml4dh40n6yl52ypramn4847ykdi4y5lhsmchnnp4nnnqycsn"; depends=[magic pracma tester]; }; spsi = derive2 { name="spsi"; version="0.1"; sha256="0q995hdp7knic6nca0kf5yzkvv8rsskisbzpkh9pijxjmp1wnjrx"; depends=[plot3D]; }; spsmooth = derive2 { name="spsmooth"; version="1.1-3"; sha256="09b740586zyi8npq0bmy8qifs9rq0rzhs9c300fr6pjpc7134xn4"; depends=[mgcv]; }; - spsurvey = derive2 { name="spsurvey"; version="3.1"; sha256="1dgrrar6k87xgcxhj3xi0zap5shr26d4hv6k3pfjihbwvygf82z8"; depends=[deldir foreign MASS rgeos sp]; }; + spsurvey = derive2 { name="spsurvey"; version="3.3"; sha256="1xpjimqkrwm77amqza4713psmg86bvz08gxdi35advq4w614f2w1"; depends=[deldir foreign Hmisc MASS rgeos sp]; }; spt = derive2 { name="spt"; version="1.13-8-8"; sha256="18s74pxfmsjaj92z2a34nq90caf61s84c616yv33a0xvfvp32qr5"; depends=[]; }; - sptm = derive2 { name="sptm"; version="14.10-11"; sha256="1g7dqfsyy0cvv3idx16bpny9z4f638aprbc50x8kk4zfk3km7wnr"; depends=[kyotil survey survival]; }; + sptm = derive2 { name="sptm"; version="16.7-9"; sha256="0x8824zccrwdl38jbhq8skzcvxb7a3b1zggkd7gmyjd94xvxll9k"; depends=[kyotil survey survival]; }; spuRs = derive2 { name="spuRs"; version="2.0.0"; sha256="0lbc3nny6idijdaxrxfkfrn40bxfyp9z3yl9mwb1k6cyd10v5mfj"; depends=[lattice MASS]; }; sqldf = derive2 { name="sqldf"; version="0.4-10"; sha256="0n8yvrg3gjgbc3vzq0vlf7fwhgm28kwf0jv25qy44x21n6fg11h7"; depends=[chron DBI gsubfn proto RSQLite]; }; sqliter = derive2 { name="sqliter"; version="0.1.0"; sha256="17jjljq60szz0m8p2wc5l56659aap7an5gknc848dp89ycjgj3zx"; depends=[DBI functional RSQLite stringr]; }; + sqlscore = derive2 { name="sqlscore"; version="0.1.1"; sha256="140g2kgfqcw6x3lq7bs90kvdx9kj81fr86hpcbg6dn3i8xslwrad"; depends=[dplyr]; }; sqlutils = derive2 { name="sqlutils"; version="1.2"; sha256="0dq4idg8i4hv9xg8jllllizqf3s75pdfm1wgncdjj52xhxh169pf"; depends=[DBI roxygen2 stringr]; }; squash = derive2 { name="squash"; version="1.0.7"; sha256="1wdnzagibh9fz7a3x6m4ixckh7493shvwxg7cn5kpnfzf8m1imyj"; depends=[]; }; + squid = derive2 { name="squid"; version="0.1.1"; sha256="0qv9lazgiqazhq096ybmllalm2l2h794ry4p1r93c10msxg37sdp"; depends=[arm data_table ggplot2 lme4 MASS shiny]; }; sra = derive2 { name="sra"; version="0.1.1"; sha256="03nqjcydl58ld0wq1f9f5p666qnvdfxb5vhd584sdilw1b730ykd"; depends=[]; }; srd = derive2 { name="srd"; version="1.0"; sha256="04j2gj7fn7p2rm34haayswrfhn6w5lln439d07m9g4c020kqqsr3"; depends=[animation colorspace plyr stringr survival]; }; - srvyr = derive2 { name="srvyr"; version="0.1.0"; sha256="0ppa8h4k49gmn0gmlmh7zn1lqpirh9p4zrj19vhw9x3fgca1klsc"; depends=[dplyr lazyeval magrittr survey]; }; - ss3sim = derive2 { name="ss3sim"; version="0.9.0"; sha256="1fnjrxjcb76g9xwa05lwhwkwxaxp03zfgzq9dy7jbibcclblh7a1"; depends=[bbmle dplyr foreach ggplot2 gtools lubridate magrittr plyr r4ss]; }; - ssa = derive2 { name="ssa"; version="1.1.0"; sha256="0jmnm7vhdz0v2shhcibfajpdzh23jpq4snjkdz7kgfh8g4yr0r2f"; depends=[]; }; + srvyr = derive2 { name="srvyr"; version="0.2.0"; sha256="0znhwp6111p4icrpgn22k48qlicxgripz3wslhmmkwydq00ndz9w"; depends=[dplyr lazyeval magrittr survey tibble]; }; + ss3sim = derive2 { name="ss3sim"; version="0.9.3"; sha256="0l2xd0d4hgz0b42fz7zf5dgd71fm5dsvhys4hg8c7j2nzzzx9hdk"; depends=[bbmle dplyr foreach ggplot2 gtools lubridate magrittr plyr r4ss]; }; + ssa = derive2 { name="ssa"; version="1.2.1"; sha256="10x58c57pa9x6svm4h4xrss72ikin9lpf3ihjwmnkgnaicvsd0bx"; depends=[iterators]; }; ssanv = derive2 { name="ssanv"; version="1.1"; sha256="17a4a5azxm5h2vxia16frcwdyd36phpfm7fi40q6mnnrwbpkzsjd"; depends=[]; }; + ssc = derive2 { name="ssc"; version="1.0"; sha256="1hhlpcm1mdwkcxrprk5nc2yi3l69lz13av50y3cyz5vj73jhsg44"; depends=[proxy]; }; sscor = derive2 { name="sscor"; version="0.2"; sha256="1kcrr90cxg6k4qkc3pidhkwf4dsnlgbxczxigr2afwpd9cpf104c"; depends=[mvtnorm pcaPP robustbase]; }; ssd = derive2 { name="ssd"; version="0.3"; sha256="1z61n9m6vn0ijawyz924ak0zfl9z13jsb4k4575b7c424ci2p6gy"; depends=[]; }; ssfa = derive2 { name="ssfa"; version="1.1"; sha256="0fkyalhsjmx2sf8xxkppf4vd272n99nbkxh1scidrsgp4jk6z7fx"; depends=[Matrix maxLik sp spdep]; }; ssfit = derive2 { name="ssfit"; version="1.1"; sha256="1fais0msi2ppgfp0vbx3qri7s9zs51i7n90w36xkwwac4f46bq5y"; depends=[survey]; }; ssh_utils = derive2 { name="ssh.utils"; version="1.0"; sha256="08313zzzgcyvzkrkq0w0yf748ya1a9shx5xnan5891v0lah9v0b1"; depends=[stringr]; }; ssize_fdr = derive2 { name="ssize.fdr"; version="1.2"; sha256="0y723lwsnmk3rxbhlsrny9hiy07a5p255ygy9qkj6mri64gk1hby"; depends=[]; }; - ssizeRNA = derive2 { name="ssizeRNA"; version="1.2.4"; sha256="0v7ca1xsnpx7zbgwx8196y13wdnlbxdrc4nv2r7m797anj9sjj6a"; depends=[Biobase edgeR limma MASS qvalue ssize_fdr]; }; + ssizeRNA = derive2 { name="ssizeRNA"; version="1.2.9"; sha256="1916r0hmhpfa0p1s8myqk8g4i8fgjqkm4wvpb4nf3sl69kfdva95"; depends=[Biobase edgeR limma MASS qvalue ssize_fdr]; }; + ssmn = derive2 { name="ssmn"; version="1.1"; sha256="1rab9yjb05g5rphqlhwvdwmsyqlv1f4m0rqxfv8c5pbh170nbwbc"; depends=[mnormt moments sn truncdist]; }; ssmrob = derive2 { name="ssmrob"; version="0.4"; sha256="1inndspir7571f54kalbj0h599v9k6dxdmp0n1l5r3a62vn45hd3"; depends=[MASS mvtnorm robustbase sampleSelection]; }; + ssmsn = derive2 { name="ssmsn"; version="0.2.0"; sha256="0fzqdkqhj5hh8pzcwh7i0rglgdq22a5mriyis8r1vhlkdc7n5m39"; depends=[MCMCpack]; }; sspline = derive2 { name="sspline"; version="0.1-6"; sha256="0d6ms8szyn39c7v0397d5ar2hrl8v1l2b7m8hlj37hgp70b9s55h"; depends=[]; }; sspse = derive2 { name="sspse"; version="0.5-1"; sha256="0gih9d0g4kp08c4v01p699lavb491khyj16i8vldhcb194bvs8m5"; depends=[coda]; }; - sss = derive2 { name="sss"; version="0.0-11"; sha256="0k7p1ws0w7wg9wyxcg1zpk8q6kr32l3jl6yd9r4qmzq04dwqrdgz"; depends=[plyr XML]; }; + sss = derive2 { name="sss"; version="0.0-14"; sha256="19xq1pj4lrlh68fi2vy8cjg9xhmykwibm9rcg9snfc1qc6kp062x"; depends=[XML]; }; ssvd = derive2 { name="ssvd"; version="1.0"; sha256="1fdpr38qi59ijrz16jixn6ii1hvmxfjirjqfcp7dxrqz9nx8x0sk"; depends=[]; }; - ssym = derive2 { name="ssym"; version="1.5.5"; sha256="1j2dm2q3bcg8r9nxhmdrsi3azwhyv3q8nsj1bvz8507hzg3qvnxf"; depends=[Formula GIGrvg normalp numDeriv sandwich survival]; }; + ssym = derive2 { name="ssym"; version="1.5.7"; sha256="0l5d921vlhd4qwddllrgcxpq3bhivvy5ikh3ixdy3s140rzpgwrv"; depends=[Formula GIGrvg normalp numDeriv sandwich survival]; }; st = derive2 { name="st"; version="1.2.5"; sha256="0dnyfjcz37gjjv87nrabb11gw2dlkqhq3mrxdpkzahx0w0g0q0pb"; depends=[corpcor fdrtool sda]; }; + stR = derive2 { name="stR"; version="0.3"; sha256="0zad25s9wp4lapkww3rdbqsd4y7p8xhz9is7avq400srxakinx7n"; depends=[foreach forecast Matrix quantreg rgl SparseM]; }; staTools = derive2 { name="staTools"; version="0.1.0"; sha256="1ksr0sjkhlwh0fkwcxjcxzbyxs1g78m4spkhrmgdpfzmk5zskqf9"; depends=[magicaxis Rcpp VGAM]; }; - stabledist = derive2 { name="stabledist"; version="0.7-0"; sha256="06xd3kkyand0gzyj5phxlfjyygn5jlsq7gbwh62pc390by7ld2c7"; depends=[]; }; - stabs = derive2 { name="stabs"; version="0.5-1"; sha256="0mlwbf8wf38mr39si31i4iz00hpsmchbhgagwgsf3x9422zpq92p"; depends=[]; }; + stable = derive2 { name="stable"; version="1.1.2"; sha256="11irpn0qfblzskdr71991jlmdrbqqqpszppn5pii3lr5hflqqr1d"; depends=[rmutil]; }; + stabledist = derive2 { name="stabledist"; version="0.7-1"; sha256="0scar396wiq6wkbkvwp4qrxqc1m075y56p37i6iry5rw796p1i86"; depends=[]; }; + stablespec = derive2 { name="stablespec"; version="0.2.3"; sha256="1amscsnsgv1jz1h2arvc5k6lrvzasb58m65lid0qw6k8pvxr9155"; depends=[ggm graph matrixcalc nsga2R polycor Rgraphviz sem]; }; + stabs = derive2 { name="stabs"; version="0.6-2"; sha256="0alzdj3lciggi9g3fj2lgdjb60dz6077nn4nb4wwd5nv7walp4sl"; depends=[]; }; stackoverflow = derive2 { name="stackoverflow"; version="0.1.2"; sha256="1psw96iscgsx11drmcnh0yjg2jjcaa4akmywh337i6gbgam8kj61"; depends=[]; }; - stacomirtools = derive2 { name="stacomirtools"; version="0.3"; sha256="1lbbnvmilf3j3hyhvpkyjd4b4sf3zwygilb8x0kjn2jfhkxnx4c1"; depends=[RODBC xtable]; }; + stacomirtools = derive2 { name="stacomirtools"; version="0.5.0"; sha256="1jq392dcv72r78iv4nd4scidn83l9wglgdzjcj8afr9d0ybdz3gk"; depends=[RODBC xtable]; }; stagePop = derive2 { name="stagePop"; version="1.1-1"; sha256="0949r5ibl3sb10sr5xsswxap3wd824riglrylk7fx43ynsv5hzpy"; depends=[deSolve PBSddesolve]; }; stam = derive2 { name="stam"; version="0.0-1"; sha256="1x1j45fir64kffny0nssb2hwn4rcp8gd2cjv6fw4yy0l4d0xi5iv"; depends=[np sp]; }; + stampr = derive2 { name="stampr"; version="0.1"; sha256="1w7zp5n41gzahv4psdgw5a5mylcxlf12931fnjz0q2cwqj9cwql5"; depends=[deldir maptools raster rgdal rgeos sp spdep]; }; stargazer = derive2 { name="stargazer"; version="5.2"; sha256="0nikfkzjr44piv8hng5ak4f8d7q78f2znw2df0gy223kis8q2hsd"; depends=[]; }; starma = derive2 { name="starma"; version="1.3"; sha256="07r0kyabhgbm2v39fcrw0qhxcxj9a9cb45g9chzcnn9qmvramcwx"; depends=[ggplot2 Rcpp RcppArmadillo scales]; }; - startupmsg = derive2 { name="startupmsg"; version="0.9"; sha256="1l75w4v1cf4kkb05akhgzk5n77zsj6h20ds8y0aa6kd2208zxd9f"; depends=[]; }; - stashR = derive2 { name="stashR"; version="0.3-5"; sha256="1lnpi1vb043aj4b9vmmy56anj4344709986b27hqaqk5ajzq9c3w"; depends=[digest filehash]; }; - statar = derive2 { name="statar"; version="0.6.0"; sha256="08pkjhn8g6f6jjx8gilmb9k2jdrkd8n17dgk2q7x5yjiviib1h00"; depends=[data_table dplyr ggplot2 lazyeval matrixStats stargazer stringr tidyr]; }; - statcheck = derive2 { name="statcheck"; version="1.0.1"; sha256="01b40bjagkj6hfyq9ppdlaafwgykv8p9s8sm0abd3if82ivdpixj"; depends=[plyr]; }; + starmie = derive2 { name="starmie"; version="0.1.2"; sha256="06cvl8gk78c55kcf4rd27d4gfzh2lcg7ldynvx4hclvbw7ak9zdq"; depends=[combinat data_table ggdendro ggplot2 ggrepel gridExtra iterpc label_switching MCL MCMCpack proxy purrr readr stringr tidyr]; }; + startup = derive2 { name="startup"; version="0.5.0"; sha256="1zhnvg47r4dgm85lvzgcacn2vlfz4pk4r1b263x9mg2ccjwpn8ld"; depends=[]; }; + startupmsg = derive2 { name="startupmsg"; version="0.9.3"; sha256="0i7j412xhyq6pk0gb5pp53sa455fwzpjyfd331j2d5qwk8dhrbh3"; depends=[]; }; + statar = derive2 { name="statar"; version="0.6.2"; sha256="1p1a17mc6zy5yffybf5q156yyr52mq0z4vmqss05hq3hlaygbbxz"; depends=[data_table dplyr ggplot2 lazyeval matrixStats stringr tidyr]; }; + statcheck = derive2 { name="statcheck"; version="1.2.2"; sha256="0bcv8klp75q8hlmwhax9lxx9i0kbhsz8442acbhxh5fn2pn2x9jm"; depends=[ggplot2 plyr]; }; + statcomp = derive2 { name="statcomp"; version="0.0.1.1000"; sha256="0ac4s8a955ka0rs2a3k93aq2cxzrc48ai0sl9kn4yaqcw1arv2ap"; depends=[zoo]; }; statebins = derive2 { name="statebins"; version="1.2.2"; sha256="0qfs796dk5x983qah32w3npv9mxzljp3g7kffdd0ansn3z7i1zbb"; depends=[ggplot2 gridExtra RColorBrewer scales]; }; - statfi = derive2 { name="statfi"; version="0.9.8"; sha256="0kg9bj2mmd95ysg604rcg4szqx3whbqm14fwivnd110jgfy20gk2"; depends=[pxR]; }; stationaRy = derive2 { name="stationaRy"; version="0.4.1"; sha256="1iyzg40vi1l4s68kh50in1p97pcb28z6n932cgrx5k1rv3api13g"; depends=[downloader dplyr leaflet lubridate plyr progress readr stringr]; }; - statmod = derive2 { name="statmod"; version="1.4.24"; sha256="0vvjj5qgykk8abkj25g92kvm9sx5s10ysm5dh4ywlmz2lzfi3ilf"; depends=[]; }; - statnet = derive2 { name="statnet"; version="2015.11.0"; sha256="0blrf7ag309d5h00w0zvcwbzif6s3nz5flazqrgkkykscn99kjxl"; depends=[ergm ergm_count network networkDynamic sna statnet_common tergm]; }; + statip = derive2 { name="statip"; version="0.1.4"; sha256="1vy3433rrifcix1m28lizbik3qrl2krdldbvmqfyp046xxf2inc1"; depends=[bazar dplyr]; }; + statisticalModeling = derive2 { name="statisticalModeling"; version="0.3.0"; sha256="018ap1hbv4m6y0c71f807apbb9bhr64kcfrn4w8ahhb2520l4mf8"; depends=[ggplot2 lazyeval magrittr mosaic rpart]; }; + statmod = derive2 { name="statmod"; version="1.4.27"; sha256="14yilq9d3z20hig4rs8bjqyydw3dfx90mhmzvw9w8p16h0s595sn"; depends=[]; }; + statnet = derive2 { name="statnet"; version="2016.9"; sha256="1j5z7awvac3sb66ma1lrc9j23m6hmzqfnqxc0znsm36h324y3y6s"; depends=[ergm ergm_count network networkDynamic sna statnet_common tergm]; }; statnet_common = derive2 { name="statnet.common"; version="3.3.0"; sha256="190gwkbzd1qh3d7v1xi13snp83jkpvsl7x4ac9x1pxybn3kw856p"; depends=[]; }; statnetWeb = derive2 { name="statnetWeb"; version="0.4.0"; sha256="0gqvvpz9435wakpgf5jsznwgd3fix1vyabh87bnnfsm3pfs7rf2x"; depends=[ergm lattice latticeExtra network RColorBrewer shiny sna]; }; - stdReg = derive2 { name="stdReg"; version="1.0"; sha256="1rixqpbbqcqfjm8nn3plypzhz38fcw9ryyvr0aq10vbymbxjx0jv"; depends=[data_table survival]; }; + statprograms = derive2 { name="statprograms"; version="0.1.0"; sha256="1jm8vnzccx34rhypkc5brx52k0f0g4z9cckzib43i5fcqd4skib6"; depends=[]; }; + statquotes = derive2 { name="statquotes"; version="0.2"; sha256="05qsffbgpgzrhk2nbyfa4a63ad06aj09bzcc11h9dl3sdz6jj7gr"; depends=[stringr tidytext wordcloud]; }; + stcov = derive2 { name="stcov"; version="0.1.0"; sha256="166w929sgd7nanw1zjhzwv50hd5vqhgsrgxnsga4dzrcvndalw70"; depends=[]; }; + stdReg = derive2 { name="stdReg"; version="2.1"; sha256="0h9h64vk52l7ai50f4pih0qdshsqsx5cm3fj1fjrcpbsfq7azg34"; depends=[data_table survival]; }; + stddiff = derive2 { name="stddiff"; version="1.0"; sha256="0jzl7khnmx0809x9b9nf1n7dj7yknfcblgsf7cpslvglrdzppp42"; depends=[]; }; + stdvectors = derive2 { name="stdvectors"; version="0.0.5"; sha256="0gxylknr146qyg9aj22md076cdhrsz75dg25a1hx8525cm71nwd6"; depends=[Rcpp]; }; steadyICA = derive2 { name="steadyICA"; version="1.0"; sha256="0mcalbsgajdpk45k9vpyavn079063hw4ihkw72n9wcy5nb0da14g"; depends=[clue combinat MASS Rcpp]; }; steepness = derive2 { name="steepness"; version="0.2-2"; sha256="0bw7wm7n2xspkmj90qsjfssnig683s3qwg1ndkq2aw3f6clh4ilm"; depends=[]; }; stellaR = derive2 { name="stellaR"; version="0.3-3"; sha256="098sz6b8pl3fyca3g6myp97nna368xhxf8krmibadnnsr49q5zs9"; depends=[]; }; + stepPenal = derive2 { name="stepPenal"; version="0.1"; sha256="09viapb4846g91jzf9364rdyd865b19v83pwcdm3p3xsjry9ffxk"; depends=[caret dfoptim glmnet mvtnorm pROC]; }; stepPlr = derive2 { name="stepPlr"; version="0.92"; sha256="16j32sk7ri4jdgss7vw5zz7s42rxk7rs376iyxzzpy1zcc9b64rv"; depends=[]; }; - stepR = derive2 { name="stepR"; version="1.0-3"; sha256="0c35bb6ba507cgjhzz7dnzidsjxd9r01r355b85j2fcsvcj4agwg"; depends=[]; }; + stepR = derive2 { name="stepR"; version="1.0-6"; sha256="1ywczjidcw1f7318rn3y73b12c1ck0947m6npn6k41y3i47dgh4i"; depends=[]; }; stepp = derive2 { name="stepp"; version="3.0-11"; sha256="0jrwfvcgh3sjm3zag93kjyny2qqsyiw988vnx6jw7s31bv9g0d6s"; depends=[car survival]; }; stepwise = derive2 { name="stepwise"; version="0.3"; sha256="1lbx1bxwkf9dw6q46w40pp7h5nkxgghmx8rkpaymm6iybc7gyir2"; depends=[]; }; stheoreme = derive2 { name="stheoreme"; version="1.2"; sha256="14w3jcbs8y8cz44xlq8yybr2jwgk3w7s2msgjhlp1vazy8959s65"; depends=[]; }; + sticky = derive2 { name="sticky"; version="0.4.0"; sha256="0ba7pjvavhm1jp5rk6szvi5d6fmy6z7n9z3qs2kxcraww8aa1gg8"; depends=[]; }; stilt = derive2 { name="stilt"; version="1.0.1"; sha256="1vrbbic0vqzgy574kzcr38iqyhax4wa6zl6w74n65z15map2fyma"; depends=[fields]; }; stima = derive2 { name="stima"; version="1.1"; sha256="1i8l7pfnqxx660h3r2jf6a9bj5ikg9hw7v8apwk98ms8l7q77p5l"; depends=[rpart]; }; stinepack = derive2 { name="stinepack"; version="1.3"; sha256="0kjpcjqkwndqs7cyc6w62z1nnkqmhkifz2w0bi341jh0ybmak4fq"; depends=[]; }; stlplus = derive2 { name="stlplus"; version="0.5.1"; sha256="14728xsm982z9sg4rbqg307pbwqlsiyzj8z3sr9wr6fi0dayf6z5"; depends=[lattice Rcpp yaImpute]; }; stm = derive2 { name="stm"; version="1.1.3"; sha256="09r95d6xw2b4q063x1j2a6wc9kyzphqc2dhfmlc9crir8fah9ayr"; depends=[glmnet lda Matrix matrixStats Rcpp RcppArmadillo slam stringr]; }; stmBrowser = derive2 { name="stmBrowser"; version="1.0"; sha256="0jfh0c835a2sxn2cqlmwdlzj2g2dmkfl2z3pkv4fc1ajggw2n7g2"; depends=[httr jsonlite rjson stm]; }; - stmCorrViz = derive2 { name="stmCorrViz"; version="1.2"; sha256="0mhwl64hv4hjq72mqnvc5ii94aibmc0fw5rmdrvsad4bj6gg67p3"; depends=[jsonlite stm]; }; + stmCorrViz = derive2 { name="stmCorrViz"; version="1.3"; sha256="1a4pckrbzsihyf1bqvw3cl0hxrc4yq1pnkgxgf4b8jday6zkxwcv"; depends=[jsonlite SnowballC stm tm]; }; + stmgui = derive2 { name="stmgui"; version="0.1.6"; sha256="1fn2m5l7y3p1riw39g6r3hpjxdccygih7yipp7dvc4msl9fm4h5c"; depends=[markdown shiny shinyBS shinyjs shinythemes stm tm]; }; stocc = derive2 { name="stocc"; version="1.30"; sha256="0xpf9101094l5l75p9lr64gwh2b8jh4saw6z6m2nbn197la3acpw"; depends=[coda fields Matrix rARPACK truncnorm]; }; stochprofML = derive2 { name="stochprofML"; version="1.2"; sha256="0gqfm2l2hq1dy3cvg9v2ksphydqdmaj8lppl5s5as2khnh6bd1l1"; depends=[MASS numDeriv]; }; - stochvol = derive2 { name="stochvol"; version="1.2.3"; sha256="122jw21qx44rpmrr5dbi4f98951b25ifj6277pfr4s4l4rsdkypz"; depends=[coda Rcpp RcppArmadillo]; }; + stochvol = derive2 { name="stochvol"; version="1.3.2"; sha256="08vn2ifbb7yc3b7c5pgklp9wr98vx1gv60gpsqba32xr6ijn49vd"; depends=[coda Rcpp RcppArmadillo]; }; stockPortfolio = derive2 { name="stockPortfolio"; version="1.2"; sha256="0k5ss6lf9yhcvc4hwqmcfpdn6qkbq5kaw0arldkl46391kac3bd1"; depends=[]; }; stocks = derive2 { name="stocks"; version="1.1.1"; sha256="1qwd16bw40w2ns7b0n9wm8l344r4vyk27rmg0vr5512zsrcjkcfb"; depends=[rbenchmark Rcpp]; }; stoichcalc = derive2 { name="stoichcalc"; version="1.1-3"; sha256="0z9fnapibfp070jxg27k74fdxpgszl07xiqfj448dkydpg8ydkrb"; depends=[]; }; - storr = derive2 { name="storr"; version="1.0.0"; sha256="0q10g2x0g3jrvdv49bbjw5qaf9gmsrl5x7fws2liflqf3k2f5kfj"; depends=[digest R6]; }; + stormwindmodel = derive2 { name="stormwindmodel"; version="0.1.0"; sha256="1pxkb0ijx04c4bk6szxhj8lxq6x76m8pyhxpf8xq63h4gh57fxh3"; depends=[dplyr ggplot2 lubridate maps plyr stringr tidyr weathermetrics]; }; + storr = derive2 { name="storr"; version="1.0.1"; sha256="1yc4z151dnbhcim7gvkylss239wcc7xlpjrfdc6qv8mf2gq1bv30"; depends=[digest R6]; }; stosim = derive2 { name="stosim"; version="0.0.12"; sha256="0c4sj5iirm542hx782izfdmy2m3kl5q28l10xjj0ib4xn5y6yx3c"; depends=[Rcpp tcltk2]; }; - stplanr = derive2 { name="stplanr"; version="0.1.1"; sha256="0fcyirhx4lxlwizrl9spblnqp8nv11xzjk90kbq3k0i7gpvrrbh8"; depends=[dplyr geosphere httr igraph jsonlite leaflet lubridate magrittr maptools openxlsx R_utils raster Rcpp RcppArmadillo RCurl readr rgdal rgeos RgoogleMaps sp stringi stringr]; }; - stpm = derive2 { name="stpm"; version="1.1.2"; sha256="0n875h6x31wcslqnqwwwl4gf18v4wgm18alw7fsdgwjjz5wdj3yx"; depends=[mice nloptr Rcpp RcppArmadillo sas7bdat survival]; }; + stplanr = derive2 { name="stplanr"; version="0.1.7-3"; sha256="07ap68vfksdyh29hqqhdq5mx17sppp6yqcx94swaryd51mc7rl72"; depends=[doParallel dplyr foreach geosphere httr igraph jsonlite lubridate maptools nabor openxlsx R_utils raster Rcpp RcppArmadillo readr rgdal rgeos RgoogleMaps sp stringi stringr]; }; + stpm = derive2 { name="stpm"; version="1.6.0"; sha256="1jfx9nkw66dhwrphqx9rpml53plzd5a831qmxz0012fkji9m0423"; depends=[mice nloptr Rcpp RcppArmadillo sas7bdat survival]; }; stpp = derive2 { name="stpp"; version="1.0-5"; sha256="1444dbwm0nyb5k8xjfrm25x984a7h9ln2vddrwjszfpmscv0iwm1"; depends=[KernSmooth spatstat splancs]; }; stppResid = derive2 { name="stppResid"; version="1.1"; sha256="0hgzsyy5y0sqd4d2agdr7p2kq0w51vs8f63dvj6j49h8cvgiws2x"; depends=[cubature deldir splancs]; }; strap = derive2 { name="strap"; version="1.4"; sha256="0gdvx02w0dv1cq9bb2yvap00lsssklfnqw0mwsgblcy2j6fln7b0"; depends=[ape geoscale]; }; - strataG = derive2 { name="strataG"; version="0.9.4"; sha256="0lxp6s0gfqxyla7mx19fbx6w8am3islv02iyyixi94xbwphpcqf3"; depends=[ape MASS pegas Rcpp reshape2]; }; + strat = derive2 { name="strat"; version="0.1"; sha256="1axxrp750kjzcgxjdqfscjmryv1mkv4l23zk8k23z8l4ymhd2f5w"; depends=[Hmisc Rcpp RcppArmadillo]; }; + strataG = derive2 { name="strataG"; version="1.0.5"; sha256="1q3b06hkkwdbh3zvd1lbsklwl8jm743bf17fnvdr8npxgpgqci15"; depends=[adegenet ape apex copula ggplot2 Hmisc pegas phangorn RColorBrewer Rcpp reshape2 swfscMisc]; }; + strategicplayers = derive2 { name="strategicplayers"; version="1.0"; sha256="19vijrlzawd701vvk9ig7yhzbirh39dxxcwfz8ywwvxxiaky5x55"; depends=[sna]; }; stratification = derive2 { name="stratification"; version="2.2-5"; sha256="0cgr49gvh12s6rr43878jxjkir7b7absqgbfsvj1bjlf2r3gyqy9"; depends=[]; }; stratigraph = derive2 { name="stratigraph"; version="0.66"; sha256="1idn5rwar9pxp1vsra68wrlhagmc92y5rs7vn4h63p35p357qdwz"; depends=[]; }; straweib = derive2 { name="straweib"; version="1.0"; sha256="0bh2f4n4i7fiki52sa57v96757qw1gn1lcn7vgxmc5hk5rzp2mi8"; depends=[]; }; - stream = derive2 { name="stream"; version="1.2-2"; sha256="1gkbgggdvmm2vimy2kffib3ca0z36fyy1x91anfg692xznb2qrrs"; depends=[animation clue cluster clusterGeneration dbscan fpc MASS mlbench proxy Rcpp]; }; + stream = derive2 { name="stream"; version="1.2-3"; sha256="0ngsbnm8zy2nzvsdbbqg1lyd9l0k537ql7y8ck85hmwxj7nxna4b"; depends=[animation clue cluster clusterGeneration dbscan fpc MASS mlbench proxy Rcpp]; }; streamMOA = derive2 { name="streamMOA"; version="1.1-2"; sha256="0mg113v8zy6kh67hm91xfd9kd1x8vvvx03svhz70nz9npw00pvlz"; depends=[rJava stream]; }; streamR = derive2 { name="streamR"; version="0.2.1"; sha256="1ml33mj7zqlzfyyam23xk5d25jkm3qr7rfj2kc5j5vgsih6kr0gl"; depends=[RCurl rjson]; }; - stremo = derive2 { name="stremo"; version="0.2"; sha256="13b9xnd8ykxrm8gnakh0ixbsb7yppqv3isga8dsz473wzy82y6h1"; depends=[lavaan MASS numDeriv]; }; + stremr = derive2 { name="stremr"; version="0.4"; sha256="0n8ickmzjqlxwrz8dsphh1nsbnsgp4mnwm52i5ji099ps5292f65"; depends=[assertthat data_table pander R6 Rcpp rmarkdown speedglm stringr zoo]; }; stressr = derive2 { name="stressr"; version="1.0.0"; sha256="00b93gfh1jd5r7i3dhsfqjidrczf693kyqlsa1krdndg8f0jkyj7"; depends=[lattice latticeExtra XML xts]; }; - stringdist = derive2 { name="stringdist"; version="0.9.4.1"; sha256="0a2j1h5kf0p14d117rq8fv6qbk8nwsianmkb73d0f6cb1ikadnmg"; depends=[]; }; + stringb = derive2 { name="stringb"; version="0.1.13"; sha256="004bp75yhrgr480v9774kfq7z5l9z0761cnrwj4yk7fxygk89a1x"; depends=[backports]; }; + stringdist = derive2 { name="stringdist"; version="0.9.4.4"; sha256="1qngrhin1kqkjkfla7hp7ch0sfzi4nhaxgyzskmy51sz4llq5n4p"; depends=[]; }; + stringformattr = derive2 { name="stringformattr"; version="0.1.1"; sha256="16kkmb933v8pzc4gwz4x2nm51sj82slwpxmmn6p6p8dq5nfzmx5q"; depends=[stringr]; }; stringgaussnet = derive2 { name="stringgaussnet"; version="1.1"; sha256="161fi78cd7yddbcq71z3fgx1q2sacg1n1ggrkrqz17icwzviqrh5"; depends=[AnnotationDbi biomaRt GO_db httr igraph limma org_Hs_eg_db pspearman RCurl RJSONIO simone VennDiagram]; }; - stringi = derive2 { name="stringi"; version="1.0-1"; sha256="1ld38536sswyywp6pyys3v8vkngbk5cksrhdxp8jyr6bz7qf8j77"; depends=[]; }; - stringr = derive2 { name="stringr"; version="1.0.0"; sha256="0jnz6r9yqyf7dschr2fnn1slg4wn6b4ik5q00j4zrh43bfw7s9pq"; depends=[magrittr stringi]; }; - stripless = derive2 { name="stripless"; version="1.0-1"; sha256="0r5vi6hybw3z7lrsmnjnrjl1gj9b7zf2iqfk2nqwxw4cky17i4cd"; depends=[lattice]; }; - strptimer = derive2 { name="strptimer"; version="0.1.0"; sha256="0fyrapai58rarf6xy9vlg3lmkzgdcpfchrkdlqj69jkiz7ngh4qv"; depends=[dplyr lazyeval magrittr stringi tidyr]; }; + stringi = derive2 { name="stringi"; version="1.1.2"; sha256="13i1p6j8mx31hsw2s4c2phm2llrrdakzixkm6i0axsxprri722z5"; depends=[]; }; + stringr = derive2 { name="stringr"; version="1.2.0"; sha256="16hj2rmv8x03lp6cp2jk0k2plibvbggf444kp05przdvd03v7l31"; depends=[magrittr stringi]; }; + strip = derive2 { name="strip"; version="0.1.1"; sha256="18pz6ix6d661fvg1k1yyyiiwa1gdixynmpxl725ffd9lpykmfqbw"; depends=[rlist]; }; + stripless = derive2 { name="stripless"; version="1.0-3"; sha256="08mdp7kq6r5bk77j09477d1dnn7iwa346pr24b5bqsxwnbknyrsr"; depends=[lattice]; }; + striprtf = derive2 { name="striprtf"; version="0.2.2"; sha256="0y709fcdb12iwwhridbvg4xh0j9kgiz75237caax2wxf01fisahz"; depends=[magrittr Rcpp stringr]; }; strucchange = derive2 { name="strucchange"; version="1.5-1"; sha256="0cdgvl6kphm2i59bmnppn1y3kv65ml111bk7yzpcx7vv8wh2w3kl"; depends=[sandwich zoo]; }; structSSI = derive2 { name="structSSI"; version="1.1.1"; sha256="06rwmrgqc4qy4x0bhlshjdsjxfmp5fr9d1wjglhlb1gbp72fmkdv"; depends=[ggplot2 igraph multtest reshape2 rjson]; }; + structree = derive2 { name="structree"; version="1.1.3"; sha256="1apiqbmmvqmn0nv5cfflfqlyh0108fvy8sg9gg8z6d6bfqkd4rhb"; depends=[mgcv penalized]; }; strum = derive2 { name="strum"; version="0.6.2"; sha256="0f5cb7cfvqhmnv4sjfr58lns4fclmr8iyka595zddy9f6dv5rqp1"; depends=[graph MASS Matrix pedigree Rcpp RcppArmadillo Rgraphviz]; }; - strvalidator = derive2 { name="strvalidator"; version="1.6.0"; sha256="0hy673c1dgxvkplph9g4iihn78diw98lchfhp5inzr2a8w5syyq3"; depends=[data_table ggplot2 gridExtra gtable gWidgets gWidgetsRGtk2 plyr RGtk2 scales]; }; - stsm = derive2 { name="stsm"; version="1.7"; sha256="080xakf7rf53vzv64g338hz87sk4cqfwd6ly4f122sxvn4xypq3n"; depends=[KFKSDS]; }; + strvalidator = derive2 { name="strvalidator"; version="1.8.0"; sha256="0c87256m6zx0m7qkkcdzfrb2x7gbl364499pj5xnfm274ib9l39x"; depends=[data_table ggplot2 gridExtra gtable gWidgets gWidgetsRGtk2 MASS plyr RGtk2 scales]; }; + stsm = derive2 { name="stsm"; version="1.9"; sha256="18ypmkd7l7m7qkahb0nqf8f1m8g4irxlw48v2ms0dq1bsnhbzx7j"; depends=[KFKSDS]; }; stsm_class = derive2 { name="stsm.class"; version="1.3"; sha256="19jrja5ff31gh5k2zqhqsyd7w2ivr4s6bkliash6x8fmd22h5zs8"; depends=[]; }; - stubthat = derive2 { name="stubthat"; version="0.1.0"; sha256="1k6s3sn3swm6pxbv81kw8p2m60q9m1nw64jgimf08qwsrsbfx11h"; depends=[]; }; - stylo = derive2 { name="stylo"; version="0.6.3"; sha256="18fp9m4sn63icyh5bn2f7xjjjk5c0a55i1b76vc1ydxkxipy9nvc"; depends=[ape class e1071 lattice pamr tcltk2 tsne]; }; + stubthat = derive2 { name="stubthat"; version="1.1.0"; sha256="0x4sy808pq7nqnprqrcpss0v3r8sa1z8bbs759jmybqs1b0ihnqf"; depends=[testthat]; }; + stylo = derive2 { name="stylo"; version="0.6.4"; sha256="1z4db5p83b3fb3cfy4y8a4pi5hybda283988ri7215fk7rifg1jk"; depends=[ape class e1071 lattice pamr tcltk2 tsne]; }; suRtex = derive2 { name="suRtex"; version="0.9"; sha256="0xcy3x1079v10bn3n3y6lxignb9n3h57w4hhrvzi5y14x05jjyda"; depends=[]; }; + subcopem2D = derive2 { name="subcopem2D"; version="1.2"; sha256="1yrjqg3y6i5m6k0zljq1p1pciicmc1vig3qd0wxaicz708rbp3yq"; depends=[]; }; + subdetect = derive2 { name="subdetect"; version="1.1"; sha256="1bcc13avs5w9vmwyf71cnjd2kwmcavmzpwyv8gvsn61n7b4j8wlk"; depends=[]; }; subgroup = derive2 { name="subgroup"; version="1.1"; sha256="1n3qw7vih1rngmp4fwjbs050ngby840frj28i8x7d7aa52ha2syf"; depends=[]; }; - subplex = derive2 { name="subplex"; version="1.1-6"; sha256="0camqd0n468h93jxvvcnclki66glr39rb87nvrkrbiklbqd0s1fp"; depends=[]; }; - subrank = derive2 { name="subrank"; version="0.9.6"; sha256="0a467lihs9njf7sx032cip1r1g7x2rlwk7220c499kl0h3zg9p0j"; depends=[]; }; - subscore = derive2 { name="subscore"; version="1.2"; sha256="0q96n7bplzb8hhaq48bnkq7wvgryf815qc5iql5780jsixwhgn04"; depends=[CTT]; }; - subselect = derive2 { name="subselect"; version="0.12-5"; sha256="00wlkj6p0p2x057zwwk1xdvji25yakgagf98ggixmvfrk1m1saa4"; depends=[]; }; + sublime = derive2 { name="sublime"; version="1.3"; sha256="0455fppc68azxknxjvxci4kjpcj6c1jkp9adbxqrn3qnnywaj5v2"; depends=[AnalyzeFMRI downloader oro_nifti]; }; + subniche = derive2 { name="subniche"; version="0.9.2"; sha256="05grwm3g2l8sarybrybn6010769y76m4bp5df69r94p7v10wmd29"; depends=[ade4]; }; + subplex = derive2 { name="subplex"; version="1.2-2"; sha256="10g1hv41w9g0pzj0k071zb3wglk7jl5p99v5maqpkr2v75mfkyry"; depends=[]; }; + subprocess = derive2 { name="subprocess"; version="0.8.0"; sha256="0hvja2gacr84izlsvxcbw1xmm57ycx0n9k5yn62p1v40d135wk9p"; depends=[]; }; + subrank = derive2 { name="subrank"; version="0.9.7"; sha256="0f1m4zk7s49f3kg8gz8g5af8r1x00m4zybdy5fmzvgnx9cx6crkc"; depends=[]; }; + subscore = derive2 { name="subscore"; version="2.0"; sha256="1vscmzw6ama2kc7ic6b2rfbbczcpyhp0m4dd5khg9vkyihww5b5h"; depends=[CTT irtoys]; }; + subselect = derive2 { name="subselect"; version="0.12-6"; sha256="157vkfxy570sl1q9nylpw0vs51h39zjx0m2yxiwdgvzvd6h4s3kr"; depends=[corpcor ISwR MASS]; }; subsemble = derive2 { name="subsemble"; version="0.0.9"; sha256="0vzjmxpdwagqb9p2r4f2xyghmrprx3nk58bd6zfskdgj0ymfgz5z"; depends=[SuperLearner]; }; subspace = derive2 { name="subspace"; version="1.0.4"; sha256="0p2j0lnwj3ym1v4xla6r97zjikb8alnibdc690xn9c0z21hmv43v"; depends=[colorspace ggvis rJava stringr]; }; + subspaceMOA = derive2 { name="subspaceMOA"; version="0.5.2"; sha256="051zlpqpxxhhryzv03bb0dz8m7ijhwahagpcwngvh0ccdpi32m7h"; depends=[fields ggplot2 gridExtra magrittr rJava shiny stream streamMOA]; }; subtype = derive2 { name="subtype"; version="1.0"; sha256="1094q46j0njkkqv09slliclp3jf8hkg4147hmisggy433xwd19xh"; depends=[penalized ROCR]; }; sudoku = derive2 { name="sudoku"; version="2.6"; sha256="13j7m06m38s654wn75kbbrin5nqda4faiawlsharxgrljcibcbrk"; depends=[]; }; - sudokuAlt = derive2 { name="sudokuAlt"; version="0.1-6"; sha256="1x3h6si0g4k5xc327daa85k74qh3dqbql7b4ynmasrb5xpcnb92b"; depends=[]; }; - summarytools = derive2 { name="summarytools"; version="0.4"; sha256="1hf20fddi128jv083ljylwqg1ij39hyf6kdnzfxalczl9572wih9"; depends=[htmltools pander pryr rapportools rstudioapi xtable]; }; + sudokuAlt = derive2 { name="sudokuAlt"; version="0.1-9"; sha256="1m4ggvg1nyx3l96zfg826sarfmwxcbjwpipqk5q2qsnhd12wymbd"; depends=[]; }; + summarytools = derive2 { name="summarytools"; version="0.6.5"; sha256="1ddvwn0rfyrlfar1kpwggxnpp9dpswdy8v5alcv3kanp540hnmb1"; depends=[Hmisc htmltools matrixStats pander pryr rapportools rstudioapi xtable]; }; + sunburstR = derive2 { name="sunburstR"; version="0.6.3"; sha256="0lirf37kb0vgsd3hijhx4pcmx1v59nw3ng53k0kyhgq24r3hzvxw"; depends=[d3r htmltools htmlwidgets]; }; supclust = derive2 { name="supclust"; version="1.0-7"; sha256="0437pccagvqv6ikdsgzpif9yyiv6p24lhn5frk6yqby2asj09727"; depends=[class rpart]; }; supcluster = derive2 { name="supcluster"; version="1.0"; sha256="1rkd4bpzzvzbmqaj907pqv53hxcgic0jklbsf5iayf0ra768b5w6"; depends=[gtools mvtnorm]; }; superMDS = derive2 { name="superMDS"; version="1.0.2"; sha256="0jxbwm3izk7bc3bd01ygisn6ihnapg9k5lr6nbkr96d3blpikk04"; depends=[]; }; superbiclust = derive2 { name="superbiclust"; version="1.1"; sha256="1gzjbzbl8y1nzdfhyd6dlrwjq8mwj43a26qav84s1bdzwx6dra48"; depends=[biclust fabia Matrix]; }; superdiag = derive2 { name="superdiag"; version="1.1"; sha256="0pa3mv74riabpm7j4587zww2364fszzlw48ijj1apcgz8y6pyqbw"; depends=[boa coda]; }; + superheat = derive2 { name="superheat"; version="0.1.0"; sha256="01v8s6px1k5fajlm6py3ksr1i853kwwlky1yryzhy3p1cxhwgg83"; depends=[dplyr ggdendro ggplot2 gtable magrittr plyr scales]; }; superpc = derive2 { name="superpc"; version="1.09"; sha256="1p3xlg2n7p57n54g2w4frfrng5vjh97kp6ax4mrgvj3pqmd1m69z"; depends=[survival]; }; + supervisedPRIM = derive2 { name="supervisedPRIM"; version="2.0.0"; sha256="1j5gsy119pvrhkkg048lyk6hjvn9x1bhmfy5g824gj3k1w5slrib"; depends=[prim]; }; support_BWS = derive2 { name="support.BWS"; version="0.1-3"; sha256="1qlh2zgmr3b6gz3xmncjawgg08c6kgfg3d2m9x78iw95x7p3p5h8"; depends=[]; }; + support_BWS2 = derive2 { name="support.BWS2"; version="0.1-0"; sha256="0r5b7arcab2brcq3maizcy53vbbkzcs5n0zirjj3n1id5cdb36zl"; depends=[]; }; support_CEs = derive2 { name="support.CEs"; version="0.4-1"; sha256="1rbyl7v6m07dsp08kkk9020bh39rhx89q7d05rc5kxb6f7y66jyz"; depends=[DoE_base MASS RCurl simex XML]; }; + supportInt = derive2 { name="supportInt"; version="1.1"; sha256="14fh75sds05c06xkcfbijd8my3sa9kpnczzh96xx0gwj1193yya9"; depends=[ProfileLikelihood]; }; surface = derive2 { name="surface"; version="0.4-1"; sha256="0z7fh09hjmxfmqzi588gjwqqlpj1a475aixrnvy911lkx3zfk146"; depends=[ape geiger MASS ouch]; }; + surrosurv = derive2 { name="surrosurv"; version="1.1.5"; sha256="1mga3xi41rhnpci7zb224j1jdzf4nli4mbr7jy8nibjyjw4ccdz9"; depends=[copula eha lme4 MASS msm mvmeta optextras optimx parfm SurvCorr survival]; }; surv2sampleComp = derive2 { name="surv2sampleComp"; version="1.0-4"; sha256="1ihz71vzrkd5ksy7421myrgkbww0z5k0ywcb2bfalxx2bd2cs2wf"; depends=[flexsurv plotrix survC1 survival]; }; survAUC = derive2 { name="survAUC"; version="1.0-5"; sha256="0bcj982ib1h0sjql09zbvx3h1m96jy9q37krmk6kfzw25ms6bzzr"; depends=[survival]; }; + survAWKMT2 = derive2 { name="survAWKMT2"; version="1.0.0"; sha256="1cv39rf1ia4nwrri9d9izy6lxndnfwqy2vzrb9rrxga2qplxl79k"; depends=[survival]; }; survAccuracyMeasures = derive2 { name="survAccuracyMeasures"; version="1.2"; sha256="1i41xkvqpxpq9spryh1syp57ymlzw71ygdjqn41rv8jjc9q52x9g"; depends=[Rcpp RcppArmadillo survival]; }; survC1 = derive2 { name="survC1"; version="1.0-2"; sha256="1bidjhq3k5ab7gqj1b2afngip7pp6c9c7q0m6ww7h7i2vg505l7v"; depends=[survival]; }; survIDINRI = derive2 { name="survIDINRI"; version="1.1-1"; sha256="03lsypx189zm28gv764gdq24a18jj3kpdk91ssa501qxj5jv7v29"; depends=[survC1 survival]; }; survJamda = derive2 { name="survJamda"; version="1.1.4"; sha256="14ly1g548ysm8jgsyrhj12zmd6i2lca7rsgby3jbwikyqyk1mx5q"; depends=[ecodist survcomp survival survivalROC survJamda_data]; }; survJamda_data = derive2 { name="survJamda.data"; version="1.0.2"; sha256="0a010v2ar48i5m0jiqjvdyqm93ckfgfmcmym9a02h0rclnizd75r"; depends=[]; }; - survMisc = derive2 { name="survMisc"; version="0.5.0"; sha256="1dkjbxlnad77awb0cj2qkw7n6i55rfc56v5aa3yb3fmixk6qw73v"; depends=[data_table ggplot2 gridExtra km_ci KMsurv knitr survival zoo]; }; + survMisc = derive2 { name="survMisc"; version="0.5.4"; sha256="1m24vnhxk410h117mz056j8xkhp1ivjn5wvpprc0rqnd374z6c84"; depends=[data_table ggplot2 gridExtra km_ci KMsurv knitr survival xtable zoo]; }; survPresmooth = derive2 { name="survPresmooth"; version="1.1-9"; sha256="146ni0xnqd4kfxfxm8nkrgk6v4nrf2hpbb957zh10kmvaa5f9mij"; depends=[]; }; - survRM2 = derive2 { name="survRM2"; version="1.0-1"; sha256="1qcjdx4a9b9dg8jkzak6rq4d4byf9377h43f1m3icdgf79vghlhr"; depends=[survival]; }; - survSNP = derive2 { name="survSNP"; version="0.23.2"; sha256="0vpk5qdvsagv5pnap7ja7smqvibvfp5v7smhikbbwl0h6l83jjw4"; depends=[foreach lattice Rcpp survival xtable]; }; - surveillance = derive2 { name="surveillance"; version="1.11.0"; sha256="0mnnr3cq4ksa9jrqmky96byxag8vv0ak95x2sfm7ppfcymcpb2ya"; depends=[MASS Matrix polyCub Rcpp sp spatstat xtable]; }; + survRM2 = derive2 { name="survRM2"; version="1.0-2"; sha256="0pvp65c1kkbkcci4l3cvq4a5krmv58jwb9abz5225ql6jyawzlsw"; depends=[survival]; }; + survSNP = derive2 { name="survSNP"; version="0.24"; sha256="0mzwcp8zfqvsiapa446si9qb6wyymnw5zj6acj6f2cfjpyi76k4w"; depends=[foreach lattice Rcpp survival xtable]; }; + surveillance = derive2 { name="surveillance"; version="1.13.0"; sha256="1451lcw4hr1np0hmghvkb7q3iwm7jfn8zfi85fr5qdkwsvkivsd1"; depends=[MASS Matrix nlme polyCub Rcpp sp spatstat xtable]; }; survexp_fr = derive2 { name="survexp.fr"; version="1.0"; sha256="12rjpnih0xld4dg5gl7gwxdxmrdmyzsymm7j05v98ynldd1jkjl8"; depends=[survival]; }; - survey = derive2 { name="survey"; version="3.30-3"; sha256="0vcyph1vpnl4xaqd85ffh1gm0dqhvgr3343q0mlycmyq485x0idy"; depends=[]; }; + survey = derive2 { name="survey"; version="3.31-5"; sha256="1ijlxcslzpy9aqgj1hkr4axhyga6ll4ybzqdw2y07adyz1fwvkpj"; depends=[lattice Matrix survival]; }; + surveybootstrap = derive2 { name="surveybootstrap"; version="0.0.1"; sha256="13rp6gj1dgdzcjbi2403pldygp1dyqx8zj0r1nvyghpi06x5gpb7"; depends=[dplyr functional plyr Rcpp RcppArmadillo stringr]; }; surveydata = derive2 { name="surveydata"; version="0.1-14"; sha256="1zcp3wb7yhsa59cl4bdw7p08vpviypvfa9hggwc60w7ashpky73i"; depends=[plyr stringr]; }; surveyeditor = derive2 { name="surveyeditor"; version="1.0"; sha256="073219bcn1hlxl9ql6gncfvgn0m37pz5sb7h94nq6lf35dymq5zq"; depends=[]; }; surveyoutliers = derive2 { name="surveyoutliers"; version="0.1"; sha256="03nqw0zir3x57gg23hgsr2s99pv958kfsygqfwly96rvfdhr5p3v"; depends=[]; }; - surveyplanning = derive2 { name="surveyplanning"; version="1.2"; sha256="0ha0q1d47iwdfxlgjs13ahhghwsmq4xqiiqk8ynkgdq7bfp88a7z"; depends=[data_table]; }; - survival = derive2 { name="survival"; version="2.38-3"; sha256="1hkji557sz4q86pp7xj3h4cdwsnfl1mlj4c6c917mnbijj3bm215"; depends=[]; }; + surveyplanning = derive2 { name="surveyplanning"; version="2.6"; sha256="1nxxyny9bzb8p65vgrlfqq9x3r275d8vl99f6yg621hyzpbyz6gf"; depends=[data_table laeken]; }; + survival = derive2 { name="survival"; version="2.40-1"; sha256="10pf0kq0g66k5rgizrvh29mq3r84acljw2jgrv5yp6z38xw23mci"; depends=[Matrix]; }; survivalMPL = derive2 { name="survivalMPL"; version="0.1.1"; sha256="0c4hr2q50snd5qm2drg4qzfkcz4klxr4jba6xpc8n2i8wn573cvc"; depends=[survival]; }; survivalROC = derive2 { name="survivalROC"; version="1.0.3"; sha256="0wnd65ff5w679hxa1zrpfrx9qg47q21pjxppsga6m3h4iq1yfj8l"; depends=[]; }; - survminer = derive2 { name="survminer"; version="0.2.0"; sha256="1id65p2q963an9lfp6pb9bm6h213hpa40pmar4h6x982a3dbjfzl"; depends=[ggplot2 gridExtra scales survival]; }; + survminer = derive2 { name="survminer"; version="0.2.4"; sha256="083hja5zid3ndfpx77vxm7vyqnjrq8c18vil8mch721fafhajrcd"; depends=[ggplot2 ggpubr gridExtra magrittr maxstat scales survival tidyr]; }; survrec = derive2 { name="survrec"; version="1.2-2"; sha256="0b77ncr1wg2xqqg1bv1bvb48kmd9h3ja2dysiggvprzjrj7hdlmx"; depends=[boot]; }; survsim = derive2 { name="survsim"; version="1.1.4"; sha256="16njbqlzmk34zrh485kc0a52yacdyj9z4z4a9zcq1z5psm87c58m"; depends=[eha statmod]; }; svDialogs = derive2 { name="svDialogs"; version="0.9-57"; sha256="1qwnimzqz7jam3jnhpr90bgwp9zlsswy2jl17brdpsrpiwcg6jlr"; depends=[svGUI]; }; @@ -7586,493 +9502,636 @@ in with self; { svd = derive2 { name="svd"; version="0.4"; sha256="06bw4nypj9p57py2vw26yhzn3gw7clvby1mxbg2s2wj3jyay47p5"; depends=[]; }; svdvis = derive2 { name="svdvis"; version="0.1"; sha256="1z3z86izl2gpxllpx56vn6kkdg9cjjikfd90hdjnfi4bmmpx50dn"; depends=[GGally ggplot2 gridExtra RColorBrewer reshape2 scales]; }; svdvisual = derive2 { name="svdvisual"; version="1.1"; sha256="02mzh2cy4jzb62fd4m1iyq499fzwar99p12pyanbdnmqlx206mc2"; depends=[lattice]; }; - svgPanZoom = derive2 { name="svgPanZoom"; version="0.3.2"; sha256="0hj4z6znp02p7gwadrqh9sagn8ydcwl52cckhinlycawjinzqcgs"; depends=[htmlwidgets]; }; - svgViewR = derive2 { name="svgViewR"; version="1.0.1"; sha256="1ggw5w5xjqp33z6nzszimcab3vkv4rliiilhcqbhppqlnhjb8nab"; depends=[]; }; - svglite = derive2 { name="svglite"; version="1.1.0"; sha256="11ryicjglfi6jvkk4jgg5kra42qbs5z2zid7jjhlslpjcljfwc70"; depends=[BH gdtools Rcpp]; }; - svmadmm = derive2 { name="svmadmm"; version="0.2"; sha256="0g4q96gzd4h6ykc6ny1v06zabyyw6vm2slsfbsnnkxk4gah46zyj"; depends=[kernlab]; }; - svmpath = derive2 { name="svmpath"; version="0.953"; sha256="0hqga4cwy1az8cckh3nkknbq1ag67f4m5xdg271f2jxvnmhdv6wv"; depends=[]; }; + svgPanZoom = derive2 { name="svgPanZoom"; version="0.3.3"; sha256="09gfa2943bvmjpnhnc2nr85wddkv662k30pxsqvvvq1va64rzpkc"; depends=[htmlwidgets]; }; + svgViewR = derive2 { name="svgViewR"; version="1.2"; sha256="0h3smaplnkkvbl9c6lwl67jbk34m6sygkh2d82xz66hbyw2i6q7k"; depends=[]; }; + svglite = derive2 { name="svglite"; version="1.2.0"; sha256="1s1gvmlmmna5y4jsn9h6438pg5b86fl4nwfvkgm6n4h6ljfgqyx3"; depends=[BH gdtools Rcpp]; }; + svmadmm = derive2 { name="svmadmm"; version="0.3"; sha256="15ccda1r9cc6v30j37i052rdwxgw0wg37hwyn2vp8c7bkr0ybgkm"; depends=[kernlab]; }; + svmpath = derive2 { name="svmpath"; version="0.955"; sha256="02j5xs4gg8k16imnwk6aram168cv1dqdrky3bszyc98l7xd0nlrj"; depends=[]; }; svs = derive2 { name="svs"; version="1.1.0"; sha256="0575msaxg04ck76mbr815m29y895qvg8b9qg4y0ggv6b1lvwp5p6"; depends=[gtools]; }; svyPVpack = derive2 { name="svyPVpack"; version="0.1-1"; sha256="15k5ziy2ng853jxl66wjr27lzc90l6i5qr08q8xgcs359vn02pmp"; depends=[survey]; }; + swCRTdesign = derive2 { name="swCRTdesign"; version="2.1"; sha256="0c5pya5jgpj5ncrvpzahhrbhl7b39w19f3vl06r8q0nandbn7rwq"; depends=[]; }; swamp = derive2 { name="swamp"; version="1.2.3"; sha256="1xpnq5yrmmsx3d48x411p7nx6zmwmfc9hz6m3v9avvpjkbc3glkg"; depends=[amap gplots impute MASS]; }; - sweidnumbr = derive2 { name="sweidnumbr"; version="1.1.0"; sha256="0ym7rnfd8wcab1vwpm64yh6day3ypzrlpvdrw5agc1nckhl9xp1p"; depends=[lubridate stringr]; }; - swirl = derive2 { name="swirl"; version="2.2.21"; sha256="0lpin7frm1a6y9lz0nyykhvydr1qbx85iqy24sm52r1vxycv2r8h"; depends=[digest httr RCurl stringr testthat yaml]; }; - swirlify = derive2 { name="swirlify"; version="0.4.1"; sha256="15xd18jgrqsq9w0qa64qxfcinrsy87mjbwc0s22x06yzhpcvcmdk"; depends=[rmarkdown stringr swirl whisker yaml]; }; + sweidnumbr = derive2 { name="sweidnumbr"; version="1.4.1"; sha256="014zbp6a66gv7b0f2gmzvifllz266zrc14ihawksvyp1mcxz2ipg"; depends=[lubridate stringr]; }; + swfscMisc = derive2 { name="swfscMisc"; version="1.2"; sha256="08p2crsx8zi6qprs14mhdyq9x5sjlp3a46c1zzvp6741an4fy640"; depends=[ggplot2 mapdata maps reshape2 spatstat]; }; + swirl = derive2 { name="swirl"; version="2.4.2"; sha256="1dmjpjyk1a76vyya2x47sakj7xspma0i20zhryraf52mavb5qnw9"; depends=[digest httr RCurl stringr testthat yaml]; }; + swirlify = derive2 { name="swirlify"; version="0.5.0"; sha256="1j5xrv9nbfxmwxr77qa545fcm0vg76zwv1l5msgykq2g6cc9vc4z"; depends=[base64enc rmarkdown shiny shinyAce stringr swirl whisker yaml]; }; switchnpreg = derive2 { name="switchnpreg"; version="0.8-0"; sha256="1vaanz01vd62ds2g2xv4kjlnvp13h59n8yqikwx07293ixd4qhpw"; depends=[expm fda HiddenMarkov MASS]; }; - switchr = derive2 { name="switchr"; version="0.9.19"; sha256="1x8vf6nmy1rsy25ijl2ycxcpwzwkmhffvlmmg5p30m7y4zmcm200"; depends=[]; }; + switchr = derive2 { name="switchr"; version="0.11.2"; sha256="0kwkadw1hfkjvlpgr8lfx9qknlml3alk8ka2yhbga019y7ifbm7y"; depends=[RCurl RJSONIO]; }; switchrGist = derive2 { name="switchrGist"; version="0.2.1"; sha256="0n8fzzsxm0m4yic133q07vki803zywhijadymrgyq7qlx3d1m97d"; depends=[gistr httpuv RJSONIO switchr]; }; - sybil = derive2 { name="sybil"; version="1.3.2"; sha256="1wpn5dmvhr6va3bh0pgrlv9sg8fmiy3h39jrm1391h5pkc65g0f1"; depends=[lattice Matrix]; }; - sybilDynFBA = derive2 { name="sybilDynFBA"; version="0.0.2"; sha256="1sqk6dwwfrwvgkwk6mra0i1dszhhvcwm58ax6m89sxk8n0nbmr4b"; depends=[sybil]; }; + sybil = derive2 { name="sybil"; version="2.0.0"; sha256="0nb5k5mpqpk1i83s0a8k4npi72imsywwm1jn1hh2vr5bx3sjwflw"; depends=[lattice Matrix]; }; + sybilDynFBA = derive2 { name="sybilDynFBA"; version="1.0.1"; sha256="1zyhvlzkcwnq3sh6gvi0v1crq94mr16bc5jnh0g9c8rbdl4v8r4x"; depends=[sybil]; }; sybilEFBA = derive2 { name="sybilEFBA"; version="1.0.2"; sha256="07c32xwql7sr217j8ixqd2pj43hhyr99vjdh7c106lsmqd1pifa4"; depends=[Matrix sybil]; }; - sybilSBML = derive2 { name="sybilSBML"; version="2.0.10"; sha256="0zw41lcq3b1qbs4ik7v3jjjqgm3hhi35mmxvq9vm78rrz1cz59b5"; depends=[Matrix sybil]; }; + sybilSBML = derive2 { name="sybilSBML"; version="3.0.1"; sha256="1dzx1cdvi4fvdqf5hliwwk3gn5ig2wzzxv2gr92760p9c84hmmrj"; depends=[Matrix sybil]; }; sybilccFBA = derive2 { name="sybilccFBA"; version="2.0.0"; sha256="0x0is1a56jyahaba6dk9inj5v248m8n46f70ynqyqp1xpiax1fkr"; depends=[Matrix sybil]; }; - sybilcycleFreeFlux = derive2 { name="sybilcycleFreeFlux"; version="1.0.1"; sha256="0ffmgnr239xz8864vmrqlhwwc97fqzzib6kwrsm7bszdnw1kkv3r"; depends=[MASS Matrix sybil]; }; + sybilcycleFreeFlux = derive2 { name="sybilcycleFreeFlux"; version="2.0.0"; sha256="0p3w7ipyrqrh7nf52h8qmr4fikyinm8an7npmcb7kwjd59rcy554"; depends=[MASS Matrix sybil]; }; + syllable = derive2 { name="syllable"; version="0.1.3"; sha256="1ymnczwx58h720hsm0s9zq3ddwg6gn6bgg0m8zw24i0nlivx0yjg"; depends=[data_table stringi textclean textshape]; }; symbolicDA = derive2 { name="symbolicDA"; version="0.4-2"; sha256="1vn7r7b7yyn2kp8j3ghw50z49yzvwhm0izc6wgc7a99300xrr77s"; depends=[ade4 cluster clusterSim e1071 rgl shapes XML]; }; symbols = derive2 { name="symbols"; version="1.1"; sha256="1234rx3divhg60p0h0zn11viqn51fm6b8876m6rip2i6z8vrg319"; depends=[shape]; }; symmoments = derive2 { name="symmoments"; version="1.2"; sha256="074k0285c0yri39zags420kjls6kjlvlhymg3r7y24h42zdy82d4"; depends=[combinat cubature multipol mvtnorm]; }; synRNASeqNet = derive2 { name="synRNASeqNet"; version="1.0"; sha256="05ncwbv8kvvhqqrxa8qq7s0jc6krs5a56ph04z50iwgd91rzyi7x"; depends=[GenKern igraph KernSmooth parmigene]; }; - synbreed = derive2 { name="synbreed"; version="0.11-29"; sha256="05f690d3gyr6zmp3s8ld5vy4a0ng8ikxpr28xi9l7m62j9c4pcic"; depends=[abind BGLR doBy igraph lattice LDheatmap MASS regress]; }; + synbreed = derive2 { name="synbreed"; version="0.11-41"; sha256="077ixxfipc7msrmg0p4v5nhqwn276bj2766h6y5m9gj208xz5d91"; depends=[abind BGLR doBy doParallel foreach igraph lattice LDheatmap MASS regress]; }; synbreedData = derive2 { name="synbreedData"; version="1.5"; sha256="16wv9r7p0n8726qv0jlizmkvnrqwjj1q4xaxvfmj9611rm47vckx"; depends=[]; }; synchronicity = derive2 { name="synchronicity"; version="1.1.9.1"; sha256="0d9skpwmsnkn4xb3f2kgyyv8bhdi0r9p1kj3cvi0s92fjjnpi00c"; depends=[BH bigmemory_sri Rcpp]; }; synchrony = derive2 { name="synchrony"; version="0.2.3"; sha256="0fi9a3j8dfslf1nqx8d53fi635y3aq8isxw0dbjbpgk7rc71nzby"; depends=[]; }; synlik = derive2 { name="synlik"; version="0.1.1"; sha256="0g4n78amydihsq4jg2i9barjm9g40zczasb31fj10yn6wir1dhv7"; depends=[Matrix Rcpp RcppArmadillo]; }; - synthpop = derive2 { name="synthpop"; version="1.2-1"; sha256="0siwgg16zky0dlw0wvl3n20y4pr94q3was8gw4llrla7jkh0g4pj"; depends=[foreign ggplot2 lattice MASS nnet party plyr polspline proto randomForest rpart]; }; + synthACS = derive2 { name="synthACS"; version="1.0.1"; sha256="0jbhiadgc8f6h7ga685cm5i8y59lf76r8sgd629xfjj4jxn8ckdm"; depends=[acs data_table Rcpp]; }; + synthpop = derive2 { name="synthpop"; version="1.3-1"; sha256="0vp79jxp4hr9wrc4dlh9ckkcpwiffdixr9jh1w6w1wkii3bjcani"; depends=[foreign ggplot2 lattice MASS nnet party plyr polspline proto randomForest rpart]; }; + sys = derive2 { name="sys"; version="1.1"; sha256="1wik7rbnd0a1mq52ziknil6rjyrsmwgyhkzr9pb5c7vxqydp0jnj"; depends=[]; }; sysfonts = derive2 { name="sysfonts"; version="0.5"; sha256="1vppj3jnag88351f8xfk9ds8gbbij3m55iq5rxbnrzy89c04zpzp"; depends=[]; }; + sysid = derive2 { name="sysid"; version="1.0.4"; sha256="0fr9gf5yjin3zvz850z4r4pqc1r4mwx8d46sl64i4csdm9qnqagy"; depends=[bitops ggplot2 polynom reshape2 signal tframe zoo]; }; systemfit = derive2 { name="systemfit"; version="1.1-18"; sha256="0sy0v0iz4qzrmazp5j63d62xvlyi9mw5ryd4msd1xmppdl7r453p"; depends=[car lmtest MASS Matrix sandwich]; }; - systemicrisk = derive2 { name="systemicrisk"; version="0.3"; sha256="07i3pjghx2v8brx0k6xy5bk1d263wwyh5mbg7bzs4vwn4dh5k08f"; depends=[lpSolve Rcpp]; }; - syuzhet = derive2 { name="syuzhet"; version="0.2.0"; sha256="1l83wjiv1xsxw4wrcgcj3ryisi7zn4sbdl0sail0rhw0g9y9cz76"; depends=[NLP openNLP]; }; + systemicrisk = derive2 { name="systemicrisk"; version="0.4"; sha256="1qpimrfr75l6phr425m7av02l57yyn1n2if7h26cndf9ynmv6vz1"; depends=[lpSolve Rcpp]; }; + syuzhet = derive2 { name="syuzhet"; version="1.0.0"; sha256="15qkjnnyf8fsiknr5jb550v34xs55x6psskbrkvr1vfwvbivkzcf"; depends=[dtt NLP openNLP zoo]; }; taRifx = derive2 { name="taRifx"; version="1.0.6"; sha256="10kp06hkdx1qrzh2zs9mkrgcnn6d31cldjczmk5h9n98r34hmirx"; depends=[plyr reshape2]; }; - taRifx_geo = derive2 { name="taRifx.geo"; version="1.0.6"; sha256="0w7nwp3kvidqhwaxaiq267h99akkrj6xgkviwj0w01511m2lzghs"; depends=[RCurl rgdal rgeos RJSONIO sp taRifx]; }; - tab = derive2 { name="tab"; version="3.1.1"; sha256="05wypi4v9r2qlgwafd9f58vnxn2c4fnz18l8xpb24nhdgm35adqy"; depends=[gee survey survival]; }; + tab = derive2 { name="tab"; version="3.1.2"; sha256="1vc5swfy9p3bsv5bqqgk4w81apzk6d0m1xz0cbhii7rpn7x6zh1h"; depends=[gee survey survival xtable]; }; taber = derive2 { name="taber"; version="0.1.0"; sha256="07a18kn65b4cxxf1z568n7adp6y3qx96nrff3a3714x241sd5p6i"; depends=[dplyr magrittr]; }; - tablaxlsx = derive2 { name="tablaxlsx"; version="1.0.8"; sha256="06l4rw6snhpkx6i74hh7i34mp9p1y7dwkpsmkq4083cm94hz308d"; depends=[openxlsx]; }; - table1xls = derive2 { name="table1xls"; version="0.3.1"; sha256="0zd93wrdj4q0ph375qlgdhpqm3n8s941vks5h07ks9gc8id1bnx5"; depends=[XLConnect]; }; + tablaxlsx = derive2 { name="tablaxlsx"; version="1.2.0"; sha256="1wrjasa4bdcv9pcfardm3v3k5f2lm7hrbm7xpyz0gy2ibm3b15pk"; depends=[openxlsx]; }; + table1xls = derive2 { name="table1xls"; version="0.3.2"; sha256="0b8j4gl4w3jz8hg89ja90sjvigjkqnrh4hpmky5q4a9swgwhmgf6"; depends=[XLConnect]; }; + tableHTML = derive2 { name="tableHTML"; version="0.2.12"; sha256="02a0j75d6praxp44m9idv116grzw6k9lhhgdjcxl2r9ci9cak1bn"; depends=[htmltools magrittr shiny]; }; + tableMatrix = derive2 { name="tableMatrix"; version="0.8"; sha256="00l03blrrkwdrihqnwz8afx6s3d7a19laj44584546yd3prqx5dy"; depends=[data_table]; }; tableone = derive2 { name="tableone"; version="0.7.3"; sha256="0ffir00gzrx4fxci018vra7m8hfiqmvlib52wlxikksna2ha51qv"; depends=[e1071 gmodels MASS survey zoo]; }; tableplot = derive2 { name="tableplot"; version="0.3-5"; sha256="1jkkl2jw7lwm5zkx2yaiwnq1s3li81vidjkyl393g1aqm9jf129l"; depends=[]; }; - tables = derive2 { name="tables"; version="0.7.79"; sha256="05f23y5ff961ksx4fnmwpf6zvc9573if8s2cmz9bwki66h2g9xb7"; depends=[Hmisc]; }; - tabplot = derive2 { name="tabplot"; version="1.1"; sha256="0vyc6b6h540sqwhrza2ijg7ghw2x8rla827b8qy2sh0ckm0ybjrx"; depends=[ffbase]; }; + tables = derive2 { name="tables"; version="0.8"; sha256="0a8ks6gs4n25khs51dr55z1665zbsyzv2849h7h9xwz8izv8l6za"; depends=[Hmisc]; }; + tabplot = derive2 { name="tabplot"; version="1.3-1"; sha256="0yz3npn36q93gr0k9a4x5swap5fwxfc22b131kif3dfxkgklna06"; depends=[bit ff ffbase]; }; tabplotd3 = derive2 { name="tabplotd3"; version="0.3.3"; sha256="0mbj45vb17wlnndpkhvq7xaawsb814x7zxa4rqbfgidvbm1p3abv"; depends=[brew httpuv RJSONIO Rook tabplot]; }; tabuSearch = derive2 { name="tabuSearch"; version="1.1"; sha256="0bri03jksm314xy537dldbdvgyq6sywfmpmj2g2acdcli31kkpq0"; depends=[]; }; - tadaatoolbox = derive2 { name="tadaatoolbox"; version="0.9.0"; sha256="0p0bnmycqkbg2zq0hlanap09pn7jl90l4pmmkfs2i7l58pql3cr9"; depends=[broom car dplyr ggplot2 haven lazyeval pixiedust pwr ryouready sjmisc vcd]; }; + tadaatoolbox = derive2 { name="tadaatoolbox"; version="0.10.0"; sha256="1n3fq68gk20bivkybdls3c6vdwlyxqg8rfsksskv0i4aj1vdvbdw"; depends=[broom car cowplot dplyr ggplot2 haven lazyeval nortest pixiedust pwr ryouready sjmisc vcd]; }; tagcloud = derive2 { name="tagcloud"; version="0.6"; sha256="04zrh029n8pjlxlr6pdd7xhqqhavbrj3fhvhj6ygzlvi2jslxnwl"; depends=[RColorBrewer Rcpp]; }; + tailDepFun = derive2 { name="tailDepFun"; version="1.0.0"; sha256="1z2jrzly1adiwi8y0pndyfggpr0li6sjv9rkrc5mi47s0qjvr5qj"; depends=[copula cubature mvtnorm SpatialExtremes]; }; tailloss = derive2 { name="tailloss"; version="1.0"; sha256="0lmjgjs6d94b70i10vx66fyvlxm5swwqbcjsnqa3lmldzz6m4jc1"; depends=[MASS]; }; - tau = derive2 { name="tau"; version="0.0-18"; sha256="04rj3jrcz4h60dqm1xmnmpr52csz1s7rf2wv6ivybgyvbq0w2ijf"; depends=[]; }; - tawny = derive2 { name="tawny"; version="2.1.2"; sha256="0ihg3qlng8swak1dfpbnlx5xc45d1i9rgqawmqa97v5m91smfa71"; depends=[futile_logger futile_matrix lambda_r lambda_tools PerformanceAnalytics quantmod tawny_types xts zoo]; }; + tau = derive2 { name="tau"; version="0.0-19"; sha256="0z7ylw590r7jrw4rlmhahxiwqrnw3124fssnzqs36qa7pa3zqhq2"; depends=[]; }; + tawny = derive2 { name="tawny"; version="2.1.6"; sha256="0s6p0nnz1rpcnn2yfj1vvl54g57d8rv5s4y09azwz1z5ls7vnnlv"; depends=[futile_logger futile_matrix lambda_r lambda_tools PerformanceAnalytics quantmod tawny_types xts zoo]; }; tawny_types = derive2 { name="tawny.types"; version="1.1.3"; sha256="1v0k6nn45rdczjn5ymsp2fqq0ijnlniyf3bc08ibd8yd1jcdyjnj"; depends=[futile_logger futile_options lambda_r lambda_tools quantmod xts zoo]; }; - taxize = derive2 { name="taxize"; version="0.7.4"; sha256="17gpd471awjr798q4973kj4xgrdqlgjdxp7fzpr9sf969vaz1jq8"; depends=[ape bold data_table foreach httr jsonlite plyr reshape2 rredlist stringr xml2]; }; + taxize = derive2 { name="taxize"; version="0.8.4"; sha256="03zfrkcpkbzqkm3w9m9g34nhrrp36l630l8rhpnsnkqnfxybb3yv"; depends=[ape bold data_table foreach httr jsonlite natserv plyr reshape2 ritis rotl rredlist stringr tibble worrms xml2]; }; tbart = derive2 { name="tbart"; version="1.0"; sha256="0m8l9ic7na70il6r9ha0pyrjwznbgjq7gk5xwa5k9px4ysws29k5"; depends=[Rcpp sp]; }; tbdiag = derive2 { name="tbdiag"; version="0.1"; sha256="1wr2whgdk84426hb2pf8iiyradh9c61gyazvcrnbkgx2injkz65q"; depends=[]; }; - tcR = derive2 { name="tcR"; version="2.2.1.7"; sha256="1m37ndk73y267q6byzpf8kfx8vsd5j2xdspcgkz6743fkaj1myam"; depends=[data_table dplyr ggplot2 gridExtra gtable igraph Rcpp reshape2 scales stringdist]; }; + tcR = derive2 { name="tcR"; version="2.2.1.11"; sha256="1wyxjwyba08m80g2c40sdg3d5brs3qmq8azb6vzwh2wmgqlb5400"; depends=[data_table dplyr ggplot2 gridExtra gtable igraph Rcpp reshape2 scales stringdist]; }; + tcgsaseq = derive2 { name="tcgsaseq"; version="1.4.1"; sha256="09hswqmj7svyiqdbbg7shimhkgxmz0m8w6bknx9qd987hik9asx8"; depends=[CompQuadForm ggplot2 GSA KernSmooth]; }; tcltk2 = derive2 { name="tcltk2"; version="1.2-11"; sha256="1ibxld379600xx7kiqq3fck083s8psry12859980218rnzikl65d"; depends=[]; }; tclust = derive2 { name="tclust"; version="1.2-3"; sha256="0a1b7yp4l9wf6ic5czizyl2cnxrc1virj0icr8i6m1vv23jd8jfp"; depends=[cluster mclust mvtnorm sn]; }; + tcpl = derive2 { name="tcpl"; version="1.2.2"; sha256="1f32qq5816qkyx3n16vgf13g2piv2pqn2nki3c91vg51bwfap7z1"; depends=[data_table DBI numDeriv RColorBrewer RMySQL RSQLite]; }; + tdROC = derive2 { name="tdROC"; version="1.0"; sha256="137j1m9pysjcz1gsfcym0438by3c7na21ccjlqf7xfccr1y8k2k6"; depends=[survival]; }; tdr = derive2 { name="tdr"; version="0.11"; sha256="1ga1lczqj5pka2yz7igxfm83xmkx7lla8pz6ryij0ybn284agszs"; depends=[ggplot2 lattice RColorBrewer]; }; tdthap = derive2 { name="tdthap"; version="1.1-7"; sha256="0lqcw4bzjd995pwn2yrmzay82gnkxnmxxsqplpbn5gg8p6sf5qqk"; depends=[]; }; - teigen = derive2 { name="teigen"; version="2.1.0"; sha256="1b9vkz812jsvzxs4751q8zmkvbc1bh4zbi4pd0550b181vxnn8wa"; depends=[]; }; + tea = derive2 { name="tea"; version="1.0"; sha256="03wxhbgx17hl9bbzbfjmfa30q4fqszhs5y9imbp768fmzwbppn24"; depends=[eva]; }; + teda = derive2 { name="teda"; version="0.1.1"; sha256="0yx469jbkw9cgx73zi5mkykrdn16kn01zh524x9411314aa32avx"; depends=[]; }; + teigen = derive2 { name="teigen"; version="2.2.0"; sha256="0ljm8dz4hndnc37psr7mnl1gbxs1kghygz3cyqzld1xpjwsjc2cz"; depends=[]; }; + telegram = derive2 { name="telegram"; version="0.6.0"; sha256="02wwa115f0vz2d9y4nf01397hjkpc3cv2gdl47snrajrm41gji7y"; depends=[curl httr jsonlite R6]; }; + tempR = derive2 { name="tempR"; version="0.9.9.9"; sha256="1g2rj26a9zm4qbq2k325h112bb6w8qgifhzd1zhc2vql0bk6i18k"; depends=[]; }; tempcyclesdata = derive2 { name="tempcyclesdata"; version="1.0.1"; sha256="0hciachv59kjpjs119r4z24jskzgnassi1yjg3cgl2r0hyglxxc3"; depends=[]; }; - tempdisagg = derive2 { name="tempdisagg"; version="0.24.0"; sha256="02ld14mppyyqvgz537sypr3mqc758cchfcmpj46b7wswwa2y7fyz"; depends=[]; }; + tempdisagg = derive2 { name="tempdisagg"; version="0.25.0"; sha256="0zi11jqb3i5kd2z1bbkz8y7g16kmkcn3xpkwj2brv0s86wxwsny7"; depends=[]; }; + templates = derive2 { name="templates"; version="0.1.0"; sha256="133gzc7hz0dh1myv7b0rmcz14x0n1gy7pj948gci70sikvdvbvp5"; depends=[dat magrittr modules stringr]; }; tensor = derive2 { name="tensor"; version="1.5"; sha256="19mfsgr6vz4lgwidm80i4yw0y1dr3n8i6qz7g4n2xa0k74zc5pp1"; depends=[]; }; tensorA = derive2 { name="tensorA"; version="0.36"; sha256="1xpczn94a6vfkfibfvr71a7wccksg16pc22h0inpafna4qpygcwp"; depends=[]; }; + tensorBF = derive2 { name="tensorBF"; version="1.0.1"; sha256="1rnsff1ypwhn5z0xsxyk2z7jl6igscma1a0w613i81qf37iy81ba"; depends=[tensor]; }; + tensorBSS = derive2 { name="tensorBSS"; version="0.2"; sha256="0bwqv5cxr5lf2p6xa2p03kwhanrzskz8k3xif1myfjhdw1vzyqib"; depends=[JADE Rcpp RcppArmadillo tensor tsBSS]; }; tensr = derive2 { name="tensr"; version="1.0.0"; sha256="05gclhljflkz98hgiq5bgbqjz8icxbdq6b84bn2995cx7v0x85ds"; depends=[]; }; - tergm = derive2 { name="tergm"; version="3.3.1"; sha256="1k10pmm3b62naw4mcy7318yzjq1j1s5qqjsmz90vnh0dajfhvhbw"; depends=[coda ergm network networkDynamic nlme robustbase statnet_common]; }; + tergm = derive2 { name="tergm"; version="3.4.0"; sha256="19658k5570z8yxpklbbl87a7pd8i4yygi0ky8lgzb8qymds90v4s"; depends=[coda ergm MASS network networkDynamic nlme robustbase statnet_common]; }; termstrc = derive2 { name="termstrc"; version="1.3.7"; sha256="12bycwhjrhkadafcckc30jr0md0ssj21n4v75yjhy21yvqjx1d7a"; depends=[lmtest Rcpp rgl sandwich urca zoo]; }; ternvis = derive2 { name="ternvis"; version="1.1"; sha256="16q1a1ns7q0d46js2m1hr6zm8msg3ncgp8w7yrwch11xq0759sb4"; depends=[dichromat mapdata maps maptools quadprog]; }; + tesseract = derive2 { name="tesseract"; version="1.3"; sha256="17rk3m4rd2qk8vhnkrnn6sffdlvg1amvawdkfp0fi2ip3p0qcrs4"; depends=[curl digest Rcpp]; }; + testassay = derive2 { name="testassay"; version="0.1.0"; sha256="06gks3k04m45kn946i525261v33ymwxpvgdy84kc7sp01xxx4rfv"; depends=[]; }; tester = derive2 { name="tester"; version="0.1.7"; sha256="1x5m43abk3x3fvb2yrb1xwa7rb4jxl8wjrnkyd899ii1kh8lbimr"; depends=[]; }; - testit = derive2 { name="testit"; version="0.5"; sha256="1v39mz4qrcml90p5d1z9x0cs2llj2pgfpymdwndh9r94ndlzs5hl"; depends=[]; }; - testthat = derive2 { name="testthat"; version="0.11.0"; sha256="1fks5d4sbh4ya1va1p2815kwrklflm8ifplp6kjx1d1y09hrx9i4"; depends=[crayon digest praise]; }; - testthatsomemore = derive2 { name="testthatsomemore"; version="0.1"; sha256="0j9sszm4l0mn7nqz47li6fq5ycb3yawc2yrad9ngb75cvp47ikkk"; depends=[testthat]; }; - texmex = derive2 { name="texmex"; version="2.1"; sha256="17x4xw2h4g9a10zk4mvi3jz3gf4rf81b29hg2g3gq6a6nrxsj8sy"; depends=[mvtnorm]; }; - texmexseq = derive2 { name="texmexseq"; version="0.1"; sha256="18lpihiwpjkjkc1n7ka6rzasrwv8npn4939s1gl8g1jb27vnhzb5"; depends=[]; }; - texreg = derive2 { name="texreg"; version="1.36.4"; sha256="11iivv5pslwqd0nbi533jyigwd16yx2mx1gl22ip8ghqvllfzxmk"; depends=[]; }; - text2vec = derive2 { name="text2vec"; version="0.2.0"; sha256="0s73phk4dzm1f9wcj5b1iha1g6rv3hvd6iwy97kgwxqd308cas48"; depends=[digest iterators magrittr Matrix Rcpp RcppParallel readr stringr]; }; - textcat = derive2 { name="textcat"; version="1.0-4"; sha256="0mxxs2zq6zijh954r7zxvh2l416k49jghzbdzwcm55mf133lb07z"; depends=[slam tau]; }; + testforDEP = derive2 { name="testforDEP"; version="0.2.0"; sha256="1mgzhj8b35r5cm4bl0nnyxj0h7rwd28d17qvgvaky2kvm2r83cf9"; depends=[Hmisc minerva Rcpp]; }; + testit = derive2 { name="testit"; version="0.6"; sha256="05ll0vg30gbb2x7pal6a5ms94nmxj86fzx4ahggrr96cpxyhy8lv"; depends=[]; }; + testthat = derive2 { name="testthat"; version="1.0.2"; sha256="0pj1r01x4ny4capr83dfa19hi5i2sjjxky99schzip8zrq5dzxqf"; depends=[crayon digest magrittr praise R6]; }; + texmex = derive2 { name="texmex"; version="2.3"; sha256="0hh633hlzmjrlind51kjs7s1zpx8bwcwfa93yl4swfvn501j1hy9"; depends=[ggplot2 mvtnorm]; }; + texmexseq = derive2 { name="texmexseq"; version="0.3"; sha256="08zjsb541xqqs3lj7avx5147g2d0bh3v036x615srjx2pbxzhsvg"; depends=[dplyr ggplot2 testthat]; }; + texreg = derive2 { name="texreg"; version="1.36.18"; sha256="1lzjs651b4mmjjgzkbdzdl3nk3g3kd5bzzj7ssfqvbkk7kp6g3rq"; depends=[]; }; + text2vec = derive2 { name="text2vec"; version="0.4.0"; sha256="1ipggg63s16gb72fr7kpmc4z8v6ylp4kw7kb9bk6pccg9iz54i5a"; depends=[data_table digest foreach irlba magrittr Matrix R6 Rcpp RcppParallel]; }; + textTinyR = derive2 { name="textTinyR"; version="1.0.3"; sha256="09wiql4fiw5zzilvfa3y6cqxpgifilf52kvvc7svmjc2abh3afz3"; depends=[BH data_table Matrix R6 Rcpp RcppArmadillo]; }; + textcat = derive2 { name="textcat"; version="1.0-5"; sha256="039bzyz4jvh1hl2a2pfp328kr2mpb1a07j79yqf5cbqk3d5a197b"; depends=[slam tau]; }; + textclean = derive2 { name="textclean"; version="0.3.1"; sha256="1k8wjzzh6nplrnyxq4cd7q4q0sn2fa5p5r2kaq2rd4j9sqrrypp0"; depends=[english qdapRegex stringi textshape]; }; + textgRid = derive2 { name="textgRid"; version="1.0.1"; sha256="1wi5vq5f7ixhz39l5hqi2jlmjjacx4lyrs4h8xfbd47pj6g16lc6"; depends=[]; }; textir = derive2 { name="textir"; version="2.0-4"; sha256="1ky22xar980afyydddahppad9m263mxnrdqpj1fcbmdhg8flwjgz"; depends=[distrom gamlr Matrix]; }; - textmineR = derive2 { name="textmineR"; version="1.6.0"; sha256="1cgpy0hk73jigag4x48ygkvks8k2x3m1amf34li2ffbx2g6066jb"; depends=[lda Matrix Rcpp RcppArmadillo RcppProgress RWeka tm]; }; + textmineR = derive2 { name="textmineR"; version="2.0.4"; sha256="127ngmzvzsb8pbwv6f4k76jv3aqrmpwpbx29cic39m05zxjxxm7k"; depends=[lda Matrix Rcpp RcppArmadillo RcppProgress RSpectra SnowballC stringr text2vec tm topicmodels]; }; + textmining = derive2 { name="textmining"; version="0.0.1"; sha256="16wiykhrjs4djwa7q2wm4g8b3mrhh6hq9d9876w1j7c2s6zx69gd"; depends=[caret dplyr koRpus mallet networkD3 NLP rJava slam SnowballC stylo tm topicmodels wordcloud]; }; textometry = derive2 { name="textometry"; version="0.1.4"; sha256="17k3v9r5d5yqgp25bz69pj6sw2j55dxdchq63wljxqkhcwxyy9lh"; depends=[]; }; + textreadr = derive2 { name="textreadr"; version="0.3.1"; sha256="0l8aiad16m7lgak61lwi7j03mkrzkjvp1fwi8b4xmgfn3mg797zq"; depends=[curl pdftools readxl textshape XML]; }; textreg = derive2 { name="textreg"; version="0.1.3"; sha256="0wp1yybhcybb77aykk9frrylk4kjn0jc98q488195qzx7m5n7ccw"; depends=[NLP Rcpp tm]; }; - textreuse = derive2 { name="textreuse"; version="0.1.2"; sha256="174gh9f4bfgpf8vnwcciq2y70rnzwln5yygzif28x5h960yckv5x"; depends=[assertthat BH digest dplyr NLP Rcpp RcppProgress stringr tidyr]; }; + textreuse = derive2 { name="textreuse"; version="0.1.4"; sha256="0qfp7ffzb5p3k3wiw8i1zjskni8f38rzkjnss97j9f3vhhb8j4r7"; depends=[assertthat BH digest dplyr NLP Rcpp RcppProgress stringr tidyr]; }; + textshape = derive2 { name="textshape"; version="1.0.2"; sha256="0p9n003z98aqk272wcj02z0c5dzaw01iyfbd0fjyccgkidyaz49h"; depends=[data_table slam stringi]; }; + textutils = derive2 { name="textutils"; version="0.1-6"; sha256="0xvsd6pfg4kv40l14xcvmirqiq8rmky4s8v8diagzri3a7i45nqn"; depends=[]; }; tfer = derive2 { name="tfer"; version="1.1"; sha256="19d31hkxs6dc4hvj5495a3kmydm29mhp9b2wp65mmig5c82cl9ck"; depends=[]; }; tfplot = derive2 { name="tfplot"; version="2015.12-1"; sha256="1x007j6ibbzfr0kncvsr4c7295jv3c4amg2dpyjvdir9h665nc23"; depends=[tframe]; }; tframe = derive2 { name="tframe"; version="2015.12-1"; sha256="0k0favda3z6zdg7ykc2nnl28gxz7sfzbyr5pcifiyi984pa2zgfx"; depends=[]; }; - tframePlus = derive2 { name="tframePlus"; version="2015.1-2"; sha256="043ay79x520lbh4jm2nb3331pwd7dvwfw20k1kc9cxbplxiy8pnb"; depends=[tframe timeSeries]; }; - tgcd = derive2 { name="tgcd"; version="1.8"; sha256="0bq2swfz29dl1d745pprx9c3b8nplpb7d64v24nzxrj7yvjfwj90"; depends=[]; }; + tframePlus = derive2 { name="tframePlus"; version="2016.7-1"; sha256="12xi2xw4pr78n3cppfknpxmjp2263pb4kqj9v412yxwp82rgb6yk"; depends=[tframe timeSeries]; }; + tgcd = derive2 { name="tgcd"; version="2.0"; sha256="1553f464jpmngdj8fmbjn9cpmrcp4ysgsfx4w7q4pm4csslsqvlr"; depends=[]; }; tggd = derive2 { name="tggd"; version="0.1.1"; sha256="1izar1b3w148vp2r8gv3vpwfndib8ilxcjxgbfzbxn7q5mr73mwa"; depends=[gsl]; }; tglm = derive2 { name="tglm"; version="1.0"; sha256="1gv33jq3bzd5wlrqjvcfb1ax258q9asawkdi64rbj18qp7fg2dbx"; depends=[BayesLogit coda mvtnorm truncnorm]; }; tgp = derive2 { name="tgp"; version="2.4-14"; sha256="1l3kssjkh5sbrh75qdpmynjfnidgz8vmzq1jml1qm1yfwval8ak1"; depends=[maptree]; }; tgram = derive2 { name="tgram"; version="0.2-2"; sha256="091g6j5ry1gmjff1kprk5vi2lirl8zbynqxkkywaqpifz302p39q"; depends=[zoo]; }; thermocouple = derive2 { name="thermocouple"; version="1.0.2"; sha256="1rlvhw3i83iq1vibli84gj67d98whvgkxafwpmisva1m4s1bmij4"; depends=[]; }; - thgenetics = derive2 { name="thgenetics"; version="0.3-4"; sha256="1316nx0s52y12j9499mvi050p3qvp6b8i01v82na01vidl54b9c2"; depends=[]; }; + thgenetics = derive2 { name="thgenetics"; version="0.3-4.1"; sha256="05g5rwdpnd1b4h1lay2l1s0ns2q6a7sav8d4zrxaqgzhaafnpxyv"; depends=[]; }; + thief = derive2 { name="thief"; version="0.2"; sha256="14xl5l7iw0nwbz5zzd00c8ihfclvhfcazvysr8rapsq1j2r5dfck"; depends=[forecast forecTheta ggplot2 hts]; }; threeboost = derive2 { name="threeboost"; version="1.1"; sha256="033vwn42ys81w6z90w5ii41xfihjilk61vdnsgap269l9l0c8gmn"; depends=[Matrix]; }; - threejs = derive2 { name="threejs"; version="0.2.1"; sha256="01zfv5lm11i2nkb876f3fg8vsff2wk271jqs6xw1njjdhbnnihs1"; depends=[base64enc htmlwidgets]; }; + threejs = derive2 { name="threejs"; version="0.2.2"; sha256="1i8ca99ys0m0njf5f9yhc5rvs9x43mwl98dh74gggq7vj2a99zj1"; depends=[base64enc htmlwidgets jsonlite Matrix]; }; threewords = derive2 { name="threewords"; version="0.1.0"; sha256="083y5i4qyl1wj017wy5ywl2yx9wvrpjl9g9k9clvnrbwzbycx2cg"; depends=[httr]; }; threg = derive2 { name="threg"; version="1.0.3"; sha256="1ja0w4hhdkw3b1cipbpw8ym27k5lh2m7gibd74mj6gij7rpixrnb"; depends=[Formula survival]; }; - thregI = derive2 { name="thregI"; version="1.0.1"; sha256="1ng13f08zj0sglh99ixr0afzwj1fag8b88046bzdzq4vf3vq5v36"; depends=[Formula survival]; }; + thregI = derive2 { name="thregI"; version="1.0.2"; sha256="1r2p4mcj1myay5qgwvdprh3qvb2gzg2lbcci24hfx5c8dmsc39fd"; depends=[Formula survival]; }; thsls = derive2 { name="thsls"; version="0.1"; sha256="18z7apskydkg7iqrs2hgnzby578qsvyd73wx8v4z3aa338lssdi7"; depends=[Formula]; }; - tibble = derive2 { name="tibble"; version="1.0"; sha256="105iammxmhm2mlv3fq0gvrglz6gqyvm4iiiilsvq54fw0z68a4n6"; depends=[assertthat lazyeval Rcpp]; }; - tibbrConnector = derive2 { name="tibbrConnector"; version="1.5.0-71"; sha256="0d8gy126hzzardcwr9ydagdb0dy9bdw30l8s2wwi7zaxx2lpii6q"; depends=[RCurl rjson]; }; + tibble = derive2 { name="tibble"; version="1.2"; sha256="011i352ylq9b4xfcj7h10h7qsqd9qkc1rzc0pr1gf8qjb788p2pd"; depends=[assertthat lazyeval Rcpp]; }; + tibbrConnector = derive2 { name="tibbrConnector"; version="1.5.1"; sha256="1r58myi7x4hqqvyrphxy4ppa1lnad6x2ginfq2j52ax53zr07ajp"; depends=[RCurl rjson]; }; + tictactoe = derive2 { name="tictactoe"; version="0.2.0"; sha256="1n8lbw3g9x1i6rjj3gsyzwnb0ailw9vb6vgr0s0h21c0g1z66a74"; depends=[hash]; }; tictoc = derive2 { name="tictoc"; version="1.0"; sha256="1zp2n8k2ax2jjw89dsri268asmm5ry3ijf32wbca5ji231y0knj7"; depends=[]; }; tidyjson = derive2 { name="tidyjson"; version="0.2.1"; sha256="178lc4ii4vjzvrkxfdf5cd9ryxva9h2vv4wl6xgxgaixkab9yv9w"; depends=[assertthat dplyr jsonlite]; }; - tidyr = derive2 { name="tidyr"; version="0.4.1"; sha256="0xp6lyr2l4ix2mrilx4qmca7wm5qmbhvi24m4nf7qsgwp54gnv2h"; depends=[dplyr lazyeval magrittr Rcpp stringi]; }; + tidyquant = derive2 { name="tidyquant"; version="0.3.0"; sha256="1fn78ibi9c0a14kr54yca489xjac1j58w8g77il61czqq8bn5hdv"; depends=[curl devtools dplyr ggplot2 lubridate magrittr purrr quantmod readr rvest scales stringr tibble tidyr tidyverse timeSeries tseries TTR xml2 xts zoo]; }; + tidyr = derive2 { name="tidyr"; version="0.6.1"; sha256="11hs3gqpbaw3w281as4m7j9n594ix5axfpwbyjsd0l62pwnzj217"; depends=[dplyr lazyeval magrittr Rcpp stringi tibble]; }; + tidytext = derive2 { name="tidytext"; version="0.1.2"; sha256="1pmr7bajlcv2s42qmiz1c6723scqmlfky1ajb7hrp8h3bf7sv0cm"; depends=[broom dplyr hunspell janeaustenr Matrix purrr stringr tokenizers]; }; + tidyverse = derive2 { name="tidyverse"; version="1.1.1"; sha256="1ahxs7xzik27xdbzc1ccrkq5knzrn8xf82x3dhh94xi5c8p3ysqx"; depends=[broom dplyr forcats ggplot2 haven hms httr jsonlite lubridate magrittr modelr purrr readr readxl rvest stringr tibble tidyr xml2]; }; + tidyxl = derive2 { name="tidyxl"; version="0.2.1"; sha256="10b6bl2yr11mzajkzj6xzfyfb0mgglzxm8hpsqxkmd9dp4x96035"; depends=[Rcpp]; }; tiff = derive2 { name="tiff"; version="0.1-5"; sha256="0asf2bws3x3yd3g3ixvk0f86b0mdf882pl8xrqlxrkbgjalyc54m"; depends=[]; }; tiger = derive2 { name="tiger"; version="0.2.3.1"; sha256="0xr56c46b956yiwkili6vp8rhk885pcmfyd3j0rr4h8sz085md6n"; depends=[e1071 hexbin klaR lattice qualV som]; }; - tigerstats = derive2 { name="tigerstats"; version="0.2.7"; sha256="1jgglgdv1xjyyc376ggydvna26lb4f7l7lv82xn56fa8asdssd91"; depends=[abd ggplot2 lattice manipulate MASS mosaic mosaicData]; }; + tigerhitteR = derive2 { name="tigerhitteR"; version="1.1.0"; sha256="0inyi12lf8bn7nbklf2rjixk6wrgrjcp8njv7knai4dgvv7v0rfa"; depends=[Hmisc magrittr openxlsx zoo]; }; + tigerstats = derive2 { name="tigerstats"; version="0.3"; sha256="12wrghipgypkhwwkmaxb6n0qx9fgxk82dc6wlh56rblsvciv2hj0"; depends=[abd ggplot2 lattice manipulate MASS mosaic mosaicData]; }; + tigger = derive2 { name="tigger"; version="0.2.8"; sha256="1qck72fnsivmc8gq8n5c18b6nzxp2kn3vs9kfziqr04hpwhz4266"; depends=[alakazam doParallel dplyr foreach ggplot2 iterators tidyr]; }; tightClust = derive2 { name="tightClust"; version="1.0"; sha256="0psyzk6d33qkql8v6hzkp8mfwb678r95vfycz2gh6fky7m5k3yyz"; depends=[]; }; - tigris = derive2 { name="tigris"; version="0.2.2"; sha256="0pc9fg6p7qsdmq1pjp0mqaxmdqxcskp3hcn6sgabpa40q37gb77z"; depends=[httr magrittr maptools rappdirs rgdal rgeos sp stringr uuid]; }; + tigreBrowserWriter = derive2 { name="tigreBrowserWriter"; version="0.1.4"; sha256="0c733mb2fzskrfa4664w6psp80wdr5hc7f9rp516y59a8rr3xzr0"; depends=[DBI RSQLite]; }; + tigris = derive2 { name="tigris"; version="0.3.3"; sha256="11wpxzh7045n9ss5rjhiz2b6cmgj7rnfwrxwnp9kqf0dcaaqx0hv"; depends=[httr magrittr maptools rappdirs rgdal rgeos sp stringr uuid]; }; tikzDevice = derive2 { name="tikzDevice"; version="0.10-1"; sha256="1fjxzmp9wrf9bigzb4hkp2cb64sd6x4yhrjd6gryw17cqrblhicg"; depends=[filehash png]; }; tileHMM = derive2 { name="tileHMM"; version="1.0-7"; sha256="1ks4b6h15982jh3ls9fz8hq9ac1wf5hfjsvdqcmnba8n3m5zm651"; depends=[corpcor st]; }; + tilegramsR = derive2 { name="tilegramsR"; version="0.1.4"; sha256="1flwi9vxq5l92j47z88s50m6k3av2af43bpcmy8j1xkaygic2dlv"; depends=[sp]; }; + tilting = derive2 { name="tilting"; version="1.1.1"; sha256="0srvxjv3sg35n7f8pam45ny1z1dxwqjkrz9d91hf67a3fi34f5gk"; depends=[mvtnorm]; }; + time2event = derive2 { name="time2event"; version="0.1.0"; sha256="1xkvarw53lcn07wqq7ly5znr6vjq7x72xb0piq5igdmwqmg2y26g"; depends=[survival timereg]; }; timeDate = derive2 { name="timeDate"; version="3012.100"; sha256="0cn4h23y2y2bbg62qgm79xx4cvfla5xbpmi9hbdvkvpmm5yfyqk2"; depends=[]; }; timeROC = derive2 { name="timeROC"; version="0.3"; sha256="0xl6gpb5ayppzp08wwry4i051rm40lzfx43jw2yn3jy2p3nrcakb"; depends=[mvtnorm pec]; }; - timeSeq = derive2 { name="timeSeq"; version="1.0.1"; sha256="054r5lnvl3wj92sx78qwh0mgrcncwqn94ph941knjwnbds4g2arj"; depends=[doParallel edgeR foreach gss lattice pheatmap reshape]; }; + timeSeq = derive2 { name="timeSeq"; version="1.0.2"; sha256="05ncs12afww2apa9sm71x30kjp3ns2l6c5dzrbc2inmy2bss5fy6"; depends=[doParallel foreach gss lattice pheatmap reshape]; }; timeSeries = derive2 { name="timeSeries"; version="3022.101.2"; sha256="0yr5j8w6p0k05g76hjhkrbx3vb166p5916grigc1yag6baj6nsij"; depends=[timeDate]; }; - timedelay = derive2 { name="timedelay"; version="1.0.2"; sha256="15hmby937zf7gs8lhbaxkpdjbg6vrfz7jg41p25mik1d5q8qf2v0"; depends=[mnormt]; }; + timedelay = derive2 { name="timedelay"; version="1.0.5"; sha256="1b3qm46xyrssla11kcxmy9j5bhy9bzcqfvalwny3cgbjmzsc0pa9"; depends=[mnormt]; }; timeit = derive2 { name="timeit"; version="0.2.1"; sha256="0fsa67jyk4yizyd079265jg6fvjsifkb60y3fkkxsqm7ffqi6568"; depends=[microbenchmark]; }; timeline = derive2 { name="timeline"; version="0.9"; sha256="0zkanz3ac6cgsfl80sydgwnjrj9rm7pcfph7wzl3xkh4k0inyjq3"; depends=[ggplot2]; }; + timelineS = derive2 { name="timelineS"; version="0.1.1"; sha256="076w8ckzzl59bc1gnwjgdwynnz86320hyfmzb0k26hl3k13jlmxs"; depends=[dplyr ggplot2 lubridate magrittr]; }; timeordered = derive2 { name="timeordered"; version="0.9.8"; sha256="1j0x2v22ybyl3l9r3aaz5a3bxh0zq81rbga9gh63zads2xy5axmf"; depends=[igraph plyr]; }; - timereg = derive2 { name="timereg"; version="1.8.9"; sha256="12l8sz10ic8d34jd7ik8szg2d51pr949nsss20c5l5g3kfnvqkkh"; depends=[lava numDeriv survival]; }; + timereg = derive2 { name="timereg"; version="1.9.0"; sha256="1rhnbi2gs1pc2nsqcf1qs3x6v1c83l21p1yq8invzgikwdmg4dhy"; depends=[lava numDeriv survival]; }; timesboot = derive2 { name="timesboot"; version="1.0"; sha256="1ixmcigi1bf42np93md8d3w464papg9hp85v0c3hg3vl4nsm2bji"; depends=[boot]; }; timeseriesdb = derive2 { name="timeseriesdb"; version="0.2.1"; sha256="0150zs8c8184jzry33aki21prmpnxp3rclp84q6igwxi4grdhlr0"; depends=[DBI reshape2 RJSONIO RPostgreSQL shiny xts zoo]; }; - timetools = derive2 { name="timetools"; version="1.7.3"; sha256="0mdj2sm72wv3mswfib8svpyai735z59917bk33pzb7rz246g3hb8"; depends=[]; }; + timetools = derive2 { name="timetools"; version="1.9.1"; sha256="12q3lbma8w3961apsifikngm17lw9vj2xl29rygdiizmk61ll4ha"; depends=[]; }; timetree = derive2 { name="timetree"; version="1.0"; sha256="1fpdp6mkwm67svqvkfflvqxn52y2041zl09rxrms28ybbd5f84c0"; depends=[phangorn XML]; }; + timevis = derive2 { name="timevis"; version="0.4"; sha256="08caa5gilh1c0z41lm3ghf6cpnlsdjfm1v7ha73jxv1655kznmpx"; depends=[htmltools htmlwidgets jsonlite magrittr rmarkdown shiny]; }; timma = derive2 { name="timma"; version="1.2.1"; sha256="1pypk0pwkhyilh1hsn8hasia1hf6hbskj0xw6vas03k19b6fjnli"; depends=[QCA Rcpp RcppArmadillo reshape2]; }; - timsac = derive2 { name="timsac"; version="1.3.3"; sha256="0jg9mjzzfl94z4dqb2kz0aiccpclnbyf9p08x3a3cw1y6wqmzrmy"; depends=[]; }; + timsac = derive2 { name="timsac"; version="1.3.5"; sha256="1p2fwizq95fhbw0jk23sy0qgkkkab0iy37sw71krpm0dzrgi6lj0"; depends=[]; }; + tinsel = derive2 { name="tinsel"; version="0.0.1"; sha256="0n1x0cf4x6cq1yks0444nxd9snga4m6inc5lfvb7k96fzjb3xgbp"; depends=[]; }; + tint = derive2 { name="tint"; version="0.0.3"; sha256="1ffysnp2q4g123lgyhjw92j9dwh8b1yfqsrpqfv4s9qnjb6bqr7z"; depends=[htmltools knitr rmarkdown]; }; tipom = derive2 { name="tipom"; version="1.0.2-1"; sha256="1gdfv0g5dw742j6ycmi0baqh6xcchp3yf2n1g8vn7jmqgz5mlhdr"; depends=[]; }; - tis = derive2 { name="tis"; version="1.30"; sha256="0bqvnaxqqq4962wfw4s9rf0qil613mplqcjwjlq1s9yfxl78gzzw"; depends=[]; }; + tis = derive2 { name="tis"; version="1.32"; sha256="1qiywhsqgshs5v7780wlyic9ykxdpf26rsywakmb4y6fc3pjrhi7"; depends=[]; }; titan = derive2 { name="titan"; version="1.0-16"; sha256="0x30a877vj99z3fh3cw9762j5ci56964j2466xfbwcywhn9njz5r"; depends=[boot lattice MASS]; }; titanic = derive2 { name="titanic"; version="0.1.0"; sha256="0mdmh0ciwfig00847bmvp50cyvj8pra6q4i4vdg7md19z5rjlx3j"; depends=[]; }; titrationCurves = derive2 { name="titrationCurves"; version="0.1.0"; sha256="0z127sihd262mdik46sq9vcf05s7jsqmkpm3p4d779viw74bl768"; depends=[]; }; tkrgl = derive2 { name="tkrgl"; version="0.7"; sha256="1kpq5p6izqrn1zr53firis3rmifq9lf6326lf3z7l1p82nf2yps5"; depends=[rgl]; }; tkrplot = derive2 { name="tkrplot"; version="0.0-23"; sha256="1cnyszn3rmr1kwvi5a178dr3074skdijfixf5ln8av5wwcy35947"; depends=[]; }; tlemix = derive2 { name="tlemix"; version="0.1.3"; sha256="0c4mvdxlhbmyxj070xyipx4c27hwxlb3c5ps65ipm6gi8v8r6spj"; depends=[]; }; - tlm = derive2 { name="tlm"; version="0.1.3"; sha256="1jj8yihq4b13wavflkkv91m9ba2l5ar3vcwp1ss6iymyf3hzdgiv"; depends=[boot]; }; + tlm = derive2 { name="tlm"; version="0.1.4"; sha256="041ydlbsn0dxggrvfjfpg2jmns3c4z021f64cl2k1lwmxvqrp265"; depends=[boot]; }; tlmec = derive2 { name="tlmec"; version="0.0-2"; sha256="1gak8vxmfjf05bhaj6lych7bm8hgav1x3h14k2ra7236v82rqbw7"; depends=[mvtnorm]; }; - tlnise = derive2 { name="tlnise"; version="2.0"; sha256="1vh998vqj359249n9zmw04rsivb7nlbdfgzf20pgh2sndm3rh8qz"; depends=[]; }; tm = derive2 { name="tm"; version="0.6-2"; sha256="0q7plaqgc2ypihnz3dyjv2pwa0aimd4kv5i2z6m7aycc4wkmc7j4"; depends=[NLP slam]; }; tm_plugin_alceste = derive2 { name="tm.plugin.alceste"; version="1.1"; sha256="0wid51bbbx01mjfhnaiv50vfyxxmjxw8alb73c1hq9wlsh3x3vjf"; depends=[NLP tm]; }; tm_plugin_dc = derive2 { name="tm.plugin.dc"; version="0.2-8"; sha256="0z843i2wlmx75748p95jz3j45d9bzmlmqa3awgya24k7bdhpd6kd"; depends=[DSL NLP slam tm]; }; - tm_plugin_europresse = derive2 { name="tm.plugin.europresse"; version="1.3"; sha256="04sqaqmi00xm85732sk5iqv6ywfqh52qkkk0wv8xzqxwsixf3hyc"; depends=[NLP tm XML]; }; - tm_plugin_factiva = derive2 { name="tm.plugin.factiva"; version="1.5"; sha256="06s75rwx9fzld1dw0nw6q5phc1h0zsdzhy1dcdcvmsf97d4s2qdr"; depends=[NLP tm XML]; }; - tm_plugin_lexisnexis = derive2 { name="tm.plugin.lexisnexis"; version="1.2"; sha256="0cjw705czzzhd8ybfxkrv0f9kvmv9pcswisc7n9hkx8lxi942h19"; depends=[ISOcodes NLP tm XML]; }; + tm_plugin_europresse = derive2 { name="tm.plugin.europresse"; version="1.4"; sha256="03qi9rkfwgjvir4cjpi9imc8zaldvan42v9lqfr5d6zhr0ajy6wx"; depends=[NLP tm XML]; }; + tm_plugin_factiva = derive2 { name="tm.plugin.factiva"; version="1.6"; sha256="1g4gqhha4936whnir1j31jlcbg9x6jhay7yl1c2pzhldldqj98ih"; depends=[NLP tm XML]; }; + tm_plugin_lexisnexis = derive2 { name="tm.plugin.lexisnexis"; version="1.3"; sha256="056fvhd7m1z7pqmllq2l36v1zm2iwrmii3andhr22894qk99kck1"; depends=[ISOcodes NLP tm XML]; }; tm_plugin_mail = derive2 { name="tm.plugin.mail"; version="0.1"; sha256="0ca2w2p5zv3qr4zi0cj3lfz36g6xkgkbck8pdxq5k65kqi5ndzyp"; depends=[NLP tm]; }; tm_plugin_webmining = derive2 { name="tm.plugin.webmining"; version="1.3"; sha256="1694jidf01ilyk286q43bjchh1gg2fk33a2cwsf5jxv7jky3gl7h"; depends=[boilerpipeR NLP RCurl RJSONIO tm XML]; }; - tmap = derive2 { name="tmap"; version="1.4"; sha256="1krdp213j26xr6a5pdb6a5d2pgx521a718kp2rcrrbw9ifgh4j1q"; depends=[classInt geosphere htmltools htmlwidgets KernSmooth leaflet osmar raster RColorBrewer rgdal rgeos sp spdep XML]; }; + tmap = derive2 { name="tmap"; version="1.8-1"; sha256="193mkyby2rwx917b4bh0fg1ds6hc67ml1ch6wva1dssnkasn2x5i"; depends=[classInt htmltools htmlwidgets leaflet mapview raster RColorBrewer rgdal rgeos sp spdep tmaptools]; }; + tmaptools = derive2 { name="tmaptools"; version="1.2"; sha256="1ljqrajzjl2qcxp55awy79p4d8z4phlkj2kmlqd8fk00lfbig2qp"; depends=[classInt dichromat geosphere KernSmooth magrittr osmar raster RColorBrewer rgdal rgeos rmapshaper sp spdep XML]; }; tmg = derive2 { name="tmg"; version="0.3"; sha256="0yqavibinzsdh85izzsx8b3bb9l36vzkp5a3bdwdbh410s62j68a"; depends=[Rcpp RcppEigen]; }; - tmle = derive2 { name="tmle"; version="1.2.0-4"; sha256="11hjp2vak1zv73326yzzv99wg8a2xyvfgvbyvx3jfxkgk33mybbm"; depends=[SuperLearner]; }; + tmle = derive2 { name="tmle"; version="1.2.0-5"; sha256="06pan7kf1ffs587kayrscqcp4d613ismpzxp8fhfzga02vzvc3a2"; depends=[SuperLearner]; }; tmle_npvi = derive2 { name="tmle.npvi"; version="0.10.0"; sha256="00jav1ql3lv18wh9msxnjvz36z2ds44fdi6lrp1pfphh1in4vdcl"; depends=[geometry MASS Matrix R_methodsS3 R_oo R_utils]; }; tmlenet = derive2 { name="tmlenet"; version="0.1.0"; sha256="1pg9w7yci9j0m1cxi0nwdpp6jwap0b7ql4xkh25kjbq3w5r8w8pr"; depends=[assertthat data_table Matrix R6 Rcpp simcausal speedglm stringr]; }; - tmod = derive2 { name="tmod"; version="0.24"; sha256="1v3yc2x9kchj8mg3h9111g55j2vzz484qx2k3kydsa1a77lv0rdf"; depends=[beeswarm pca3d tagcloud XML]; }; + tmod = derive2 { name="tmod"; version="0.31"; sha256="1qqzngqnj4vk170ild34fpzsnpb1125zisf6xx5hp8q899z88q81"; depends=[beeswarm pca3d plotwidgets tagcloud XML]; }; tmpm = derive2 { name="tmpm"; version="1.0.3"; sha256="1fqk39zyc07gh0ygi7pfljlnj6ih37jsb7bcxm05zcd4796wil8j"; depends=[reshape2]; }; - tmvnsim = derive2 { name="tmvnsim"; version="1.0-1"; sha256="1zl1adx5klhg33j87kx8hqvn7mdyfqi12xxljf29abdqmr4pkp95"; depends=[]; }; + tmvnsim = derive2 { name="tmvnsim"; version="1.0-2"; sha256="03xsvsg9bqvgl98ywid3h91mmlhax5s6wvmypp3hq91vmc5kvxlp"; depends=[]; }; tmvtnorm = derive2 { name="tmvtnorm"; version="1.4-10"; sha256="1w3kmpx25l7rb80vpclqq4pbbv12qgysyqxjq3lp55l9nklkb7qs"; depends=[gmm Matrix mvtnorm]; }; - tnam = derive2 { name="tnam"; version="1.6"; sha256="138jn4qdhk1c0mk43b8n5rr2zb20svli82kj1vkl75gxri0d5i26"; depends=[igraph lme4 network Rcpp sna vegan xergm_common]; }; + tnam = derive2 { name="tnam"; version="1.6.2"; sha256="09wqsqjssnzirx387y2mdd6qa38hlbf1d8s0dwzsz2jxx4w8xp01"; depends=[igraph lme4 network Rcpp sna vegan xergm_common]; }; tnet = derive2 { name="tnet"; version="3.0.14"; sha256="05cc6jrkjbwxzmgzq30h63xzhlgq8f0l3wx2q54vrv0wpvlvfphn"; depends=[igraph survival]; }; toOrdinal = derive2 { name="toOrdinal"; version="0.0-6"; sha256="13mp6sxjbn1piw2q018nb4hznzsa2c7pkvmlv74f8qsjrvvw1h4x"; depends=[]; }; - toaster = derive2 { name="toaster"; version="0.4.2"; sha256="0jz3gi8cblwqgl6kq6glhf2cb6r16davm850gz9s2i5synk4p2v7"; depends=[foreach GGally ggmap ggplot2 ggthemes memoise plyr RColorBrewer reshape2 RODBC scales slam wordcloud]; }; + toaster = derive2 { name="toaster"; version="0.5.5"; sha256="0ga4l3zp422scrgvz701rjznn013vhsbp4gh7v1inqp7kpxafky9"; depends=[foreach GGally ggmap ggplot2 ggthemes memoise network plyr RColorBrewer reshape2 RODBC scales slam wordcloud]; }; + tokenizers = derive2 { name="tokenizers"; version="0.1.4"; sha256="1qcsmcd74i39wql9p49g3pzc4flpi8jq9sxia5mcdx054viijgk9"; depends=[Rcpp SnowballC stringi]; }; tolBasis = derive2 { name="tolBasis"; version="1.0"; sha256="0g4jdwklx92dffrz38kpm1sjzmvhdqzv6mj6hslsjii6sawiyibh"; depends=[lubridate polynom]; }; - tolerance = derive2 { name="tolerance"; version="1.2.0"; sha256="0qvbmv4pq4mczr0ikhha52l0wc6rsb4h9mggsv8dg7g6snrrjb0h"; depends=[rgl]; }; - topicmodels = derive2 { name="topicmodels"; version="0.2-3"; sha256="1jhz4455p1bnw8cm11xnj5w3v1v9dgmzq9zmxl6a4l6x4v12di88"; depends=[modeltools slam tm]; }; + tolerance = derive2 { name="tolerance"; version="1.3.0"; sha256="17qh4ad1f3fbcpwlxxqh8qr9bnwjcl4yxk0l3fkbr6b2l4rc5p86"; depends=[rgl]; }; + topicmodels = derive2 { name="topicmodels"; version="0.2-4"; sha256="0hqgq8lkaj5p4lvjgyyw8vh8j85khqvvrm8vw172dbj997x2izi4"; depends=[modeltools slam tm]; }; topmodel = derive2 { name="topmodel"; version="0.7.2-2"; sha256="1nqa8fnpxcn373v6qcd9ma8qzcqwl2md347yql3c8bpqlm9ggz16"; depends=[]; }; - topologyGSA = derive2 { name="topologyGSA"; version="1.4.5"; sha256="1v6plj7v0i5fr6khl0ls34xc0hfd61cpabqpw5s1z3mqmqnma56a"; depends=[fields graph gRbase qpgraph]; }; + topologyGSA = derive2 { name="topologyGSA"; version="1.4.6"; sha256="0vas7qab5a86jb277ql63qjvfvx7iqqbcrwky7iyr0s8p8p794ia"; depends=[fields graph gRbase qpgraph]; }; topsis = derive2 { name="topsis"; version="1.0"; sha256="056cgi684qy2chh1rvhgkxwhfv9nnfd7dfzc05m24gy2wyypgxj3"; depends=[]; }; tosls = derive2 { name="tosls"; version="1.0"; sha256="03nqwahap504yvcksvxdhykplbzmf5wdwgpzm7svn8bymdc472v2"; depends=[Formula]; }; + touch = derive2 { name="touch"; version="0.1-3"; sha256="1zzc4h6y0xmr3p7jl0vlvn4yswxz5akgvz8laxgmjgqzk926g9jl"; depends=[stringr]; }; tourr = derive2 { name="tourr"; version="0.5.4"; sha256="11xg5slvx7rgyzrc0lzandw7vr7wzk3w2pplsnyrqq3d990qp40d"; depends=[]; }; tourrGui = derive2 { name="tourrGui"; version="0.4"; sha256="1g9928q3x9rrd9k3k84r201wss3vjd2pngvbaflk5dqh9yf75jpq"; depends=[Cairo colorspace gWidgets RGtk2 tourr]; }; + toxboot = derive2 { name="toxboot"; version="0.1.1"; sha256="0sw0mxhcq5k11swlhfpn6xk0nfsambh2yx1721zx75lya27wkmq1"; depends=[data_table tcpl]; }; toxtestD = derive2 { name="toxtestD"; version="2.0"; sha256="0b7hmpfhwg626r8il12shni0kw94cqnbj49y4vfh8gn98x1s6m48"; depends=[]; }; + tpAUC = derive2 { name="tpAUC"; version="2.0.1"; sha256="066fzlkcdma3id56i9qm3bpq9a9lamqkq00qlz7paqxsfph1rn5k"; depends=[pROC]; }; tpe = derive2 { name="tpe"; version="1.0.1"; sha256="0zsa8vb4qmln3sb4lplv43lh50yys9vfd3rxfp6qxqqjxivd0xsh"; depends=[]; }; tpr = derive2 { name="tpr"; version="0.3-1"; sha256="0nxl0m39zaii6rwm35hxcdk6iy2f729jjmhc2cpr8h0mgvgqf19d"; depends=[lgtdl]; }; + tracer = derive2 { name="tracer"; version="1.0.0"; sha256="1jdh4ljcz7d0w2y5miggqkvv397jdx7fn108hbjw93af2gnh698q"; depends=[clisymbols crayon prettycode]; }; tracheideR = derive2 { name="tracheideR"; version="0.1.1"; sha256="1x1jwzgs2aqb3k17mm9mhfhnbwcmilhkjaz9rl40rcg84xjqdrpl"; depends=[tgram]; }; - track = derive2 { name="track"; version="1.1.8"; sha256="0scrww0ba1lrv39fh416wcbzblxnd9f7lp2w24hyp0zbbf1nxs68"; depends=[]; }; - trackeR = derive2 { name="trackeR"; version="0.0.1"; sha256="06c5k7c12nnhy00xly4j0f2hn4wl8i9gm1fiy3q9j6g7hyyrgvx5"; depends=[ggplot2 zoo]; }; - tractor_base = derive2 { name="tractor.base"; version="2.5.0"; sha256="17s4iyp67w7m8gslm87p3ic5r9iq7x1ifpxqrmnin3y5a3d04f5v"; depends=[reportr]; }; + track = derive2 { name="track"; version="1.1.9"; sha256="1d0hab7xyayyhyyrbv8nvpka1kzry4yx10fg8aqwkca3nm7n2q3c"; depends=[]; }; + trackeR = derive2 { name="trackeR"; version="0.0.5"; sha256="0c1wfc41a0n9ldz7mmcss3m2c7lz5wjmv5ifwn9h6ih7wng9d707"; depends=[colorspace fda ggmap ggplot2 gridExtra gtable jsonlite leaflet raster RSQLite scam XML zoo]; }; + tractor_base = derive2 { name="tractor.base"; version="3.0.7"; sha256="19rnsk0v34zlic12839zfp1rrmv7dq4pl1wq5c6hcnsjrbw731wn"; depends=[ore reportr]; }; traitr = derive2 { name="traitr"; version="0.14"; sha256="1pkc8wcq55229wkwb54hg9ndbhlxziv51n8880z6yq73zac1hbmf"; depends=[digest gWidgets proto]; }; traits = derive2 { name="traits"; version="0.2.0"; sha256="0qsnlp96ilwmaimph0bvkjw4kaqd3wpfy6knd7k5s321b68hqaam"; depends=[data_table dplyr httr jsonlite readr rvest taxize xml2]; }; traj = derive2 { name="traj"; version="1.2"; sha256="0mq6xdbxjqjivxyy7cwaghwmnmb5pccrah44nmalssc6qfrgys4n"; depends=[cluster GPArotation NbClust pastecs psych]; }; trajectories = derive2 { name="trajectories"; version="0.1-4"; sha256="0vwfbx5s8ywasxwv8cld4s6r96vlyknxipp49rsfpqn94nawhwnx"; depends=[lattice sp spacetime]; }; + tranSurv = derive2 { name="tranSurv"; version="1.1-4"; sha256="1vsp12x4h0s1lba1kf7n0v71kgm1dz6cjfp8lffm4ps80nahs63l"; depends=[rootSolve SQUAREM survival]; }; transcribeR = derive2 { name="transcribeR"; version="0.0.0"; sha256="0y2kxg2da71i962fhsjxsr2ic3b31fmffhj3gg97b0nykfpcviib"; depends=[httr]; }; translate = derive2 { name="translate"; version="0.1.2"; sha256="1w0xrg1xxwfdanlammmixf06hwq700ssbjlc3cfigl50p87dbc5x"; depends=[functional lisp RCurl RJSONIO]; }; translateR = derive2 { name="translateR"; version="1.0"; sha256="11kh9hjpsj5rfmzybnh345n1gzb0pdksrjp04nzlv948yc0mg5gm"; depends=[httr RCurl RJSONIO textcat]; }; translateSPSS2R = derive2 { name="translateSPSS2R"; version="1.0.0"; sha256="11qnf44aq0dykcsv29faa9r4fcw9cc9rkgczsqx3mngvg3bilada"; depends=[car data_table e1071 foreign Hmisc plyr stringr tidyr zoo]; }; translation_ko = derive2 { name="translation.ko"; version="0.0.1.5.2"; sha256="1w5xibg4znhd39f3i0vsqckp6iia43nblqxnzgj0ny6s7zmdq1wd"; depends=[]; }; - transport = derive2 { name="transport"; version="0.7-3"; sha256="1rgbpj8n88fqw2ivdjhfl9jggazhh7hpalnpfv1rmf96khm76cc0"; depends=[]; }; + transport = derive2 { name="transport"; version="0.8-1"; sha256="1lz5gn9rrg1lyxl6l0r2b0vj4756xq0gb41mfg2darww6b4ifx5v"; depends=[]; }; trapezoid = derive2 { name="trapezoid"; version="2.0-0"; sha256="0f6rwmnn61bj97xxdgbydi94jizv1dbq0qycl60jb4dsxvif8l3n"; depends=[]; }; treatSens = derive2 { name="treatSens"; version="2.0.1"; sha256="0gb14f9dfa9slppl2a2bchkli51rprw6wzyzrkxlfqlski0piymf"; depends=[dbarts]; }; tree = derive2 { name="tree"; version="1.0-37"; sha256="091297qhvqhgjmnyr96jkwaghz8dkbf03rnhwfhks8bsgax6jl13"; depends=[]; }; - treeClust = derive2 { name="treeClust"; version="1.1-1"; sha256="06293w4r1h845jqzdqfnh7w5nsvyz4d0h6nn0w2aj4addj3sbp9y"; depends=[cluster rpart]; }; - treebase = derive2 { name="treebase"; version="0.1.2"; sha256="0rn47gd1kggwwgzxqkjq364l1dcnw8ilqzmnr2cnkyzlx1afk5f3"; depends=[ape RCurl XML]; }; - treeclim = derive2 { name="treeclim"; version="1.0.16"; sha256="0fn79hmn266473ygi0pdkqgcycs7wy2fmvh974xl8bv1rh42sml0"; depends=[abind boot ggplot2 lmodel2 lmtest np plyr Rcpp RcppArmadillo]; }; + treeClust = derive2 { name="treeClust"; version="1.1-6"; sha256="07cw8mnfrkw733ga3aq4am1pj50g8vk0rw6b3lflnb4wdhm2fgbi"; depends=[cluster rpart]; }; + treeHFM = derive2 { name="treeHFM"; version="1.0.3"; sha256="10pyvyyz9ia4dpj8zkil56ipbvbks5xh0n9hkdy0hcinsyq0ba29"; depends=[mclust]; }; + treebase = derive2 { name="treebase"; version="0.1.4"; sha256="1bx31jahb0wy2g8wl1z71vy659lfi8fq1sbbaxvyixzcwymix1wq"; depends=[ape httr RCurl XML]; }; + treeclim = derive2 { name="treeclim"; version="2.0.0"; sha256="0hiba5xc6rp5zzka31k5klmlllpgbnla4pm920zk12jxn796953l"; depends=[abind boot ggplot2 lmodel2 lmtest np plyr Rcpp RcppArmadillo]; }; treecm = derive2 { name="treecm"; version="1.2.2"; sha256="0vrawg4vvy270dn20gb2k99xi4q89l4mjz0mm7ikpz8wxqypzq2l"; depends=[plyr]; }; treelet = derive2 { name="treelet"; version="1.1"; sha256="0k3qhxjg7ws6jfhcvvv9jmy26v2wzi4ghnxnwpjm8nh7b90lbysd"; depends=[]; }; - treemap = derive2 { name="treemap"; version="2.4"; sha256="097w7zn1dkv0whs2hsysvk7c05aj1a862sxnpk8ackdi2rmdj4xa"; depends=[colorspace data_table ggplot2 gridBase igraph RColorBrewer shiny]; }; + treeman = derive2 { name="treeman"; version="1.0"; sha256="0nbcvyqqd75vvms1bvalm7bq59wfg4fdcql7ydhkrjdv0mf0753m"; depends=[plyr]; }; + treemap = derive2 { name="treemap"; version="2.4-2"; sha256="15bdgkdwryb55v82b3hpcx4ykfg5z7zf10h0wwknf6kl1kn34v90"; depends=[colorspace data_table ggplot2 gridBase igraph RColorBrewer shiny]; }; treeperm = derive2 { name="treeperm"; version="1.6"; sha256="0mz7p9khrsq4dbkijymfvlwr01y4fvs0x6si4x5xid16s2zsnmm4"; depends=[]; }; - treeplyr = derive2 { name="treeplyr"; version="0.1"; sha256="0y13m5ky3wyxf2d8np1xrd2ffrh814apyqkhd637mqwj58nnwbgy"; depends=[ape dplyr geiger lazyeval phytools Rcpp]; }; - treescape = derive2 { name="treescape"; version="1.8.15"; sha256="12lhv1qlpj5c8k76zh7mvz3h6xqjp6ri7rfsawz4wzmhzfmagllz"; depends=[ade4 adegenet adegraphics adephylo ape combinat phangorn Rcpp RLumShiny shiny shinyBS shinyRGL]; }; - treethresh = derive2 { name="treethresh"; version="0.1-8"; sha256="1xkbqlr9gkpw6axzl7v5aipackhvy873yrpwn2b9zqr35pj06pr6"; depends=[EbayesThresh wavethresh]; }; - trend = derive2 { name="trend"; version="0.1.0"; sha256="0nxayjs542lszl2vj1xi54fbl8h72rm0k7d92l7w7h7ldvqksiiz"; depends=[]; }; + treeplyr = derive2 { name="treeplyr"; version="0.1.2"; sha256="03bfl7pqhw2isffnfli82bw6la41rfqcshh9dhlbnlwr7yj69m4x"; depends=[ape dplyr geiger lazyeval phytools Rcpp]; }; + treescape = derive2 { name="treescape"; version="1.10.18"; sha256="1vfyqap1696pz212x7jqrga94a8vs61r6fr7vh86nxiayf6fz7b3"; depends=[ade4 adegenet adegraphics adephylo ape combinat distory fields htmlwidgets MASS phangorn Rcpp rgl RLumShiny scatterD3 shiny shinyBS]; }; + treethresh = derive2 { name="treethresh"; version="0.1-9"; sha256="1fmnmfgaysbnqn002zgcm1d2kpzc7is2k2z859hj0h0ll3yjp592"; depends=[EbayesThresh wavethresh]; }; + trelliscope = derive2 { name="trelliscope"; version="0.9.7"; sha256="1hczmi3hjlk1nqd4p2m2hs89a86jrg59rraxw5z5fm0pa92xnzqy"; depends=[base64enc curl data_table datadr digest DistributionUtils ggplot2 hexbin htmltools htmlwidgets jpeg jsonlite lattice png rsconnect shiny]; }; + trelloR = derive2 { name="trelloR"; version="0.1.0"; sha256="0d549yw9pfxs8a3q716z08fzg68bkm5l09cv5iqqkm4gyasrxsf4"; depends=[dplyr httr jsonlite]; }; + trend = derive2 { name="trend"; version="0.2.0"; sha256="0kq2j9rky8kad3rfkwqys2s9hivrqy4yb03q80dvgz856bsh5fiw"; depends=[]; }; triangle = derive2 { name="triangle"; version="0.10"; sha256="02s7iblk3fdrjhz0sns76bqrfwi0y0l6vbjfsb5mzq6pn45n0nkv"; depends=[]; }; + triangulation = derive2 { name="triangulation"; version="0.5.0"; sha256="1zp09g0s0qpqgz2k6jx32pswh2zqyyd0b62lf1dx1p46m28dafkn"; depends=[]; }; trib = derive2 { name="trib"; version="1.2.0"; sha256="0bvz1cvi2fx40b5rdv4gfama11dn20rz4506k4fjsny32yswpqyw"; depends=[zoo]; }; + triebeard = derive2 { name="triebeard"; version="0.3.0"; sha256="1hqyz57gph02c9fdc07lxz113bbklif3g18sw8jan6pakhhdc7dz"; depends=[Rcpp]; }; trifield = derive2 { name="trifield"; version="1.1"; sha256="0xk48fkd5xa3mfn3pwdya0ihpkwnh20sgj3rc7fmzjil47kqscvy"; depends=[]; }; trimTrees = derive2 { name="trimTrees"; version="1.2"; sha256="0v75xf5186dy76332x4w7vdwcz7zpqga8mxrb5all2miq2v45fi8"; depends=[mlbench randomForest]; }; trimcluster = derive2 { name="trimcluster"; version="0.1-2"; sha256="0lsgbg93hm0w1rdb813ry0ks2l0jfpyqzqkf3h3bj6fch0avcbv2"; depends=[]; }; trimr = derive2 { name="trimr"; version="1.0.1"; sha256="0gcn18nwxmax9c35is0nldyh74cw8rg3gj60cixzs9qjnpb9xx3d"; depends=[]; }; trioGxE = derive2 { name="trioGxE"; version="0.1-1"; sha256="1ra86l3i7fhb6nsy8izixyvm6z23shv7fcjmnnpil54995j15ax4"; depends=[gtools mgcv msm]; }; - trip = derive2 { name="trip"; version="1.1-21"; sha256="0rawckw3xd8kz2jn6xgspgl5axabjcp4xh4kp93n3h41xlarv9xa"; depends=[maptools MASS raster sp spatstat]; }; + trip = derive2 { name="trip"; version="1.5.0"; sha256="1qdq3hbqqaa0cmb47ssg3pr3jksni7g4xsc7bsj6wwdw62d9wzf6"; depends=[maptools MASS raster sp spatstat]; }; tripEstimation = derive2 { name="tripEstimation"; version="0.0-44"; sha256="1ylpyzlqr6l5haxq4icnlxw6vgvc2lsfz5sm2wqqm4m6h3p0i6s6"; depends=[lattice mgcv rgdal sp zoo]; }; - tripack = derive2 { name="tripack"; version="1.3-7"; sha256="1kp3zxs1b6mjbrk0bbsz3jjvkxwm97jb0vvr66dpm57abyl1snly"; depends=[]; }; + tripack = derive2 { name="tripack"; version="1.3-8"; sha256="0pf707z6xysxvcs508nadga3mglpvmfk6r061qda8acn58ll1cvb"; depends=[]; }; trotter = derive2 { name="trotter"; version="0.6"; sha256="0i8r2f2klkkfnjm7jhvga3gx6m7r97pd73d88004jzlm9ficspgy"; depends=[]; }; trueskill = derive2 { name="trueskill"; version="0.1"; sha256="0mqvm64fcsxjlh789lqdk6l28q31yhh6jjirwjlgbpxxb90c5107"; depends=[]; }; truncSP = derive2 { name="truncSP"; version="1.2.2"; sha256="1hdi518j3sg9273g01l1jqlmqya3ppim82ma7zakwqpmsjmzw18q"; depends=[boot truncreg]; }; - truncdist = derive2 { name="truncdist"; version="1.0-1"; sha256="0aszs6rz8nydyf2dw1m4fj9fclb0r4vpgqywyaqjkdnhzmyn593g"; depends=[evd]; }; + truncdist = derive2 { name="truncdist"; version="1.0-2"; sha256="02ihw4ixhadwr3sqm6r264i8vpcaz8pn69vkzabd8fwqvn5vcj5q"; depends=[evd]; }; truncgof = derive2 { name="truncgof"; version="0.6-0"; sha256="0b499i9zjwvva5jfl9fj02jjrgy8myxqfjwa0cjg0jrpgxczgwg8"; depends=[MASS]; }; truncnorm = derive2 { name="truncnorm"; version="1.0-7"; sha256="1qac05z50618y4bw1d7yznsli1bv82s0g8h37iacrjrdkv87bmy7"; depends=[]; }; - truncreg = derive2 { name="truncreg"; version="0.2-1"; sha256="0qvdfj93phk1s2p4n0rmpf8x9gj5n1j75h4z424mrg10r24699rd"; depends=[maxLik]; }; + truncreg = derive2 { name="truncreg"; version="0.2-4"; sha256="1rmf1v2khsx82yzyyk51k7fbnbchf21lj9yqrays1z2mx3p1l1fc"; depends=[maxLik]; }; trust = derive2 { name="trust"; version="0.1-7"; sha256="013gmiqb6frzsl6fsb5pqfdapwdxas0llg954hlcvgki9al5mlg3"; depends=[]; }; trustOptim = derive2 { name="trustOptim"; version="0.8.5"; sha256="1y9krw2z5skkwgfdjagl8l04l9sbiqbk1fbxp30wrf4qj3pba5w6"; depends=[Matrix Rcpp RcppEigen]; }; - tsBSS = derive2 { name="tsBSS"; version="0.1"; sha256="1r2hcfki53kvngm1vp209z1aqp082a98jr42bzvxgix62wmh2cfj"; depends=[JADE Rcpp RcppArmadillo]; }; - tsDyn = derive2 { name="tsDyn"; version="0.9-43"; sha256="0fhqfwhac1ac1vakwll41m54l88b1c5y34hln5i1y2ngvhy277l1"; depends=[foreach forecast MASS Matrix mgcv mnormt nnet tseries tseriesChaos urca vars]; }; + tsBSS = derive2 { name="tsBSS"; version="0.2"; sha256="1rnfkrmfmha6pjcsl5zicafj5s2agr048j1rmqficyh3km0kz3i7"; depends=[JADE Rcpp RcppArmadillo]; }; + tsDyn = derive2 { name="tsDyn"; version="0.9-44"; sha256="09vxp2zir0vidzfm57j4cgkigsiyqwvr6ssy15ydfjxha30523a7"; depends=[foreach forecast MASS Matrix mgcv mnormt nnet tseries tseriesChaos urca vars]; }; tsModel = derive2 { name="tsModel"; version="0.6"; sha256="0mkmhzj4g38ngzfcfx0zsiqpxs2qpw82kgmm1b8gl671s4rz00zs"; depends=[]; }; tsPI = derive2 { name="tsPI"; version="1.0.1"; sha256="0sdlcymhljw0di7mi5n4jmgqhfgvqix0jpp07f6wgjbqxkas4wr5"; depends=[KFAS]; }; + tsSelect = derive2 { name="tsSelect"; version="0.1.8"; sha256="0ysijzhhwaj5n7h50jacshnla6d0h61q0f6lj19ic0lwvlz4yazy"; depends=[forecast]; }; tsallisqexp = derive2 { name="tsallisqexp"; version="0.9-2"; sha256="19535zlr6gjg45f8z6hm98pamgn20z19m8qb63997vbj4azsrjfv"; depends=[]; }; tsbridge = derive2 { name="tsbridge"; version="1.1"; sha256="0mry3ia54cdfydpzm8asrq1ldj70gnpb5dqzj51w0jiyps2zlw6f"; depends=[mvtnorm tsbugs]; }; tsbugs = derive2 { name="tsbugs"; version="1.2"; sha256="130v4x6cfy7ddvhijsnvipm4ycrispkj1j0z5f326yb4v5lrk91x"; depends=[]; }; tsc = derive2 { name="tsc"; version="1.0-3"; sha256="1acsdkxizlkix1sskwqv2a80rshw6f14zvcsjhrmmdfd4bmwh36y"; depends=[]; }; - tscount = derive2 { name="tscount"; version="1.0.0"; sha256="0n01biifzjfvnj3zhrn87qigf4l1kij2zfqf6876qz8rps1jz626"; depends=[ltsa]; }; - tseries = derive2 { name="tseries"; version="0.10-34"; sha256="068mjgjcsvgpynkvga8lv430cg8zhlr9frj5yapsxni2vj534pqj"; depends=[quadprog zoo]; }; + tscount = derive2 { name="tscount"; version="1.3.0"; sha256="0zbm096z8nlbk9rd5qkvw5285wpz7qx8avi1md3zv64zmqmny7qa"; depends=[ltsa]; }; + tsdecomp = derive2 { name="tsdecomp"; version="0.2"; sha256="1wy37gjp49dr60s4zhwv19iv3mzr1fjz5yilqmqgy78j5d45ns15"; depends=[]; }; + tsdisagg2 = derive2 { name="tsdisagg2"; version="0.1.0"; sha256="1vjypf9d4rdprpgxfsgpccn412kvar59v341ridq2hcdp7hfb70s"; depends=[]; }; + tseries = derive2 { name="tseries"; version="0.10-38"; sha256="1gs6i28v1v349z7ficzyy9pfrm3aw5x8pldrihm3wg8wvs22jwv5"; depends=[quadprog zoo]; }; tseriesChaos = derive2 { name="tseriesChaos"; version="0.1-13"; sha256="0f2hycxyvcaj3s1lmva1qy46xr6qi43k8fvnm4md5qj8jp2zkazg"; depends=[deSolve]; }; tseriesEntropy = derive2 { name="tseriesEntropy"; version="0.5-12"; sha256="0z9354mlj0nh829ccwwhs53q5myfp31x9n6kv1k8gmvz5xma40kh"; depends=[cubature]; }; tsfa = derive2 { name="tsfa"; version="2014.10-1"; sha256="0gkgl55v08dr288nf8r769f96qri7qbi5src7y6azrykb37nz6iz"; depends=[dse EvalEst GPArotation setRNG tfplot tframe]; }; + tsiR = derive2 { name="tsiR"; version="0.1.0"; sha256="1h14qpg542zr41dr5vrd34aj6ss3z7c4lzvb5bfaha72zbca1l6s"; depends=[ggplot2 kernlab reshape2]; }; tsintermittent = derive2 { name="tsintermittent"; version="1.9"; sha256="1mrb6yrsjwj6j40n97sgg42ddvwhjnaiq9k7ka249bbq01gf2975"; depends=[MAPA]; }; - tsna = derive2 { name="tsna"; version="0.1.3"; sha256="10iflkmc1ym01pvj42gxqsdj3ph44jnqc0j4c42c6xl3365xgdfy"; depends=[ergm network networkDynamic statnet_common]; }; - tsne = derive2 { name="tsne"; version="0.1-2"; sha256="12q5s79r2949zhm61byd4dbgw6sz3bmxzcwr8b0wlp8g1xg4bhy6"; depends=[]; }; - tsoutliers = derive2 { name="tsoutliers"; version="0.6"; sha256="1cyh56i7dsnclphi81fab6k8vkdqv8ing2zmpfsjq4gvq76p7piw"; depends=[forecast KFKSDS polynom stsm]; }; + tsna = derive2 { name="tsna"; version="0.2.0"; sha256="09q01jzj1rnv2f2jf7djnq5xrkp7lvykdbf4bfswsy0f95j0asx2"; depends=[network networkDynamic statnet_common]; }; + tsne = derive2 { name="tsne"; version="0.1-3"; sha256="0s8cv2pndkddq62rzlgzgfdjp1vjv5hz5i5957sllnb97vbzbzb6"; depends=[]; }; + tsoutliers = derive2 { name="tsoutliers"; version="0.6-5"; sha256="1d2m51mlqw4npm7vmbaayj4s3rvsrf33abld947ryqvzi5zrwpim"; depends=[forecast KFKSDS stsm]; }; tspmeta = derive2 { name="tspmeta"; version="1.2"; sha256="028jbbd0pwpbjq4r6jcc1h0p7c4djcb9d2mvgzw1rmpphaxjvrkd"; depends=[BBmisc checkmate fpc ggplot2 MASS splancs stringr TSP vegan]; }; + tswge = derive2 { name="tswge"; version="1.0.0"; sha256="0wj0kyb1dcwfn8wjp7skgcflc48cr4va0i0jg8x970658if7z6fz"; depends=[astsa MASS PolynomF signal waveslim]; }; ttScreening = derive2 { name="ttScreening"; version="1.5"; sha256="0qn8lkvgvqpmm368fwpqkm09yaj9mw42mjlikyiwpv2wrgbpmg9n"; depends=[corpcor limma MASS matrixStats sva]; }; - tth = derive2 { name="tth"; version="4.3-2"; sha256="1gs8xjljklvs0pavvn9f59y09hw7x2da58a46b5x01g08i0j8h1d"; depends=[]; }; - tttplot = derive2 { name="tttplot"; version="1.0"; sha256="0kiahy9f4d6cwzj2k3agrgn12z1fkwmy06ldrl064pbx57ky0wnw"; depends=[]; }; + ttbbeer = derive2 { name="ttbbeer"; version="1.1.0"; sha256="1azffcizm3460kxvrxxkilc6qxspyi247x8drrw5ywfichwhmdhc"; depends=[]; }; + tth = derive2 { name="tth"; version="4.3-2-1"; sha256="19rvmyprl1nk9mmngk6dax8rnli10msfvm3vzp86pbdjxnsh3hjc"; depends=[]; }; + tttplot = derive2 { name="tttplot"; version="1.1.1"; sha256="0rmgp1888y07w0h8kwq1azpr6bysjq4pyjf6ygpra75jj4563wx9"; depends=[]; }; ttutils = derive2 { name="ttutils"; version="1.0-1"; sha256="18mk30070mcplybg320vjbk9v5flxnbqi5gx0yyr1z6ymjmnrxbc"; depends=[]; }; ttwa = derive2 { name="ttwa"; version="0.8.5.1"; sha256="1lhypcwssq0dspizvln3w4dg16ad6mz8cj4w34c5vsrayqid7fyn"; depends=[data_table]; }; - tuber = derive2 { name="tuber"; version="0.2"; sha256="1frxjk1yzzcn7sza21qn2905z60vpi9b142jxnslncm2dpd2fh65"; depends=[httr]; }; + tuber = derive2 { name="tuber"; version="0.7.0"; sha256="1fcls8q4ihz50wnar87047i8il32a1nrxw67nv9wjqfi02z74c2p"; depends=[httr plyr]; }; tufte = derive2 { name="tufte"; version="0.2"; sha256="0yh5xdxapqpf5hgdn8c2jkk63817l2w6bxavw8457r89rnj1022p"; depends=[htmltools knitr rmarkdown]; }; tufterhandout = derive2 { name="tufterhandout"; version="1.2.1"; sha256="04fvvbx69a28nk7i4wz5ynamz1yvsa2ibz542r1xaq1ikk0ywqbw"; depends=[knitr rmarkdown]; }; tumblR = derive2 { name="tumblR"; version="1.1"; sha256="0gl6q6rff9bp21gvi3bz8kmwbhimxqrv1mmzwshl1ys9r7d4dvps"; depends=[httr RCurl RJSONIO stringr]; }; tumgr = derive2 { name="tumgr"; version="0.0.4"; sha256="1ylfmrsg177g75l2scjpgw6v4dpz62r7cy89pql9zd5zqy167xqj"; depends=[minpack_lm]; }; - tuneR = derive2 { name="tuneR"; version="1.2.1"; sha256="1f6mdkfwfy6r62sbwq37sylvcji6f3mj9w13sgicxjn6swbszf57"; depends=[signal]; }; + tuneR = derive2 { name="tuneR"; version="1.3.1"; sha256="0m0fc8bx7645ddbcsvgwamfsd7rklz05wi8yc9p0kf2k5sbn48r3"; depends=[signal]; }; tuple = derive2 { name="tuple"; version="0.4-02"; sha256="0fm8fsdfiwknjpc20ivi5m5b19r9scdxhzij70l8qi3ixw1f0rnk"; depends=[]; }; turboEM = derive2 { name="turboEM"; version="2014.8-1"; sha256="0g9nm1m542hslz8272n5qz6h59criyf71l2w218dvq34bcjcd3yy"; depends=[doParallel foreach iterators numDeriv quantreg]; }; turfR = derive2 { name="turfR"; version="0.8-7"; sha256="007jmkppfv1x4zzvvd65fhg5k15ybjhsya2zfjgwm77wm34y81ca"; depends=[dplyr]; }; turner = derive2 { name="turner"; version="0.1.7"; sha256="1xckb750hbfmzhvabj0lzrsscib7g187b44ag831z58zvawwh772"; depends=[tester]; }; - tutorial = derive2 { name="tutorial"; version="0.2.2"; sha256="0594pgjkx2y14gy54vfccwn30w2szdq1q4l85frjbjf7k2z88x4b"; depends=[markdown rmarkdown]; }; + tutorial = derive2 { name="tutorial"; version="0.4.3"; sha256="0sxdlpw0w4azlaxdlk36ycrric6pbj2zi4nyv26pgsp0cr1hrx6r"; depends=[base64enc knitr markdown rjson]; }; tvd = derive2 { name="tvd"; version="0.1.0"; sha256="07al7gpm81a16q5nppsyc5rhv6zzkcvw72isx955b1q189v073aw"; depends=[Rcpp]; }; tvm = derive2 { name="tvm"; version="0.3.0"; sha256="1iv0qrks1zdiq8jaqr1h46snq8wc3g3q017hxc8zc6fqnsz1whf6"; depends=[ggplot2 reshape2]; }; - twang = derive2 { name="twang"; version="1.4-9.3"; sha256="06lgawzq3b2jg84rvg24582ndlk8qji4gcbvxz5acf302cvdnmji"; depends=[gbm lattice latticeExtra survey xtable]; }; - tweedie = derive2 { name="tweedie"; version="2.2.1"; sha256="1fsi0qf901bvvwa8bb6qvp90fkx1svzswljlvw4zirdavy65w0iq"; depends=[]; }; - tweenr = derive2 { name="tweenr"; version="0.1.2"; sha256="1s1q9adqdff79bpr2ypfzbsh51kmzqxk2082s49pw5kmina6bacs"; depends=[Rcpp]; }; - tweet2r = derive2 { name="tweet2r"; version="0.4.1"; sha256="0g2y6bs9211wrn8gaqxcrzka27aqh2wcxi00faqkw61pypy4fyxg"; depends=[ggmap ggplot2 plyr rgdal ROAuth RPostgreSQL RSQLite sp streamR]; }; + twang = derive2 { name="twang"; version="1.4-9.5"; sha256="1haj2aj14n0bk2gf00afrqan67986c8l75ps6ig505c2i0z4ivqd"; depends=[gbm lattice latticeExtra survey xtable]; }; + tweedie = derive2 { name="tweedie"; version="2.2.5"; sha256="1n08xdkqklh020zwgkkj6wbf7gyjghjl5wbs0xj83zi9jcmn08sn"; depends=[]; }; + tweenr = derive2 { name="tweenr"; version="0.1.5"; sha256="06h0vhxlljmvxg4a62sqrq53lpbvl5w19dqcpyw1jqvrb5agidnq"; depends=[Rcpp]; }; + tweet2r = derive2 { name="tweet2r"; version="1.0"; sha256="0v7xshk389k3aws72ww9kqc2ycw6l6q9xmhps47g3bdl64jy8bay"; depends=[ggmap ggplot2 maptools plyr rgdal ROAuth RPostgreSQL RSQLite sp spacetime spatstat splancs streamR]; }; twiddler = derive2 { name="twiddler"; version="0.5-0"; sha256="0r16nfk2afcw7w0j0n3g0sjs07dnafrp88abwcqg3jyvldp3kxnx"; depends=[]; }; twitteR = derive2 { name="twitteR"; version="1.1.9"; sha256="1hh055aqb8iddk9bdqw82r3df9rwjqsg5a0d2i0rs1bry8z4kzbr"; depends=[bit64 DBI httr rjson]; }; twoStageGwasPower = derive2 { name="twoStageGwasPower"; version="0.99.0"; sha256="1xvy6v444v47i29aw54y29xiizkmryv8p3mjha93xr3xq9bx2mq7"; depends=[]; }; twostageTE = derive2 { name="twostageTE"; version="1.3"; sha256="0mkxs3lmzja51zdrf5himhwcdygpj6czhdd2bydakm26kvw7znwr"; depends=[isotone]; }; txtplot = derive2 { name="txtplot"; version="1.0-3"; sha256="1949ab1bzvysdb79g8x1gaknj0ih3d6g63pv9512h5m5l3a6c31h"; depends=[]; }; + types = derive2 { name="types"; version="1.0.0"; sha256="01shcin8wjbhbmzl979fj3008xqxssw90g3bjg42cnjxkmnaql59"; depends=[]; }; + uHMM = derive2 { name="uHMM"; version="1.0"; sha256="1516ipadxi7rc1dbinr5rva2fbcr5i2zg3rlli5wy7r6naf8fzzl"; depends=[chron class cluster clValid corrplot FactoMineR HMM tcltk2 tkrplot]; }; + uaparserjs = derive2 { name="uaparserjs"; version="0.1.0"; sha256="1zhz39jrvi64sj0wvwkm4y8gakfp6kz1knw4wn08kk4fa9ymyjvq"; depends=[dplyr purrr V8]; }; + ubeR = derive2 { name="ubeR"; version="0.1.4"; sha256="1ilclna04hd1ykcp2b3gcj0v4qznwx0d24yavxnf2yh5d91wr6z2"; depends=[dplyr ggmap ggplot2 ggthemes googleway httpuv httr jsonlite]; }; ucbthesis = derive2 { name="ucbthesis"; version="1.0"; sha256="0l855if3a7862lxlnkbx52qa617mby634sbb2gkprj21rwd7lcbp"; depends=[knitr stringr]; }; - ucminf = derive2 { name="ucminf"; version="1.1-3"; sha256="19gmbz32rhrdagvhf2s901lvi1r6273wzznry5daryq6w1jx5z3v"; depends=[]; }; - udunits2 = derive2 { name="udunits2"; version="0.8.1"; sha256="0nind45v0ispwz0fgksw64w4y5y6za0r3cx07j02zwg911n32r7c"; depends=[]; }; + ucminf = derive2 { name="ucminf"; version="1.1-4"; sha256="01vggwg1w71k98qs6fhb0x1843vi322mf4g3hbclks94kcpkisx2"; depends=[]; }; + udapi = derive2 { name="udapi"; version="0.1.0"; sha256="0hwnrx9qkazja288m6irmwwybiys9npk6sk60acjdczsfrn1hvl0"; depends=[curl httr]; }; + udunits2 = derive2 { name="udunits2"; version="0.13"; sha256="0yav7rm2afcx67xqrknybxgz7x63w78zyxa0xifvc0k2gz0d6mfi"; depends=[]; }; + uiucthemes = derive2 { name="uiucthemes"; version="0.1.1"; sha256="0d1agg94z0qy6k4pbv01p1xb0zh42gkjl5i9kbqblplnk2swkzyi"; depends=[rmarkdown]; }; ukgasapi = derive2 { name="ukgasapi"; version="0.13"; sha256="0bnblha96ldbxj0nqhcj26d1dk2xm6nkjqqval1jlc2pki20mr9n"; depends=[RCurl XML]; }; ump = derive2 { name="ump"; version="0.5-6"; sha256="1nd6miz9scc6llckafl73pxiqh0ycfhlsmn2l0swcvjxpj3kb0zv"; depends=[]; }; - umx = derive2 { name="umx"; version="1.1.5"; sha256="13diwb8p51vh14pb705sbdn2994ha4dfx20s45aj38sqz7igz2x4"; depends=[knitr MASS Matrix mvtnorm numDeriv OpenMx polycor R2HTML RCurl]; }; + umx = derive2 { name="umx"; version="1.5.0"; sha256="0b011ym5hai9c7r1lgr9y3yhscrwq77h6q6llkhklkz35qbz4056"; depends=[DiagrammeR knitr MASS Matrix mvtnorm numDeriv OpenMx polycor R2HTML RCurl sfsmisc]; }; unbalanced = derive2 { name="unbalanced"; version="2.0"; sha256="18hy9nnq42s1viij0a5i9wzrrfmmbf7y3yzjzymz2wnrx4f2pqwv"; depends=[doParallel FNN foreach mlr RANN]; }; unbalhaar = derive2 { name="unbalhaar"; version="2.0"; sha256="0v6bkin1cakwl9lmv49s0jnccl9d6vdslbi1a7kfvmr5dgy760hs"; depends=[]; }; - unfoldr = derive2 { name="unfoldr"; version="0.3"; sha256="1zc2a4c228lhflsiypn8z6yn3fl0hr3dpmpzdxfrrijzbfai9215"; depends=[]; }; + unfoldr = derive2 { name="unfoldr"; version="0.6"; sha256="1chxd6b353s56rl78wxr8zzh2vvnj7wbjl6xnakhcchcfqr4zjqd"; depends=[]; }; + ungeneanno = derive2 { name="ungeneanno"; version="0.1.6"; sha256="0fm47vmzn4z73pn37p94r84lbkg5amk0sl78304ibwz0rhlda0y5"; depends=[httr XML]; }; uniCox = derive2 { name="uniCox"; version="1.0"; sha256="1glgk6k8gwxk3haqaswd2gmr7a2hgwjkwk2i1qc5ya7gg8svyavv"; depends=[survival]; }; - uniReg = derive2 { name="uniReg"; version="1.0"; sha256="1xl19dqnxxibgiiny9ysll2z8j1i70qrszf4xbacq1a6z31vm840"; depends=[DoseFinding MASS mvtnorm quadprog SEL]; }; - uniah = derive2 { name="uniah"; version="0.4"; sha256="1ryfqkry06xhvjls6hrnggd43x4kbah38xxgrb7bjcwl1r25y2n0"; depends=[ahaz Iso survival]; }; + uniReg = derive2 { name="uniReg"; version="1.1"; sha256="0wjc7pgaisvk26j7grxp2ypsabb5my9wg6c9i5w9zhh5jdx1fdab"; depends=[DoseFinding MASS mvtnorm quadprog SEL]; }; + uniah = derive2 { name="uniah"; version="1.0"; sha256="19zwy33gwa749i81mi9h05k8k3l4xbbln3k6q70fa7ic5lqbbdzj"; depends=[ahaz Iso survival]; }; uniftest = derive2 { name="uniftest"; version="1.1"; sha256="0a37m7l3lc6rznx10w9h9krnn5paim2i2wvw47ckwag7bv0d4pm4"; depends=[orthopolynom]; }; uniqtag = derive2 { name="uniqtag"; version="1.0"; sha256="025q71mzdv3n1jw1fa37bbw8116msnfzcia01p1864si04ch5358"; depends=[]; }; uniqueAtomMat = derive2 { name="uniqueAtomMat"; version="0.1-2"; sha256="15d6s44n1cvhpjsmwjly3nqq7q2zpi2ws6cw5jrxb97gacma896n"; depends=[]; }; unitedR = derive2 { name="unitedR"; version="0.2"; sha256="0glcyji0cypb2687cvyra0zzlzbq0md7qb60abgi0199hf51q3dj"; depends=[plyr]; }; + units = derive2 { name="units"; version="0.4-2"; sha256="0c7nys38157wimmqqz7hglar343nfqkvbaf0bl6by5lbql0kj2vq"; depends=[udunits2]; }; unittest = derive2 { name="unittest"; version="1.2-0"; sha256="1g3f36kikxrzsiyhwpl73q2si5k28drcwvvrqzsqmfyhbjb14555"; depends=[]; }; unmarked = derive2 { name="unmarked"; version="0.11-0"; sha256="0n5cm17ns464dxd9sdma6f12x1phnvv05aiwgxsj499lk6jazf0l"; depends=[lattice plyr raster Rcpp RcppArmadillo reshape]; }; + unpivotr = derive2 { name="unpivotr"; version="0.1.0"; sha256="01pbmfm94i4z0xx7lj9pipw88d5szqgqa6j23m4i8cv8kx48r3p7"; depends=[data_table dplyr dtplyr lazyeval magrittr purrr tibble tidyr]; }; + unsystation = derive2 { name="unsystation"; version="0.1.1"; sha256="0w5llr2kyv7g5fx5yvlyqwj4da5k5fq1f2y70c9pjdzrny9lpz4q"; depends=[doParallel foreach iterators Rcpp RcppArmadillo]; }; untb = derive2 { name="untb"; version="1.7-2"; sha256="1ha0xj94sz1r325qb4sb5hla9hw1gbqr76703vk792x9696skhji"; depends=[Brobdingnag partitions polynom]; }; + unvotes = derive2 { name="unvotes"; version="0.1.0"; sha256="128jp2iin0xb7xr21s4sd6yprgzc0qssjbhz3vcslbwfl3jp2ch0"; depends=[]; }; upclass = derive2 { name="upclass"; version="2.0"; sha256="0jkxn6jgglw6pzzbcvi1pnq4hwfach3xbi13zwml4i83s3n5b0vg"; depends=[mclust]; }; uplift = derive2 { name="uplift"; version="0.3.5"; sha256="11xikfmg6dg8mhwqq6wq9j9aw4ljh84vywpm9v0fk8r5a1wyy2f6"; depends=[coin MASS penalized RItools tables]; }; + upmfit = derive2 { name="upmfit"; version="0.1.0"; sha256="0f0rk606v17abgw3mwlwihl6fsxprp44h2xbhv1675i18i36vbgx"; depends=[mcmcplots R2jags]; }; uptimeRobot = derive2 { name="uptimeRobot"; version="1.0.0"; sha256="1sbr0vs6jqcyxjbs7q45bsfdnp3bc59phw0h3fwajqq1cxjgzdww"; depends=[plyr RCurl rjson]; }; - urca = derive2 { name="urca"; version="1.2-9"; sha256="0x4mrqqr3hfgf3vy60wz4dngy188di8xccryhck9jqjryzj35i6g"; depends=[nlme]; }; - urltools = derive2 { name="urltools"; version="1.3.2"; sha256="0kzjvvllzp51jnvxh70hilh843shi73jxjq2cg8sq6zbp22wv75q"; depends=[Rcpp]; }; - uroot = derive2 { name="uroot"; version="2.0-5"; sha256="1402s52924vas3h37sb6q3qqff9kk79ynq6s3hgz200klxlbvyxk"; depends=[]; }; + uqr = derive2 { name="uqr"; version="0.2.0"; sha256="03v12w1ssfpp3h2aja4wlv6f2x1rplpm3dpmrq78bpyanban2gwf"; depends=[gtools Hmisc]; }; + urca = derive2 { name="urca"; version="1.3-0"; sha256="1akaqwf3fvvvx4sgfn641fd4sj51s0701pvfl6s5hnz2k0iwh732"; depends=[nlme]; }; + urlshorteneR = derive2 { name="urlshorteneR"; version="0.9.2"; sha256="1y5n1rn2c7yj5ncxfnsrj9lvaam2j3vvx8ld1vqyjay1r8flzifd"; depends=[httr jsonlite stringr]; }; + urltools = derive2 { name="urltools"; version="1.6.0"; sha256="1vyv88x5l0hr4jhn7sics11g8j6817gn4yjpk58b40ynija42kkb"; depends=[Rcpp triebeard]; }; + uroot = derive2 { name="uroot"; version="2.0-9"; sha256="0nxc8d4v9v5z3wbnj325iq2yrh0mipqgg2rn8pp2jyyq9vb1cxlv"; depends=[]; }; usdm = derive2 { name="usdm"; version="1.1-15"; sha256="1638fv8if7pcnm6y44w3vbmivgcg4a577zd2jwhmp00vrwml2a9m"; depends=[raster sp]; }; - useful = derive2 { name="useful"; version="1.2.0"; sha256="0k701namh9svdb9ag33vr44af9g07nnd8mqrcd8zm512a6clmyx9"; depends=[dplyr ggplot2 magrittr plyr scales]; }; - userfriendlyscience = derive2 { name="userfriendlyscience"; version="0.4-1"; sha256="1nfj7rydrjwpxvqxxa4996957r2d618h49jy6554f2k3ih0bryaj"; depends=[car fBasics foreign GGally ggplot2 GPArotation gridExtra knitr lavaan MASS MBESS mosaic plyr psych pwr SCRT SuppDists xtable]; }; - uskewFactors = derive2 { name="uskewFactors"; version="1.0"; sha256="1ixcxqw8ai77ndn1cfkq53a090fgs95yzvas1qg2siwpfsm4yix6"; depends=[MASS MCMCpack mvtnorm tmvtnorm]; }; - usl = derive2 { name="usl"; version="1.5.0"; sha256="09gv2r44nnyvf2pvdqmk7whqvivvs67w5lk8kw72zb8y6gsjag57"; depends=[nlmrt]; }; + useful = derive2 { name="useful"; version="1.2.1"; sha256="08ihyvyjrdrfba7zasqkg4204nmql4xgwigzs80dks51bpqcq2mv"; depends=[dplyr ggplot2 magrittr plyr scales]; }; + userfriendlyscience = derive2 { name="userfriendlyscience"; version="0.5-2"; sha256="0i5nrfq7hgq3rx43s6p8bxc4yqqjkvn42bbyv6hndzkagp06d2vj"; depends=[car diptest fBasics GGally ggplot2 ggrepel GPArotation gridExtra knitr lavaan MASS MBESS mosaic pander plyr psych pwr RColorBrewer rio scales SCRT SuppDists XML xtable]; }; + uskewFactors = derive2 { name="uskewFactors"; version="2.0"; sha256="0ndi5987ak8sa7krgiglsibfg0k7z9j8fg47hg1m8ar0sq4r1yj6"; depends=[MASS MCMCpack mvtnorm tmvtnorm]; }; + usl = derive2 { name="usl"; version="1.7.0"; sha256="116h8yfij7fkzd8va5w8v977fj2is86vlwzfnv28g3h0avdwysls"; depends=[nlmrt]; }; + usmap = derive2 { name="usmap"; version="0.1.0"; sha256="1v255hl31rhzzggilnxsy30hwwbhsmsl6wyj3qnhxkygbnax7ncd"; depends=[]; }; ustyc = derive2 { name="ustyc"; version="1.0.0"; sha256="1267bng2dz3229cbbq47w22i2yq2ydpw26ngqa1nbi3ma6hwqsv4"; depends=[plyr XML]; }; - utility = derive2 { name="utility"; version="1.3"; sha256="0ng7jc45k9rgj9055ndmgl308zjvxd2cjsk2pn57x44rl1lldcj5"; depends=[]; }; + utf8latex = derive2 { name="utf8latex"; version="1.0.4"; sha256="12isrl056h7y7nr7wk52dnvf3frcp66qqy7si869ark2aj81f959"; depends=[]; }; + utility = derive2 { name="utility"; version="1.4"; sha256="088dgi0ybpcrk6g11fs500ymzwshbypikgjy6hxnx79byiwhrscp"; depends=[]; }; + utiml = derive2 { name="utiml"; version="0.1.1"; sha256="118wa66s3cfp00yc9nngf7khaaswrrfj5pb71n66lnxwynf8mdgm"; depends=[mldr]; }; uuid = derive2 { name="uuid"; version="0.1-2"; sha256="1gmisd630fc8ybg845hbg13wmm3pk3npaamrh5wqbc1nqd6p0wfx"; depends=[]; }; + uwIntroStats = derive2 { name="uwIntroStats"; version="0.0.3"; sha256="1m8n6bans7kkwriqky92vvv2sbdacyq2pvbv2m5p37q7qk5215c2"; depends=[Exact geepack plyr sandwich survival]; }; vacem = derive2 { name="vacem"; version="0.1-1"; sha256="0lh32hj4g1hsa45v6pmfyj1hw0klk8gr1k451lvs4hzpkkcwkqbn"; depends=[foreach]; }; - validate = derive2 { name="validate"; version="0.1.3"; sha256="1bnxqi9af807g8y81sdgag27c206kgl1f3kmsbdaxigch61472sw"; depends=[settings yaml]; }; + vaersNDvax = derive2 { name="vaersNDvax"; version="1.0.4"; sha256="0hvw7vbxs87c9xkdv3617fkjwz2dbawscbd7dgaixhdhcr3k823a"; depends=[]; }; + vaersvax = derive2 { name="vaersvax"; version="1.0.4"; sha256="15znkwbhr624qgwlcrdhaxpdfl85ym845mr2sy8b016d3ngz7n94"; depends=[]; }; + validann = derive2 { name="validann"; version="1.2.0"; sha256="1g8svbxyy56kmzm8yxwk9jqwnwsmlvxm87ss7l88arjl5kqgvasq"; depends=[moments]; }; + validate = derive2 { name="validate"; version="0.1.5"; sha256="166605h47bgcx1sf1rlvvgay00v8ykzw55zbfc5jnw9h8j8f7wsb"; depends=[settings yaml]; }; validateRS = derive2 { name="validateRS"; version="1.0.0"; sha256="1ivw9ddr6z2wrsqvhbn87p5pikhkxlz8p45pb5nq13dvs359vkww"; depends=[data_table reshape2 triangle truncnorm]; }; + validatejsonr = derive2 { name="validatejsonr"; version="1.0.4"; sha256="1n8jf7j3hvz47z1x3gqz5yj5wxfjzz0zgzkgckdvy1nbsqf7w3cr"; depends=[Rcpp]; }; + valorate = derive2 { name="valorate"; version="1.0-1"; sha256="06vczszpkipsxfs7h6ld33vvxb5ci62rwg3cglwy3lcfifhbnsfi"; depends=[survival]; }; valottery = derive2 { name="valottery"; version="0.0.1"; sha256="0rlv8agm9ng4jcb9ixqifh7kjczvkx7047brq8yf9kg7rb8mzgpz"; depends=[]; }; + valr = derive2 { name="valr"; version="0.1.1"; sha256="0pzkaljlwqpk7n6z4f5lvy2f06a1bjsj6b20sxpd64rh302vn6hi"; depends=[BH broom dplyr ggplot2 lazyeval purrr Rcpp readr shiny stringr tibble tidyr]; }; + valuer = derive2 { name="valuer"; version="1.1.1"; sha256="1pvzhx5irxww6vb8j4nsanlzgwaa4z96vw4l97h6l27h1403gdkb"; depends=[ggplot2 orthopolynom R6 Rcpp RcppEigen timeDate yuima]; }; varComp = derive2 { name="varComp"; version="0.1-360"; sha256="18xazjx102j6v1jgswxjdqjb0hq6hd646yhwb7bcplqyls9hzha0"; depends=[CompQuadForm MASS Matrix mvtnorm nlme quadprog RLRsim SPA3G]; }; + varSel = derive2 { name="varSel"; version="0.1"; sha256="0ddj3swfxzchs75kfi6h25h3c33hpapnd5kcwcijnqhlh902b1r0"; depends=[]; }; varSelRF = derive2 { name="varSelRF"; version="0.7-5"; sha256="1800d9vvkqpxjvmiqdr610hw7ji79j0wsbl823s097dndmv51axk"; depends=[randomForest]; }; - varbvs = derive2 { name="varbvs"; version="1.0"; sha256="0ywgb6ibijffjjzqqb5lvh1lk5qznwwiq7kbsyzkwcxbp8xkabjw"; depends=[]; }; + varband = derive2 { name="varband"; version="0.9.0"; sha256="16z66rx7xq5zan8pnw100c9r5syw1ml4hgzi9mch52aia23v21p9"; depends=[Rcpp RcppArmadillo]; }; + varbvs = derive2 { name="varbvs"; version="2.0.0"; sha256="1bi11qcgnw263p1vv25nhcf9b0vf04bl6hpb9agw1rp1f7c9xsrb"; depends=[lattice latticeExtra]; }; vardiag = derive2 { name="vardiag"; version="0.2-1"; sha256="07i0wv84sw035bpjil3cfw69fdgbcf2j8wq4k22narkrz83iyi2z"; depends=[]; }; - varhandle = derive2 { name="varhandle"; version="1.0.0"; sha256="1bpnzgx7gz95pgn13w7z5gq2lyhm549mc5697kx0625hpk13gddj"; depends=[]; }; + vardpoor = derive2 { name="vardpoor"; version="0.8.4"; sha256="1w2l3pz4qwsx376wd4vzkfs1xajsy10fkkhmn7gmvrvi899afmh3"; depends=[data_table foreach gdata laeken MASS plyr stringr surveyplanning]; }; + varhandle = derive2 { name="varhandle"; version="2.0.1"; sha256="06n13dyq41dr0gsq2bzkqqraqqkab93n7gimln4ckkdnrv0a1crx"; depends=[]; }; variables = derive2 { name="variables"; version="0.0-30"; sha256="182c8c7cwkmrpk01bki94y6f3wgf2zdjvvcfa4paa6bfq8w9ckh3"; depends=[]; }; varian = derive2 { name="varian"; version="0.2.2"; sha256="0jyw46qx2w19h02mrwv3w3n8qc1n4b3ckm38qly1y4a4w9ib6c2i"; depends=[Formula ggplot2 gridExtra MASS rstan]; }; vars = derive2 { name="vars"; version="1.5-2"; sha256="1q45z5b07ww4nafrvjl48z0w1zpck3cd8fssgwgh4pw84id3dyjh"; depends=[lmtest MASS sandwich strucchange urca]; }; - vartors = derive2 { name="vartors"; version="0.2.6"; sha256="04dynqs903clllk9nyynh3dr7msxn5rr5jmw6ql86ppd5w3da0rl"; depends=[]; }; vbdm = derive2 { name="vbdm"; version="0.0.4"; sha256="1rbff0whhbfcf6q5wpr3ws1n4n2kcr79yifcni12vxg69a3v6dd3"; depends=[]; }; vbsr = derive2 { name="vbsr"; version="0.0.5"; sha256="1avskbxxyinjjdga4rnghcfvd4sypv4m39ysfaij5avvmi89bx3b"; depends=[]; }; - vcd = derive2 { name="vcd"; version="1.4-1"; sha256="1529q8gysqzpgphsnqdwqqr630i4k1kr0zdbmxqq5wpy5r97fk5g"; depends=[colorspace lmtest MASS]; }; + vcd = derive2 { name="vcd"; version="1.4-3"; sha256="05azric2w8mrsdk7y0484cjygcgcmbp96q2v500wvn91fj98kkhp"; depends=[colorspace lmtest MASS]; }; vcdExtra = derive2 { name="vcdExtra"; version="0.7-0"; sha256="0ggkv0khn9h6b787dnmkk38fkxgp84k4nn1c3gm12i7n47r58ygr"; depends=[ca gnm MASS vcd]; }; - vcfR = derive2 { name="vcfR"; version="1.0.0"; sha256="0dlypblqa966lgcib3w6sw357w1mdq3nlp9f0c6846alh952j4v4"; depends=[ape memuse Rcpp]; }; - vcrpart = derive2 { name="vcrpart"; version="0.4-1"; sha256="1wrbjxh4kvz6yll9d002y3vpz9p8fa1lmqqvyz3w2nnwq4s9r4hc"; depends=[nlme numDeriv partykit rpart sandwich strucchange ucminf zoo]; }; - vdg = derive2 { name="vdg"; version="1.1.3"; sha256="07lk6q0iqszwcxzbkkyk9ywcs4lxi14w6j3crgd0xvr5x6kh3qcz"; depends=[ggplot2 gridExtra proxy quantreg]; }; - vdmR = derive2 { name="vdmR"; version="0.2.2"; sha256="1z7m7myv6wpmd8i7v5b1r7n4zmjawbj5i5r27jiqw9id33xn1qpi"; depends=[broom dplyr GGally ggplot2 gridSVG maptools plyr rjson Rook]; }; + vcfR = derive2 { name="vcfR"; version="1.4.0"; sha256="18mgkk8msysb1xahcyp9slj7lvr3xaiwchr8y6sxrvmn1a940wvf"; depends=[ape dplyr magrittr memuse pinfsc50 Rcpp stringr tidyr vegan viridisLite]; }; + vcrpart = derive2 { name="vcrpart"; version="0.4-2"; sha256="16ai6x9x068s91013k980svarpkr310a4mihmcl00mx7bf5lsww3"; depends=[nlme numDeriv partykit rpart sandwich strucchange ucminf zoo]; }; + vdg = derive2 { name="vdg"; version="1.2.0"; sha256="1hi5d14nh9q784sbdk018awrawh9f1aix0wl26x7n0xb4707rcmy"; depends=[ggplot2 gridExtra proxy quantreg]; }; + vdiffr = derive2 { name="vdiffr"; version="0.1.1"; sha256="1aqmawwhz67j7rzrd6cabxvma532mndk3iy3wq2xdm9liwpn9yq4"; depends=[devtools fontquiver gdtools htmlwidgets purrr R6 Rcpp shiny svglite testthat xml2]; }; + vdmR = derive2 { name="vdmR"; version="0.2.3"; sha256="1bvll48lc609zdq0y1d2s95ihzj9a14wkg67i4h87d4akd280k6z"; depends=[broom dplyr GGally ggplot2 gridSVG maptools plyr rjson Rook sp]; }; vec2dtransf = derive2 { name="vec2dtransf"; version="1.1"; sha256="029xynay9f9rn0syphh2rhd3szv50ib4r0h0xfhhvbbb37h5dc9s"; depends=[sp]; }; vecsets = derive2 { name="vecsets"; version="1.1"; sha256="0k27g3frc9y9z2qlm19kfpls6wl0422dilhdlk6096f1fp3mc6ij"; depends=[]; }; vegalite = derive2 { name="vegalite"; version="0.6.1"; sha256="0dlzhvrg3nj6knyycdgg3d1vzq3dn9vxb34fjin9hzilszqmarbk"; depends=[base64 clipr digest htmltools htmlwidgets jsonlite magrittr webshot]; }; - vegan = derive2 { name="vegan"; version="2.3-4"; sha256="1nggyj8nmm9vf3cj4ldyjand5qmpqbkqypwdrk00lrr18ilfpvxr"; depends=[cluster lattice MASS mgcv permute]; }; - vegan3d = derive2 { name="vegan3d"; version="1.0-0"; sha256="0g9plc9ba51qva5vaa82xkn0izrha44pvsvkh2ppcwgqyaiv9xsd"; depends=[rgl scatterplot3d vegan]; }; - vegclust = derive2 { name="vegclust"; version="1.6.3"; sha256="0l6j4sgzfqvcypx2dszpnsd1sivk33pixlgf9abqifp45skpkwfg"; depends=[sp vegan]; }; - vegdata = derive2 { name="vegdata"; version="0.8.9"; sha256="1hv8l2ynzxmpjq438zqhk59sgiwkvgvqdgp7z0dpx24x6q5rzw6s"; depends=[foreign httr jsonlite XML]; }; + vegan = derive2 { name="vegan"; version="2.4-2"; sha256="12wf64izrpq9z3ix7mgm5421mq0xsm8dw5qblvcrz452nfhjf5w9"; depends=[cluster lattice MASS mgcv permute]; }; + vegan3d = derive2 { name="vegan3d"; version="1.0-1"; sha256="19xwbmnmhdvm8vsfjv17bhbjrlsr2wwgjj0nflw8kgmlz0d2f70k"; depends=[cluster rgl scatterplot3d vegan]; }; + vegclust = derive2 { name="vegclust"; version="1.6.5"; sha256="0y1lh4d2i3nxgc30wp6f14v2p14bx399y4cr5r7gv2gi76c5bhj4"; depends=[sp vegan]; }; + vegdata = derive2 { name="vegdata"; version="0.9"; sha256="0hk56nbzg1c1q6shz9b04d60w9gd71f4fhyy89l98mcr41g8hjbc"; depends=[foreign httr jsonlite XML]; }; vegetarian = derive2 { name="vegetarian"; version="1.2"; sha256="15ys1m8p3067dfsjwz6ds837n6rqd19my23yj8vw78xli3qmn445"; depends=[]; }; - venn = derive2 { name="venn"; version="1.1"; sha256="0anpzavc1pppxb95186v7plr3skv2achhpkc1yav2nx0jhsd5i9h"; depends=[]; }; + velociraptr = derive2 { name="velociraptr"; version="1.0"; sha256="1n7q08i37qbbh5cjq6jb4gmpzzip3wx2wx8xx5wpkln8n3nyiqki"; depends=[RCurl rgdal]; }; + velox = derive2 { name="velox"; version="0.1.0"; sha256="0jiza6myx4fj26agzbqjllr34f5kpmgcidrrv1r8jasljsbqf0n1"; depends=[raster Rcpp rgdal rgeos sp]; }; + vembedr = derive2 { name="vembedr"; version="0.1.2"; sha256="0pqjf55rgylszgmzdhzr7m0lcqw3dw6c49i45r39yiq3wprc55qa"; depends=[htmltools httr magrittr stringr]; }; + venn = derive2 { name="venn"; version="1.2"; sha256="18il18i13p92dm167c6mwppzjldp2blq482l5206lp1gqvxyc7f0"; depends=[]; }; venneuler = derive2 { name="venneuler"; version="1.1-0"; sha256="10fviqv9vr7zkmqm6iy2l9bjxglf2ljb7sx423vi4s9vffcxjp17"; depends=[rJava]; }; verification = derive2 { name="verification"; version="1.42"; sha256="0pdqvg7cm9gam49lhc2xy42w788hh2zd06apydc95q2gj95xnaiw"; depends=[boot CircStats dtw fields MASS]; }; - versions = derive2 { name="versions"; version="0.2"; sha256="0kfbsl2wzwaw7v3vd407zaahkslpm51mp68w87m72nvsqlbhiixw"; depends=[]; }; + versions = derive2 { name="versions"; version="0.3"; sha256="0zm49j785dgv7fyr1yl9q5f0dsk8hhpim5q5bpkgrkzv7pwjribd"; depends=[]; }; vertexenum = derive2 { name="vertexenum"; version="1.0.1"; sha256="060sfa22m35d1hqxqngxhy7bwjihf6b4sqa1kg5r0cqvdw9zg51d"; depends=[numbers]; }; vetools = derive2 { name="vetools"; version="1.3-28"; sha256="1470xgqdq9n5kj86gdfds15k3vqidk3h99zi3g76hhyfl8gyl1c0"; depends=[lubridate maptools plyr scales sp stringr tis xts]; }; - vines = derive2 { name="vines"; version="1.1.4"; sha256="18nsxbi8s325l1bbhqn1y5nx1zdbbfwdlb6bv1xxnc1504sf5xz2"; depends=[ADGofTest copula cubature TSP]; }; + vhica = derive2 { name="vhica"; version="0.2.4"; sha256="0km49lrzn9rm3wxadwxc290dvx3bsblbmna7f9lnkq6g1z5jdqwg"; depends=[]; }; + vietnamcode = derive2 { name="vietnamcode"; version="0.1.1"; sha256="0vc0c1fg30afar2dkch5h27b8jbglcd9ja6d5hcypnibqz4c68vz"; depends=[]; }; + vines = derive2 { name="vines"; version="1.1.5"; sha256="057d2fdh03cq9kh4vz94arqscahmz14xbr2g59l0vn205lnyilf1"; depends=[ADGofTest copula cubature TSP]; }; violinmplot = derive2 { name="violinmplot"; version="0.2.1"; sha256="1j3hb03y988xa704kp25v1z1pmpxw5k1502zfqjaf8cy4lr3kzsc"; depends=[lattice]; }; vioplot = derive2 { name="vioplot"; version="0.2"; sha256="16wkb26kv6qr34hv5zgqmgq6zzgysg9i78pvy2c097lr60v087v0"; depends=[sm]; }; viopoints = derive2 { name="viopoints"; version="0.2-1"; sha256="0cpbkkzm1rxch8gnvlmmzy8g521f5ang3nhlcnin419gha0w6avf"; depends=[]; }; - vipor = derive2 { name="vipor"; version="0.3.2"; sha256="12c4f2f5h6na24dra4sj3p8jssswnx6mx60a9ir8mh584npqjhmp"; depends=[]; }; + vipor = derive2 { name="vipor"; version="0.4.4"; sha256="0p1z9a3fazl78pj8a1i2n62v8hrs8cinq82j9wpawhmfkn3dggss"; depends=[]; }; viridis = derive2 { name="viridis"; version="0.3.4"; sha256="1a9hqn2pccpc51vh8ghw698ni6xzdnp8v0n8kgjh51nlz5hhc87j"; depends=[ggplot2 gridExtra]; }; viridisLite = derive2 { name="viridisLite"; version="0.1.3"; sha256="1b0fhj8i1m9jsz91gzag60k7vy7kk5xkdg31rc3h3spq96l66psp"; depends=[]; }; - virtualspecies = derive2 { name="virtualspecies"; version="1.1"; sha256="0znrb6xqyzddd1r999rhx6ix6wgpj1laf5bcns7zgmq6zb39j74s"; depends=[ade4 dismo raster rworldmap]; }; - visNetwork = derive2 { name="visNetwork"; version="0.2.1"; sha256="1jyxkl0d1r7iqw180xb82nykix4w035pxgbvvvl3x5d0bg1892p6"; depends=[htmltools htmlwidgets jsonlite magrittr]; }; - visreg = derive2 { name="visreg"; version="2.2-2"; sha256="04i7908cqjwqlcggp5fv6w21kp4bhkn0ggy0qw3ff7pfs6dz66x4"; depends=[lattice]; }; + virtualspecies = derive2 { name="virtualspecies"; version="1.4-1"; sha256="02n83j10z7m8bjlavm2c6v58z1flhxn36j0h00c5xm085brzww3y"; depends=[ade4 dismo raster rworldmap]; }; + virustotal = derive2 { name="virustotal"; version="0.2.0"; sha256="0c2ig1wki08cq41ma1bawxgyzlkqv2j6kjlsapdry12vm42rz1yc"; depends=[httr plyr]; }; + visNetwork = derive2 { name="visNetwork"; version="1.0.3"; sha256="0wq37srnra6vzzw3d3c5lfvdqpd5329s73zrr9cd2saa6ski23i1"; depends=[htmltools htmlwidgets jsonlite magrittr]; }; + visreg = derive2 { name="visreg"; version="2.3-0"; sha256="05vs3zs8dpdqgk004lc2dnhqjgbfjh1ak17y5c8gni6wkp27hl7y"; depends=[lattice]; }; + vistime = derive2 { name="vistime"; version="0.3.0"; sha256="07vri3n3wkcng793hcy414x0n2hhjwak98ra9sxh36p969m26h1q"; depends=[plotly RColorBrewer]; }; visualFields = derive2 { name="visualFields"; version="0.4.3"; sha256="0ws3cz71hhhrf4xkdb644li04d31wf51xb2sq789bl2lf50q6a1a"; depends=[flip gridBase Hmisc matrixStats]; }; visualize = derive2 { name="visualize"; version="4.2"; sha256="1jgk7j0f3p72wbqnmplrgpy7hlh7k2cmvx83gr2zfnbhygdi22mk"; depends=[]; }; vita = derive2 { name="vita"; version="1.0.0"; sha256="114p2lzcr8rn68f0z4kmjdnragqlmi18axda9ma4sbqh8mrmjs9v"; depends=[randomForest Rcpp]; }; vitality = derive2 { name="vitality"; version="1.2"; sha256="0vjbf39i7qm3857gyidg2j5hfimpydav1sx2d07n12b8q1cs8k4p"; depends=[]; }; - vmsbase = derive2 { name="vmsbase"; version="2.1"; sha256="0fz4hv08w7bpg906624d5gasd6cnqdsx9pp4194xqvsiygzl4zc4"; depends=[AMORE cairoDevice chron cluster DBI ecodist fields foreign ggmap ggplot2 gmt gsubfn gWidgets gWidgetsRGtk2 intervals mapdata maps maptools marmap outliers PBSmapping plotrix R6 RSQLite sp sqldf VennDiagram]; }; + vkR = derive2 { name="vkR"; version="0.1"; sha256="0rb66am3y009wli8ykl58i02kzm6cdqz5v5d4vvzlbngz8crdkyy"; depends=[httr jsonlite XML]; }; + vmsbase = derive2 { name="vmsbase"; version="2.1.3"; sha256="1y4r1f6miwxx3q8pajyh202wvjz08w6291jvpv723qyxa6z1r69a"; depends=[AMORE cairoDevice chron cluster DBI ecodist fields foreign ggmap ggplot2 gmt gsubfn gWidgets gWidgetsRGtk2 intervals mapdata maps maptools marmap outliers PBSmapping plotrix R6 RSQLite sp sqldf VennDiagram]; }; + vote = derive2 { name="vote"; version="1.0-0"; sha256="1fx5x5248s48n86gdclv8pjnllly89rw0l6d2is263qqndn9fsk9"; depends=[formattable knitr]; }; vottrans = derive2 { name="vottrans"; version="1.0"; sha256="1fp7jrw072ws39bqsg88bm2qndcv68aa2vdqwgnza58p1dfq3x9f"; depends=[quadprog]; }; vowels = derive2 { name="vowels"; version="1.2-1"; sha256="0177xysb5y8jzpxn9wdygq2f74gys67g29cd12zw77vlq3c3kkbr"; depends=[]; }; - vows = derive2 { name="vows"; version="0.4"; sha256="0cc0znrnzhfgp47dsyncjh7b072mbwk568n2pshxwdfxzh3kj65q"; depends=[fda gamm4 mgcv oro_nifti RLRsim rpanel shape stringr]; }; + vows = derive2 { name="vows"; version="0.5"; sha256="06akjdbab9v7r47di7syvcm7gf4k81djizg8maszs5l1ksyhmv6b"; depends=[fda gamm4 mgcv oro_nifti RLRsim shape stringr]; }; + voxel = derive2 { name="voxel"; version="1.2.1"; sha256="00r8diza4frwhizsjg5hfmdkikrbcg598sp09m81vg92nmjni41g"; depends=[gamm4 ggplot2 lmerTest mgcv oro_nifti]; }; vqtl = derive2 { name="vqtl"; version="1.0"; sha256="0zlli79rhcbbjkkf4kjjkscx7vk6kspma5qgywxdiyhkxiq8j2x5"; depends=[dglm dplyr evd gtools plyr qtl RColorBrewer scales stringr]; }; vrcp = derive2 { name="vrcp"; version="0.1.1"; sha256="1wrch1dqy752gkj24h1dgi2x3kf1797xj4pf1s9mszf3x3ic905d"; depends=[ggplot2]; }; vrmlgen = derive2 { name="vrmlgen"; version="1.4.9"; sha256="0lifhhf41yml4k83wpkssl14jgn8jaw1lcknwbci1sd8s1c4478l"; depends=[]; }; vrtest = derive2 { name="vrtest"; version="0.97"; sha256="00hdgb0r18nwv3qay97b09kqqw9xqsbya06rrjyddqh9r6ggx1y0"; depends=[]; }; vscc = derive2 { name="vscc"; version="0.2"; sha256="1p14v8vd8kckd44g4dvzh51gdkd8jvsc4bkd2i4csx8vjiwrni5w"; depends=[mclust teigen]; }; - vtreat = derive2 { name="vtreat"; version="0.5.22"; sha256="0wgr7k025iylvv3l4pdwsqrblqimmgf5m7lmmb2ns0lg9m62anrp"; depends=[]; }; + vtreat = derive2 { name="vtreat"; version="0.5.30"; sha256="1i61sv47y3g9hs9bkx9wcirapy30hs66013w5k7116wqsp0dy3b2"; depends=[]; }; vudc = derive2 { name="vudc"; version="1.1"; sha256="0zxz6n3ixa3xjzcinky8ymqjx9w8y8z65mz8d84dl00mxzkmkz4h"; depends=[]; }; vwr = derive2 { name="vwr"; version="0.3.0"; sha256="1h790vjcdfngs1siwldvqz8jrxpkajl3266lzadfnmchfan1x7xv"; depends=[lattice latticeExtra stringdist]; }; wBoot = derive2 { name="wBoot"; version="1.0.3"; sha256="08qgkkv6jvqmxq5gvfp7jbrc3k8mxajfww7k8a3p8888aq411p7q"; depends=[boot simpleboot]; }; + wCorr = derive2 { name="wCorr"; version="1.8.0"; sha256="0s4nlkjqn85mhxynyk5k1l8yb80af728drq2v4yk0dn7v36a5mzx"; depends=[doBy minqa mnormt Rcpp RcppArmadillo]; }; wPerm = derive2 { name="wPerm"; version="1.0.1"; sha256="0f3v0kba87wkwyii0pzvs6a8ja897aifpvwkvryl2hzxxxaml7z4"; depends=[]; }; wSVM = derive2 { name="wSVM"; version="0.1-7"; sha256="0c7rblzgagwfb8mmddkc0nd0f9rv6kapw8znpwapv3fv0j2qzq7h"; depends=[MASS quadprog]; }; waffect = derive2 { name="waffect"; version="1.2"; sha256="0r5dvm0ggyxyv81hxdr1an658wkqkhqq2xaqzqpnh4sh4wbak35a"; depends=[Rcpp]; }; - waffle = derive2 { name="waffle"; version="0.5.0"; sha256="0f5gw487vjpaa9rl6x9p1qxvp9rn4s8p4x58y5azalya6v4hyw6y"; depends=[extrafont ggplot2 gridExtra gtable RColorBrewer]; }; + waffle = derive2 { name="waffle"; version="0.7.0"; sha256="1qjmai33p96cyavi9lgi6k30h6fj7db5sr569v9jf4kwx92c61df"; depends=[extrafont ggplot2 gridExtra gtable RColorBrewer]; }; wahc = derive2 { name="wahc"; version="1.0"; sha256="1324xhajgmxq6dxzpnkcvxdpm2m3g47drhyb2b3h227cn3aakxyg"; depends=[]; }; - wakefield = derive2 { name="wakefield"; version="0.2.1"; sha256="08277iwxgykxbcp1c7ys03vm0amfba7pki0ss69zl0ljv92bgsj9"; depends=[chron dplyr ggplot2 stringi]; }; - walkr = derive2 { name="walkr"; version="0.3.3"; sha256="0gyfhpar667ni5g8g0fwq4zgia3xkf5k9knhgvycq8jf554yxyl6"; depends=[ggplot2 hitandrun limSolve MASS Rcpp RcppEigen shinystan]; }; + wakefield = derive2 { name="wakefield"; version="0.3.0"; sha256="1f74503ar4hw48j13npgzybvwc631xndldidqnyfk72wb11fzi4z"; depends=[chron dplyr ggplot2 stringi]; }; walkscoreAPI = derive2 { name="walkscoreAPI"; version="1.2"; sha256="1c2gfkl5yl3mkviah8s8zjnqk6lnzma1yilxgfxckdh5wywi39fx"; depends=[]; }; - warbleR = derive2 { name="warbleR"; version="1.1.0"; sha256="1zzv9s6i1884j2iybn5bwlyrnzw4ry1s9mvcpq10608nv6bg68pb"; depends=[fftw maps pbapply RCurl rjson seewave tuneR]; }; + wallace = derive2 { name="wallace"; version="0.6.3"; sha256="1kv1svckdgb8rl51qdrn3cc367gklr89fy2lw92992vmsimafxhd"; depends=[devtools dismo dplyr DT ENMeval leaflet magrittr maptools raster RColorBrewer rgdal rgeos rmarkdown shiny shinyBS shinyjs shinythemes spocc spThin]; }; + wand = derive2 { name="wand"; version="0.2.0"; sha256="1p2r96nyr36jv418xi4j2ldarymb4xmpis6d2iz7mq9755kb4fnh"; depends=[dplyr purrr rappdirs Rcpp stringi tibble tidyr]; }; + warbleR = derive2 { name="warbleR"; version="1.1.5"; sha256="1m6hvvf2xji3i3fs19zf54l16wgbi7hwmjxpwfyvh9w6lb6swlnz"; depends=[doParallel dtw fftw foreach jpeg maps pbapply RCurl rjson seewave tuneR]; }; + warpMix = derive2 { name="warpMix"; version="0.1.0"; sha256="13zbl4aifhg7j5b3vpwgzgs09hr7yblz0rckmj5qh40s78j8cpfn"; depends=[fda fields lme4 MASS nlme reshape2]; }; wasim = derive2 { name="wasim"; version="1.1.2"; sha256="1zydzw7cihhdwv0474fnc4lgaq5fwrv8jinz79vkbidbgcy7i2fd"; depends=[fast MASS qualV tiger]; }; - water = derive2 { name="water"; version="0.3"; sha256="1f75564l6ai69541rcdmbhq7zp1fnprif09k7fvbzapi7hy4aia3"; depends=[raster rgdal sp]; }; - waterData = derive2 { name="waterData"; version="1.0.4"; sha256="0wk49f079jfbjncyirdvq50wswf9g361iivshjfhyndv83gbqrzk"; depends=[lattice latticeExtra XML]; }; + water = derive2 { name="water"; version="0.5"; sha256="0g7h1xgij107l5n3551m3ql5m3hn79a7ajv6grk05xf507fy1bb3"; depends=[raster rgdal sp]; }; + waterData = derive2 { name="waterData"; version="1.0.6"; sha256="1k1paifhngy97ik399dndm7m5hm6r935yipiapgpchzsvl5nwwva"; depends=[dataRetrieval lattice latticeExtra lubridate xml2]; }; + waterfall = derive2 { name="waterfall"; version="1.0.2"; sha256="0jy6l9mx0dixwnkychdl18sf4xh73pm0qd1jyxp9rlnv1vcragjp"; depends=[lattice]; }; + waterfalls = derive2 { name="waterfalls"; version="0.1.1"; sha256="0x3f6phlrismivbaf37vqnz30wvz8xzj33qwl2wyg6lijxbmg551"; depends=[ggplot2]; }; waveband = derive2 { name="waveband"; version="4.6"; sha256="1y2qi2zb8l2ap6f8ihnpq2yavic464bl5mp5yv1dscbk0nmfn966"; depends=[wavethresh]; }; waved = derive2 { name="waved"; version="1.1-2"; sha256="17pr9qhz0dbbcr78vwm964d9zd7yrfrqvadr1lwf756bsrscmlg3"; depends=[]; }; wavelets = derive2 { name="wavelets"; version="0.3-0"; sha256="141s7z7wxl5plxp7xp7wczswlcvb18a4h3n881l9qc4ny9p7gfpa"; depends=[]; }; wavemulcor = derive2 { name="wavemulcor"; version="1.2"; sha256="1039y5rakjkx2mvfmykg2z4jpkpbcj7rclyg7ab19wnxmdm8ls81"; depends=[waveslim]; }; + waver = derive2 { name="waver"; version="0.2.0"; sha256="0zxhnrxc68i5jvkc0k2gk11wf0hj92slhb40qiddryx3i7m2yrli"; depends=[geosphere rgdal rgeos sp]; }; waveslim = derive2 { name="waveslim"; version="1.7.5"; sha256="0lqslkihgrd7rbihqhhk57m9vkbnfsznkvk8430cvbcsn7vridii"; depends=[]; }; - wavethresh = derive2 { name="wavethresh"; version="4.6.6"; sha256="1ykhfw1bdibvq2b3rrgqszvwqmzkd3fgxqg7p36ms1cxph68g2r9"; depends=[MASS]; }; + wavethresh = derive2 { name="wavethresh"; version="4.6.8"; sha256="1nz74bm7pgck1i9c28svxnic8wkwkm5dhc8bhrxiih5wxb36kcwk"; depends=[MASS]; }; wbs = derive2 { name="wbs"; version="1.3"; sha256="1fdf3dj23n63nfnzafq88sxqvi15cbrzsvc8wrljw1raq5z012yv"; depends=[]; }; + wbstats = derive2 { name="wbstats"; version="0.1.1"; sha256="18yws6zgvs773mhml5hn6aqyc2xyas10cg5jvnk4l50wir2qknxq"; depends=[httr jsonlite]; }; wbsts = derive2 { name="wbsts"; version="0.3"; sha256="1h749j20q30lrn3b4ffcap3mvxjpih1gchvv8yag0gbzcs0wc1fm"; depends=[mvtnorm wmtsa]; }; wccsom = derive2 { name="wccsom"; version="1.2.11"; sha256="0f2p7sllp3916lcf02k179pnl17fdmk8s7bjnkwb93kh513rs1yj"; depends=[class kohonen MASS]; }; + wdman = derive2 { name="wdman"; version="0.2.2"; sha256="1a6zav82w0krk0ncm5b79ahy2hc0xakg9i1m2143ih5p6zvcm5m0"; depends=[assertthat binman semver subprocess yaml]; }; weatherData = derive2 { name="weatherData"; version="0.4.1"; sha256="19ynb9w52ay15awaf4bqm9lj2w6pk70lyaipn46jrspwxqsvfhlc"; depends=[plyr]; }; - weathermetrics = derive2 { name="weathermetrics"; version="1.2.0"; sha256="1zhcgpr9r5bhg88mk13k5bskm2q4kw88dh3gphlha5j6yf2zsq6r"; depends=[]; }; + weathermetrics = derive2 { name="weathermetrics"; version="1.2.2"; sha256="1hjhgsy3v8328hv4czxxz7kp68sxc10sy10f3dv5j8f6pka6qlsp"; depends=[]; }; weatherr = derive2 { name="weatherr"; version="0.1.2"; sha256="11sb5bmqccqkvlabsw4siy9n6ivsrvxavywvaffgrs3blmnygql9"; depends=[ggmap lubridate RJSONIO XML]; }; - webchem = derive2 { name="webchem"; version="0.1.0.0"; sha256="04w827a3n91avqvnh28dmi5p13ijnmr43qx13p2z1zkr3ashqrnm"; depends=[httr jsonlite RCurl rvest stringr xml2]; }; + webchem = derive2 { name="webchem"; version="0.1.1.1"; sha256="10h01a4slxcc6hllwh4wfayr9wfyaxijs0v875ncm97zb58gwl7h"; depends=[httr jsonlite RCurl rvest stringr xml2]; }; webp = derive2 { name="webp"; version="0.2"; sha256="1nwb30wyff5jynn0ppmg5ybw6q2ha9smnk69fi182grm3znf85as"; depends=[]; }; webreadr = derive2 { name="webreadr"; version="0.4.0"; sha256="0l3l5g4zj5faxqi1kqwx9lq91gbj40z2q3csrsmpal08qnwkxs90"; depends=[Rcpp readr]; }; - webshot = derive2 { name="webshot"; version="0.3"; sha256="12gp81kr96hal8wqh6afc01g9sk36m18j00c093z15sxhgd4wgkn"; depends=[magrittr]; }; + webshot = derive2 { name="webshot"; version="0.4.0"; sha256="0qh1669lkxvr98l8sj03pfn41k4kfsy9787df4rxgigfsx3vnj1h"; depends=[jsonlite magrittr]; }; webuse = derive2 { name="webuse"; version="0.1.2"; sha256="0ks3pb9ir778j9x4l0s4ly2xa1jc9syddqm65wkck52q3lrarg3l"; depends=[haven]; }; webutils = derive2 { name="webutils"; version="0.4"; sha256="1y8xs2kyf8g4mqpxp0kwb47cidmaqs4n3ysiy7p4s35imhzi16dc"; depends=[jsonlite]; }; webvis = derive2 { name="webvis"; version="0.0.2"; sha256="1cdn9jrpg2sbx4dsj0xf7m0daqr7fqiw3xy1lg0i0qn9cpvi348f"; depends=[]; }; - wec = derive2 { name="wec"; version="0.1"; sha256="0mg310v066k52g3isxmsgda44sys4pdl9365470z61c7dz2smy5q"; depends=[]; }; + wec = derive2 { name="wec"; version="0.4"; sha256="05mqz7784x0vl6yj79a0ii9l7jzn2s321dk0mrzq766an1s7w7hc"; depends=[dplyr]; }; + weco = derive2 { name="weco"; version="1.0"; sha256="1akn85igd6k5cfj9hzn3g8a77qzhlzwyc2p4l6y8wigyncg7wyqi"; depends=[]; }; weightTAPSPACK = derive2 { name="weightTAPSPACK"; version="0.1"; sha256="0kpfw477qka5qrc6sh73had38xbrwrqp1yv0dj2qiihkiyrp67ks"; depends=[HotDeckImputation mice plyr survey]; }; weightedScores = derive2 { name="weightedScores"; version="0.9.5.1"; sha256="118hzwaarcb8pk2zz83m6zzzndlpbbzb7gz87vc7zggpa998k1gr"; depends=[mvtnorm rootSolve]; }; + weightr = derive2 { name="weightr"; version="1.0.0"; sha256="03f6zif3a9cnshkchi5ak7s6mcsdyrqcij80aamk8cgb4s4nhc2x"; depends=[]; }; weights = derive2 { name="weights"; version="0.85"; sha256="0nsvgx2yn2ynrkqvvy3fxjsi6aw8w3zknm80fyjrih2zmxc7v61f"; depends=[gdata Hmisc mice]; }; weirs = derive2 { name="weirs"; version="0.25"; sha256="17a0ppi7ghikrwn39zvhg2cvhmnr3w0qi7r9lj22x65ii9nzadd7"; depends=[]; }; wellknown = derive2 { name="wellknown"; version="0.1.0"; sha256="0cin4xi1780hglmcfyjiynvh1lm90yryl1m6z1snpprfzsxx3mmg"; depends=[jsonlite magrittr]; }; wesanderson = derive2 { name="wesanderson"; version="0.3.2"; sha256="17acf9ydi2sw7q887ni9ly12mdmip66ix6gdkh68rncj8sx3csrd"; depends=[]; }; wfe = derive2 { name="wfe"; version="1.3"; sha256="16b39i60x10kw6yz44ff19h638s9lsgnz8azc76zl9b8s64jliya"; depends=[arm MASS Matrix]; }; wfg = derive2 { name="wfg"; version="0.1"; sha256="1r6wb8v42mpapjfhmkmghm9fq21c3s4zmdxy8nlh31nsja71c37d"; depends=[igraph]; }; - wgaim = derive2 { name="wgaim"; version="1.4-10"; sha256="0wf6j7f7hn2cnsb9yi28rjl7sa60zjggg62i00039b7gxcznxj1r"; depends=[lattice qtl]; }; + wfindr = derive2 { name="wfindr"; version="0.1.0"; sha256="0m5xj50hqdjj4lpbgx1kp3my4njr0nz09hd63rf4qf1ls8r7zil9"; depends=[dplyr magrittr]; }; + wgaim = derive2 { name="wgaim"; version="1.4-11"; sha256="1jjyp100dcjjczp61xlvhmy48ynniqcys535vzbgswhr7fvijymg"; depends=[lattice qtl]; }; wgsea = derive2 { name="wgsea"; version="1.8"; sha256="1114wik011sm2n12bwm2bhqvdxagbhbscif45k4pgxdkahy2abpi"; depends=[snpStats]; }; whisker = derive2 { name="whisker"; version="0.3-2"; sha256="0z4cn115gxcl086d6bnqr8afi67b6a7xqg6ivmk3l4ng1x8kcj28"; depends=[]; }; whoami = derive2 { name="whoami"; version="1.1.1"; sha256="1njyjzp9jl5k0vys0ymnvx9vbfckscg4r8hgl1nq7a2q9b9cg06f"; depends=[httr jsonlite]; }; - whoapi = derive2 { name="whoapi"; version="0.1.1"; sha256="0f4szsb30hzihwc5p48f3pi5lvdbchbkynj49drjcdhzds5hwma7"; depends=[httr]; }; + whoapi = derive2 { name="whoapi"; version="0.1.2"; sha256="0ib0an08xsxan24q8mb5ai375njmkdc61lh4321rzgr25iqvi682"; depends=[httr]; }; + wicket = derive2 { name="wicket"; version="0.2.0"; sha256="0wyd72w1l84kxzfy0hhrzr6ipxgzh2gfwldlmv0h79r5icjk17z3"; depends=[BH Rcpp]; }; widals = derive2 { name="widals"; version="0.5.4"; sha256="1bl59s1r4gkvq4nkf94fk7m0zvhbrszkgmig66lfxhyvk9r84fvb"; depends=[snowfall]; }; widenet = derive2 { name="widenet"; version="0.1-2"; sha256="1nimm8szbg82vg00f5c7b3f3sk0gplssbl4ggasjnh7dl621vfny"; depends=[glmnet relaxnet]; }; wikibooks = derive2 { name="wikibooks"; version="0.2"; sha256="178lhri1b8if2j7y7l9kqgyvmkn4z0bxp5l4dmm97x3pav98c7ks"; depends=[]; }; + wikilake = derive2 { name="wikilake"; version="0.1"; sha256="05fcdrv2splhxkr3xgp14mwn36z3sn5hjq4mjibkgh44x7av4rf8"; depends=[maps rvest selectr sp stringi stringr WikipediR xml2]; }; wikipediatrend = derive2 { name="wikipediatrend"; version="1.1.10"; sha256="10av87jlfn2lfx37bnhlpdnhg657md9jx3c3frc9a4mm4lhl7rbv"; depends=[hellno httr jsonlite rvest stringr xml2]; }; wildlifeDI = derive2 { name="wildlifeDI"; version="0.2"; sha256="0z8zyrl3d73x2j32l6xqz5nwhygzy7c9sjfp6bql5acyfvn7ngjv"; depends=[adehabitatLT rgeos sp]; }; wildpoker = derive2 { name="wildpoker"; version="1.1"; sha256="1302ain55spz34irmq49sp9b1pvrn2nxmzmqs8m9wdk6g82h3s27"; depends=[]; }; windex = derive2 { name="windex"; version="1.0"; sha256="0ci10x6mm5i03j05fyadxa0ic0ngpyp5nsn05p9m7v1is5jhxci0"; depends=[ape geiger scatterplot3d]; }; wingui = derive2 { name="wingui"; version="0.2"; sha256="0yf6k33qpcjzyb7ckwsxpdw3pcsja2wsf08vaca7qw27yxrbmaa3"; depends=[Rcpp]; }; wiod = derive2 { name="wiod"; version="0.3.0"; sha256="1f151xmc6bm5d28w5123nm0hv7j1v8hay4jk5fk8pwn6yljl1pah"; depends=[decompr gvc]; }; - withr = derive2 { name="withr"; version="1.0.1"; sha256="0zbj3rd7dc0ycknmay7y7rm1qvnh9n05jw93gjggz46j2zfmy93y"; depends=[]; }; - wkb = derive2 { name="wkb"; version="0.2-0"; sha256="04mljw7mw6cgmvzhcqw15pmqbmm61w8ylgh9f4r4k23c4qcpbmjl"; depends=[sp]; }; + wiqid = derive2 { name="wiqid"; version="0.1.0"; sha256="0vnwalknb2w6fhgbm3iqvniajy31if0rilzd16sms0qr3i1wk7xj"; depends=[coda HDInterval MASS truncnorm]; }; + withr = derive2 { name="withr"; version="1.0.2"; sha256="042z8nmqqilgrvhmbqrjc05qys3gzwq1rqy2wxp2bi5d41859493"; depends=[]; }; + wkb = derive2 { name="wkb"; version="0.3-0"; sha256="0s7libkg27jdmcw5qmk5j0cmz3nqq7ny4q8gy4vhbgsgj4gbbdn9"; depends=[sp]; }; wle = derive2 { name="wle"; version="0.9-91"; sha256="18gqwrrw618f1xx93n0lk95gpi3lxvfkr6fmlb82v2wiibb7k7ak"; depends=[circular]; }; wmlf = derive2 { name="wmlf"; version="0.1.2"; sha256="0zxw84l5v12r15hpyd1kbajjz3cbkn5g884kmj72y7yi0yi1b6d6"; depends=[waveslim]; }; - wmtsa = derive2 { name="wmtsa"; version="2.0-0"; sha256="0y2bv166xwwpb1wf6897qybyf84f34qjsmygdbv90r637c050yk5"; depends=[ifultools MASS splus2R]; }; - wnominate = derive2 { name="wnominate"; version="0.99"; sha256="19pis0p4kkwyddn8f93p4ff7l1hvcdr7m3hrv4bzmm9nd8iy8mk1"; depends=[pscl]; }; + wmtsa = derive2 { name="wmtsa"; version="2.0-2"; sha256="14znrylyazsj3d8nxgh3nvr94ifckan6gwy12b43zsyskzqp9zbg"; depends=[ifultools MASS splus2R]; }; + wnominate = derive2 { name="wnominate"; version="1.2"; sha256="0kkdlhliihv45hc0fd25kairxd9r71hcx04ri9l0iy8cyhjs2n12"; depends=[pscl]; }; woe = derive2 { name="woe"; version="0.2"; sha256="15mvcmwnrqxpzn054lq85vyzq5rgxkiwbd40gnn4s3ny1xdrwgsm"; depends=[]; }; - wordbankr = derive2 { name="wordbankr"; version="0.1"; sha256="0r2wv2vpf4xpalhpnfkyg4qznd83m8nz105xiq5dhwfx78wzvsyr"; depends=[assertthat dplyr magrittr RMySQL stringr tidyr]; }; + woeBinning = derive2 { name="woeBinning"; version="0.1.1"; sha256="00fmbz8vdvf712plm2ip0jfiq3wpj7f4l6wn3i0x0d7fggkfhm1r"; depends=[]; }; + word_alignment = derive2 { name="word.alignment"; version="1.0.4"; sha256="0riz61wib1dbm5zb087xd31vkmw73nz3g82gh59mp673ancfahpd"; depends=[data_table openxlsx quanteda]; }; + wordbankr = derive2 { name="wordbankr"; version="0.2.0"; sha256="041d5v3gm7bihx85k7kxwlqgg6vs24wzs2h59zf3l3cs39mhrhs5"; depends=[assertthat dplyr magrittr RMySQL stringr tidyr]; }; wordcloud = derive2 { name="wordcloud"; version="2.5"; sha256="1ajqdkm8h1wid3d41zd8v7xzf2swid998w31zrghd45a5lcp7qcm"; depends=[RColorBrewer Rcpp slam]; }; + wordcloud2 = derive2 { name="wordcloud2"; version="0.2.0"; sha256="0ylsmijrym61s1vhvf8csimznd1yg497xa3yign4bgi5jx4k64ny"; depends=[base64enc htmlwidgets]; }; wordmatch = derive2 { name="wordmatch"; version="1.0"; sha256="0zscp361qf79y1zsliga18hc7wj36cnydshrqb9pv67b65njrznz"; depends=[plyr reshape2]; }; wordnet = derive2 { name="wordnet"; version="0.1-11"; sha256="0c04wda7im5jzvsb3bhql2krlpvbsv7cc5gdw3dshfqz33knyy9i"; depends=[rJava]; }; + wordspace = derive2 { name="wordspace"; version="0.2-0"; sha256="0rrnbimf68ax1qxsyn7g0kd76abijzxg5i11h93l0fnzi2g2a9xn"; depends=[cluster iotools MASS Matrix Rcpp sparsesvd]; }; + worldmet = derive2 { name="worldmet"; version="0.7.5"; sha256="08mj3m0r9rnljlsk3x25cp4da3bdv9qc1jgy1wrd1zg5908j6dis"; depends=[dplyr leaflet openair plyr RCurl readr zoo]; }; + worrms = derive2 { name="worrms"; version="0.1.0"; sha256="0wxdn960gqqbilg2xs9jjks8z1j6rslb8qwj1s9678hw3h8ymfgx"; depends=[crul jsonlite tibble]; }; wpp2008 = derive2 { name="wpp2008"; version="1.0-1"; sha256="0gd3vjw1fpzhp3qlf1jpc24f76i0pxsjs5pb1v3k2si6df7q4msd"; depends=[]; }; wpp2010 = derive2 { name="wpp2010"; version="1.2-0"; sha256="1h87r1cn4lnx80dprvawsyzfkriscqjgr27gvv7n19wvsx8qd57k"; depends=[]; }; wpp2012 = derive2 { name="wpp2012"; version="2.2-1"; sha256="00283s4r36zzwn67fydrl7ldg6jhn14qkf47h0ifmsky95bd1n5k"; depends=[]; }; - wpp2015 = derive2 { name="wpp2015"; version="1.0-1"; sha256="1vm194b4zccg9sldsmjaf5a95zr5lrdbbg1iwby5a6w06v7g5762"; depends=[]; }; - wppExplorer = derive2 { name="wppExplorer"; version="1.7-1"; sha256="1scxvx0kl1s9yhwrynd65c73b6q3lrz9n26kxcw2zwfzb0c5i1j7"; depends=[DT ggplot2 googleVis Hmisc plyr reshape2 shiny wpp2015]; }; - wq = derive2 { name="wq"; version="0.4.6"; sha256="1j5ghd40dzai647v44kxinqc5wx7bsc93sgxd9f3hb6h4ggfj1ka"; depends=[ggplot2 knitr reshape2 zoo]; }; + wpp2015 = derive2 { name="wpp2015"; version="1.1-0"; sha256="01vsdma2fgh0vd96ly4f704hl200v0w8ksz60gjxhm44ih3qszh3"; depends=[]; }; + wppExplorer = derive2 { name="wppExplorer"; version="2.0-2"; sha256="0mja5bgw6b0dsxi3dpm87y9qbv5b9cgp81yfjkywqc5wdjpirxk7"; depends=[DT ggplot2 googleVis Hmisc plyr reshape2 shiny shinyjs shinythemes wpp2015]; }; wqs = derive2 { name="wqs"; version="0.0.1"; sha256="14qaa9g9v4nqrv897laflib3wwhflyfaf9wpllmbi5xfv9223rcg"; depends=[glm2 Rsolnp]; }; - wrassp = derive2 { name="wrassp"; version="0.1.3"; sha256="1xza4w5dgc6gda9ybmq386jnb1gkahdi6sds5dqay7pm5mjql6fl"; depends=[]; }; + wrangle = derive2 { name="wrangle"; version="0.3"; sha256="1xmb245ps02s43r0ysx87wqjdr174163x5cn4x1y226qbbdclmmk"; depends=[dplyr lazyeval magrittr tidyr]; }; + wrapr = derive2 { name="wrapr"; version="0.1.0"; sha256="1kssir24az6l39lp26g13gacmgarmhdgmc2vlpgfjv37x5lpxk3y"; depends=[]; }; + wrassp = derive2 { name="wrassp"; version="0.1.4"; sha256="0w1hzxwk00lk1hkdxxz6vqa6xzw5sf60y54xzfr510yd02x3r1gn"; depends=[]; }; write_snns = derive2 { name="write.snns"; version="0.0-4.2"; sha256="0sxg7z8rnh4lssbivkrfxldv4ivy37wkndzzndpbvq2gbvbjnp4l"; depends=[]; }; wrspathrow = derive2 { name="wrspathrow"; version="0.1"; sha256="1xkh12aal85qhk8d0pdj2qbi6pp4jnr6zbxkhdw2zwav57ly3f4i"; depends=[raster rgdal rgeos sp wrspathrowData]; }; wrspathrowData = derive2 { name="wrspathrowData"; version="1.0"; sha256="0a1aggcll0fmkwfg4h7rs4j5h3v1bh95dkbriwrb0bx0cikg63x3"; depends=[]; }; wrswoR = derive2 { name="wrswoR"; version="1.0-1"; sha256="1czw3g2j6as024wwvxiizvvxjmsxmxhz86jbw2lh95nh61znb7l8"; depends=[logging Rcpp]; }; wrswoR_benchmark = derive2 { name="wrswoR.benchmark"; version="0.1-1"; sha256="1a2ymyf1yww43i79hc912jpyqvbx44qn5bfnjwf4hq3mp707731j"; depends=[curl lazyeval]; }; - wru = derive2 { name="wru"; version="0.0-2"; sha256="0k8dsih952jkigl1b0f1gbc475jm9926k4gx8sjnx433asda1maa"; depends=[devtools]; }; + wru = derive2 { name="wru"; version="0.1-1"; sha256="103i3a741ik61jzp5zbhf0f6lfchlafq1gyjyy98jgw0cxc6ckcv"; depends=[devtools]; }; wskm = derive2 { name="wskm"; version="1.4.28"; sha256="0d9hcriakg6fxzc8wjsahc4zkyjza31mb9dv2h4xcf8298xa96i4"; depends=[clv lattice latticeExtra]; }; - wsrf = derive2 { name="wsrf"; version="1.5.29"; sha256="1lp1yv5p2c0yq8znwzwj76gri02ip3zh0vzidlzi2fz4vh3z5ck3"; depends=[Rcpp]; }; + wsrf = derive2 { name="wsrf"; version="1.7.0"; sha256="1q4slnwn690z6ham0b2vy1rc0vkbrlj9bf0wkd6v86jag7wjr4fw"; depends=[Rcpp]; }; wtcrsk = derive2 { name="wtcrsk"; version="1.6"; sha256="048gs469rdj85sid1gfj6yhh37w7zf9xv4fj8pd48c8ww3v7f61p"; depends=[]; }; - wux = derive2 { name="wux"; version="2.2-0"; sha256="1sfx1mh4pb5xxkij5738r69cr8h32h1g6004k3s5lk6s8s0rs349"; depends=[abind class corpcor fields gdata Hmisc ncdf4 reshape rgdal rgeos rworldmap sp stringr]; }; - x_ent = derive2 { name="x.ent"; version="1.1.2"; sha256="0wbbhsnlm5yln72h648nz3y5w83kq9qvpw0pk56lsc1bafps712p"; depends=[ggplot2 jsonlite opencpu rJava statmod stringr venneuler xtable]; }; + wtest = derive2 { name="wtest"; version="1.0"; sha256="0rn2wp4xqd1b95asc1ppscfm21p3r85za778f88kgqax2lx7kq96"; depends=[]; }; + wux = derive2 { name="wux"; version="2.2-1"; sha256="0iw0kf0wfspnpc83v7gxhcakmp0z34cccnm0jn9c2za9ay9l2swv"; depends=[abind class corpcor fields gdata Hmisc ncdf4 reshape rgdal rgeos rworldmap sp stringr]; }; + wvtool = derive2 { name="wvtool"; version="1.0"; sha256="0x9awj6g5lzqp2lhwgh9ib7jmfdzyhwazrjvw1vwacqqfhbz8qxv"; depends=[]; }; + x_ent = derive2 { name="x.ent"; version="1.1.6"; sha256="1b4skjai9rivkb86md4k8qmwqbqy8adq9c31d1jq8x04dsm3z0j7"; depends=[ggplot2 jsonlite opencpu rJava statmod stringr venneuler xtable]; }; x12 = derive2 { name="x12"; version="1.6.0"; sha256="0bl50nva4ai8p24f9hr622m0fc5nmbjakn3rsvl79g050gjsd4i3"; depends=[stringr]; }; x12GUI = derive2 { name="x12GUI"; version="0.13.0"; sha256="1mga7g9gwb3nv2qs27lz4n9rp6j3svads28hql88sxaif6is3nk1"; depends=[cairoDevice Hmisc lattice RGtk2 stringr x12]; }; x13binary = derive2 { name="x13binary"; version="0.1.2"; sha256="1cvbqbg9bck9dlsj929wysg8frkc70p0hwpwy1rj4qwyw8czi4bs"; depends=[]; }; - xVA = derive2 { name="xVA"; version="0.8"; sha256="05hw886pdi0gqvv3x3nn4a757nfc6cc6p3z8p4lp5f72ynbrlia8"; depends=[SACCR]; }; - xergm = derive2 { name="xergm"; version="1.7.0"; sha256="04ng0mdlzc182ijn0c7ln7zscm9w4631vhzqzhfayjf3ik264nns"; depends=[btergm rem tnam xergm_common]; }; - xergm_common = derive2 { name="xergm.common"; version="1.7.1"; sha256="0l8jjz883358w704lw7rrr1z8pxk5fj78rgamsh942d0m9yp4lls"; depends=[ergm network]; }; - xgboost = derive2 { name="xgboost"; version="0.4-3"; sha256="1gq8h03hpvm2w7ninb4qpbyl9h1gvwjzcz9jnnwi0dnqknm5b26q"; depends=[data_table magrittr Matrix stringr]; }; + xLLiM = derive2 { name="xLLiM"; version="1.0"; sha256="005y3xgfac047lga3dbckkz4ba781vd7dab867515yj18q5rllp7"; depends=[abind corpcor MASS Matrix]; }; + xVA = derive2 { name="xVA"; version="0.8.1"; sha256="0wr4i37sya5gg6v63ka16g9077gxbhvjqyqfaahhban8skzl2adf"; depends=[SACCR Trading]; }; + xaringan = derive2 { name="xaringan"; version="0.2"; sha256="0nlys4gakgj73826yvzk5yy38kj7h33a3970vwls8n06fc68xksn"; depends=[htmltools knitr rmarkdown servr]; }; + xergm = derive2 { name="xergm"; version="1.7.3"; sha256="0pr6qm8q039j9c9vibm7inb5qsvl4x54djckm7087zymvriyfmvl"; depends=[btergm GERGM rem tnam xergm_common]; }; + xergm_common = derive2 { name="xergm.common"; version="1.7.4"; sha256="1mrd5sa6bwv5lw6q0q9xj6zacs41522r69bm1ijd14gx5k1gwn7s"; depends=[ergm network]; }; + xgboost = derive2 { name="xgboost"; version="0.6-4"; sha256="1vfiz44prcjx2y442zc4x1b50k57qwd7sqbz6lq0kiqhp78ivicz"; depends=[data_table magrittr Matrix stringi]; }; xgobi = derive2 { name="xgobi"; version="1.2-15"; sha256="03ym5mm16rb1bdwrymr393r3xgprp0ign45ryym3g0x2zi8dy557"; depends=[]; }; xhmmScripts = derive2 { name="xhmmScripts"; version="1.1"; sha256="1qryyb34jx9c64l8bnwp40b08y81agdj5w0icj8dk052x50ip1hl"; depends=[gplots plotrix]; }; xkcd = derive2 { name="xkcd"; version="0.0.5"; sha256="1cq4n7w4adj24qq658z15jkqvrn4pd5abxpcsdkzb2cq98m69iis"; depends=[extrafont ggplot2 Hmisc]; }; + xkcdcolors = derive2 { name="xkcdcolors"; version="1.0"; sha256="07fnjv01r3b951dqca2zs9b9f6hsgbpbpsrggvb8rps53kpid0i7"; depends=[FNN]; }; xlsx = derive2 { name="xlsx"; version="0.5.7"; sha256="0qxkdpf1dvi0x7fy65abjx2j60rdx7fv5yi8l2wdm0f2631pnwin"; depends=[rJava xlsxjars]; }; xlsxjars = derive2 { name="xlsxjars"; version="0.6.1"; sha256="1rka5smm7yqnhhlblpihhciydfap4i6kjaa4a7isdg7qjmzm3h9p"; depends=[rJava]; }; - xmeta = derive2 { name="xmeta"; version="1.0-2"; sha256="0b6swqlhiyhkwh5d0rvn1r9bslhnxx34yfw37l1m0bx9cndcalkz"; depends=[aod glmmML metafor mvmeta numDeriv]; }; - xml2 = derive2 { name="xml2"; version="0.1.2"; sha256="0jjilz36h7vbdbkpvjnja1vgjf6d1imql3z4glqn2m2b74w5qm4c"; depends=[BH Rcpp]; }; + xlutils3 = derive2 { name="xlutils3"; version="0.1.0"; sha256="1cxishi62bd36zlsy5qhzix1p68akdf9kpjg9gfm9aqpcijzccb9"; depends=[magrittr readxl]; }; + xmeta = derive2 { name="xmeta"; version="1.1-3"; sha256="18m28zf4rg0czxagqp2f0c36qkan7s17414vkrknc6s1xja44gaq"; depends=[aod glmmML metafor mvmeta numDeriv]; }; + xml2 = derive2 { name="xml2"; version="1.1.1"; sha256="05iifrcgzx53w5ciw8bbm4vdwc3giv4xsvazv8chqxkndfvf7wq0"; depends=[BH Rcpp]; }; + xmlparsedata = derive2 { name="xmlparsedata"; version="1.0.1"; sha256="0q9d4l3p4ypc0qswnjwrd3as9bx9f1niixsc19y1msva51sg5h39"; depends=[]; }; xoi = derive2 { name="xoi"; version="0.66-9"; sha256="1kd9s9afq5shsaqhrxai9yz60a9imyy5np76fjpkjgyz56kbk6nr"; depends=[qtl]; }; xpose4 = derive2 { name="xpose4"; version="4.5.3"; sha256="02m3ad4287ljsi4qrzwd84lfj1y6rz9nias2zk4cbqm14gf19pdf"; depends=[gam Hmisc lattice survival]; }; xseq = derive2 { name="xseq"; version="0.2.1"; sha256="0bsakbfvkfv39q2ch2g21b17g84470sq4v73355cljlshsi6404i"; depends=[e1071 gptk impute preprocessCore RColorBrewer sfsmisc]; }; + xslt = derive2 { name="xslt"; version="1.0"; sha256="0qsllagbib1a5ahxsk4s1fib4lyw45axi2c2d187mnpzpsy3pzfn"; depends=[Rcpp xml2]; }; xtable = derive2 { name="xtable"; version="1.8-2"; sha256="0398qkpvlw3dv0myz4mjcyqwpwc2m31l127r8vdzwc71wb6s28qn"; depends=[]; }; xtal = derive2 { name="xtal"; version="1.15"; sha256="1zq3vd5x3vw6acn47yd2x7kflr9sm3znmdkm68cs64ha54jbl3vs"; depends=[]; }; xtermStyle = derive2 { name="xtermStyle"; version="3.0.5"; sha256="1q4qq8w4sgxbbb1x0i4k5xndvwisvjszg830wspwb37wigxz8xvz"; depends=[]; }; + xtractomatic = derive2 { name="xtractomatic"; version="3.2.0"; sha256="04gng8y7606fvyj767f9vja33fh0xcwj2v2jy3nacybjwwr9yrx0"; depends=[httr ncdf4 sp]; }; xts = derive2 { name="xts"; version="0.9-7"; sha256="163hzcnxrdb4lbsnwwv7qa00h4qlg4jm289acgvbg4jbiywpq7zi"; depends=[zoo]; }; + xxIRT = derive2 { name="xxIRT"; version="2.0.0"; sha256="140dp3chsd9mlnbysachck3547zgcpsbrgqhnrdxp348pny0l94b"; depends=[ggplot2 lpSolveAPI reshape2 shiny]; }; + xyloplot = derive2 { name="xyloplot"; version="1.3"; sha256="1pgxsmghpy9am1smdfc0d8hi2l9gb15ssfpf4z84cc2chhaghc7w"; depends=[]; }; + xyz = derive2 { name="xyz"; version="0.1"; sha256="0hynmrbi1f0ijv2g0va8bnr84ls2d8prl32f76mmfq6a3laqrj9i"; depends=[Rcpp]; }; yCrypticRNAs = derive2 { name="yCrypticRNAs"; version="0.99.2"; sha256="130zp8na3d50b49bcsqzsmjy2sif865h6vfpc5zmp1fhvkyykkfd"; depends=[biomaRt data_table IRanges mclust MESS Rcpp Rsamtools]; }; yaImpute = derive2 { name="yaImpute"; version="1.0-26"; sha256="00w127wnwnhkfkrn4764l1ap3d3njlidglk9izcxm0n4kqj0zb49"; depends=[]; }; yacca = derive2 { name="yacca"; version="1.1"; sha256="0wg2wgvh1najmccmgzyigj11mshrdb8w4r2pqq360dracpn0ak6x"; depends=[]; }; yakmoR = derive2 { name="yakmoR"; version="0.1.1"; sha256="09aklz79s0911p2wnpd7gc6vrbr9lmiskhkahsc63pdigggmq9f7"; depends=[BBmisc checkmate Rcpp]; }; - yaml = derive2 { name="yaml"; version="2.1.13"; sha256="18kz5mfn7qpif5pn91w4vbrc5bkycsj85vwm5wxwzjlb02i9mxi6"; depends=[]; }; + yaml = derive2 { name="yaml"; version="2.1.14"; sha256="0x88xicrf7vwp77xgan27mnpdljhpkn0pz5kphnwqi3ddy25k9a1"; depends=[]; }; + yarrr = derive2 { name="yarrr"; version="0.1.4"; sha256="171z69jgva1afzmcjk62g9mr18z9r955rizvsp46bcljj74vfq39"; depends=[BayesFactor jpeg]; }; ycinterextra = derive2 { name="ycinterextra"; version="0.1"; sha256="0hr37izbbmxqkjy6a7q8vcn0vs8an1ck9y8xfjpl5z0rygi8xc1v"; depends=[mcGlobaloptim]; }; + yesno = derive2 { name="yesno"; version="0.0.2"; sha256="0aa8kqcqlix9a9a2l4fnl2qv25dgdn4m7cfsh7m0kk76y8q5gbc9"; depends=[]; }; yhat = derive2 { name="yhat"; version="2.0-0"; sha256="0vdhkknmms7zy7iha894jn1hr1h5w67pr53r0q67m7p404w21iza"; depends=[boot miscTools plotrix yacca]; }; - yhatr = derive2 { name="yhatr"; version="0.13.10"; sha256="1hlab1x44xld634ha36y66znfpl3a8v77281c07i954d9sqm893p"; depends=[httr jsonlite rjson stringr]; }; + yhatr = derive2 { name="yhatr"; version="0.15.0"; sha256="0irgc26ds8fs8lwgghkhzrvx9drx338vxsphwia4wspd2i0yyzsk"; depends=[httr jsonlite stringr]; }; ykmeans = derive2 { name="ykmeans"; version="1.0"; sha256="0xfji2fmslvc059kk3rwkv575ffzl787sa9d4vw5hxnsmkn8lq50"; depends=[foreach plyr]; }; - yuima = derive2 { name="yuima"; version="1.0.81"; sha256="171ma8j8x7adwfiixihjp6bwg7w5xij38fvmkazsxd39aw7gkz7z"; depends=[cubature expm mvtnorm zoo]; }; + yorkr = derive2 { name="yorkr"; version="0.0.7"; sha256="035pmvignq4lip3y5670kxj1n70ff04yy2jwi4837pimr9d0qjhv"; depends=[dplyr ggplot2 gridExtra reshape2 rpart_plot yaml]; }; + yuima = derive2 { name="yuima"; version="1.5.9"; sha256="04s96zkyccb2nkgzh07jxa8lpyrvzigyiynis2ifiql12yw5c960"; depends=[cubature expm mvtnorm Rcpp zoo]; }; + yuimaGUI = derive2 { name="yuimaGUI"; version="1.0.0"; sha256="12mr9icngrrghn0j1dpyx2njr7sn9zc5nm3imrqq3qxz7wv45fg8"; depends=[DT ggplot2 quantmod sde shiny shinyBS shinydashboard shinyjs yuima]; }; yummlyr = derive2 { name="yummlyr"; version="0.1.1"; sha256="0xrk6g58laksz92d8mxck923sk4j92g55szrkxk123wjp5kg9vx6"; depends=[httr jsonlite]; }; - zCompositions = derive2 { name="zCompositions"; version="1.0.3"; sha256="0lxy201ys9dvv8c09q8wbks1c2jkjyd1bbrxhjr7zi9j7m0parl7"; depends=[MASS NADA truncnorm]; }; + zCompositions = derive2 { name="zCompositions"; version="1.0.3-1"; sha256="1408bb5nfipsxskgpjzixnxndg7hf48nq27k0pwrcxx16wykmlcy"; depends=[MASS NADA truncnorm]; }; + zTree = derive2 { name="zTree"; version="1.0.4"; sha256="058vjvxn1lw07nxw8rs1b8vnw6ccxh3swrmvjicvr35xmakj8qa0"; depends=[plyr]; }; + zeallot = derive2 { name="zeallot"; version="0.0.2"; sha256="0rksacqasiq9xxxmkdqi5c844xhbnda6f6hr8mz37vg9zxqzfbdj"; depends=[]; }; + zebu = derive2 { name="zebu"; version="0.1.0"; sha256="1s9lm90yhyhflikvrwpbx94gysc7wazpi4v3vh3fibiyna0a9sgj"; depends=[ggplot2 pbapply plyr reshape2]; }; zendeskR = derive2 { name="zendeskR"; version="0.4"; sha256="06cjwk08w3x6dx717123psinid5bx6c563jnfn890373jw6xnfrk"; depends=[RCurl rjson]; }; - zetadiv = derive2 { name="zetadiv"; version="0.1"; sha256="1p9mxy70mgqxjn7szh44217nvhjh90237kp5znli1r01ch64mx6b"; depends=[car mgcv vegan]; }; + zenplots = derive2 { name="zenplots"; version="0.0-1"; sha256="0agm81rrn4ip6sljrwm1a9i2q9rwdwamnxm0smz757kypgyll8c2"; depends=[graph MASS PairViz]; }; + zetadiv = derive2 { name="zetadiv"; version="1.0"; sha256="1r33v97viqq6r3afszclq45rcm4sfxy86lk13ljr6bxns47xpfii"; depends=[car glm2 Imap mgcv nnls scam vegan]; }; zic = derive2 { name="zic"; version="0.9"; sha256="0i39983blc46vjbb4y36rypg9q3zammxahk63p089m43gi22ycxh"; depends=[coda Rcpp RcppArmadillo]; }; zipcode = derive2 { name="zipcode"; version="1.0"; sha256="1lvlf1h5fv412idpdssjfh4fki933dm5nhr41ppl1mf45b9j7azn"; depends=[]; }; zipfR = derive2 { name="zipfR"; version="0.6-6"; sha256="1y3nqfjg5m89mdvcmqwjmwlc8p3hpcqnwv4ji1a7ggg4n63lwl3j"; depends=[]; }; + ziphsmm = derive2 { name="ziphsmm"; version="1.0.3"; sha256="0x7l4sgbixlz6x28gm3sk7x65n3p8jcm5ck3i10vy49f1fsvkf80"; depends=[Rcpp RcppArmadillo]; }; zoeppritz = derive2 { name="zoeppritz"; version="1.0-5"; sha256="0a501411gjs02vvhxdy8z3a5449arkamdidf2q6qswkkiv68qq04"; depends=[]; }; - zoib = derive2 { name="zoib"; version="1.3.3"; sha256="0j183jyx9qirdyg03rpv6q30rxbb68cs6g2qpi53arpfk2v9f445"; depends=[abind coda Formula matrixcalc rjags]; }; - zoo = derive2 { name="zoo"; version="1.7-12"; sha256="1n64pdmk2vrmiprwkncaaf936c97nlc1l78bvmzp991rijr9vqg5"; depends=[lattice]; }; + zoib = derive2 { name="zoib"; version="1.4.2"; sha256="0gdbcnxlm9m88c2av4zy0k3yvm2cvg24804xnsi0mwfgwmnngdh5"; depends=[abind coda Formula matrixcalc rjags]; }; + zoo = derive2 { name="zoo"; version="1.7-14"; sha256="167m142rwwfy8b9hnfc3fi28dcsdjk61g1crqhll6sh5xmgnfn28"; depends=[lattice]; }; zooaRch = derive2 { name="zooaRch"; version="1.2"; sha256="0grc378xppv0303sf4flfqz5002vq5a23nzbq4bsff41rww7dihc"; depends=[ggplot2]; }; + zoocat = derive2 { name="zoocat"; version="0.2.0"; sha256="1xqi90jnpqjdf3zr4pldh1a2gjppjwjrgkq71rvdhmcrf5s8jav0"; depends=[plyr reshape2 scales zoo]; }; zooimage = derive2 { name="zooimage"; version="3.0-5"; sha256="1r3slmyw0dyqfa40dr5xga814z09ibhmmby8p1cii5lh61xm4c39"; depends=[filehash jpeg mlearning png svDialogs svMisc]; }; zoom = derive2 { name="zoom"; version="2.0.4"; sha256="03f5rxfr6ncf1j6vpn7pip21q7ylj4bx0a5xphqb6x6i33lxf1g5"; depends=[]; }; - zoon = derive2 { name="zoon"; version="0.4.23"; sha256="0y8jmlqfdnf5j7dzcz2y4dspxlzl6nvsa9ly97myg461ypicm8sc"; depends=[dismo raster RCurl rfigshare]; }; + zoon = derive2 { name="zoon"; version="0.6"; sha256="0dyl8fnzjncxb9q322xsdmvbm0wwzl1w9750vmvndpd8c05qi1n0"; depends=[dismo plyr randomForest raster RCurl rfigshare rgdal roxygen2 SDMTools sp testthat]; }; ztable = derive2 { name="ztable"; version="0.1.5"; sha256="1jfqnqy9544gfvz3bsb48v4177nwp4b4n9l2743asq8sbq305b5r"; depends=[]; }; + ztype = derive2 { name="ztype"; version="0.1.0"; sha256="0brbq2rgkl4mhjbb70kkfv47lzs66k9ppfs2klavcbripirxn5fx"; depends=[assertthat dplyr ggplot2 lubridate magrittr rvest stringr]; }; zyp = derive2 { name="zyp"; version="0.10-1"; sha256="0f1fqqxysf3psnvn08s5qly2c958h1hhznjjj8mvpjr5g6hqlr1k"; depends=[Kendall]; }; } diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index 49273e34c7e8..ad153a1c382b 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -242,10 +242,10 @@ let BayesVarSel = [ pkgs.gsl_1 ]; BayesXsrc = [ pkgs.readline.dev pkgs.ncurses ]; bigGP = [ pkgs.openmpi ]; + bio3d = [ pkgs.zlib ]; BiocCheck = [ pkgs.which ]; Biostrings = [ pkgs.zlib ]; bnpmr = [ pkgs.gsl_1 ]; - BNSP = [ pkgs.gsl_1 ]; cairoDevice = [ pkgs.gtk2.dev ]; Cairo = [ pkgs.libtiff pkgs.libjpeg pkgs.cairo.dev pkgs.x11 pkgs.fontconfig.lib ]; Cardinal = [ pkgs.which ]; @@ -642,7 +642,6 @@ let "rsgcc" "RSurvey" "RunuranGUI" - "sdcMicroGUI" "sharpshootR" "simba" "Simile" @@ -766,7 +765,6 @@ let "Metab" # broken build "Crossover" # broken build "CardinalWorkflows" # broken build - "spoccutils" # depends on broken package spocc "mapr" # depends on broken package spocc "vmsbase" # broken build "vcfR" # broken build @@ -804,275 +802,6 @@ let "AnthropMMD" # depends on broken package euroMix "ilc" # depends on broken package demography "demography" # broken build - "webbioc" # depends on broken package limma - "davidTiling" # depends on broken package limma - "tilingArray" # depends on broken package limma - "NAPPA" # depends on broken package limma - "NanoStringNorm" # depends on broken package limma - "synapterdata" # depends on broken package limma - "synapter" # depends on broken package limma - "RforProteomics" # depends on broken package limma - "pRolocdata" # depends on broken package limma - "ProCoNA" # depends on broken package limma - "Pbase" # depends on broken package limma - "MSnID" # depends on broken package limma - "msmsEDA" # depends on broken package limma - "MSnbase" # depends on broken package limma - "staRank" # depends on broken package limma - "phenoDist" # depends on broken package limma - "imageHTS" # depends on broken package limma - "Mulder2012" # depends on broken package limma - "HTSanalyzeR" # depends on broken package limma - "gespeR" # depends on broken package limma - "cellHTS2" # depends on broken package limma - "affyPara" # depends on broken package limma - "vsn" # depends on broken package limma - "ttScreening" # depends on broken package limma - "metaX" # depends on broken package limma - "SSPA" # depends on broken package limma - "SQDA" # depends on broken package limma - "ADaCGH2" # depends on broken package limma - "snapCGH" # depends on broken package limma - "Shrinkage" # depends on broken package limma - "SafeQuant" # depends on broken package limma - "RTopper" # depends on broken package limma - "RTCGAToolbox" # depends on broken package limma - "RPPanalyzer" # depends on broken package limma - "Rnits" # depends on broken package limma - "RNAinteractMAPK" # depends on broken package limma - "RNAinteract" # depends on broken package limma - "SimBindProfiles" # depends on broken package limma - "ccTutorial" # depends on broken package limma - "Ringo" # depends on broken package limma - "rCGH" # depends on broken package limma - "qusage" # depends on broken package limma - "qpcrNorm" # depends on broken package limma - "prot2D" # depends on broken package limma - "polyester" # depends on broken package limma - "plmDE" # depends on broken package limma - "phenoTest" # depends on broken package limma - "RANKS" # depends on broken package limma - "PerfMeas" # depends on broken package limma - "pepStat" # depends on broken package limma - "PECA" # depends on broken package limma - "PADOG" # depends on broken package limma - "OGSA" # depends on broken package limma - "nethet" # depends on broken package limma - "lpNet" # depends on broken package limma - "nem" # depends on broken package limma - "monocle" # depends on broken package limma - "MmPalateMiRNA" # depends on broken package limma - "miRtest" # depends on broken package limma - "miRLAB" # depends on broken package limma - "mGSZ" # depends on broken package limma - "MAMA" # depends on broken package limma - "metaMA" # depends on broken package limma - "msd16s" # depends on broken package limma - "metagenomeSeq" # depends on broken package limma - "metabolomics" # depends on broken package limma - "maSigPro" # depends on broken package limma - "timecourse" # depends on broken package limma - "stepNorm" # depends on broken package limma - "RBM" # depends on broken package limma - "saps" # depends on broken package limma - "PharmacoGx" # depends on broken package limma - "piano" # depends on broken package limma - "OLINgui" # depends on broken package limma - "OLIN" # depends on broken package limma - "nnNorm" # depends on broken package limma - "ListerEtAlBSseq" # depends on broken package limma - "compEpiTools" # depends on broken package limma - "methylPipe" # depends on broken package limma - "dyebiasexamples" # depends on broken package limma - "dyebias" # depends on broken package limma - "CluMix" # depends on broken package limma - "HCsnip" # depends on broken package limma - "sigaR" # depends on broken package limma - "plrs" # depends on broken package limma - "CGHregions" # depends on broken package limma - "QDNAseq_mm10" # depends on broken package limma - "QDNAseq_hg19" # depends on broken package limma - "QDNAseq" # depends on broken package limma - "GeneBreak" # depends on broken package limma - "focalCall" # depends on broken package limma - "CGHnormaliter" # depends on broken package limma - "CGHcall" # depends on broken package limma - "CGHbase" # depends on broken package limma - "beta7" # depends on broken package limma - "marray" # depends on broken package limma - "LVSmiRNA" # depends on broken package limma - "lmdme" # depends on broken package limma - "limmaGUI" # depends on broken package limma - "InPAS" # depends on broken package limma - "iChip" # depends on broken package limma - "unifiedWMWqPCR" # depends on broken package limma - "nondetects" # depends on broken package limma - "HTqPCR" # depends on broken package limma - "HD2013SGI" # depends on broken package limma - "vtpnet" # depends on broken package limma - "gwascat" # depends on broken package limma - "gQTLstats" # depends on broken package limma - "GOsummaries" # depends on broken package limma - "yri1kgv" # depends on broken package limma - "hmyriB36" # depends on broken package limma - "cheung2010" # depends on broken package limma - "GGtools" # depends on broken package limma - "GGdata" # depends on broken package limma - "encoDnaseI" # depends on broken package limma - "dsQTL" # depends on broken package limma - "ceuhm3" # depends on broken package limma - "ceu1kgv" # depends on broken package limma - "ceu1kg" # depends on broken package limma - "GGBase" # depends on broken package limma - "GeneSelector" # depends on broken package limma - "GeneSelectMMD" # depends on broken package limma - "gCMAPWeb" # depends on broken package limma - "gCMAP" # depends on broken package limma - "flowBin" # depends on broken package limma - "Fletcher2013a" # depends on broken package limma - "FEM" # depends on broken package limma - "explorase" # depends on broken package limma - "ExiMiR" # depends on broken package limma - "tweeDEseq" # depends on broken package limma - "tRanslatome" # depends on broken package limma - "ToPASeq" # depends on broken package limma - "timeSeq" # depends on broken package limma - "TCGAbiolinks" # depends on broken package limma - "TCC" # depends on broken package limma - "systemPipeR" # depends on broken package limma - "STATegRa" # depends on broken package limma - "ssizeRNA" # depends on broken package limma - "RUVSeq" # depends on broken package limma - "RnaSeqSampleSizeData" # depends on broken package limma - "RnaSeqSampleSize" # depends on broken package limma - "rnaSeqMap" # depends on broken package limma - "ReportingTools" # depends on broken package limma - "QuasiSeq" # depends on broken package limma - "PROPER" # depends on broken package limma - "myTAI" # depends on broken package limma - "msmsTests" # depends on broken package limma - "methylMnM" # depends on broken package limma - "metaseqR" # depends on broken package limma - "MEDIPS" # depends on broken package limma - "manta" # depends on broken package limma - "HTSFilter" # depends on broken package limma - "HTSCluster" # depends on broken package limma - "GSAgm" # depends on broken package limma - "fdrDiscreteNull" # depends on broken package limma - "erccdashboard" # depends on broken package limma - "EnrichmentBrowser" # depends on broken package limma - "edgeRun" # depends on broken package limma - "EDDA" # depends on broken package limma - "RnaSeqTutorial" # depends on broken package limma - "easyRNASeq" # depends on broken package limma - "DEGreport" # depends on broken package limma - "Imetagene" # depends on broken package limma - "metagene" # depends on broken package limma - "DBChIP" # depends on broken package limma - "babel" # depends on broken package limma - "apmsWAPP" # depends on broken package limma - "ampliQueso" # depends on broken package limma - "edgeR" # depends on broken package limma - "MMDiff" # depends on broken package limma - "ChIPQC" # depends on broken package limma - "DiffBind" # depends on broken package limma - "DCGL" # depends on broken package limma - "Prostar" # depends on broken package limma - "DAPAR" # depends on broken package limma - "DAAGbio" # depends on broken package limma - "csaw" # depends on broken package limma - "cp4p" # depends on broken package limma - "coRNAi" # depends on broken package limma - "Cormotif" # depends on broken package limma - "CORM" # depends on broken package limma - "TurboNorm" # depends on broken package limma - "maigesPack" # depends on broken package limma - "convert" # depends on broken package limma - "compcodeR" # depends on broken package limma - "codelink" # depends on broken package limma - "clippda" # depends on broken package limma - "REDseq" # depends on broken package limma - "GUIDEseq" # depends on broken package limma - "ggtut" # depends on broken package limma - "FunciSNP" # depends on broken package limma - "ChIPpeakAnno" # depends on broken package limma - "ChIPComp" # depends on broken package limma - "ChimpHumanBrainData" # depends on broken package limma - "charmData" # depends on broken package limma - "charm" # depends on broken package limma - "cghMCR" # depends on broken package limma - "CCl4" # depends on broken package limma - "casper" # depends on broken package limma - "CancerMutationAnalysis" # depends on broken package limma - "CALIB" # depends on broken package limma - "quantro" # depends on broken package limma - "RnBeads" # depends on broken package limma - "mvoutData" # depends on broken package limma - "MineICA" # depends on broken package limma - "methyAnalysis" # depends on broken package limma - "MAQCsubsetILM" # depends on broken package limma - "MAQCsubset" # depends on broken package limma - "lumiRatIDMapping" # depends on broken package limma - "lumiMouseIDMapping" # depends on broken package limma - "lumiHumanIDMapping" # depends on broken package limma - "lumiBarnes" # depends on broken package limma - "iCheck" # depends on broken package limma - "ffpeExampleData" # depends on broken package limma - "arrayMvout" # depends on broken package limma - "lumi" # depends on broken package limma - "ffpe" # depends on broken package limma - "methylumi" # depends on broken package limma - "shinyMethyl" # depends on broken package limma - "MethylAidData" # depends on broken package limma - "MethylAid" # depends on broken package limma - "IlluminaHumanMethylation450kmanifest" # depends on broken package limma - "skewr" # depends on broken package limma - "wateRmelon" # depends on broken package limma - "missMethyl" # depends on broken package limma - "minfiData" # depends on broken package limma - "IlluminaHumanMethylation450kanno_ilmn12_hg19" # depends on broken package limma - "IlluminaHumanMethylation27kmanifest" # depends on broken package limma - "FlowSorted_DLPFC_450k" # depends on broken package limma - "FlowSorted_Blood_450k" # depends on broken package limma - "ENmix" # depends on broken package limma - "ELMER" # depends on broken package limma - "MEAL" # depends on broken package limma - "DMRcate" # depends on broken package limma - "CopyNumber450kData" # depends on broken package limma - "CopyNumber450k" # depends on broken package limma - "conumee" # depends on broken package limma - "ChAMP" # depends on broken package limma - "minfi" # depends on broken package limma - "regionReport" # depends on broken package limma - "derfinderPlot" # depends on broken package limma - "derfinder" # depends on broken package limma - "bumphunter" # depends on broken package limma - "birta" # depends on broken package limma - "betr" # depends on broken package limma - "beadarrayMSV" # depends on broken package limma - "RobLoxBioC" # depends on broken package limma - "maGUI" # depends on broken package limma - "epigenomix" # depends on broken package limma - "blima" # depends on broken package limma - "BeadArrayUseCases" # depends on broken package limma - "beadarrayFilter" # depends on broken package limma - "beadarrayExampleData" # depends on broken package limma - "beadarray" # depends on broken package limma - "ballgown" # depends on broken package limma - "attract" # depends on broken package limma - "ArrayTools" # depends on broken package limma - "arrayQuality" # depends on broken package limma - "DrugVsDisease" # depends on broken package limma - "ArrayExpress" # depends on broken package limma - "oneChannelGUI" # depends on broken package limma - "affylmGUI" # depends on broken package limma - "AffyExpress" # depends on broken package limma - "AgiMicroRna" # depends on broken package limma - "affycoretools" # depends on broken package limma - "ABSSeq" # depends on broken package limma - "a4" # depends on broken package limma - "a4Base" # depends on broken package limma - "limma" # broken build "TransView" # broken build "Starr" # broken build "SICtools" # broken build @@ -1161,7 +890,6 @@ let "tadaatoolbox" # depends on broken package car "lavaan_shiny" # depends on broken package car "RcmdrPlugin_GWRM" # depends on broken package car - "TextoMineR" # depends on broken package car "pcaBootPlot" # depends on broken package car "ClustGeo" # depends on broken package car "preproviz" # depends on broken package car @@ -1278,7 +1006,6 @@ let "daff" # depends on broken package V8 "dagbag" # build is broken "DAMisc" # depends on broken package nlopt - "datafsm" # depends on broken package caret "dbConnect" # broken build "DBKGrad" # depends on broken package rpanel #"dcmle" # broken build @@ -1293,7 +1020,6 @@ let "DEGraph" # depends on broken package RCytoscape "destiny" # depends on broken package VIM "DiagTest3Grp" # depends on broken package nlopt - "diffHic" # depends on broken package edgeR "difR" # depends on broken package nlopt "DirichletMultinomial" # Build Is Broken "DistatisR" # depends on broken package nlopt @@ -1308,7 +1034,6 @@ let "easyanova" # depends on broken package nlopt "ecd" # depends on broken package polynom "edge" # depends on broken package nlopt - "edgeR" # broken url "eeptools" # depends on broken package nlopt "EffectLiteR" # depends on broken package nlopt "effects" # depends on broken package nlopt @@ -1367,7 +1092,6 @@ let "gmatrix" # depends on broken package cudatoolkit "gMCP" # build is broken "gmum_r" # broken build - "Goslate" # depends on broken package PythonInR "GPC" # broken build "gplm" # depends on broken package nlopt "gpuR" # depends on GPU-specific header files @@ -1687,7 +1411,6 @@ let "sampleSelection" # depends on broken package nlopt "sapFinder" # depends on broken package rTANDEM "sdcMicro" # depends on broken package nlopt - "sdcMicroGUI" # depends on broken package nlopt "SDD" # depends on broken package rpanel "seeg" # depends on broken package nlopt "Sejong" # broken build @@ -1723,7 +1446,6 @@ let "specmine" # depends on broken package caret "splm" # depends on broken package car "spocc" # depends on broken package V8 - "spoccutils" # depends on broken spocc "ssmrob" # depends on broken package nlopt "StatMethRank" # broken build "stepp" # depends on broken package nlopt @@ -1734,7 +1456,6 @@ let "systemfit" # depends on broken package nlopt "TcGSA" # depends on broken package nlopt "TDMR" # depends on broken package nlopt - "TextoMineR" # depends on broken package FactoMineR "TFBSTools" # depends on broken package DirichletMultinomial "tigerstats" # depends on broken package nlopt "TLBC" # depends on broken package caret diff --git a/pkgs/development/r-modules/generate-r-packages.R b/pkgs/development/r-modules/generate-r-packages.R index 4d6a69b27aa0..9aec419c0f8d 100755 --- a/pkgs/development/r-modules/generate-r-packages.R +++ b/pkgs/development/r-modules/generate-r-packages.R @@ -4,7 +4,7 @@ library(parallel) cl <- makeCluster(10) rVersion <- paste(R.Version()$major, strsplit(R.Version()$minor, ".", fixed=TRUE)[[1]][1], sep=".") -snapshotDate <- Sys.Date() +snapshotDate <- Sys.Date()-1 mirrorUrls <- list( bioc=paste0("http://bioconductor.statistik.tu-dortmund.de/packages/", rVersion, "/bioc/src/contrib/") , "bioc-annotation"=paste0("http://bioconductor.statistik.tu-dortmund.de/packages/", rVersion, "/data/annotation/src/contrib/") @@ -45,16 +45,20 @@ nixPrefetch <- function(name, version) { } formatPackage <- function(name, version, sha256, depends, imports, linkingTo) { + name <- ifelse(name == "import", "r_import", name) attr <- gsub(".", "_", name, fixed=TRUE) + options(warn=5) depends <- paste( if (is.na(depends)) "" else gsub("[ \t\n]+", "", depends) , if (is.na(imports)) "" else gsub("[ \t\n]+", "", imports) , if (is.na(linkingTo)) "" else gsub("[ \t\n]+", "", linkingTo) , sep="," ) depends <- unlist(strsplit(depends, split=",", fixed=TRUE)) - depends <- sapply(depends, gsub, pattern="([^ \t\n(]+).*", replacement="\\1") - depends <- sapply(depends, gsub, pattern=".", replacement="_", fixed=TRUE) + depends <- lapply(depends, gsub, pattern="([^ \t\n(]+).*", replacement="\\1") + depends <- lapply(depends, gsub, pattern=".", replacement="_", fixed=TRUE) depends <- depends[depends %in% knownPackages] + depends <- lapply(depends, function(d) ifelse(d == "import", "r_import", d)) + depends <- paste(depends) depends <- paste(sort(unique(depends)), collapse=" ") paste0(" ", attr, " = derive2 { name=\"", name, "\"; version=\"", version, "\"; sha256=\"", sha256, "\"; depends=[", depends, "]; };") } diff --git a/pkgs/development/r-modules/generate-shell.nix b/pkgs/development/r-modules/generate-shell.nix index 43c97e009c7e..126ab7422925 100644 --- a/pkgs/development/r-modules/generate-shell.nix +++ b/pkgs/development/r-modules/generate-shell.nix @@ -1,10 +1,11 @@ -with import <nixpkgs> {}; +with import ../../.. {}; stdenv.mkDerivation { name = "generate-r-packages-shell"; buildCommand = "exit 1"; + buildInputs = [ wget ]; nativeBuildInputs = [ (rWrapper.override { packages = with rPackages; [ diff --git a/pkgs/development/tools/analysis/massif-visualizer/default.nix b/pkgs/development/tools/analysis/massif-visualizer/default.nix index 7342b866a48f..79c826c08fef 100644 --- a/pkgs/development/tools/analysis/massif-visualizer/default.nix +++ b/pkgs/development/tools/analysis/massif-visualizer/default.nix @@ -1,5 +1,5 @@ { stdenv, fetchurl, automoc4, cmake, gettext, perl, pkgconfig -, kdelibs, kgraphviewer }: +, kdelibs4, kgraphviewer }: stdenv.mkDerivation rec { name = "massif-visualizer-${version}"; @@ -11,7 +11,7 @@ stdenv.mkDerivation rec { }; nativeBuildInputs = [ automoc4 cmake gettext perl pkgconfig ]; - buildInputs = [ kdelibs kgraphviewer ]; + buildInputs = [ kdelibs4 kgraphviewer ]; meta = with stdenv.lib; { description = "Tool that visualizes massif data generated by valgrind"; diff --git a/pkgs/development/tools/build-managers/bazel/bin_to_env.patch b/pkgs/development/tools/build-managers/bazel/bin_to_env.patch new file mode 100644 index 000000000000..b65bb681f235 --- /dev/null +++ b/pkgs/development/tools/build-managers/bazel/bin_to_env.patch @@ -0,0 +1,207 @@ +diff -ur a/src/main/java/com/google/devtools/build/lib/analysis/CommandHelper.java b/src/main/java/com/google/devtools/build/lib/analysis/CommandHelper.java +--- a/src/main/java/com/google/devtools/build/lib/analysis/CommandHelper.java 1980-01-01 00:00:00.000000000 -0800 ++++ b/src/main/java/com/google/devtools/build/lib/analysis/CommandHelper.java 2017-02-19 15:37:06.021759347 -0800 +@@ -242,7 +242,7 @@ + private static Artifact buildCommandLineArtifact(RuleContext ruleContext, String command, + String scriptPostFix) { + String scriptFileName = ruleContext.getTarget().getName() + scriptPostFix; +- String scriptFileContents = "#!/bin/bash\n" + command; ++ String scriptFileContents = "#!/usr/bin/env bash\n" + command; + Artifact scriptFileArtifact = FileWriteAction.createFile( + ruleContext, scriptFileName, scriptFileContents, /*executable=*/true); + return scriptFileArtifact; +diff -ur a/src/main/java/com/google/devtools/build/lib/bazel/rules/BazelConfiguration.java b/src/main/java/com/google/devtools/build/lib/bazel/rules/BazelConfiguration.java +--- a/src/main/java/com/google/devtools/build/lib/bazel/rules/BazelConfiguration.java 1980-01-01 00:00:00.000000000 -0800 ++++ b/src/main/java/com/google/devtools/build/lib/bazel/rules/BazelConfiguration.java 2017-02-19 15:37:06.022759356 -0800 +@@ -73,7 +73,7 @@ + return new PathFragment("/usr/local/bin/bash"); + } + } +- return new PathFragment("/bin/bash"); ++ return new PathFragment("bash"); + } + + @Override +diff -ur a/src/main/java/com/google/devtools/build/lib/bazel/rules/java/java_stub_template.txt b/src/main/java/com/google/devtools/build/lib/bazel/rules/java/java_stub_template.txt +--- a/src/main/java/com/google/devtools/build/lib/bazel/rules/java/java_stub_template.txt 1980-01-01 00:00:00.000000000 -0800 ++++ b/src/main/java/com/google/devtools/build/lib/bazel/rules/java/java_stub_template.txt 2017-02-19 15:37:06.022759356 -0800 +@@ -1,4 +1,4 @@ +-#!/bin/bash --posix ++#!/usr/bin/env bash + # Copyright 2014 The Bazel Authors. All rights reserved. + # + # Licensed under the Apache License, Version 2.0 (the "License"); +diff -ur a/src/test/java/com/google/devtools/build/lib/shell/CommandTest.java b/src/test/java/com/google/devtools/build/lib/shell/CommandTest.java +--- a/src/test/java/com/google/devtools/build/lib/shell/CommandTest.java 1980-01-01 00:00:00.000000000 -0800 ++++ b/src/test/java/com/google/devtools/build/lib/shell/CommandTest.java 2017-02-19 15:37:06.022759356 -0800 +@@ -70,7 +70,7 @@ + } + + try { +- new Command(new String[] {"/bin/true", null}).execute(); ++ new Command(new String[] {"/usr/bin/env", "true", null}).execute(); + fail("Should have thrown NullPointerException"); + } catch (NullPointerException npe) { + // good +@@ -185,7 +185,7 @@ + + @Test + public void testNoStreamingInputForCat() throws Exception { +- final Command command = new Command(new String[]{"/bin/cat"}); ++ final Command command = new Command(new String[]{"/usr/bin/env", "cat"}); + ByteArrayInputStream emptyInput = new ByteArrayInputStream(new byte[0]); + ByteArrayOutputStream out = new ByteArrayOutputStream(); + ByteArrayOutputStream err = new ByteArrayOutputStream(); +@@ -198,7 +198,7 @@ + + @Test + public void testNoInputForCat() throws Exception { +- final Command command = new Command(new String[]{"/bin/cat"}); ++ final Command command = new Command(new String[]{"/usr/bin/env", "cat"}); + CommandResult result = command.execute(); + assertTrue(result.getTerminationStatus().success()); + assertThat(new String(result.getStdout(), "UTF-8")).isEmpty(); +@@ -208,7 +208,7 @@ + @Test + public void testProvidedOutputStreamCapturesHelloWorld() throws Exception { + String helloWorld = "Hello, world."; +- final Command command = new Command(new String[]{"/bin/echo", helloWorld}); ++ final Command command = new Command(new String[]{"/usr/bin/env", "echo", helloWorld}); + ByteArrayOutputStream stdOut = new ByteArrayOutputStream(); + ByteArrayOutputStream stdErr = new ByteArrayOutputStream(); + command.execute(Command.NO_INPUT, Command.NO_OBSERVER, stdOut, stdErr); +@@ -250,7 +250,7 @@ + public void testAsynchronousWithOutputStreams() throws Exception { + + final String helloWorld = "Hello, world."; +- final Command command = new Command(new String[]{"/bin/echo", helloWorld}); ++ final Command command = new Command(new String[]{"/usr/bin/env", "echo", helloWorld}); + final ByteArrayInputStream emptyInput = + new ByteArrayInputStream(new byte[0]); + final ByteArrayOutputStream stdOut = new ByteArrayOutputStream(); +@@ -363,12 +363,12 @@ + for (int exit : new int[] { -1, -2, -3 }) { + int expected = 256 + exit; + try { +- String args[] = { "/bin/bash", "-c", "exit " + exit }; ++ String args[] = { "/usr/bin/env", "bash", "-c", "exit " + exit }; + new Command(args).execute(); + fail("Should have exited with status " + expected); + } catch (BadExitStatusException e) { + assertThat(e).hasMessage("Process exited with status " + expected); +- checkCommandElements(e, "/bin/bash", "-c", "exit " + exit); ++ checkCommandElements(e, "/usr/bin/env", "bash", "-c", "exit " + exit); + TerminationStatus status = e.getResult().getTerminationStatus(); + assertFalse(status.success()); + assertTrue(status.exited()); +@@ -471,7 +471,7 @@ + public void testFlushing() throws Exception { + final Command command = new Command( + // On darwin, /bin/sh does not support -n for the echo builtin. +- new String[] {"/bin/bash", "-c", "echo -n Foo; sleep 0.1; echo Bar"}); ++ new String[] {"/usr/bin/env", "bash", "-c", "echo -n Foo; sleep 0.1; echo Bar"}); + // We run this command, passing in a special output stream + // that records when each flush() occurs. + // We test that a flush occurs after writing "Foo" +@@ -541,13 +541,13 @@ + throw new IOException(); + } + }; +- Command command = new Command(new String[] {"/bin/echo", "foo"}); ++ Command command = new Command(new String[] {"/usr/bin/env", "echo", "foo"}); + try { + command.execute(Command.NO_INPUT, Command.NO_OBSERVER, out, out); + fail(); + } catch (AbnormalTerminationException e) { + // Good. +- checkCommandElements(e, "/bin/echo", "foo"); ++ checkCommandElements(e, "/usr/bin/env", "echo", "foo"); + assertThat(e).hasMessage("java.io.IOException"); + } + } +diff -ur a/src/test/java/com/google/devtools/build/lib/shell/InterruptibleTest.java b/src/test/java/com/google/devtools/build/lib/shell/InterruptibleTest.java +--- a/src/test/java/com/google/devtools/build/lib/shell/InterruptibleTest.java 1980-01-01 00:00:00.000000000 -0800 ++++ b/src/test/java/com/google/devtools/build/lib/shell/InterruptibleTest.java 2017-02-19 16:17:42.973071187 -0800 +@@ -60,7 +60,7 @@ + + // We interrupt after 1 sec, so this gives us plenty of time for the library to notice the + // subprocess exit. +- this.command = new Command(new String[] { "/bin/sleep", "20" }); ++ this.command = new Command(new String[] { "/usr/bin/env", "sleep", "20" }); + + interrupter.start(); + } +diff -ur a/src/test/java/com/google/devtools/build/lib/shell/LoadTest.java b/src/test/java/com/google/devtools/build/lib/shell/LoadTest.java +--- a/src/test/java/com/google/devtools/build/lib/shell/LoadTest.java 1980-01-01 00:00:00.000000000 -0800 ++++ b/src/test/java/com/google/devtools/build/lib/shell/LoadTest.java 2017-02-19 15:37:06.022759356 -0800 +@@ -66,7 +66,7 @@ + + @Test + public void testLoad() throws Throwable { +- final Command command = new Command(new String[] {"/bin/cat", ++ final Command command = new Command(new String[] {"/usr/bin/env", "cat", + tempFile.getAbsolutePath()}); + Thread[] threads = new Thread[10]; + List<Throwable> exceptions = Collections.synchronizedList(new ArrayList<Throwable>()); +diff -ur a/src/test/java/com/google/devtools/build/lib/skylark/SkylarkRuleImplementationFunctionsTest.java b/src/test/java/com/google/devtools/build/lib/skylark/SkylarkRuleImplementationFunctionsTest.java +--- a/src/test/java/com/google/devtools/build/lib/skylark/SkylarkRuleImplementationFunctionsTest.java 1980-01-01 00:00:00.000000000 -0800 ++++ b/src/test/java/com/google/devtools/build/lib/skylark/SkylarkRuleImplementationFunctionsTest.java 2017-02-19 15:37:06.022759356 -0800 +@@ -523,7 +523,7 @@ + @SuppressWarnings("unchecked") + List<String> argv = (List<String>) (List<?>) (MutableList) lookup("argv"); + assertThat(argv).hasSize(3); +- assertMatches("argv[0]", "^.*/bash" + OsUtils.executableExtension() + "$", argv.get(0)); ++ assertMatches("argv[0]", "^(.*/)?bash" + OsUtils.executableExtension() + "$", argv.get(0)); + assertThat(argv.get(1)).isEqualTo("-c"); + assertThat(argv.get(2)).isEqualTo("I got the World on a string"); + } +@@ -558,7 +558,7 @@ + @SuppressWarnings("unchecked") + List<String> argv = (List<String>) (List<?>) (MutableList) lookup("argv"); + assertThat(argv).hasSize(3); +- assertMatches("argv[0]", "^.*/bash" + OsUtils.executableExtension() + "$", argv.get(0)); ++ assertMatches("argv[0]", "^(.*/)?bash" + OsUtils.executableExtension() + "$", argv.get(0)); + assertThat(argv.get(1)).isEqualTo("-c"); + assertMatches("argv[2]", "A.*/mytool .*/mytool.sh B.*file3.dat", argv.get(2)); + } +@@ -588,7 +588,7 @@ + @SuppressWarnings("unchecked") + List<String> argv = (List<String>) (List<?>) (MutableList) lookup("argv"); + assertThat(argv).hasSize(2); +- assertMatches("argv[0]", "^.*/bash" + OsUtils.executableExtension() + "$", argv.get(0)); ++ assertMatches("argv[0]", "^(.*/)?bash" + OsUtils.executableExtension() + "$", argv.get(0)); + assertMatches("argv[1]", "^.*/resolve_me[.]script[.]sh$", argv.get(1)); + } + +diff -ur a/src/test/java/com/google/devtools/build/lib/standalone/StandaloneSpawnStrategyTest.java b/src/test/java/com/google/devtools/build/lib/standalone/StandaloneSpawnStrategyTest.java +--- a/src/test/java/com/google/devtools/build/lib/standalone/StandaloneSpawnStrategyTest.java 1980-01-01 00:00:00.000000000 -0800 ++++ b/src/test/java/com/google/devtools/build/lib/standalone/StandaloneSpawnStrategyTest.java 2017-02-19 16:27:27.851399769 -0800 +@@ -162,16 +162,16 @@ + } + + private static String getFalseCommand() { +- return OS.getCurrent() == OS.DARWIN ? "/usr/bin/false" : "/bin/false"; ++ return OS.getCurrent() == OS.DARWIN ? "/usr/bin/false" : "false"; + } + + private static String getTrueCommand() { +- return OS.getCurrent() == OS.DARWIN ? "/usr/bin/true" : "/bin/true"; ++ return OS.getCurrent() == OS.DARWIN ? "/usr/bin/true" : "true"; + } + + @Test + public void testBinEchoPrintsArguments() throws Exception { +- Spawn spawn = createSpawn("/bin/echo", "Hello,", "world."); ++ Spawn spawn = createSpawn("/usr/bin/env", "echo", "Hello,", "world."); + run(spawn); + assertEquals("Hello, world.\n", out()); + assertThat(err()).isEmpty(); +@@ -179,7 +179,7 @@ + + @Test + public void testCommandRunsInWorkingDir() throws Exception { +- Spawn spawn = createSpawn("/bin/pwd"); ++ Spawn spawn = createSpawn("/usr/bin/env", "pwd"); + run(spawn); + assertEquals(executor.getExecRoot() + "\n", out()); + } diff --git a/pkgs/development/tools/build-managers/bazel/default.nix b/pkgs/development/tools/build-managers/bazel/default.nix index 7b98ce7898af..195041f4b28a 100644 --- a/pkgs/development/tools/build-managers/bazel/default.nix +++ b/pkgs/development/tools/build-managers/bazel/default.nix @@ -1,7 +1,6 @@ -{ stdenv, fetchurl, buildFHSUserEnv, writeScript, jdk, zip, unzip, - which, makeWrapper, binutils }: +{ stdenv, fetchurl, jdk, zip, unzip, which, bash, binutils, perl }: -let +stdenv.mkDerivation rec { version = "0.4.4"; @@ -13,60 +12,57 @@ let platforms = platforms.linux; }; - bootstrapEnv = buildFHSUserEnv { - name = "bazel-bootstrap-env"; + name = "bazel-${version}"; - targetPkgs = pkgs: [ ]; - - inherit meta; - }; - - bazelBinary = stdenv.mkDerivation rec { - - name = "bazel-${version}"; - - src = fetchurl { - url = "https://github.com/bazelbuild/bazel/releases/download/${version}/bazel-${version}-dist.zip"; - sha256 = "1fwfahkqi680zyxmdriqj603lpacyh6cg6ff25bn9bkilbfj2anm"; - }; - - sourceRoot = "."; - - patches = [ ./java_stub_template.patch ]; - - packagesNotFromEnv = [ - stdenv.cc stdenv.cc.cc.lib jdk which zip unzip binutils ]; - buildInputs = packagesNotFromEnv ++ [ bootstrapEnv makeWrapper ]; - - buildTimeBinPath = stdenv.lib.makeBinPath packagesNotFromEnv; - buildTimeLibPath = stdenv.lib.makeLibraryPath packagesNotFromEnv; - - runTimeBinPath = stdenv.lib.makeBinPath [ jdk stdenv.cc.cc ]; - runTimeLibPath = stdenv.lib.makeLibraryPath [ stdenv.cc.cc.lib ]; - - buildWrapper = writeScript "build-wrapper.sh" '' - #! ${stdenv.shell} -e - export PATH="${buildTimeBinPath}:$PATH" - export LD_LIBRARY_PATH="${buildTimeLibPath}:$LD_LIBRARY_PATH" - ./compile.sh - ''; - - buildPhase = '' - bazel-bootstrap-env ${buildWrapper} - ''; - - installPhase = '' - mkdir -p $out/bin - cp output/bazel $out/bin/ - wrapProgram $out/bin/bazel \ - --suffix PATH ":" "${runTimeBinPath}" \ - --suffix LD_LIBRARY_PATH ":" "${runTimeLibPath}" - ''; - - dontStrip = true; - dontPatchELF = true; - - inherit meta; + src = fetchurl { + url = "https://github.com/bazelbuild/bazel/releases/download/${version}/bazel-${version}-dist.zip"; + sha256 = "1fwfahkqi680zyxmdriqj603lpacyh6cg6ff25bn9bkilbfj2anm"; }; -in bazelBinary + sourceRoot = "."; + + patches = [ ./bin_to_env.patch ]; + + postPatch = '' + patchShebangs ./compile.sh + for d in scripts src/java_tools src/test src/tools third_party/ijar/test tools; do + patchShebangs $d + done + ''; + + buildInputs = [ + stdenv.cc + stdenv.cc.cc.lib + bash + jdk + zip + unzip + which + binutils + ]; + + # If TMPDIR is in the unpack dir we run afoul of blaze's infinite symlink + # detector (see com.google.devtools.build.lib.skyframe.FileFunction). + # Change this to $(mktemp -d) as soon as we figure out why. + + buildPhase = '' + export TMPDIR=/tmp + ./compile.sh + ''; + + # Build the CPP and Java examples to verify that Bazel works. + doCheck = true; + checkPhase = '' + export TEST_TMPDIR=$(pwd) + ./output/bazel test examples/cpp:hello-success_test + ./output/bazel test examples/java-native/src/test/java/com/example/myproject:hello + ''; + + installPhase = '' + mkdir -p $out/bin + mv output/bazel $out/bin + ''; + + dontStrip = true; + dontPatchELF = true; +} diff --git a/pkgs/development/tools/build-managers/bazel/java_stub_template.patch b/pkgs/development/tools/build-managers/bazel/java_stub_template.patch deleted file mode 100644 index 4e456a78d800..000000000000 --- a/pkgs/development/tools/build-managers/bazel/java_stub_template.patch +++ /dev/null @@ -1,16 +0,0 @@ -commit 5525326e3287243e0e7417de96bf7d58d04b4c8b -Author: Irene Knapp <ireneista@google.com> -Date: Sat Oct 8 19:36:12 2016 -0700 - - Change #!/bin/bash to #!/usr/bin/env bash. - -diff --git a/src/main/java/com/google/devtools/build/lib/bazel/rules/java/java_stub_template.txt b/src/main/java/com/google/devtools/build/lib/bazel/rules/java/java_stub_template.txt -index f77051f..fbf367a 100644 ---- a/src/main/java/com/google/devtools/build/lib/bazel/rules/java/java_stub_template.txt -+++ b/src/main/java/com/google/devtools/build/lib/bazel/rules/java/java_stub_template.txt -@@ -1,4 +1,4 @@ --#!/bin/bash --posix -+#!/usr/bin/env bash - # Copyright 2014 The Bazel Authors. All rights reserved. - # - # Licensed under the Apache License, Version 2.0 (the "License"); diff --git a/pkgs/development/tools/gocode/default.nix b/pkgs/development/tools/gocode/default.nix index 8485a2c346b4..5ec93462dec2 100644 --- a/pkgs/development/tools/gocode/default.nix +++ b/pkgs/development/tools/gocode/default.nix @@ -2,14 +2,14 @@ buildGoPackage rec { name = "gocode-${version}"; - version = "20150904-${stdenv.lib.strings.substring 0 7 rev}"; - rev = "680a0fbae5119fb0dbea5dca1d89e02747a80de0"; + version = "20170219-${stdenv.lib.strings.substring 0 7 rev}"; + rev = "f54790e5d4386b60b80d0c6f9e59db345839d7cc"; goPackagePath = "github.com/nsf/gocode"; src = fetchgit { inherit rev; url = "https://github.com/nsf/gocode"; - sha256 = "1ay2xakz4bcn8r3ylicbj753gjljvv4cj9l4wfly55cj1vjybjpv"; + sha256 = "1x9wdahpdkqwqkipxl5m0sh8d59i389rdvrsyz57slpfd0hapkks"; }; } diff --git a/pkgs/development/tools/hexio/default.nix b/pkgs/development/tools/hexio/default.nix index 6d75c7256ee0..7078e2a37271 100644 --- a/pkgs/development/tools/hexio/default.nix +++ b/pkgs/development/tools/hexio/default.nix @@ -1,18 +1,19 @@ -{ stdenv, fetchFromGitHub, fetchurl, python, pcsclite, pth, glibc }: +{ stdenv, fetchFromGitHub, fetchurl, python, pcsclite, pth }: stdenv.mkDerivation rec { pname = "hexio"; name = "${pname}-${version}"; - version = "201605"; + version = "1.0-RC1"; src = fetchFromGitHub { sha256 = "08jxkdi0gjsi8s793f9kdlad0a58a0xpsaayrsnpn9bpmm5cgihq"; - rev = "f6f963bd0fcd2808977e0ad82dcb3100691cdd7c"; + rev = "version-${version}"; owner = "vanrein"; repo = "hexio"; }; - buildInputs = [ python pcsclite pth glibc ]; + propagatedBuildInputs = [ python ]; + buildInputs = [ pcsclite pth ]; patchPhase = '' substituteInPlace Makefile \ diff --git a/pkgs/development/tools/misc/global/default.nix b/pkgs/development/tools/misc/global/default.nix index 664b83b7e7c4..bd111c4ffbbd 100644 --- a/pkgs/development/tools/misc/global/default.nix +++ b/pkgs/development/tools/misc/global/default.nix @@ -1,5 +1,5 @@ { fetchurl, stdenv, libtool, makeWrapper -, coreutils, ctags, ncurses, pythonPackages, sqlite, pkgconfig +, coreutils, ctags, ncurses, pythonPackages, sqlite, universal-ctags, pkgconfig }: stdenv.mkDerivation rec { @@ -23,6 +23,7 @@ stdenv.mkDerivation rec { "--with-ncurses=${ncurses.dev}" "--with-sqlite3=${sqlite.dev}" "--with-exuberant-ctags=${ctags}/bin/ctags" + "--with-universal-ctags=${universal-ctags}/bin/ctags" "--with-posix-sort=${coreutils}/bin/sort" ]; diff --git a/pkgs/development/tools/misc/lttng-tools/default.nix b/pkgs/development/tools/misc/lttng-tools/default.nix index 827c1d0e67f8..733399ebf7d6 100644 --- a/pkgs/development/tools/misc/lttng-tools/default.nix +++ b/pkgs/development/tools/misc/lttng-tools/default.nix @@ -1,19 +1,16 @@ -{ stdenv, fetchurl, popt, libuuid, liburcu, lttng-ust, kmod, libxml2 }: +{ stdenv, fetchurl, pkgconfig, popt, libuuid, liburcu, lttng-ust, kmod, libxml2 }: stdenv.mkDerivation rec { - name = "lttng-tools-2.5.2"; + name = "lttng-tools-${version}"; + version = "2.9.3"; src = fetchurl { url = "https://lttng.org/files/lttng-tools/${name}.tar.bz2"; - sha256 = "0g931f90pl9bfgsxihrj0zlw9ivyaplbiw28axkscmjvzd1d6lhz"; + sha256 = "0kmj0ya5625mn2khbnghhsdmjr66xs0mhrvbrsdvrp3pm6mbmrm6"; }; - buildInputs = [ popt libuuid liburcu lttng-ust libxml2 ]; - - prePatch = '' - sed -e "s|/sbin/modprobe|${kmod}/bin/modprobe|g" \ - -i src/bin/lttng-sessiond/modprobe.c - ''; + nativeBuildInputs = [ pkgconfig ]; + buildInputs = [ popt libuuid liburcu lttng-ust libxml2 kmod ]; meta = with stdenv.lib; { description = "Tracing tools (kernel + user space) for Linux"; diff --git a/pkgs/development/tools/misc/lttng-ust/default.nix b/pkgs/development/tools/misc/lttng-ust/default.nix index 38fe4d47e062..2d3fc6560524 100644 --- a/pkgs/development/tools/misc/lttng-ust/default.nix +++ b/pkgs/development/tools/misc/lttng-ust/default.nix @@ -12,11 +12,12 @@ # Debian builds with std.h (systemtap). stdenv.mkDerivation rec { - name = "lttng-ust-2.5.1"; + name = "lttng-ust-${version}"; + version = "2.9.0"; src = fetchurl { url = "https://lttng.org/files/lttng-ust/${name}.tar.bz2"; - sha256 = "0ij5p2j8q63zqnj3i3hgymgib717r2bq07ymy5cwdra1hvby5ngv"; + sha256 = "1bsxxaqhkh9bwr1ll5acb41hvis2lhkl00h5ra2wdps27y31lm2d"; }; buildInputs = [ liburcu ]; diff --git a/pkgs/development/tools/ocaml/camlp4/default.nix b/pkgs/development/tools/ocaml/camlp4/default.nix index a257a88287cd..cedd35ae6ade 100644 --- a/pkgs/development/tools/ocaml/camlp4/default.nix +++ b/pkgs/development/tools/ocaml/camlp4/default.nix @@ -43,6 +43,8 @@ stdenv.mkDerivation rec { installTargets = "install install-META"; + dontStrip = true; + meta = with stdenv.lib; { description = "A software system for writing extensible parsers for programming languages"; homepage = https://github.com/ocaml/camlp4; diff --git a/pkgs/development/tools/ocaml/ocamlify/default.nix b/pkgs/development/tools/ocaml/ocamlify/default.nix index d5dd0c19d987..2876464ab502 100644 --- a/pkgs/development/tools/ocaml/ocamlify/default.nix +++ b/pkgs/development/tools/ocaml/ocamlify/default.nix @@ -14,6 +14,8 @@ stdenv.mkDerivation { buildPhase = "ocaml setup.ml -build"; installPhase = "ocaml setup.ml -install"; + dontStrip = true; + meta = { homepage = http://forge.ocamlcore.org/projects/ocamlmod/ocamlmod; description = "Generate OCaml modules from source files"; diff --git a/pkgs/development/tools/ocaml/ocamlmod/default.nix b/pkgs/development/tools/ocaml/ocamlmod/default.nix index 0b92a45153c1..b24be7ba6285 100644 --- a/pkgs/development/tools/ocaml/ocamlmod/default.nix +++ b/pkgs/development/tools/ocaml/ocamlmod/default.nix @@ -15,6 +15,8 @@ stdenv.mkDerivation rec { buildPhase = "ocaml setup.ml -build"; installPhase = "ocaml setup.ml -install"; + dontStrip = true; + meta = { homepage = http://forge.ocamlcore.org/projects/ocamlmod/ocamlmod; description = "Generate OCaml modules from source files"; diff --git a/pkgs/development/tools/ocaml/utop/default.nix b/pkgs/development/tools/ocaml/utop/default.nix index b8740bc37932..9b41a06c9355 100644 --- a/pkgs/development/tools/ocaml/utop/default.nix +++ b/pkgs/development/tools/ocaml/utop/default.nix @@ -3,12 +3,12 @@ }: stdenv.mkDerivation rec { - version = "1.19.2"; + version = "1.19.3"; name = "utop-${version}"; src = fetchurl { url = "https://github.com/diml/utop/archive/${version}.tar.gz"; - sha256 = "0hxybkqmrh0sz1yyyrgzdmxp46gda4vk22pv07s0qpfg2dpv56jh"; + sha256 = "16z02vp9n97iax4fqpbi7v86r75vbabxvnd1rirh8w2miixs1g4x"; }; buildInputs = [ ocaml findlib ocamlbuild makeWrapper cppo camlp4 ppx_tools ]; @@ -18,7 +18,7 @@ stdenv.mkDerivation rec { createFindlibDestdir = true; configureFlags = [ "--enable-camlp4" ] - ++ stdenv.lib.optional (ppx_tools != null) "--enable-interact"; + ++ stdenv.lib.optional (ppx_tools != null && !stdenv.lib.versionAtLeast ocaml.version "4.04") "--enable-interact"; buildPhase = '' make diff --git a/pkgs/development/tools/profiling/heaptrack/default.nix b/pkgs/development/tools/profiling/heaptrack/default.nix index 378073d16c00..69aa84951a4e 100644 --- a/pkgs/development/tools/profiling/heaptrack/default.nix +++ b/pkgs/development/tools/profiling/heaptrack/default.nix @@ -1,5 +1,8 @@ -{ stdenv, fetchFromGitHub, cmake, zlib, boost162, libunwind, - elfutils, qt5, kde5, sparsehash }: +{ + stdenv, fetchFromGitHub, cmake, extra-cmake-modules, + zlib, boost162, libunwind, elfutils, sparsehash, + qtbase, kio, kitemmodels, threadweaver, kconfigwidgets, kcoreaddons, +}: stdenv.mkDerivation rec { name = "heaptrack-${version}"; @@ -12,9 +15,11 @@ stdenv.mkDerivation rec { sha256 = "0dqchd2r4khv9gzj4n0qjii2nqygkj5jclkji8jbvivx5qwsqznc"; }; - buildInputs = [ cmake zlib boost162 libunwind elfutils sparsehash - qt5.ecm qt5.qtbase kde5.kio kde5.kitemmodels - kde5.threadweaver kde5.kconfigwidgets kde5.kcoreaddons ]; + nativeBuildInputs = [ cmake extra-cmake-modules ]; + buildInputs = [ + zlib boost162 libunwind elfutils sparsehash + qtbase kio kitemmodels threadweaver kconfigwidgets kcoreaddons + ]; meta = with stdenv.lib; { description = "Heap memory profiler for Linux"; diff --git a/pkgs/development/tools/scalafmt/default.nix b/pkgs/development/tools/scalafmt/default.nix index af7854b33dcb..0e8c656fbb8b 100644 --- a/pkgs/development/tools/scalafmt/default.nix +++ b/pkgs/development/tools/scalafmt/default.nix @@ -1,13 +1,13 @@ { stdenv, fetchurl, unzip, jre }: stdenv.mkDerivation rec { - version = "0.5.6"; + version = "0.5.7"; baseName = "scalafmt"; name = "${baseName}-${version}"; src = fetchurl { url = "https://github.com/olafurpg/scalafmt/releases/download/v${version}/${baseName}.tar.gz"; - sha256 = "17fwli6jlsh4q7nqgqmqmhb368hpmj1yg9fdsybk8yq57hb24bwq"; + sha256 = "1jg2yhnzlyxg735b6qcj3pgnr5q2i361ql27qmxk977al24v5w8i"; }; unpackPhase = "tar xvzf $src"; diff --git a/pkgs/development/tools/tora/default.nix b/pkgs/development/tools/tora/default.nix index 9f8f2df358a5..350cda4e2630 100644 --- a/pkgs/development/tools/tora/default.nix +++ b/pkgs/development/tools/tora/default.nix @@ -1,4 +1,4 @@ -{ stdenv, lib, fetchFromGitHub, cmake, ecm, makeQtWrapper +{ stdenv, lib, fetchFromGitHub, cmake, extra-cmake-modules, makeQtWrapper , boost, doxygen, openssl, mysql, postgresql, graphviz, loki, qscintilla, qtbase }: let @@ -18,7 +18,7 @@ in stdenv.mkDerivation rec { enableParallelBuilding = true; buildInputs = [ - cmake ecm makeQtWrapper + cmake extra-cmake-modules makeQtWrapper boost doxygen graphviz loki mysql openssl postgresql qscintillaLib qtbase ]; diff --git a/pkgs/development/tools/xcbuild/default.nix b/pkgs/development/tools/xcbuild/default.nix index 0fc56827de83..f2be61bd2139 100644 --- a/pkgs/development/tools/xcbuild/default.nix +++ b/pkgs/development/tools/xcbuild/default.nix @@ -32,7 +32,7 @@ in stdenv.mkDerivation rec { ''; # Avoid a glibc >= 2.25 deprecation warning that gets fatal via -Werror. - postPatch = '' + postPatch = stdenv.lib.optionalString (!stdenv.isDarwin) '' sed 1i'#include <sys/sysmacros.h>' \ -i Libraries/xcassets/Headers/xcassets/Slot/SystemVersion.h ''; diff --git a/pkgs/development/tools/yarn/default.nix b/pkgs/development/tools/yarn/default.nix index 7d93ea1fcab4..4af3ab5c4b93 100644 --- a/pkgs/development/tools/yarn/default.nix +++ b/pkgs/development/tools/yarn/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "yarn-${version}"; - version = "0.19.1"; + version = "0.20.3"; src = fetchzip { url = "https://github.com/yarnpkg/yarn/releases/download/v${version}/yarn-v${version}.tar.gz"; - sha256 = "1006ijhig9pcmrlsqfwxhn4i78bcji2grvkl4hz64fmqv6rh783s"; + sha256 = "1w4n05155rlkyv9k43fs0zrl04pri89vbi7rzpwmcg6zfxz273lw"; }; buildInputs = [makeWrapper nodejs]; diff --git a/pkgs/development/web/nodejs/v7.nix b/pkgs/development/web/nodejs/v7.nix index 659aa47985aa..53ed893794c2 100644 --- a/pkgs/development/web/nodejs/v7.nix +++ b/pkgs/development/web/nodejs/v7.nix @@ -10,11 +10,11 @@ let baseName = if enableNpm then "nodejs" else "nodejs-slim"; in stdenv.mkDerivation (nodejs // rec { - version = "7.2.1"; + version = "7.6.0"; name = "${baseName}-${version}"; src = fetchurl { url = "https://nodejs.org/download/release/v${version}/node-v${version}.tar.xz"; - sha256 = "03fqv6k8y42ldnrz4iirhwg6wdyw8z95h9h40igiriicbnm072y0"; + sha256 = "1adldbhza422951i9rk69x75apj9rdqlx1pm8ybb9w7zjqk09ybg"; }; }) diff --git a/pkgs/games/ja2-stracciatella/default.nix b/pkgs/games/ja2-stracciatella/default.nix new file mode 100644 index 000000000000..682021eee699 --- /dev/null +++ b/pkgs/games/ja2-stracciatella/default.nix @@ -0,0 +1,19 @@ +{ stdenv, fetchFromGitHub, SDL }: + +stdenv.mkDerivation rec { + version = "0.15.1"; + name = "ja2-stracciatella-${version}"; + src = fetchFromGitHub { + owner = "ja2-stracciatella"; + repo = "ja2-stracciatella"; + rev = "v${version}"; + sha256 = "0r7j6k7412b3qfb1rnh80s55zhnriw0v03zn5bp3spcqjxh4xhv1"; + }; + enableParallelBuilding = true; + buildInputs = [ SDL ]; + meta = { + description = "Jagged Alliance 2, with community fixes"; + license = "SFI Source Code license agreement"; + homepage = "https://ja2-stracciatella.github.io/"; + }; +} diff --git a/pkgs/games/speed-dreams/default.nix b/pkgs/games/speed-dreams/default.nix index e6105eab95b9..cb7a345900af 100644 --- a/pkgs/games/speed-dreams/default.nix +++ b/pkgs/games/speed-dreams/default.nix @@ -1,29 +1,62 @@ { fetchurl, stdenv, mesa, freeglut, libX11, plib, openal, freealut, libXrandr, xproto, -libXext, libSM, libICE, libXi, libXt, libXrender, libXxf86vm, -libpng, zlib, bash, p7zip, SDL, enet, libjpeg, cmake}: +libXext, libSM, libICE, libXi, libXt, libXrender, libXxf86vm, openscenegraph, expat, +libpng, zlib, bash, SDL2, enet, libjpeg, cmake, pkgconfig, libvorbis}: stdenv.mkDerivation rec { - version = "2.0.0-a3-r3412"; + version = "2.2.1-r6404"; name = "speed-dreams-${version}"; src = fetchurl { - url = "mirror://sourceforge/speed-dreams/2.0.0/${name}-src.tar.7z"; - sha256 = "0hn5fgn90wmd1xha1la133harx47qc647f4zj8hfdvd7wb3kpjab"; + url = "mirror://sourceforge/speed-dreams/2.2.1/speed-dreams-src-base-${version}.tar.xz"; + sha256 = "0347sk8xbdsyvl48qybbycd7hvzsx5b37zzjx1yx73nzddhmlpbx"; }; - unpackPhase = '' - 7z e -so ${src} | tar -x - cd */ + cars-and-tracks = fetchurl { + url = "mirror://sourceforge/speed-dreams/2.2.1/speed-dreams-src-hq-cars-and-tracks-${version}.tar.xz"; + sha256 = "1h50l110n42nrq6j3kcyhi3swgmrjcg979vb6h0zsf46afwv0z3q"; + }; + + more-cars-and-tracks = fetchurl { + url = "mirror://sourceforge/speed-dreams/2.2.1/speed-dreams-src-more-hq-cars-and-tracks-${version}.tar.xz"; + sha256 = "03m3gwd03jqgsfjdglzmrv613cp4gh50i63fwmnwl282zhxydcwd"; + }; + + wip-cars-and-tracks = fetchurl { + url = "mirror://sourceforge/speed-dreams/2.2.1/speed-dreams-src-wip-cars-and-tracks-${version}.tar.xz"; + sha256 = "0ysk756rd294xzpwvmjh0mb229ngzrc4ry9lpyhyak98rbcp9hxm"; + }; + + sourceRoot = "."; + + postUnpack = '' + echo Unpacking data + tar -xf ${cars-and-tracks} + tar -xf ${more-cars-and-tracks} + tar -xf ${wip-cars-and-tracks} ''; - # Order important; it wants libpng12 and some x libs propagate libpng15 - buildInputs = [ libpng mesa freeglut libX11 plib openal freealut libXrandr xproto - libXext libSM libICE libXi libXt libXrender libXxf86vm zlib bash - p7zip SDL enet libjpeg cmake ]; + preBuild = '' + make -C src/libs/portability + make -C src/libs/portability portability.o + ar -rv "$(echo lib*/games/speed-dreams*/lib)"/libportability_static.a src/libs/portability/CMakeFiles/portability.dir/portability.cpp.o + export NIX_LDFLAGS="$NIX_LDFLAGS -L$(echo $PWD/lib*/games/speed-dreams*/lib) -lexpat" + echo "libportability_static.a built" + ''; - installTargets = "install"; + postInstall = '' + mkdir "$out/bin" + for i in "$out"/games/*; do + echo '#!${stdenv.shell}' >> "$out/bin/$(basename "$i")" + echo "$i"' "$@"' >> "$out/bin/$(basename "$i")" + chmod a+x "$out/bin/$(basename "$i")" + done + ''; + + nativeBuildInputs = [ pkgconfig cmake ]; - dontUseCmakeBuildDir=true; + buildInputs = [ libpng mesa freeglut libX11 plib openal freealut libXrandr xproto + libXext libSM libICE libXi libXt libXrender libXxf86vm zlib bash expat + SDL2 enet libjpeg openscenegraph libvorbis ]; meta = { description = "Car racing game - TORCS fork with more experimental approach"; diff --git a/pkgs/games/steam/runtime-wrapped.nix b/pkgs/games/steam/runtime-wrapped.nix index d9d6e0ecf0d0..1988463d61a6 100644 --- a/pkgs/games/steam/runtime-wrapped.nix +++ b/pkgs/games/steam/runtime-wrapped.nix @@ -78,7 +78,7 @@ let SDL2_ttf SDL2_mixer gstreamer - gst_plugins_base + gst-plugins-base ] ++ lib.optional (!newStdcpp) gcc48.cc; overridePkgs = with pkgs; [ diff --git a/pkgs/games/warmux/gcc-fix.patch b/pkgs/games/warmux/gcc-fix.patch index 913b912af7d4..6b683aa782f4 100644 --- a/pkgs/games/warmux/gcc-fix.patch +++ b/pkgs/games/warmux/gcc-fix.patch @@ -45,7 +45,7 @@ Author: Robin Gloster <mail@glob.in> { if (!show) - return false; -+ return nullptr; ++ return NULL; const std::vector<PolygonItem *>& items = poly->GetItem(); WeaponMenuItem * tmp; Interface::GetInstance()->SetCurrentOverflyWeapon(NULL); diff --git a/pkgs/misc/emulators/retroarch/cores.nix b/pkgs/misc/emulators/retroarch/cores.nix index 50f73d6f4e6e..8d02fbfc9bd3 100644 --- a/pkgs/misc/emulators/retroarch/cores.nix +++ b/pkgs/misc/emulators/retroarch/cores.nix @@ -62,6 +62,45 @@ in buildPhase = "make"; }; + beetle-pce-fast = (mkLibRetroCore rec { + core = "mednafen-pce-fast"; + src = fetchRetro { + repo = "beetle-pce-fast-libretro"; + rev = "6e2eaf75da2eb3dfcf2fd64413f471c8c90cf885"; + sha256 = "0m946108wzawg0c4xvqpv6yzfmjngz6lji5hn4swgk0z5f2bj5a5"; + }; + description = "Port of Mednafen's PC Engine core to libretro"; + }).override { + buildPhase = "make"; + name = "beetle-pce-fast"; + }; + + beetle-psx = (mkLibRetroCore rec { + core = "mednafen-psx"; + src = fetchRetro { + repo = "beetle-psx-libretro"; + rev = "20c9b0eb0062b8768cc40aca0e2b2d626f1002a2"; + sha256 = "192xzvdbjjqlxrnxxn45hmrr6yjpxw3gapkbax6nhrabnxhva43k"; + }; + description = "Port of Mednafen's PSX Engine core to libretro"; + }).override { + buildPhase = "make"; + name = "beetle-psx"; + }; + + beetle-saturn = (mkLibRetroCore rec { + core = "mednafen-saturn"; + src = fetchRetro { + repo = "beetle-saturn-libretro"; + rev = "bb5d0c126feb25cf980f5cc1fc57d6a5a6f6e7ab"; + sha256 = "0bnsdy27378b71y6aa65k4jxxy2xw6ky2ici3z53hkky2jnnjq0b"; + }; + description = "Port of Mednafen's Saturn core to libretro"; + }).override { + buildPhase = "make"; + name = "beetle-saturn"; + }; + bsnes-mercury = let bname = "bsnes-mercury"; in (mkLibRetroCore rec { core = bname + "-accuracy"; src = fetchRetro { @@ -146,42 +185,6 @@ in extraBuildInputs = [ alsaLib portaudio python27 ]; }; - mednafen-pce-fast = (mkLibRetroCore rec { - core = "mednafen-pce-fast"; - src = fetchRetro { - repo = "beetle-pce-fast-libretro"; - rev = "6e2eaf75da2eb3dfcf2fd64413f471c8c90cf885"; - sha256 = "0m946108wzawg0c4xvqpv6yzfmjngz6lji5hn4swgk0z5f2bj5a5"; - }; - description = "Port of Mednafen's PC Engine core to libretro"; - }).override { - buildPhase = "make"; - }; - - mednafen-psx = (mkLibRetroCore rec { - core = "mednafen-psx"; - src = fetchRetro { - repo = "beetle-psx-libretro"; - rev = "20c9b0eb0062b8768cc40aca0e2b2d626f1002a2"; - sha256 = "192xzvdbjjqlxrnxxn45hmrr6yjpxw3gapkbax6nhrabnxhva43k"; - }; - description = "Port of Mednafen's PSX Engine core to libretro"; - }).override { - buildPhase = "make"; - }; - - mednafen-saturn = (mkLibRetroCore rec { - core = "mednafen-saturn"; - src = fetchRetro { - repo = "beetle-saturn-libretro"; - rev = "bb5d0c126feb25cf980f5cc1fc57d6a5a6f6e7ab"; - sha256 = "0bnsdy27378b71y6aa65k4jxxy2xw6ky2ici3z53hkky2jnnjq0b"; - }; - description = "Port of Mednafen's Saturn core to libretro"; - }).override { - buildPhase = "make"; - }; - mgba = mkLibRetroCore rec { core = "mgba"; src = fetchRetro { diff --git a/pkgs/misc/jackaudio/unstable.nix b/pkgs/misc/jackaudio/unstable.nix index deda40e7cba2..a2026dacc93a 100644 --- a/pkgs/misc/jackaudio/unstable.nix +++ b/pkgs/misc/jackaudio/unstable.nix @@ -24,13 +24,13 @@ let in stdenv.mkDerivation rec { name = "${prefix}jack2-unstable-${version}"; - version = "2016-08-18"; + version = "2017-02-23"; src = fetchFromGitHub { owner = "jackaudio"; repo = "jack2"; - rev = "f2ece2418c875eb7e7ac3d25fbb484ddda47ab46"; - sha256 = "0cvb0m6qz3k8a5njwyw65l4y3izi2rsh512hv5va97kjc6wzzx4j"; + rev = "4cf826c82c8f865c281833f92f8182d457277b3a"; + sha256 = "100pkc324m57ci3fb99d3api6wh6g58lya6ssly9hxyhdsa3i7bk"; }; nativeBuildInputs = [ pkgconfig python makeWrapper ]; diff --git a/pkgs/misc/lilypond/unstable.nix b/pkgs/misc/lilypond/unstable.nix new file mode 100644 index 000000000000..d16102df9278 --- /dev/null +++ b/pkgs/misc/lilypond/unstable.nix @@ -0,0 +1,20 @@ +{ stdenv, fetchurl, guile, rsync, lilypond }: + +with stdenv.lib; + +overrideDerivation lilypond (p: rec { + majorVersion = "2.19"; + minorVersion = "24"; + version="${majorVersion}.${minorVersion}"; + name = "lilypond-${version}"; + + src = fetchurl { + url = "http://download.linuxaudio.org/lilypond/sources/v${majorVersion}/lilypond-${version}.tar.gz"; + sha256 = "0wd57swrfc2nvkj10ipdbhq6gpnckiafg2b2kpd8aydsyp248iln"; + }; + + configureFlags = [ "--disable-documentation" "--with-fonts-dir=${p.urwfonts}"]; + + buildInputs = p.buildInputs ++ [ rsync ]; + +}) diff --git a/pkgs/misc/long-shebang/default.nix b/pkgs/misc/long-shebang/default.nix index 2aac5556e2f5..1a064e8c627d 100644 --- a/pkgs/misc/long-shebang/default.nix +++ b/pkgs/misc/long-shebang/default.nix @@ -1,11 +1,11 @@ { stdenv, fetchurl }: let - version = "1.1.0"; + version = "1.2.0"; in stdenv.mkDerivation { name = "long-shebang-${version}"; src = fetchurl { url = "https://github.com/shlevy/long-shebang/releases/download/v${version}/long-shebang-${version}.tar.xz"; - sha256 = "0rlyibf7pczjfsi91nl1n5vri2vqibmvyyy070jaw3wb0wjm565a"; + sha256 = "10h29w1c5bm0rlscyjiz1kzb134rn92as6v4y7i8mhhmdh6mmf79"; }; meta = { diff --git a/pkgs/misc/themes/blackbird/default.nix b/pkgs/misc/themes/blackbird/default.nix index 5c2d68dfd96e..17aa60162ad6 100644 --- a/pkgs/misc/themes/blackbird/default.nix +++ b/pkgs/misc/themes/blackbird/default.nix @@ -2,14 +2,14 @@ stdenv.mkDerivation rec { pname = "Blackbird"; - version = "2016-07-04"; + version = "2017-02-20"; name = "${pname}-${version}"; src = fetchFromGitHub { repo = "${pname}"; owner = "shimmerproject"; - rev = "ab4a30ee5110c59241b739e7c54956c3244e5b2a"; - sha256 = "1qy32n21bqq3zwn9di01fbiqv67cqr9n7jmbpcmn9v8yb5p572w3"; + rev = "51eaa1853675866e2e4bd026876162b35ab1a196"; + sha256 = "06d040s5jmw9v6fkif6zjcd3lp56dmvwchcwflinc165iazbp5n2"; }; nativeBuildInputs = [ autoreconfHook ]; @@ -20,7 +20,7 @@ stdenv.mkDerivation rec { description = "Dark Desktop Suite for Gtk, Xfce and Metacity"; homepage = http://github.com/shimmerproject/Blackbird; license = with stdenv.lib.licenses; [ gpl2Plus cc-by-nc-sa-30 ]; - maintainers = [ stdenv.lib.maintainers.romildo ]; platforms = stdenv.lib.platforms.linux; + maintainers = [ stdenv.lib.maintainers.romildo ]; }; } diff --git a/pkgs/misc/themes/greybird/default.nix b/pkgs/misc/themes/greybird/default.nix index 43e5a3210f57..634ea743e322 100644 --- a/pkgs/misc/themes/greybird/default.nix +++ b/pkgs/misc/themes/greybird/default.nix @@ -2,14 +2,14 @@ stdenv.mkDerivation rec { name = "${pname}-${version}"; - pname = "Greybird"; - version = "2016-11-15"; + pname = "greybird"; + version = "2017-02-17"; src = fetchFromGitHub { owner = "shimmerproject"; repo = "${pname}"; - rev = "0a0853fa1de7545392f32aff33d95a8a1f6dca9e"; - sha256 = "0i9yvd265783pqij6rjh7pllw0l28v975mrahykcwvn9chq8rrqf"; + rev = "46afa0f1566207c07ce15633d3a4ca12075afcb7"; + sha256 = "0sxpj8k0dlgh1k1w1hnpy94rvh7h6mj9vrhldmhc128kncdcxk3j"; }; nativeBuildInputs = [ autoreconfHook sass glib libxml2 gdk_pixbuf librsvg ]; diff --git a/pkgs/misc/themes/gtk2/oxygen-gtk/default.nix b/pkgs/misc/themes/gtk2/oxygen-gtk/default.nix deleted file mode 100644 index ad13b5f17ab6..000000000000 --- a/pkgs/misc/themes/gtk2/oxygen-gtk/default.nix +++ /dev/null @@ -1,24 +0,0 @@ -{ stdenv, fetchurl, - cmake, dbus_glib, glib, gtk2, gdk_pixbuf, pkgconfig, xorg }: - -stdenv.mkDerivation rec { - version = "1.4.6"; - name = "oxygen-gtk2-${version}"; - - src = fetchurl { - url = "mirror://kde/stable/oxygen-gtk2/${version}/src/${name}.tar.bz2"; - sha256 = "09mz4szsz3yswbj0nbw6qzlc5bc4id0f9r6ifm60b5nc8x1l72d2"; - }; - - buildInputs = [ cmake dbus_glib glib gtk2 gdk_pixbuf - pkgconfig xorg.libXau xorg.libXdmcp xorg.libpthreadstubs - xorg.libxcb xorg.pixman ]; - - meta = with stdenv.lib; { - description = "Port of the default KDE widget theme (Oxygen), to gtk"; - homepage = https://projects.kde.org/projects/playground/artwork/oxygen-gtk; - license = licenses.lgpl2; - maintainers = [ maintainers.goibhniu ]; - platforms = platforms.linux; - }; -} diff --git a/pkgs/misc/themes/gtk3/oxygen-gtk3/default.nix b/pkgs/misc/themes/gtk3/oxygen-gtk3/default.nix deleted file mode 100644 index 2cceee62447d..000000000000 --- a/pkgs/misc/themes/gtk3/oxygen-gtk3/default.nix +++ /dev/null @@ -1,23 +0,0 @@ -{ stdenv, fetchurl -, cmake, dbus_glib, glib, gtk3, gdk_pixbuf, pkgconfig, xorg }: - -stdenv.mkDerivation rec { - version = "1.4.1"; - name = "oxygen-gtk3-${version}"; - - src = fetchurl { - url = "mirror://kde/stable/oxygen-gtk3/${version}/src/${name}.tar.bz2"; - sha256 = "0pd7wjzh5xgd24yg6b2avaiz1aq6rmh13d7c0jclffkmhmy24r0f"; - }; - - buildInputs = [ cmake dbus_glib glib gtk3 gdk_pixbuf - pkgconfig xorg.libXau xorg.libXdmcp xorg.libpthreadstubs - xorg.libxcb xorg.pixman ]; - - meta = with stdenv.lib; { - description = "Port of the default KDE widget theme (Oxygen), to gtk 3"; - homepage = https://projects.kde.org/projects/playground/artwork/oxygen-gtk; - license = licenses.lgpl2; - platforms = platforms.linux; - }; -} diff --git a/pkgs/misc/themes/numix/default.nix b/pkgs/misc/themes/numix/default.nix index 740bafe8bd44..c2f6fb210586 100644 --- a/pkgs/misc/themes/numix/default.nix +++ b/pkgs/misc/themes/numix/default.nix @@ -3,14 +3,14 @@ }: stdenv.mkDerivation rec { - version = "2016-11-19"; + version = "2017-02-15"; name = "numix-gtk-theme-${version}"; src = fetchFromGitHub { repo = "numix-gtk-theme"; owner = "numixproject"; - rev = "0e4a840bd1ec434ba660418caaa59ada05d8660e"; - sha256 = "09nacjwrl5k3dgji2smdv6q5v23qjzfayic044bnjfm5d3p3yf6n"; + rev = "f25d7e04353543e03fd155f4d9dfa80fc6b551f2"; + sha256 = "0n57airi1kgg754099sdq40bb0mbp4my385fvslnsjv5d4h8jhvq"; }; nativeBuildInputs = [ sass glib libxml2 gdk_pixbuf ]; diff --git a/pkgs/misc/themes/qtcurve/default.nix b/pkgs/misc/themes/qtcurve/default.nix deleted file mode 100644 index cc11aab81cd8..000000000000 --- a/pkgs/misc/themes/qtcurve/default.nix +++ /dev/null @@ -1,43 +0,0 @@ -{ stdenv, fetchurl, automoc4, cmake, gettext, perl, pkgconfig -, gtk2, kde_workspace, kdelibs # Toolkit dependencies -, libpthreadstubs, libXdmcp, libxcb, xorg # X11 dependencies -}: - -stdenv.mkDerivation { - name = "qtcurve-1.8.18"; - src = fetchurl { - url = "https://github.com/QtCurve/qtcurve/archive/1.8.18.tar.gz"; - sha256 = "19kk11hgi6md1cl0hr0pklcczbl66jczahlkf5fr8j59ljgpr6c5"; - }; - - nativeBuildInputs = [ automoc4 cmake gettext perl pkgconfig ]; - - buildInputs = [ - gtk2 - kde_workspace - kdelibs - libpthreadstubs - libXdmcp - libxcb - pkgconfig - xorg.libxshmfence - ]; - - patches = [ - ./qtcurve-1.8.18-install-paths.patch - ./qtcurve-1.8.18-toolbar-alpha.patch - ]; - - cmakeFlags = '' - -DENABLE_QT5=OFF - -DQTC_QT4_ENABLE_KWIN=ON - ''; - - meta = with stdenv.lib; { - homepage = https://github.com/QtCurve/qtcurve; - description = "Widget styles for Qt4/KDE4 and gtk2"; - platforms = platforms.linux; - license = licenses.lgpl21Plus; - maintainers = [ maintainers.ttuegel ]; - }; -} diff --git a/pkgs/misc/themes/qtcurve/qtcurve-1.8.18-install-paths.patch b/pkgs/misc/themes/qtcurve/qtcurve-1.8.18-install-paths.patch deleted file mode 100644 index 345ac25bbbb0..000000000000 --- a/pkgs/misc/themes/qtcurve/qtcurve-1.8.18-install-paths.patch +++ /dev/null @@ -1,24 +0,0 @@ -diff --git a/CMakeLists.txt b/CMakeLists.txt -index b2be588..4cb9115 100644 ---- a/CMakeLists.txt -+++ b/CMakeLists.txt -@@ -116,6 +116,7 @@ if(ENABLE_GTK2) - find_package(PkgConfig REQUIRED) - unset(__pkg_config_checked_GTK2 CACHE) - pkg_check_modules(GTK2 REQUIRED gtk+-2.0) -+ set(GTK2_THEME_PREFIX "${CMAKE_INSTALL_PREFIX}") - if(GTK2_THEME_PREFIX) - set(GTK2_PREFIX "${GTK2_THEME_PREFIX}") - elseif(NOT GTK2_PREFIX) -diff --git a/gtk2/style/CMakeLists.txt b/gtk2/style/CMakeLists.txt -index 01e8891..a2c767e 100644 ---- a/gtk2/style/CMakeLists.txt -+++ b/gtk2/style/CMakeLists.txt -@@ -88,6 +88,6 @@ target_link_libraries(qtcurve-gtk2 - qtcurve-utils qtcurve-cairo m) - - install(TARGETS qtcurve-gtk2 LIBRARY DESTINATION -- ${GTK2_LIBDIR}/gtk-2.0/${GTK2_BIN_VERSION}/engines) -+ lib/gtk-2.0/${GTK2_BIN_VERSION}/engines) - install(FILES gtkrc icons3 icons4 map_kde_icons.pl kdeglobals - DESTINATION ${GTK2_THEME_DIR}/gtk-2.0) diff --git a/pkgs/misc/themes/qtcurve/qtcurve-1.8.18-toolbar-alpha.patch b/pkgs/misc/themes/qtcurve/qtcurve-1.8.18-toolbar-alpha.patch deleted file mode 100644 index 85400e6f0f67..000000000000 --- a/pkgs/misc/themes/qtcurve/qtcurve-1.8.18-toolbar-alpha.patch +++ /dev/null @@ -1,34 +0,0 @@ -diff --git a/qt4/style/qtcurve.cpp b/qt4/style/qtcurve.cpp -index d7659f5..aede882 100644 ---- a/qt4/style/qtcurve.cpp -+++ b/qt4/style/qtcurve.cpp -@@ -12436,7 +12436,12 @@ Style::drawMenuOrToolBarBackground(const QWidget *widget, QPainter *p, - if (!qtcIsCustomBgnd(&opts) || !qtcIsFlat(app) || - (menu && SHADE_NONE != opts.shadeMenubars)) { - p->save(); -+#if 0 -+ // Revert for now -+ // This is necessary for correct opacity on the menubar but may -+ // break transparent gradient. - p->setCompositionMode(QPainter::CompositionMode_Source); -+#endif - QRect rx(r); - QColor col(menu && (option->state & State_Enabled || - SHADE_NONE != opts.shadeMenubars) ? -diff --git a/qt5/style/qtcurve.cpp b/qt5/style/qtcurve.cpp -index c43b8a3..135eddc 100644 ---- a/qt5/style/qtcurve.cpp -+++ b/qt5/style/qtcurve.cpp -@@ -3398,7 +3398,12 @@ Style::drawMenuOrToolBarBackground(const QWidget *widget, QPainter *p, - if (!qtcIsCustomBgnd(&opts) || !qtcIsFlat(app) || - (menu && opts.shadeMenubars != SHADE_NONE)) { - p->save(); -+#if 0 -+ // Revert for now -+ // This is necessary for correct opacity on the menubar but may -+ // break transparent gradient. - p->setCompositionMode(QPainter::CompositionMode_Source); -+#endif - QRect rx(r); - QColor col(menu && (option->state & State_Enabled || - opts.shadeMenubars != SHADE_NONE) ? diff --git a/pkgs/misc/themes/zuki/default.nix b/pkgs/misc/themes/zuki/default.nix index 6da6d24902ed..491885a14b3f 100644 --- a/pkgs/misc/themes/zuki/default.nix +++ b/pkgs/misc/themes/zuki/default.nix @@ -4,20 +4,20 @@ stdenv.mkDerivation rec { name = "zuki-themes-${version}"; version = "${gnome3.version}.${date}"; date = { - "3.20" = "2016-07-01"; - "3.22" = "2016-10-20"; + "3.20" = "2017-02-09"; + "3.22" = "2017-02-17"; }."${gnome3.version}"; src = fetchFromGitHub { owner = "lassekongo83"; repo = "zuki-themes"; rev = { - "3.20" = "dda1726ac7b556df2ef9696e530f8c2eaa0aed37"; - "3.22" = "a48f0f12f81c49b480f82369ae45cfa49d78b143"; + "3.20" = "b9106c3c05012b7e91394819ca550def3357d2eb"; + "3.22" = "fc3cf7c372bcc439870c4785f91b8ea7af73e1cc"; }."${gnome3.version}"; sha256 = { - "3.20" = "0p7db8a2ni494vwp3b7av7d214fnynf6gr976qma6h9x4ck3phiz"; - "3.22" = "05sa5ighq01krbgfd4lddxvbhfqk5x5kgw6jnxwvx9rmmff713s1"; + "3.20" = "03k18p25gsscv05934vs0py26vpcrx93wi5bj6di277c6kwgjzxg"; + "3.22" = "02ppk8wsx0k7j3zgmcb1l8jgij0m5rdkrahfv884jxkyjr6wwgs5"; }."${gnome3.version}"; }; diff --git a/pkgs/misc/vim-plugins/default.nix b/pkgs/misc/vim-plugins/default.nix index 0f1c8e9a2010..c8872a40e561 100644 --- a/pkgs/misc/vim-plugins/default.nix +++ b/pkgs/misc/vim-plugins/default.nix @@ -399,6 +399,17 @@ rec { }; + vim-indent-object = buildVimPluginFrom2Nix { # created by nix#NixDerivation + name = "vim-indent-object-2015-08-11"; + src = fetchgit { + url = "git://github.com/michaeljsmith/vim-indent-object"; + rev = "1d3e4aac0117d57c3e1aaaa7e5a99f1d7553e01b"; + sha256 = "1xxl5pwbz56qjfxw6l686m1qc4a3q0r7afa9r5gjhgd1jy67z7d7"; + }; + dependencies = []; + + }; + vim-nix = buildVimPluginFrom2Nix { # created by nix#NixDerivation name = "vim-nix-2016-11-02"; src = fetchgit { @@ -622,6 +633,17 @@ rec { }; + argtextobj = buildVimPluginFrom2Nix { # created by nix#NixDerivation + name = "argtextobj-vim-2010-10-17"; + src = fetchgit { + url = "git://github.com/vim-scripts/argtextobj.vim"; + rev = "f3fbe427f7b4ec436416a5816d714dc917dc530b"; + sha256 = "1l4jh5hdmky1qj5z26jpnk49a6djjcvzyyr6pknrrgb8rzkiln48"; + }; + dependencies = []; + + }; + vim-elixir = buildVimPluginFrom2Nix { # created by nix#NixDerivation name = "vim-elixir-2017-01-24"; src = fetchgit { diff --git a/pkgs/misc/vim-plugins/vim-plugin-names b/pkgs/misc/vim-plugins/vim-plugin-names index b8fb32db0948..b12983b4bc09 100644 --- a/pkgs/misc/vim-plugins/vim-plugin-names +++ b/pkgs/misc/vim-plugins/vim-plugin-names @@ -80,6 +80,7 @@ "github:lyokha/vim-xkbswitch" "github:machakann/vim-highlightedyank" "github:mhinz/vim-startify" +"github:michaeljsmith/vim-indent-object" "github:mkasa/lushtags" "github:mpickering/hlint-refactor-vim" "github:nathanaelkane/vim-indent-guides" @@ -121,6 +122,7 @@ "github:vim-scripts/Colour-Sampler-Pack" "github:vim-scripts/Rename" "github:vim-scripts/a.vim" +"github:vim-scripts/argtextobj.vim" "github:vim-scripts/align" "github:vim-scripts/changeColorScheme.vim" "github:vim-scripts/random.vim" diff --git a/pkgs/os-specific/linux/bluez/bluez5.nix b/pkgs/os-specific/linux/bluez/bluez5.nix index b54298124415..6185e22fb875 100644 --- a/pkgs/os-specific/linux/bluez/bluez5.nix +++ b/pkgs/os-specific/linux/bluez/bluez5.nix @@ -20,7 +20,7 @@ stdenv.mkDerivation rec { readline libsndfile udev libical # Disables GStreamer; not clear what it gains us other than a # zillion extra dependencies. - # gstreamer gst_plugins_base + # gstreamer gst-plugins-base ]; outputs = [ "out" "dev" "test" ]; diff --git a/pkgs/os-specific/linux/bluez/bluez5_28.nix b/pkgs/os-specific/linux/bluez/bluez5_28.nix index 8cd5e064e1ea..11aee0d88f2c 100644 --- a/pkgs/os-specific/linux/bluez/bluez5_28.nix +++ b/pkgs/os-specific/linux/bluez/bluez5_28.nix @@ -22,7 +22,7 @@ in stdenv.mkDerivation rec { readline libsndfile udev libical # Disables GStreamer; not clear what it gains us other than a # zillion extra dependencies. - # gstreamer gst_plugins_base + # gstreamer gst-plugins-base ]; preConfigure = '' diff --git a/pkgs/os-specific/linux/bluez/default.nix b/pkgs/os-specific/linux/bluez/default.nix index d0a875516fa3..20b8d01db2d3 100644 --- a/pkgs/os-specific/linux/bluez/default.nix +++ b/pkgs/os-specific/linux/bluez/default.nix @@ -20,7 +20,7 @@ in stdenv.mkDerivation rec { readline libsndfile # Disables GStreamer; not clear what it gains us other than a # zillion extra dependencies. - # gstreamer gst_plugins_base + # gstreamer gst-plugins-base ]; configureFlags = [ diff --git a/pkgs/os-specific/linux/firmware/fwupd/default.nix b/pkgs/os-specific/linux/firmware/fwupd/default.nix new file mode 100644 index 000000000000..4c88e9c68079 --- /dev/null +++ b/pkgs/os-specific/linux/firmware/fwupd/default.nix @@ -0,0 +1,36 @@ +{ stdenv, fetchurl, gtk_doc, pkgconfig, gobjectIntrospection, intltool +, libgudev, polkit, gcab, appstream-glib, gusb, sqlite, libarchive +, libsoup, docbook2x, gpgme, libxslt, libelf, libsmbios, efivar +, fwupdate, libgpgerror, libyaml, valgrind +}: +let version = "0.8.1"; in + stdenv.mkDerivation + { name = "fwupd-${version}"; + src = fetchurl + { url = "https://people.freedesktop.org/~hughsient/releases/fwupd-${version}.tar.xz"; + sha256 = "0sq0aay5d6b0vgr7j7y4i58flbxmcbpwyw6vfwrd29fim21j6ac8"; + }; + buildInputs = + [ gtk_doc pkgconfig gobjectIntrospection intltool libgudev + polkit gcab appstream-glib gusb sqlite libarchive libsoup + docbook2x libxslt libelf libsmbios fwupdate libyaml valgrind + ]; + patchPhase = '' + sed -i -e \ + 's|/usr/bin/gpgme-config|${gpgme.dev}/bin/gpgme-config|' -e \ + 's|/usr/bin/gpg-error-config|${libgpgerror.dev}/bin/gpg-error-config|' \ + ./configure + ''; + preConfigure = '' + export NIX_CFLAGS_COMPILE="$NIX_CFLAGS_COMPILE -I${efivar}/include/efivar" + ''; + configureFlags = + [ "--with-systemdunitdir=$(out)/lib/systemd/system" + "--with-udevrulesdir=$(out)/lib/udev/rules.d" + ]; + enableParallelBuilding = true; + meta = + { license = [ stdenv.lib.licenses.gpl2 ]; + platforms = stdenv.lib.platforms.linux; + }; + } diff --git a/pkgs/os-specific/linux/firmware/fwupdate/default.nix b/pkgs/os-specific/linux/firmware/fwupdate/default.nix new file mode 100644 index 000000000000..3fc7af916368 --- /dev/null +++ b/pkgs/os-specific/linux/firmware/fwupdate/default.nix @@ -0,0 +1,35 @@ +{ stdenv, fetchurl, gnu-efi, efivar, libsmbios, popt, pkgconfig +, gettext }: +let version = "8"; in + stdenv.mkDerivation + { name = "fwupdate-${version}"; + src = fetchurl + { url = "https://github.com/rhinstaller/fwupdate/releases/download/${version}/fwupdate-${version}.tar.bz2"; + sha256 = "10q8k1kghvbcb5fwcl2smzp8vqdfzimx9dkk0c3hz39py1phy4n8"; + }; + makeFlags = + [ "EFIDIR=nixos" + "LIBDIR=$(out)/lib" + "GNUEFIDIR=${gnu-efi}/lib" + "TARGETDIR=$(out)/boot/efi/nixos/" + "prefix=$(out)/" + ]; + buildInputs = [ gnu-efi libsmbios popt pkgconfig gettext ]; + propagatedBuildInputs = [ efivar ]; + # TODO: Just apply the disable to the efi subdir + hardeningDisable = "all"; + patchPhase = '' + sed -i 's|/usr/include/smbios_c/token.h|smbios_c/token.h|' \ + linux/libfwup.c + sed -i 's|/usr/share|$(prefix)share|' linux/Makefile + sed -i "s|/usr/include|$out/include|" linux/fwup.pc.in + ''; + configurePhase = '' + arch=$(cc -dumpmachine | cut -f1 -d- | sed 's,i[3456789]86,ia32,' ) + export NIX_CFLAGS_COMPILE="$NIX_CFLAGS_COMPILE -I${gnu-efi}/include/efi -I${efivar}/include/efivar -I${gnu-efi}/include/efi/$arch" + ''; + meta = + { license = [ stdenv.lib.licenses.gpl2 ]; + platforms = stdenv.lib.platforms.linux; + }; + } diff --git a/pkgs/os-specific/linux/hostapd/default.nix b/pkgs/os-specific/linux/hostapd/default.nix index 0fef297ea5f6..6822d7cba5a7 100644 --- a/pkgs/os-specific/linux/hostapd/default.nix +++ b/pkgs/os-specific/linux/hostapd/default.nix @@ -10,6 +10,21 @@ stdenv.mkDerivation rec { sha256 = "0z8ilypad82q3l6q6kbv6hczvhjn8k63j8051x5yqfyjq686nlh1"; }; + patches = [ + (fetchurl { + url = "http://w1.fi/cgit/hostap/patch/?id=0d42179e1246f996d334c8bd18deca469fdb1add"; + sha256 = "0w5n3ypwavq5zlyfxpcyvbaf96g59xkwbw9xwpjyzb7h5j264615"; + }) + (fetchurl { + url = "http://w1.fi/cgit/hostap/patch/?id=df426738fb212d62b132d9bb447f0128194e00ab"; + sha256 = "0ps2prjijlcgv1i97xb5ypw840dhkc7ja1aw8zhlbrap7pbgi1mm"; + }) + (fetchurl { + url = "http://w1.fi/cgit/hostap/patch/?id=b70d508c50e8e2d2b8fb96ae44ae10f84cf0c1ae"; + sha256 = "0pslmsbay2cy1k07w1mdcr0b8w059jkrqrr9zi1aljvkm3vbwhj1"; + }) + ]; + nativeBuildInputs = [ pkgconfig ]; buildInputs = [ libnl openssl sqlite ]; diff --git a/pkgs/os-specific/linux/jool/source.nix b/pkgs/os-specific/linux/jool/source.nix index 0f2038fb2e39..ee47ee118551 100644 --- a/pkgs/os-specific/linux/jool/source.nix +++ b/pkgs/os-specific/linux/jool/source.nix @@ -1,9 +1,9 @@ { fetchzip }: rec { - version = "3.5.0"; + version = "3.5.2"; src = fetchzip { url = "https://github.com/NICMx/releases/raw/master/Jool/Jool-${version}.zip"; - sha256 = "06jp6gpfryn66q0z4w3gwkvfr17bcrjvys597nj49pxfiz4vczb2"; + sha256 = "0gmjdi50c9wfapikniy2i1cfhz124pp7q02a0vbwxw7f21llcv8x"; }; } diff --git a/pkgs/os-specific/linux/kernel/linux-4.10.nix b/pkgs/os-specific/linux/kernel/linux-4.10.nix index ff6fac2ac6d3..01ee7211ba6f 100644 --- a/pkgs/os-specific/linux/kernel/linux-4.10.nix +++ b/pkgs/os-specific/linux/kernel/linux-4.10.nix @@ -1,13 +1,12 @@ { stdenv, fetchurl, perl, buildLinux, ... } @ args: import ./generic.nix (args // rec { - version = "4.10"; + version = "4.10.1"; extraMeta.branch = "4.10"; - modDirVersion = "4.10.0"; src = fetchurl { url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz"; - sha256 = "3c95d9f049bd085e5c346d2c77f063b8425f191460fcd3ae9fe7e94e0477dc4b"; + sha256 = "0hrmph137q4j2xfsv1fyayig47g4v8ivd2rqsw03dy7mzasnp83c"; }; kernelPatches = args.kernelPatches; diff --git a/pkgs/os-specific/linux/kernel/linux-4.4.nix b/pkgs/os-specific/linux/kernel/linux-4.4.nix index 0aac9b43f1e6..fba52eeaee5b 100644 --- a/pkgs/os-specific/linux/kernel/linux-4.4.nix +++ b/pkgs/os-specific/linux/kernel/linux-4.4.nix @@ -1,12 +1,12 @@ { stdenv, fetchurl, perl, buildLinux, ... } @ args: import ./generic.nix (args // rec { - version = "4.4.50"; + version = "4.4.52"; extraMeta.branch = "4.4"; src = fetchurl { url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz"; - sha256 = "1dqnhajciy9vgcx4lz5mngc21j5w73fzpivxx6kn7pqbpfjlr574"; + sha256 = "01hz3g7j1m8dis6pyy9p8pi5ixl32g6cvgav0i7a7qbkrspdvlp8"; }; kernelPatches = args.kernelPatches; diff --git a/pkgs/os-specific/linux/kernel/linux-4.9.nix b/pkgs/os-specific/linux/kernel/linux-4.9.nix index 09f0fd72eeeb..9290bb125f50 100644 --- a/pkgs/os-specific/linux/kernel/linux-4.9.nix +++ b/pkgs/os-specific/linux/kernel/linux-4.9.nix @@ -1,12 +1,12 @@ { stdenv, fetchurl, perl, buildLinux, ... } @ args: import ./generic.nix (args // rec { - version = "4.9.11"; + version = "4.9.13"; extraMeta.branch = "4.9"; src = fetchurl { url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz"; - sha256 = "1czj88bj27yaiikf88kz131ayivcqhkq9d5r863w1s3qj04c2bsi"; + sha256 = "0s52hrs3wrsa1chzgcqpxwgb5kjmpfd82i964n9d2bmk9zn4liin"; }; kernelPatches = args.kernelPatches; diff --git a/pkgs/os-specific/linux/kernel/linux-grsecurity.nix b/pkgs/os-specific/linux/kernel/linux-grsecurity.nix index c185442c772a..859385c4e994 100644 --- a/pkgs/os-specific/linux/kernel/linux-grsecurity.nix +++ b/pkgs/os-specific/linux/kernel/linux-grsecurity.nix @@ -1,12 +1,12 @@ { stdenv, fetchurl, perl, buildLinux, ... } @ args: import ./generic.nix (args // rec { - version = "4.9.11"; + version = "4.9.13"; extraMeta.branch = "4.9"; src = fetchurl { url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz"; - sha512 = "3lh2nrkq3254diqdjry857gmh39ijxxhd7h8563jdzv9i8awv564zajpdcr6bjpf5swyicjsylifym2b5ww41b0fp6z4pkns9mmppny"; + sha512 = "2mszr7n212ryaw5q2lj92766aqnjznkfr7ly04g2ggzk7cyiirrf1w37d9arzg3smn5695fb1frikacnbrmz2hsaia48kjhwgjbxn2h"; }; kernelPatches = args.kernelPatches; diff --git a/pkgs/os-specific/linux/kernel/patches.nix b/pkgs/os-specific/linux/kernel/patches.nix index 824d685378c5..1f5c07f9b094 100644 --- a/pkgs/os-specific/linux/kernel/patches.nix +++ b/pkgs/os-specific/linux/kernel/patches.nix @@ -95,9 +95,9 @@ rec { }; grsecurity_testing = grsecPatch - { kver = "4.9.11"; - grrev = "201702181444"; - sha512 = "22yfq0w2hdhn0mhw0m2knm368f69z0qsf7vsfid7sw4m9ylmxfwzlnl92vfz15vldfl10hk78y59dcf8nv6jljh8gb5ycv4q61qlph6"; + { kver = "4.9.13"; + grrev = "201702270729"; + sha512 = "07sbgvksjrvawisq4knjq34022blgg8f14blv22d37siplyamydarsykai5dks5573k61dv9q027jigxyamy50h0fd5ic8qpdp0y30c"; }; # This patch relaxes grsec constraints on the location of usermode helpers, @@ -174,4 +174,13 @@ rec { sha256 = "0mps33r4mnwiy0bmgrzgqkrk59yya17v6kzpv9024g4xlz61rk8p"; }; }; + + DCCP_double_free_vulnerability_CVE-2017-6074 = rec + { name = "DCCP_double_free_vulnerability_CVE-2017-6074.patch"; + patch = fetchpatch { + inherit name; + url = "https://git.kernel.org/cgit/linux/kernel/git/torvalds/linux.git/patch/?id=5edabca9d4cff7f1f2b68f0bac55ef99d9798ba4"; + sha256 = "10dmv3d3gj8rvj9h40js4jh8xbr5wyaqiy0kd819mya441mj8ll2"; + }; + }; } diff --git a/pkgs/os-specific/linux/libsmbios/default.nix b/pkgs/os-specific/linux/libsmbios/default.nix index a3d212dda53b..e2b675fb4ffa 100644 --- a/pkgs/os-specific/linux/libsmbios/default.nix +++ b/pkgs/os-specific/linux/libsmbios/default.nix @@ -1,24 +1,24 @@ -{ stdenv, fetchurl, pkgconfig, libxml2, perl }: +{ stdenv, fetchurl, pkgconfig, libxml2, perl, autoreconfHook, doxygen }: let - name = "libsmbios-2.2.28"; + version = "2.3.2"; in stdenv.mkDerivation { - inherit name; + name = "libsmbios-${version}"; src = fetchurl { - url = "http://linux.dell.com/libsmbios/download/libsmbios/${name}/${name}.tar.gz"; - sha256 = "03m0n834w49acwbf5cf9ync1ksnn2jkwaysvy7584y60qpmngb91"; + url = "https://github.com/dell/libsmbios/archive/v${version}.tar.gz"; + sha256 = "0kvi36jrvhspyyq0pjfdyvzvimdn27fvbdpf429qm3xdmfi78y2j"; }; - buildInputs = [ pkgconfig libxml2 perl ]; + buildInputs = [ pkgconfig libxml2 perl autoreconfHook doxygen ]; # It tries to install some Python stuff even when Python is disabled. installFlags = "pkgpythondir=$(TMPDIR)/python"; - # It forgets to install headers. postInstall = '' + mkdir -p $out/include cp -va "src/include/"* "$out/include/" cp -va "out/public-include/"* "$out/include/" ''; diff --git a/pkgs/os-specific/linux/lttng-modules/default.nix b/pkgs/os-specific/linux/lttng-modules/default.nix index 7e29aa0f67de..3bb61227fe41 100644 --- a/pkgs/os-specific/linux/lttng-modules/default.nix +++ b/pkgs/os-specific/linux/lttng-modules/default.nix @@ -3,25 +3,25 @@ stdenv.mkDerivation rec { pname = "lttng-modules-${version}"; name = "${pname}-${kernel.version}"; - version = "2.8.3"; + version = "2.9.1"; src = fetchurl { url = "http://lttng.org/files/lttng-modules/lttng-modules-${version}.tar.bz2"; - sha256 = "018lqxbksj9hpjfp2a3yc6lkjkj4rgf2x147l1jjh7mfgqvcb53b"; + sha256 = "0m0d8sp7fj1qha7qz1204yzpsyfd8a8fawjbvdlmk9jc4piqy1v2"; }; hardeningDisable = [ "pic" ]; - NIX_CFLAGS_COMPILE = "-Wno-error=implicit-function-declaration"; + NIX_CFLAGS_COMPILE = [ "-Wno-error=implicit-function-declaration" ]; preConfigure = '' export KERNELDIR="${kernel.dev}/lib/modules/${kernel.modDirVersion}/build" export INSTALL_MOD_PATH="$out" ''; - installPhase = '' - make modules_install - ''; + installTargets = [ "modules_install" ]; + + enableParallelBuilding = true; meta = with stdenv.lib; { description = "Linux kernel modules for LTTng tracing"; diff --git a/pkgs/os-specific/linux/lxc/default.nix b/pkgs/os-specific/linux/lxc/default.nix index ccee2a18a907..bf3a05f11161 100644 --- a/pkgs/os-specific/linux/lxc/default.nix +++ b/pkgs/os-specific/linux/lxc/default.nix @@ -33,6 +33,14 @@ stdenv.mkDerivation rec { XML_CATALOG_FILES = "${docbook_xml_dtd_45}/xml/dtd/docbook/catalog.xml"; + # FIXME + # glibc 2.25 moved major()/minor() to <sys/sysmacros.h>. + # this commit should detect this: https://github.com/lxc/lxc/pull/1388/commits/af6824fce9c9536fbcabef8d5547f6c486f55fdf + # However autotools checks if mkdev is still defined in <sys/types.h> runs before + # checking if major()/minor() is defined there. The mkdev check succeeds with + # a warning and the check which should set MAJOR_IN_SYSMACROS is skipped. + NIX_CFLAGS_COMPILE = [ "-DMAJOR_IN_SYSMACROS" ]; + configureFlags = [ "--localstatedir=/var" "--sysconfdir=/etc" diff --git a/pkgs/os-specific/linux/mcelog/default.nix b/pkgs/os-specific/linux/mcelog/default.nix index dee201c17783..64b937390f16 100644 --- a/pkgs/os-specific/linux/mcelog/default.nix +++ b/pkgs/os-specific/linux/mcelog/default.nix @@ -2,10 +2,10 @@ stdenv.mkDerivation rec { name = "mcelog-${version}"; - version = "144"; + version = "148"; src = fetchFromGitHub { - sha256 = "05b1x9z6x9yz3xmb93qvwwssjbvp28bawy8as9bfm29pyhzdxx6k"; + sha256 = "04mzscvr38r2q9da9wmv3cxb99vrkxks1mzgvwsxk753xan3p42c"; rev = "v${version}"; repo = "mcelog"; owner = "andikleen"; diff --git a/pkgs/os-specific/linux/microcode/intel.nix b/pkgs/os-specific/linux/microcode/intel.nix index 6fa947fea17a..ee9d25dfe206 100644 --- a/pkgs/os-specific/linux/microcode/intel.nix +++ b/pkgs/os-specific/linux/microcode/intel.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "microcode-intel-${version}"; - version = "20160714"; + version = "20161104"; src = fetchurl { - url = "http://downloadmirror.intel.com/26156/eng/microcode-${version}.tgz"; - sha256 = "03l4pkymrgbd5y9m5ys7kq85zvckmjbw7xr6pkzg2nr7jgycdagk"; + url = "http://downloadmirror.intel.com/26400/eng/microcode-${version}.tgz"; + sha256 = "1lg3bvznvwcxf66k038c57brkcxfva8crpnzj5idmczr5yk4q5bh"; }; buildInputs = [ libarchive ]; diff --git a/pkgs/os-specific/linux/wireguard/default.nix b/pkgs/os-specific/linux/wireguard/default.nix index 7b87c23789b0..59b9475160ef 100644 --- a/pkgs/os-specific/linux/wireguard/default.nix +++ b/pkgs/os-specific/linux/wireguard/default.nix @@ -6,11 +6,11 @@ assert kernel != null -> stdenv.lib.versionAtLeast kernel.version "3.18"; let name = "wireguard-${version}"; - version = "0.0.20170214"; + version = "0.0.20170223"; src = fetchurl { url = "https://git.zx2c4.com/WireGuard/snapshot/WireGuard-${version}.tar.xz"; - sha256 = "1e4ee213d2a5ac672c952c59e9c64d6d7d5dc3e21c003aee30d75208237e8bf5"; + sha256 = "6d2c8cd29c4f9fb404546a4749ec050739a26b4a49b5864f1dec531377c3c50d"; }; meta = with stdenv.lib; { diff --git a/pkgs/os-specific/linux/xf86-input-multitouch/default.nix b/pkgs/os-specific/linux/xf86-input-multitouch/default.nix index 80ff99228457..e1bafa93ea6f 100644 --- a/pkgs/os-specific/linux/xf86-input-multitouch/default.nix +++ b/pkgs/os-specific/linux/xf86-input-multitouch/default.nix @@ -7,6 +7,7 @@ , xextproto , inputproto , randrproto +, xorg , libpciaccess }: @@ -30,7 +31,11 @@ stdenv.mkDerivation { EndSection ''; - buildInputs = [ mtdev xproto xextproto inputproto libpciaccess randrproto ]; + buildInputs = with xorg; [ + mtdev xproto xextproto inputproto libpciaccess randrproto renderproto + xineramaproto resourceproto scrnsaverproto kbproto libxcb videoproto + dri3proto presentproto + ]; buildPhase = '' make INCLUDE="$NIX_CFLAGS_COMPILE -I${xorgserver.dev}/include/xorg -I${pixman}/include/pixman-1 -Iinclude" diff --git a/pkgs/servers/dns/knot-resolver/default.nix b/pkgs/servers/dns/knot-resolver/default.nix index 323b0b500008..24960eb65eff 100644 --- a/pkgs/servers/dns/knot-resolver/default.nix +++ b/pkgs/servers/dns/knot-resolver/default.nix @@ -10,11 +10,11 @@ let in stdenv.mkDerivation rec { name = "knot-resolver-${version}"; - version = "1.2.2"; + version = "1.2.3"; src = fetchurl { url = "http://secure.nic.cz/files/knot-resolver/${name}.tar.xz"; - sha256 = "89ab2ac8058b297c1f73f1c12e0f16d6e160aa86363e99ffa590bee7fe307931"; + sha256 = "81a773f182112b4e11935223f900cfbcca8624f2c382b1e39a68d7c3db81c921"; }; outputs = [ "out" "dev" ]; diff --git a/pkgs/servers/emby/default.nix b/pkgs/servers/emby/default.nix index 9fc0a303ad0e..340e376e9ed6 100644 --- a/pkgs/servers/emby/default.nix +++ b/pkgs/servers/emby/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "emby-${version}"; - version = "3.1.5"; + version = "3.2.4"; src = fetchurl { url = "https://github.com/MediaBrowser/Emby/releases/download/${version}/Emby.Mono.zip"; - sha256 = "0s0m456rxdrj58zbaby6mdgc1ndc3zx2c07n94hn3hdlgralgwaa"; + sha256 = "0a14wr2yal9q5vlwadyki9w35bn4f3r7r5w3zynp4f7460lfapmf"; }; buildInputs = with pkgs; [ diff --git a/pkgs/servers/firebird/default.nix b/pkgs/servers/firebird/default.nix index 18d8bf5cd195..da54936092b3 100644 --- a/pkgs/servers/firebird/default.nix +++ b/pkgs/servers/firebird/default.nix @@ -38,7 +38,7 @@ */ stdenv.mkDerivation rec { - version = "2.5.6.27020-0"; + version = "2.5.7.27050-0"; name = "firebird-${version}"; # enableParallelBuilding = false; build fails @@ -62,7 +62,7 @@ stdenv.mkDerivation rec { src = fetchurl { url = "mirror://sourceforge/firebird/Firebird-${version}.tar.bz2"; - sha256 = "0887a813wffp44hnc2gmwbc4ylpqw3fh3hz3bf6q3648344a9fdv"; + sha256 = "06hp6bq5irqvm3h03s79qjgcc3jsjpq150y9aq7anklx9v4nhfqa"; }; hardeningDisable = [ "format" ]; diff --git a/pkgs/servers/http/hiawatha/default.nix b/pkgs/servers/http/hiawatha/default.nix new file mode 100644 index 000000000000..26566b2281cc --- /dev/null +++ b/pkgs/servers/http/hiawatha/default.nix @@ -0,0 +1,51 @@ +{ stdenv, fetchurl, cmake, + libxslt, zlib, libxml2, openssl, + enableSSL ? true, + enableMonitor ? false, + enableRproxy ? true, + enableTomahawk ? false, + enableXSLT ? true, + enableToolkit ? true +}: + +assert enableSSL -> openssl !=null; + +stdenv.mkDerivation rec { + name = "hiawatha-${version}"; + version = "10.5"; + + src = fetchurl { + url = "https://github.com/hsleisink/hiawatha/archive/v${version}.tar.gz"; + sha256 = "11nqdmmhq1glgsiza8pfh69wmpgwl51vb3xijmpcxv63a7ywp4fj"; + }; + + buildInputs = [ cmake libxslt zlib libxml2 ] ++ stdenv.lib.optional enableSSL openssl ; + + cmakeFlags = [ + ( if enableSSL then "-DENABLE_TLS=on" else "-DENABLE_TLS=off" ) + ( if enableMonitor then "-DENABLE_MONITOR=on" else "-DENABLE_MONITOR=off" ) + ( if enableRproxy then "-DENABLE_RPROXY=on" else "-DENABLE_RPROXY=off" ) + ( if enableTomahawk then "-DENABLE_TOMAHAWK=on" else "-DENABLE_TOMAHAWK=off" ) + ( if enableXSLT then "-DENABLE_XSLT=on" else "-DENABLE_XSLT=off" ) + ( if enableToolkit then "-DENABLE_TOOLKIT=on" else "-DENABLE_TOOLKIT=off" ) + "-DWEBROOT_DIR=/var/www/hiawatha" + "-DPID_DIR=/run" + "-DWORK_DIR=/var/lib/hiawatha" + "-DLOG_DIR=/var/log/hiawatha" + ]; + + # workaround because cmake tries installs stuff outside of nix store + makeFlags = [ "DESTDIR=$(out)" "PREFIX=" ]; + postInstall = '' + mv $out/$out/* $out + rm -rf $out/{var,run} + ''; + + meta = with stdenv.lib; { + description = "An advanced and secure webserver"; + license = licenses.gpl2; + homepage = "https://www.hiawatha-webserver.org"; + maintainer = [ maintainers.ndowens ]; + }; + +} diff --git a/pkgs/servers/monitoring/munin/default.nix b/pkgs/servers/monitoring/munin/default.nix index 3e4e778e238b..5d7d2e787735 100644 --- a/pkgs/servers/monitoring/munin/default.nix +++ b/pkgs/servers/monitoring/munin/default.nix @@ -1,5 +1,5 @@ { stdenv, fetchFromGitHub, makeWrapper, which, coreutils, rrdtool, perl, perlPackages -, python, ruby, jre, nettools +, python, ruby, jre, nettools, bc }: stdenv.mkDerivation rec { @@ -99,7 +99,8 @@ stdenv.mkDerivation rec { postFixup = '' echo "Removing references to /usr/{bin,sbin}/ from munin plugins..." - find "$out/lib/plugins" -type f -print0 | xargs -0 -L1 sed -i -e "s|/usr/bin/||g" -e "s|/usr/sbin/||g" + find "$out/lib/plugins" -type f -print0 | xargs -0 -L1 \ + sed -i -e "s|/usr/bin/||g" -e "s|/usr/sbin/||g" -e "s|\<bc\>|${bc}/bin/bc|g" if test -e $out/nix-support/propagated-native-build-inputs; then ln -s $out/nix-support/propagated-native-build-inputs $out/nix-support/propagated-user-env-packages diff --git a/pkgs/servers/monitoring/sensu/Gemfile.lock b/pkgs/servers/monitoring/sensu/Gemfile.lock index 9f58be03b621..ee425b6edf97 100644 --- a/pkgs/servers/monitoring/sensu/Gemfile.lock +++ b/pkgs/servers/monitoring/sensu/Gemfile.lock @@ -1,75 +1,79 @@ GEM remote: https://rubygems.org/ specs: - amq-protocol (1.9.2) - amqp (1.5.0) - amq-protocol (>= 1.9.2) + amq-protocol (2.0.1) + amqp (1.6.0) + amq-protocol (>= 2.0.1) eventmachine - async_sinatra (1.0.0) - rack (>= 1.4.1) - sinatra (>= 1.3.2) - childprocess (0.5.3) + childprocess (0.5.8) ffi (~> 1.0, >= 1.0.11) - daemons (1.2.2) - em-redis-unified (0.6.0) - eventmachine (>= 0.12.10) + em-http-server (0.1.8) + eventmachine em-worker (0.0.2) eventmachine - eventmachine (1.0.3) - ffi (1.9.8) - multi_json (1.11.0) - rack (1.6.0) - rack-protection (1.5.3) - rack - sensu (0.17.1) - async_sinatra (= 1.0.0) - em-redis-unified (= 0.6.0) - eventmachine (= 1.0.3) - multi_json (= 1.11.0) - sensu-em (= 2.4.1) - sensu-extension (= 1.1.2) - sensu-extensions (= 1.2.0) - sensu-logger (= 1.0.0) - sensu-settings (= 1.3.0) - sensu-spawn (= 1.1.0) - sensu-transport (= 2.4.0) - sinatra (= 1.3.5) - thin (= 1.5.0) - uuidtools (= 2.1.4) - sensu-em (2.4.1) - sensu-extension (1.1.2) - sensu-em - sensu-extensions (1.2.0) - multi_json - sensu-em + eventmachine (1.2.2) + ffi (1.9.17) + oj (2.14.6) + parse-cron (0.1.4) + sensu (0.28.0) + em-http-server (= 0.1.8) + eventmachine (= 1.2.2) + parse-cron (= 0.1.4) + sensu-extension (= 1.5.1) + sensu-extensions (= 1.7.1) + sensu-json (= 2.0.1) + sensu-logger (= 1.2.1) + sensu-redis (= 2.1.0) + sensu-settings (= 9.9.0) + sensu-spawn (= 2.2.1) + sensu-transport (= 7.0.2) + sensu-extension (1.5.1) + eventmachine + sensu-extensions (1.7.1) sensu-extension + sensu-extensions-debug (= 1.0.0) + sensu-extensions-json (= 1.0.0) + sensu-extensions-occurrences (= 1.1.0) + sensu-extensions-only-check-output (= 1.0.0) + sensu-extensions-ruby-hash (= 1.0.0) + sensu-json (>= 1.1.0) sensu-logger sensu-settings - sensu-logger (1.0.0) - multi_json - sensu-em - sensu-settings (1.3.0) - multi_json - sensu-spawn (1.1.0) - childprocess (= 0.5.3) + sensu-extensions-debug (1.0.0) + sensu-extension + sensu-extensions-json (1.0.0) + sensu-extension + sensu-extensions-occurrences (1.1.0) + sensu-extension + sensu-extensions-only-check-output (1.0.0) + sensu-extension + sensu-extensions-ruby-hash (1.0.0) + sensu-extension + sensu-json (2.0.1) + oj (= 2.14.6) + sensu-logger (1.2.1) + eventmachine + sensu-json + sensu-redis (2.1.0) + eventmachine + sensu-settings (9.9.0) + parse-cron + sensu-json (>= 1.1.0) + sensu-spawn (2.2.1) + childprocess (= 0.5.8) em-worker (= 0.0.2) - sensu-em - sensu-transport (2.4.0) - amqp (= 1.5.0) - sensu-em - sinatra (1.3.5) - rack (~> 1.4) - rack-protection (~> 1.3) - tilt (~> 1.3, >= 1.3.3) - thin (1.5.0) - daemons (>= 1.0.9) - eventmachine (>= 0.12.6) - rack (>= 1.0.0) - tilt (1.4.1) - uuidtools (2.1.4) + eventmachine + sensu-transport (7.0.2) + amq-protocol (= 2.0.1) + amqp (= 1.6.0) + eventmachine + sensu-redis (>= 1.0.0) PLATFORMS ruby DEPENDENCIES sensu + +BUNDLED WITH + 1.14.4 diff --git a/pkgs/servers/monitoring/sensu/default.nix b/pkgs/servers/monitoring/sensu/default.nix index ecc1d4109843..c0a2c3ca49e5 100644 --- a/pkgs/servers/monitoring/sensu/default.nix +++ b/pkgs/servers/monitoring/sensu/default.nix @@ -1,16 +1,17 @@ - { lib, bundlerEnv, ruby }: +{ lib, bundlerEnv, ruby }: - bundlerEnv { - name = "sensu-0.17.1"; +bundlerEnv rec { + name = "sensu-${version}"; + version = (import ./gemset.nix).sensu.version; - inherit ruby; - gemdir = ./.; + inherit ruby; + gemdir = ./.; - meta = with lib; { - description = "A monitoring framework that aims to be simple, malleable, and scalable"; - homepage = http://sensuapp.org/; - license = licenses.mit; - maintainers = with maintainers; [ theuni ]; - platforms = platforms.unix; - }; - } + meta = with lib; { + description = "A monitoring framework that aims to be simple, malleable, and scalable"; + homepage = http://sensuapp.org/; + license = licenses.mit; + maintainers = with maintainers; [ theuni peterhoeg ]; + platforms = platforms.unix; + }; +} diff --git a/pkgs/servers/monitoring/sensu/gemset.nix b/pkgs/servers/monitoring/sensu/gemset.nix index 116bce9c4b53..273496e2fb42 100644 --- a/pkgs/servers/monitoring/sensu/gemset.nix +++ b/pkgs/servers/monitoring/sensu/gemset.nix @@ -1,242 +1,186 @@ { - "amq-protocol" = { - version = "1.9.2"; + amq-protocol = { source = { + remotes = ["https://rubygems.org"]; + sha256 = "1rpn9vgh7y037aqhhp04smihzr73vp5i5g6xlqlha10wy3q0wp7x"; type = "gem"; - sha256 = "1gl479j003vixfph5jmdskl20il8816y0flp4msrc8im3b5iiq3r"; }; + version = "2.0.1"; }; - "amqp" = { - version = "1.5.0"; + amqp = { source = { + remotes = ["https://rubygems.org"]; + sha256 = "0kbrqnpjgj9v0722p3n5rw589l4g26ry8mcghwc5yr20ggkpdaz9"; type = "gem"; - sha256 = "0jlcwyvjz0b28wxdabkyhdqyqp5ji56ckfywsy9mgp0m4wfbrh8c"; }; - dependencies = [ - "amq-protocol" - "eventmachine" - ]; + version = "1.6.0"; }; - "async_sinatra" = { - version = "1.0.0"; + childprocess = { source = { + remotes = ["https://rubygems.org"]; + sha256 = "1lv7axi1fhascm9njxh3lx1rbrnsm8wgvib0g7j26v4h1fcphqg0"; type = "gem"; - sha256 = "02yi9qfsi8kk4a4p1c4sx4pgism05m18kwlc9dd23zzdy9jdgq1a"; }; - dependencies = [ - "rack" - "sinatra" - ]; + version = "0.5.8"; }; - "childprocess" = { - version = "0.5.3"; + em-http-server = { source = { + remotes = ["https://rubygems.org"]; + sha256 = "0y8l4gymy9dzjjchjav90ck6has2i2zdjihlhcyrg3jgq6kjzyq5"; type = "gem"; - sha256 = "12djpdr487fddq55sav8gw1pjglcbb0ab0s6npga0ywgsqdyvsww"; }; - dependencies = [ - "ffi" - ]; + version = "0.1.8"; }; - "daemons" = { - version = "1.2.2"; + em-worker = { + dependencies = ["eventmachine"]; source = { + sha256 = "0z4jx9z2q5hxvdvik4yp0ahwfk69qsmdnyp72ln22p3qlkq2z5wk"; type = "gem"; - sha256 = "121c7vkimg3baxga69xvdkwxiq8wkmxqvdbyqi5i82vhih5d3cn3"; }; + version = "0.0.2"; }; - "em-redis-unified" = { - version = "0.6.0"; + eventmachine = { source = { + remotes = ["https://rubygems.org"]; + sha256 = "00mlcq33q104spkb5c997lwallpilhj0d6fzsbd4lr9s8lmjga5f"; type = "gem"; - sha256 = "1hf7dv6qmxfilpd7crcqlyqk6jp5z8md76bpg3n0163ps4ra73p0"; }; - dependencies = [ - "eventmachine" - ]; + version = "1.2.2"; }; - "em-worker" = { - version = "0.0.2"; + ffi = { source = { + remotes = ["https://rubygems.org"]; + sha256 = "07hnyr47mndsjfanzh348wm3fxjx9nx68mdb3cpsdvfqrxnz97s7"; type = "gem"; - sha256 = "0z4jx9z2q5hxvdvik4yp0ahwfk69qsmdnyp72ln22p3qlkq2z5wk"; }; - dependencies = [ - "eventmachine" - ]; + version = "1.9.17"; }; - "eventmachine" = { - version = "1.0.3"; + oj = { source = { + remotes = ["https://rubygems.org"]; + sha256 = "0pa9vmbxivplphad4ddjy30ylbb3bi61y13vmwx4llz3svl8r8kk"; type = "gem"; - sha256 = "09sqlsb6x9ddlgfw5gsw7z0yjg5m2qfjiqkz2fx70zsizj3lqhil"; }; + version = "2.14.6"; }; - "ffi" = { - version = "1.9.8"; + parse-cron = { source = { + remotes = ["https://rubygems.org"]; + sha256 = "02fj9i21brm88nb91ikxwxbwv9y7mb7jsz6yydh82rifwq7357hg"; type = "gem"; - sha256 = "0ph098bv92rn5wl6rn2hwb4ng24v4187sz8pa0bpi9jfh50im879"; }; + version = "0.1.4"; }; - "multi_json" = { - version = "1.11.0"; + sensu = { source = { + remotes = ["https://rubygems.org"]; + sha256 = "1dbyc1wylg9ligr1slv60myhbzdbja96v3srb3xrirv6vl33npqx"; type = "gem"; - sha256 = "1mg3hp17ch8bkf3ndj40s50yjs0vrqbfh3aq5r02jkpjkh23wgxl"; }; + version = "0.28.0"; }; - "rack" = { - version = "1.6.0"; + sensu-extension = { source = { + remotes = ["https://rubygems.org"]; + sha256 = "1lgmjxfbq11v4yi3qanf1qxv0sgm1a8a7wj7qyn1nkva6zmimss3"; type = "gem"; - sha256 = "1f57f8xmrgfgd76s6mq7vx6i266zm4330igw71an1g0kh3a42sbb"; }; + version = "1.5.1"; }; - "rack-protection" = { - version = "1.5.3"; + sensu-extensions = { source = { + remotes = ["https://rubygems.org"]; + sha256 = "0axjqak7yhhznhs9f4q8km7ikha5khglwqsc33scck13hsvw9l6g"; type = "gem"; - sha256 = "0cvb21zz7p9wy23wdav63z5qzfn4nialik22yqp6gihkgfqqrh5r"; }; - dependencies = [ - "rack" - ]; + version = "1.7.1"; }; - "sensu" = { - version = "0.17.1"; + sensu-extensions-debug = { source = { + remotes = ["https://rubygems.org"]; + sha256 = "11abdgn2kkkbvxq4692yg6a27qnxz4349gfiq7d35biy7vrw34lp"; type = "gem"; - sha256 = "1fqpypins1zhind0in0ax0y97a6pf3z85gwjz4bjm6cjrkarb5zj"; }; - dependencies = [ - "async_sinatra" - "em-redis-unified" - "eventmachine" - "multi_json" - "sensu-em" - "sensu-extension" - "sensu-extensions" - "sensu-logger" - "sensu-settings" - "sensu-spawn" - "sensu-transport" - "sinatra" - "thin" - "uuidtools" - ]; + version = "1.0.0"; }; - "sensu-em" = { - version = "2.4.1"; + sensu-extensions-json = { source = { + remotes = ["https://rubygems.org"]; + sha256 = "1wnbn9sycdqdh9m0fhszaqkv0jijs3fkdbvcv8kdspx6irbv3m6g"; type = "gem"; - sha256 = "08jz47lfnv55c9yl2dhyv1si6zl8h4xj8y1sjy2h2fqy48prfgmy"; }; + version = "1.0.0"; }; - "sensu-extension" = { - version = "1.1.2"; + sensu-extensions-occurrences = { source = { + remotes = ["https://rubygems.org"]; + sha256 = "0xi9888gp3lz5fik1k32bc1c6sjp7rr551p8dr5i3hsm5ii7blja"; type = "gem"; - sha256 = "19qz22fcb3xjz9p5npghlcvxkf8h1rsfws3j988ybnimmmmiqm24"; }; - dependencies = [ - "sensu-em" - ]; + version = "1.1.0"; }; - "sensu-extensions" = { - version = "1.2.0"; + sensu-extensions-only-check-output = { source = { + remotes = ["https://rubygems.org"]; + sha256 = "0ds2i8wd4ji9ifig2zzr4jpxinvk5dm7j10pvaqy4snykxa3rqh3"; type = "gem"; - sha256 = "1b8978g1ww7vdrsw7zvba6qvc56s4vfm1hw3szw3j1gsk6j0vb81"; }; - dependencies = [ - "multi_json" - "sensu-em" - "sensu-extension" - "sensu-logger" - "sensu-settings" - ]; - }; - "sensu-logger" = { version = "1.0.0"; - source = { - type = "gem"; - sha256 = "0vwa2b5wa9xqzb9lmhma49171iabwbnnnyhhhaii8n6j4axvar93"; - }; - dependencies = [ - "multi_json" - "sensu-em" - ]; }; - "sensu-settings" = { - version = "1.3.0"; + sensu-extensions-ruby-hash = { source = { + remotes = ["https://rubygems.org"]; + sha256 = "1xyrj3gbmslbivcd5qcmyclgapn7qf7f5jwfvfpw53bxzib0h7s3"; type = "gem"; - sha256 = "0s9fyqhq5vf9m9937n3wczlr4z62rn1ydc6m53vn4156fpim6yga"; }; - dependencies = [ - "multi_json" - ]; + version = "1.0.0"; }; - "sensu-spawn" = { - version = "1.1.0"; + sensu-json = { source = { + remotes = ["https://rubygems.org"]; + sha256 = "08bn8a5fscbhc9mcjg5avwjjbwxn28b48336bdxx87yng0wyafm4"; type = "gem"; - sha256 = "0w9z6hpr27lq02y6c2mnrdl9xpsjfg77kzsfsp2f2w4swdwmiv0v"; }; - dependencies = [ - "childprocess" - "em-worker" - "sensu-em" - ]; + version = "2.0.1"; }; - "sensu-transport" = { - version = "2.4.0"; + sensu-logger = { source = { + remotes = ["https://rubygems.org"]; + sha256 = "03kicjqz8a594bxnwyg6bcd4fipy2vxjl1gbaip4gpixxki32dx0"; type = "gem"; - sha256 = "0gh8rcl22daax7qng93kj2jydql1jhhskd37kj7sgz0rr8wy2x06"; }; - dependencies = [ - "amqp" - "sensu-em" - ]; + version = "1.2.1"; }; - "sinatra" = { - version = "1.3.5"; + sensu-redis = { source = { + remotes = ["https://rubygems.org"]; + sha256 = "10axrjg2q569bjdchpjsdillzszifkgkayaz390hnf876mssqwcg"; type = "gem"; - sha256 = "1mn6nzfyirfqr7prhsn4nr3k481c6nzsad2p9s1xnsbvxa1vkqwr"; }; - dependencies = [ - "rack" - "rack-protection" - "tilt" - ]; + version = "2.1.0"; }; - "thin" = { - version = "1.5.0"; + sensu-settings = { source = { + remotes = ["https://rubygems.org"]; + sha256 = "0bs66zmhs7yrwywvfhbld051d83f3nypmk2rf8dfn19ijzk4ch9i"; type = "gem"; - sha256 = "14sd2qbbk6y108z6v723mh3f1mk8s4fwxmmn9f8dk4xkhk4rwvq1"; }; - dependencies = [ - "daemons" - "eventmachine" - "rack" - ]; + version = "9.9.0"; }; - "tilt" = { - version = "1.4.1"; + sensu-spawn = { source = { + remotes = ["https://rubygems.org"]; + sha256 = "1vz5kbqk3ld0s16zjl8m38l1m1xwcvjlfc1g4nfm45qxdyfn7la7"; type = "gem"; - sha256 = "00sr3yy7sbqaq7cb2d2kpycajxqf1b1wr1yy33z4bnzmqii0b0ir"; }; + version = "2.2.1"; }; - "uuidtools" = { - version = "2.1.4"; + sensu-transport = { source = { + remotes = ["https://rubygems.org"]; + sha256 = "15yib92hwyd8v04wcc0kaw0p8w2c2mwvi4ldya2jh3dqgs31mvhr"; type = "gem"; - sha256 = "1w0bhnkp5515f3yx5fakfrfkawxjpb4fjm1r2c6lk691xlr696s3"; }; + version = "7.0.2"; }; } \ No newline at end of file diff --git a/pkgs/servers/monitoring/uchiwa/bower-packages.nix b/pkgs/servers/monitoring/uchiwa/bower-packages.nix new file mode 100644 index 000000000000..80e73d632357 --- /dev/null +++ b/pkgs/servers/monitoring/uchiwa/bower-packages.nix @@ -0,0 +1,23 @@ +# Generated by bower2nix v3.1.1 (https://github.com/rvl/bower2nix) +{ fetchbower, buildEnv }: +buildEnv { name = "bower-env"; ignoreCollisions = true; paths = [ + (fetchbower "uchiwa-web" "0.22.1" "0.22.1" "09rhssb5bpwdahdl2fxkjmax8cqg2m51bbf0m3lhkcrcjfc2w8kj") + (fetchbower "angular" "1.4.14" "~1.4" "1j5d80bxqh9lgcbmd661bsk8xrhnf43ym77jsk9n845gqr02bdkl") + (fetchbower "angular-bootstrap" "2.2.0" "~2.2.0" "0zbimxmrmgbz60xg5rnkhv4gd0zvp5fdjdx5407r6a942irfy2x7") + (fetchbower "angular-cookies" "1.4.14" "~1.4" "10z9azpd228jwdn8p767a93xhb5nrypwa0j6491kbcvm2q1k0g6a") + (fetchbower "angular-gravatar" "0.3.2" "~0.3.1" "17d2sc828dsnlkjc4b9irandpimqwan8hlvk9wlmlv8yiyi685p6") + (fetchbower "angular-mass-autocomplete-uchiwa" "0.4.1" "0.4.1" "1h2ypg35f6nd6gy6yznpiadql13lk1gyccq6qd4mvksbyb5va6l5") + (fetchbower "angular-moment" "0.9.2" "~0.9.0" "143vivplxqd03vg23ynad2yrlgn6dmad7avjmzh0ina2qx7zslgf") + (fetchbower "angular-resource" "1.4.14" "~1.4" "1ll2qd0kn39fl5aa49894n1bfcl8dgrfk0w154rkhg7k732q18bk") + (fetchbower "angular-route" "1.4.14" "~1.4" "0wfdgvvldgzf7c4lba3x8mw38l9zwkm0i9fg8ad7pvjkqz133sqs") + (fetchbower "angular-sanitize" "1.4.14" "~1.4" "072b8dcxjp4cjvcjqxsd0bxa8xd2nqvjb1v878qgfkhf0wz44x32") + (fetchbower "angular-toastr" "1.6.0" "1.6.0" "1yksx3a4c3cva5liq087z4j196p0vxp1mzhbr27qr9wmyy6z84z1") + (fetchbower "angular-ua-parser" "0.0.2" "0.0.2" "0z24747b0sywjyzl5chcwr96mpmyr595bry63c4d35mp186ail5z") + (fetchbower "bootstrap" "3.1.1" "3.1.1" "036xbjpv4621p5r2l9vfm9zys6h1mhkvb0zhvk3irrmkzsl77hwh") + (fetchbower "bootstrap-sass-official" "3.1.1" "3.1.1" "0rfmja15p8kxz6i3liwyqrmbm82azq61d3882w2vmp08vvv2c371") + (fetchbower "fontawesome" "4.4.0" "~4.4.0" "1mbs0vhixvg11vj3n0l3jn3pb6s839rcs416zq2wzfqkbvsc3sf5") + (fetchbower "highlightjs" "9.1.0" "~9.1.0" "1gz4q922sylbbqw1sawmjjq8nw0mk90wq0qq95ap0f31px7bfm3f") + (fetchbower "moment" "2.8.4" "~2.8.3" "1h30g5an2m9dja09m1s93hsfb25pzl0iah8mmab7nispl3mb585z") + (fetchbower "ua-parser-js" "0.7.12" "~0.7.12" "1hrhi7cdf5zd86jz7ipbb23qvkfplghfa92wa3aysca1rpg5zgpd") + (fetchbower "jquery" "3.1.1" ">= 1.9.0" "0rkp1hakimnjh3rvlzi30w7qx9x1j0gzjpaajgljn79kd082sgpd") +]; } diff --git a/pkgs/servers/monitoring/uchiwa/bower.json b/pkgs/servers/monitoring/uchiwa/bower.json new file mode 100644 index 000000000000..1eb94f73e6b8 --- /dev/null +++ b/pkgs/servers/monitoring/uchiwa/bower.json @@ -0,0 +1,6 @@ +{ + "name": "uchiwa", + "dependencies": { + "uchiwa-web": "0.21.0" + } +} diff --git a/pkgs/servers/monitoring/uchiwa/default.nix b/pkgs/servers/monitoring/uchiwa/default.nix new file mode 100644 index 000000000000..e7cf3e8f70e4 --- /dev/null +++ b/pkgs/servers/monitoring/uchiwa/default.nix @@ -0,0 +1,50 @@ +{ stdenv, fetchFromGitHub, buildBowerComponents, buildGoPackage, makeWrapper }: + +let + inherit (import ./src.nix) version sha256; + owner = "sensu"; + repo = "uchiwa"; + + src = fetchFromGitHub { + inherit owner repo sha256; + rev = "${version}"; + }; + + backend = buildGoPackage { + name = "uchiwa-backend-${version}"; + goPackagePath = "github.com/${owner}/${repo}"; + inherit src; + postInstall = '' + cp go/src/github.com/sensu/uchiwa/public/index.html $out/ + ''; + }; + + frontend = buildBowerComponents { + name = "uchiwa-frontend-${version}"; + generated = ./bower-packages.nix; + inherit src; + }; + +in stdenv.mkDerivation rec { + name = "uchiwa-${version}"; + + inherit src; + + buildInputs = [ makeWrapper ]; + + buildCommand = '' + mkdir -p $out/bin $out/public + makeWrapper ${backend.bin}/bin/uchiwa $out/bin/uchiwa \ + --add-flags "-p $out/public" + ln -s ${backend.out}/index.html $out/public/index.html + ln -s ${frontend.out}/bower_components $out/public/bower_components + ''; + + meta = with stdenv.lib; { + description = "A Dashboard for the sensu monitoring framework"; + homepage = http://sensuapp.org/; + license = licenses.mit; + maintainers = with maintainers; [ peterhoeg ]; + platforms = platforms.unix; + }; +} diff --git a/pkgs/servers/monitoring/uchiwa/src.nix b/pkgs/servers/monitoring/uchiwa/src.nix new file mode 100644 index 000000000000..68aaa4a5249b --- /dev/null +++ b/pkgs/servers/monitoring/uchiwa/src.nix @@ -0,0 +1,4 @@ +{ + version = "0.22.1"; + sha256 = "15wa7zhchis2rh6jcqkindlidmbf3mryr3apnqnr27ydi2vlqn3g"; +} diff --git a/pkgs/servers/monitoring/uchiwa/update.sh b/pkgs/servers/monitoring/uchiwa/update.sh new file mode 100755 index 000000000000..2802037a4f52 --- /dev/null +++ b/pkgs/servers/monitoring/uchiwa/update.sh @@ -0,0 +1,31 @@ +#!/usr/bin/env nix-shell +#!nix-shell -i bash -p nodePackages.bower2nix curl.bin git.out jq.out + +set -euo pipefail +IFS=$'\n\t' + +# set -x + +REPO=sensu/uchiwa + +VERSION=$(curl https://api.github.com/repos/${REPO}/tags -s | jq '.[0]' -r | jq .name -r) + +t=$(mktemp) + +echo "Updating to: ${VERSION}" + +curl https://raw.githubusercontent.com/${REPO}/${VERSION}/bower.json -s > $t +bower2nix $t bower-packages.nix + +pushd $(git rev-parse --show-toplevel) +sha=$(nix-prefetch-url -A uchiwa.src) +popd + +cat <<_EOF > src.nix +{ + version = "${VERSION}"; + sha256 = "${sha}"; +} +_EOF + +rm $t diff --git a/pkgs/servers/mpd/default.nix b/pkgs/servers/mpd/default.nix index e2ec4a7617d2..87a477ab057d 100644 --- a/pkgs/servers/mpd/default.nix +++ b/pkgs/servers/mpd/default.nix @@ -33,13 +33,13 @@ let opt = stdenv.lib.optional; mkFlag = c: f: if c then "--enable-${f}" else "--disable-${f}"; major = "0.20"; - minor = "4"; + minor = "5"; in stdenv.mkDerivation rec { name = "mpd-${major}${if minor == "" then "" else "." + minor}"; src = fetchurl { url = "http://www.musicpd.org/download/mpd/${major}/${name}.tar.xz"; - sha256 = "0a4psqsf71vc6hfgyv55jclsx8yb7lf4w840qlq6cq8j3hsjaavi"; + sha256 = "11w9v0l9lf504nkxlb91y5r9x403ikl626mjd1lf4fj44yz76maj"; }; patches = [ ./i386.patch ]; diff --git a/pkgs/servers/nosql/neo4j/default.nix b/pkgs/servers/nosql/neo4j/default.nix index 287e92d99cac..f6fcca16081b 100644 --- a/pkgs/servers/nosql/neo4j/default.nix +++ b/pkgs/servers/nosql/neo4j/default.nix @@ -4,11 +4,11 @@ with stdenv.lib; stdenv.mkDerivation rec { name = "neo4j-${version}"; - version = "3.0.6"; + version = "3.1.1"; src = fetchurl { url = "http://dist.neo4j.org/neo4j-community-${version}-unix.tar.gz"; - sha256 = "efeab41183e9e5fa94a2d396c65ea93a24e9f105cb3b5f0d0a8e42fb709f4660"; + sha256 = "1jz257brrrblxq0jdh79mmqand6lwi632y8sy5j6dxl3ssd3hrkx"; }; buildInputs = [ makeWrapper jre8 which gawk ]; @@ -18,7 +18,7 @@ stdenv.mkDerivation rec { cp -R * "$out/share/neo4j" mkdir -p "$out/bin" - for NEO4J_SCRIPT in neo4j neo4j-admin neo4j-import neo4j-shell + for NEO4J_SCRIPT in neo4j neo4j-admin neo4j-import neo4j-shell cypher-shell do makeWrapper "$out/share/neo4j/bin/$NEO4J_SCRIPT" \ "$out/bin/$NEO4J_SCRIPT" \ diff --git a/pkgs/servers/sabnzbd/default.nix b/pkgs/servers/sabnzbd/default.nix index f685d8b24d6b..b754807dc9bd 100644 --- a/pkgs/servers/sabnzbd/default.nix +++ b/pkgs/servers/sabnzbd/default.nix @@ -4,7 +4,7 @@ let pythonEnv = python2.withPackages(ps: with ps; [ cryptography cheetah yenc ]); path = stdenv.lib.makeBinPath [ par2cmdline unrar unzip p7zip ]; in stdenv.mkDerivation rec { - version = "1.2.0"; + version = "1.2.1"; pname = "sabnzbd"; name = "${pname}-${version}"; @@ -12,7 +12,7 @@ in stdenv.mkDerivation rec { owner = pname; repo = pname; rev = version; - sha256 = "1g1zf0zrlqgparg6hws6agpr414dw2q4xq9l8nh720rn6m7fv4vb"; + sha256 = "1rw6f455p0n8qigzkvnlr0d6rzkx2mpzhcp7m0j8fwqdbq831q8y"; }; buildInputs = [ pythonEnv makeWrapper ]; diff --git a/pkgs/servers/sonarr/default.nix b/pkgs/servers/sonarr/default.nix index 6f553f707124..1e7ddb53e23a 100644 --- a/pkgs/servers/sonarr/default.nix +++ b/pkgs/servers/sonarr/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "sonarr-${version}"; - version = "2.0.0.4472"; + version = "2.0.0.4613"; src = fetchurl { url = "http://download.sonarr.tv/v2/master/mono/NzbDrone.master.${version}.mono.tar.gz"; - sha256 = "0sz03z057pyai151lxsdsgxlv6kvrnd1xxw7i1ss7b79l6xgmpw8"; + sha256 = "1a8wm50aw7yyigvywx7hgy58w60mi4s60dqvwwlgrbavl4z5jphl"; }; buildInputs = [ diff --git a/pkgs/servers/sql/mysql/5.7.x.nix b/pkgs/servers/sql/mysql/5.7.x.nix index 71867a94ef25..be4ab80f7052 100644 --- a/pkgs/servers/sql/mysql/5.7.x.nix +++ b/pkgs/servers/sql/mysql/5.7.x.nix @@ -1,5 +1,5 @@ { stdenv, fetchurl, cmake, bison, ncurses, openssl, readline, zlib, perl -, boost, cctools, CoreServices }: +, boost, cctools, CoreServices, developer_cmds }: # Note: zlib is not required; MySQL can use an internal zlib. @@ -18,7 +18,7 @@ stdenv.mkDerivation rec { ''; buildInputs = [ cmake bison ncurses openssl readline zlib boost ] - ++ stdenv.lib.optionals stdenv.isDarwin [ perl cctools CoreServices ]; + ++ stdenv.lib.optionals stdenv.isDarwin [ perl cctools CoreServices developer_cmds ]; enableParallelBuilding = true; diff --git a/pkgs/servers/sql/postgresql/pgjwt/default.nix b/pkgs/servers/sql/postgresql/pgjwt/default.nix new file mode 100644 index 000000000000..b4955f8184c2 --- /dev/null +++ b/pkgs/servers/sql/postgresql/pgjwt/default.nix @@ -0,0 +1,25 @@ +{ stdenv, fetchFromGitHub }: +stdenv.mkDerivation rec { + name = "pgjwt-${version}"; + version = "0.0.1"; + src = fetchFromGitHub { + owner = "michelp"; + repo = "pgjwt"; + rev = "12a41eef15e6d3a22399e03178560d5174d496a3"; + sha256 = "1dgx7kqkf9d7j5qj3xykx238xm8jg0s6c8h7zyl4lx8dmbz9sgsv"; + }; + dontBuild = true; + installPhase = '' + mkdir -p $out/bin # current postgresql extension mechanism in nixos requires bin directory + mkdir -p $out/share/extension + cp pg*sql *.control $out/share/extension + ''; + meta = with stdenv.lib; { + description = "PostgreSQL implementation of JSON Web Tokens"; + longDescription = '' + sign() and verify() functions to create and verify JSON Web Tokens. + ''; + license = licenses.mit; + maintainers = with maintainers; [spinus]; + }; +} diff --git a/pkgs/servers/unifi/default.nix b/pkgs/servers/unifi/default.nix index 0ea5dfd1a0d3..8a411f0c1a52 100644 --- a/pkgs/servers/unifi/default.nix +++ b/pkgs/servers/unifi/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "unifi-controller-${version}"; - version = "5.2.9"; + version = "5.4.11"; src = fetchurl { url = "https://dl.ubnt.com/unifi/${version}/UniFi.unix.zip"; - sha256 = "1521c5jdk5s4r57i7ajzdfq2l4fmvylqlhvddnxllqm6s4yij7fk"; + sha256 = "18hd0w1zif6x9yxmfpwm7vbd07n705lf36yhg3z8fy04an6njgv2"; }; buildInputs = [ unzip ]; diff --git a/pkgs/servers/varnish/default.nix b/pkgs/servers/varnish/default.nix index fc5a744ad46d..e1376a6c59f5 100644 --- a/pkgs/servers/varnish/default.nix +++ b/pkgs/servers/varnish/default.nix @@ -18,6 +18,9 @@ stdenv.mkDerivation rec { buildFlags = "localstatedir=/var/spool"; + # https://github.com/varnishcache/varnish-cache/issues/1875 + NIX_CFLAGS_COMPILE = stdenv.lib.optionalString stdenv.isi686 "-fexcess-precision=standard"; + outputs = [ "out" "dev" "man" ]; meta = with stdenv.lib; { diff --git a/pkgs/servers/x11/xorg/overrides.nix b/pkgs/servers/x11/xorg/overrides.nix index 0afbb21ea228..310bebd382ad 100644 --- a/pkgs/servers/x11/xorg/overrides.nix +++ b/pkgs/servers/x11/xorg/overrides.nix @@ -568,6 +568,10 @@ in url = "https://cgit.freedesktop.org/xorg/driver/xf86-video-xgi/patch/?id=bd94c475035739b42294477cff108e0c5f15ef67"; sha256 = "0myfry07655adhrpypa9rqigd6rfx57pqagcwibxw7ab3wjay9f6"; }) + (args.fetchpatch { + url = "https://cgit.freedesktop.org/xorg/driver/xf86-video-xgi/patch/?id=78d1138dd6e214a200ca66fa9e439ee3c9270ec8"; + sha256 = "0z3643afgrync280zrp531ija0hqxc5mrwjif9nh9lcnzgnz2d6d"; + }) ]; }; diff --git a/pkgs/servers/zookeeper/default.nix b/pkgs/servers/zookeeper/default.nix index 4eecfa418104..16807a6571cd 100644 --- a/pkgs/servers/zookeeper/default.nix +++ b/pkgs/servers/zookeeper/default.nix @@ -1,7 +1,8 @@ { stdenv, fetchurl, jre, makeWrapper, bash }: stdenv.mkDerivation rec { - name = "zookeeper-3.4.9"; + name = "zookeeper-${version}"; + version = "3.4.9"; src = fetchurl { url = "mirror://apache/zookeeper/${name}/${name}.tar.gz"; diff --git a/pkgs/stdenv/generic/default.nix b/pkgs/stdenv/generic/default.nix index 34ba2fd8dd9c..cb94db48f4bd 100644 --- a/pkgs/stdenv/generic/default.nix +++ b/pkgs/stdenv/generic/default.nix @@ -75,6 +75,14 @@ let isUnfree (lib.lists.toList attrs.meta.license) && !allowUnfreePredicate attrs; + allowInsecureDefaultPredicate = x: builtins.elem x.name (config.permittedInsecurePackages or []); + allowInsecurePredicate = x: (config.allowUnfreePredicate or allowInsecureDefaultPredicate) x; + + hasAllowedInsecure = attrs: + (attrs.meta.knownVulnerabilities or []) == [] || + allowInsecurePredicate attrs || + builtins.getEnv "NIXPKGS_ALLOW_INSECURE" == "1"; + showLicense = license: license.shortName or "unknown"; defaultNativeBuildInputs = extraBuildInputs ++ @@ -137,24 +145,62 @@ let builtins.unsafeGetAttrPos "name" attrs; pos'' = if pos' != null then "‘" + pos'.file + ":" + toString pos'.line + "’" else "«unknown-file»"; - throwEvalHelp = { reason, errormsg }: - # uppercase the first character of string s - let up = s: with lib; - (toUpper (substring 0 1 s)) + (substring 1 (stringLength s) s); - in - assert builtins.elem reason ["unfree" "broken" "blacklisted"]; - - throw ("Package ‘${attrs.name or "«name-missing»"}’ in ${pos''} ${errormsg}, refusing to evaluate." - + (lib.strings.optionalString (reason != "blacklisted") '' + remediation = { + unfree = remediate_whitelist "Unfree"; + broken = remediate_whitelist "Broken"; + blacklisted = x: ""; + insecure = remediate_insecure; + }; + remediate_whitelist = allow_attr: attrs: + '' a) For `nixos-rebuild` you can set - { nixpkgs.config.allow${up reason} = true; } + { nixpkgs.config.allow${allow_attr} = true; } in configuration.nix to override this. b) For `nix-env`, `nix-build`, `nix-shell` or any other Nix command you can add - { allow${up reason} = true; } + { allow${allow_attr} = true; } to ~/.config/nixpkgs/config.nix. - '')); + ''; + + remediate_insecure = attrs: + '' + + Known issues: + + '' + (lib.fold (issue: default: "${default} - ${issue}\n") "" attrs.meta.knownVulnerabilities) + '' + + You can install it anyway by whitelisting this package, using the + following methods: + + a) for `nixos-rebuild` you can add ‘${attrs.name or "«name-missing»"}’ to + `nixpkgs.config.permittedInsecurePackages` in the configuration.nix, + like so: + + { + nixpkgs.config.permittedInsecurePackages = [ + "${attrs.name or "«name-missing»"}" + ]; + } + + b) For `nix-env`, `nix-build`, `nix-shell` or any other Nix command you can add + ‘${attrs.name or "«name-missing»"}’ to `permittedInsecurePackages` in + ~/.config/nixpkgs/config.nix, like so: + + { + permittedInsecurePackages = [ + "${attrs.name or "«name-missing»"}" + ]; + } + + ''; + + + throwEvalHelp = { reason , errormsg ? "" }: + throw ('' + Package ‘${attrs.name or "«name-missing»"}’ in ${pos''} ${errormsg}, refusing to evaluate. + + '' + ((builtins.getAttr reason remediation) attrs)); # Check if a derivation is valid, that is whether it passes checks for # e.g brokenness or license. @@ -171,6 +217,8 @@ let { valid = false; reason = "broken"; errormsg = "is marked as broken"; } else if !allowBroken && attrs.meta.platforms or null != null && !lib.lists.elem result.system attrs.meta.platforms then { valid = false; reason = "broken"; errormsg = "is not supported on ‘${result.system}’"; } + else if !(hasAllowedInsecure attrs) then + { valid = false; reason = "insecure"; errormsg = "is marked as insecure"; } else { valid = true; }; outputs' = diff --git a/pkgs/tools/X11/obconf/default.nix b/pkgs/tools/X11/obconf/default.nix index cb3749efb445..49bab143fc22 100644 --- a/pkgs/tools/X11/obconf/default.nix +++ b/pkgs/tools/X11/obconf/default.nix @@ -1,5 +1,5 @@ { stdenv, fetchurl, pkgconfig, gtk2, libglade, openbox, - imlib2, libstartup_notification, makeWrapper }: + imlib2, libstartup_notification, makeWrapper, libSM }: stdenv.mkDerivation rec { name = "obconf-${version}"; @@ -11,7 +11,8 @@ stdenv.mkDerivation rec { }; buildInputs = [ - pkgconfig gtk2 libglade openbox imlib2 libstartup_notification makeWrapper + pkgconfig gtk2 libglade libSM openbox imlib2 libstartup_notification + makeWrapper ]; postInstall = '' diff --git a/pkgs/tools/archivers/afio/afio-2.5.1-install.patch b/pkgs/tools/archivers/afio/afio-2.5.1-install.patch new file mode 100644 index 000000000000..9fa7aacfa887 --- /dev/null +++ b/pkgs/tools/archivers/afio/afio-2.5.1-install.patch @@ -0,0 +1,48 @@ +--- p1/Makefile.orig 2017-02-14 21:40:20.404249126 +0100 ++++ p1/Makefile 2017-02-19 23:38:43.880414077 +0100 +@@ -66,37 +66,42 @@ + # systems the large file compile environment itself might be buggy or beta. + #LARGEFILEFLAGS= + LARGEFILEFLAGS=-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE + + # even more warnings flags.. + MW= + #MW=-Wtraditional -Wcast-qual -Wcast-align -Wconversion -pedantic -Wlong-long -Wimplicit -Wuninitialized -W -Wshadow -Wsign-compare -Wstrict-prototypes -Wmissing-declarations + + CFLAGS1 = -Wall -Wstrict-prototypes -s -O2 -fomit-frame-pointer ${LARGEFILEFLAGS} ${MW} + +-CC=gcc ++#CC=gcc + + CFLAGS = ${CFLAGS1} $1 $2 $3 $4 $5 $6 $7 $8 $9 $a $b $c $d $e ${e2} $f $g $I + LDFLAGS = + + afio : afio.o compfile.o exten.o match.o $M + ${CC} ${LDFLAGS} afio.o compfile.o exten.o match.o $M -o afio + + clean: + rm -f *.o afio + rm -f regtest/cmpstat regtest/makesparse + rm -f regtest/statsize regtest/statsize64 + cd regtest; /bin/sh regtest.clean + ++ifndef DESTDIR ++install: ++ $(error Please specify install prefix as $$DESTDIR) ++else + install: afio +- cp afio /usr/local/bin +- cp afio.1 /usr/share/man/man1 ++ install -Dm755 afio $(DESTDIR)/bin/afio ++ install -Dm644 afio.1 $(DESTDIR)/share/man/man1/afio.1 ++endif + + # generate default list of -E extensions from manpage + # note: on sun, I had to change awk command below to nawk or gawk + # to get it to work. + exten_default.h : afio.1 + awk -f exten_make.awk afio.1 >exten_default.h + + + afio.o : afio.h patchlevel.h + compfile.o : afio.h diff --git a/pkgs/tools/archivers/afio/default.nix b/pkgs/tools/archivers/afio/default.nix new file mode 100644 index 000000000000..551e38a7869d --- /dev/null +++ b/pkgs/tools/archivers/afio/default.nix @@ -0,0 +1,31 @@ +{ stdenv, fetchurl } : + +stdenv.mkDerivation rec { + version = "2.5.1"; + name = "afio-${version}"; + + src = fetchurl { + url = "http://members.chello.nl/~k.holtman/${name}.tgz"; + sha256 = "363457a5d6ee422d9b704ef56d26369ca5ee671d7209cfe799cab6e30bf2b99a"; + }; + + /* + * A patch to simplify the installation and for removing the + * hard coded dependency on GCC. + */ + patches = [ ./afio-2.5.1-install.patch ]; + + installFlags = "DESTDIR=$(out)"; + + meta = { + homepage = http://members.chello.nl/~k.holtman/afio.html; + description = "Fault tolerant cpio archiver targeting backups"; + platforms = stdenv.lib.platforms.all; + /* + * Licensing is complicated due to the age of the code base, but + * generally free. See the file ``afio_license_issues_v5.txt`` for + * a comprehensive discussion. + */ + license = stdenv.lib.licenses.free; + }; +} diff --git a/pkgs/tools/bluetooth/bluedevil/default.nix b/pkgs/tools/bluetooth/bluedevil/default.nix deleted file mode 100644 index e018972d2aaf..000000000000 --- a/pkgs/tools/bluetooth/bluedevil/default.nix +++ /dev/null @@ -1,24 +0,0 @@ -{ stdenv, fetchurl, cmake, automoc4, kdelibs, libbluedevil, shared_mime_info, gettext }: - -stdenv.mkDerivation rec { - name = "${pname}-${version}"; - pname = "bluedevil"; - # bluedevil must have the same major version (x.y) as libbluedevil! - # do not update this package without checking libbluedevil - version = "2.1.1"; - - src = fetchurl { - url = "mirror://kde/stable/${pname}/${version}/src/${name}.tar.xz"; - sha256 = "1rcx1dfm6sm90pvwyq224a1pph96chrmyiv1rry7zpb3hf2c73gi"; - }; - - buildInputs = [ cmake kdelibs libbluedevil shared_mime_info automoc4 gettext ]; - - meta = with stdenv.lib; { - description = "Bluetooth manager for KDE"; - license = stdenv.lib.licenses.gpl2; - inherit (kdelibs.meta) platforms; - maintainers = [ maintainers.phreedom ]; - }; - -} diff --git a/pkgs/tools/compression/dtrx/default.nix b/pkgs/tools/compression/dtrx/default.nix index 4e3f7d3d0dbd..5198cb15a60d 100644 --- a/pkgs/tools/compression/dtrx/default.nix +++ b/pkgs/tools/compression/dtrx/default.nix @@ -17,7 +17,7 @@ in pythonPackages.buildPythonApplication rec { src = fetchurl { url = "http://brettcsmith.org/2007/dtrx/dtrx-${version}.tar.gz"; - sha1 = "05cfe705a04a8b84571b0a5647cd2648720791a4"; + sha256 = "15yf4n27zbhvv0byfv3i89wl5zn6jc2wbc69lk5a3m6rx54gx6hw"; }; postInstall = '' diff --git a/pkgs/tools/compression/zsync/default.nix b/pkgs/tools/compression/zsync/default.nix index 4606d5bf79bd..89016b3ff40f 100644 --- a/pkgs/tools/compression/zsync/default.nix +++ b/pkgs/tools/compression/zsync/default.nix @@ -5,7 +5,7 @@ stdenv.mkDerivation rec { src = fetchurl { url = "http://zsync.moria.org.uk/download/${name}.tar.bz2"; - sha1 = "5e69f084c8adaad6a677b68f7388ae0f9507617a"; + sha256 = "1wjslvfy76szf0mgg2i9y9q30858xyjn6v2acc24zal76d1m778b"; }; meta = { diff --git a/pkgs/tools/filesystems/e2fsprogs/default.nix b/pkgs/tools/filesystems/e2fsprogs/default.nix index c44c92efae00..8703e81fb1dc 100644 --- a/pkgs/tools/filesystems/e2fsprogs/default.nix +++ b/pkgs/tools/filesystems/e2fsprogs/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchurl, pkgconfig, libuuid }: +{ stdenv, fetchurl, pkgconfig, libuuid, gettext }: stdenv.mkDerivation rec { name = "e2fsprogs-1.43.4"; @@ -11,7 +11,7 @@ stdenv.mkDerivation rec { outputs = [ "bin" "dev" "out" "man" ]; nativeBuildInputs = [ pkgconfig ]; - buildInputs = [ libuuid ]; + buildInputs = [ libuuid ] ++ stdenv.lib.optional (!stdenv.isLinux) gettext; crossAttrs = { preConfigure = '' @@ -19,11 +19,15 @@ stdenv.mkDerivation rec { ''; }; - configureFlags = [ - "--enable-elf-shlibs" "--enable-symlink-install" "--enable-relative-symlinks" - # libuuid, libblkid, uuidd and fsck are in util-linux-ng (the "libuuid" dependency). - "--disable-libuuid" "--disable-uuidd" "--disable-libblkid" "--disable-fsck" - ]; + configureFlags = + if stdenv.isLinux then [ + "--enable-elf-shlibs" "--enable-symlink-install" "--enable-relative-symlinks" + # libuuid, libblkid, uuidd and fsck are in util-linux-ng (the "libuuid" dependency). + "--disable-libuuid" "--disable-uuidd" "--disable-libblkid" "--disable-fsck" + ] else [ + "--enable-libuuid --disable-e2initrd-helper" + ] + ; # hacky way to make it install *.pc postInstall = '' @@ -33,10 +37,11 @@ stdenv.mkDerivation rec { enableParallelBuilding = true; - meta = { + meta = with stdenv.lib; { homepage = http://e2fsprogs.sourceforge.net/; description = "Tools for creating and checking ext2/ext3/ext4 filesystems"; - platforms = stdenv.lib.platforms.linux; - maintainers = [ stdenv.lib.maintainers.eelco ]; + license = licenses.gpl2; + platforms = platforms.linux; + maintainers = [ maintainers.eelco ]; }; } diff --git a/pkgs/tools/filesystems/jfsutils/default.nix b/pkgs/tools/filesystems/jfsutils/default.nix index 16d95bd19336..244f3e294a86 100644 --- a/pkgs/tools/filesystems/jfsutils/default.nix +++ b/pkgs/tools/filesystems/jfsutils/default.nix @@ -5,7 +5,7 @@ stdenv.mkDerivation rec { src = fetchurl { url = "http://jfs.sourceforge.net/project/pub/${name}.tar.gz"; - sha1 = "291e8bd9d615cf3d27e4000117c81a3602484a50"; + sha256 = "0kbsy2sk1jv4m82rxyl25gwrlkzvl3hzdga9gshkxkhm83v1aji4"; }; patches = [ ./types.patch ./hardening-format.patch ]; diff --git a/pkgs/tools/filesystems/zkfuse/default.nix b/pkgs/tools/filesystems/zkfuse/default.nix index 04755108bc06..0738ee84cab7 100644 --- a/pkgs/tools/filesystems/zkfuse/default.nix +++ b/pkgs/tools/filesystems/zkfuse/default.nix @@ -1,15 +1,10 @@ { stdenv, lib, zookeeper, zookeeper_mt, fuse, pkgconfig, autoreconfHook, log4cxx, boost, tree }: stdenv.mkDerivation rec { - name = "zkfuse"; + name = "zkfuse-${version}"; + inherit (zookeeper) version src; - src = zookeeper.src; - patches = [ - # see: https://issues.apache.org/jira/browse/ZOOKEEPER-1929 - ./zookeeper-1929.patch - ]; - - setSourceRoot = "export sourceRoot=${zookeeper.name}/src/contrib/zkfuse"; + sourceRoot = "${zookeeper.name}/src/contrib/zkfuse"; buildInputs = [ autoreconfHook zookeeper_mt log4cxx boost fuse ]; diff --git a/pkgs/tools/filesystems/zkfuse/zookeeper-1929.patch b/pkgs/tools/filesystems/zkfuse/zookeeper-1929.patch deleted file mode 100644 index e99dbdf33e03..000000000000 --- a/pkgs/tools/filesystems/zkfuse/zookeeper-1929.patch +++ /dev/null @@ -1,15 +0,0 @@ -diff --git a/src/contrib/zkfuse/src/zkadapter.cc b/src/contrib/zkfuse/src/zkadapter.cc -index 886051d..93dbef5 100644 ---- a/src/zkadapter.cc -+++ b/src/zkadapter.cc -@@ -845,7 +845,10 @@ ZooKeeperAdapter::getNodeData(const string &path, - string("Unable to get data of node ") + path, rc - ); - } else { -- return string( buffer, buffer + len ); -+ if (len == -1) { -+ len = 0; -+ }; -+ return string( buffer, len ); - } - } diff --git a/pkgs/tools/graphics/wavefunctioncollapse/default.nix b/pkgs/tools/graphics/wavefunctioncollapse/default.nix index 32c2104c0f9e..20d07e52f6c7 100644 --- a/pkgs/tools/graphics/wavefunctioncollapse/default.nix +++ b/pkgs/tools/graphics/wavefunctioncollapse/default.nix @@ -1,12 +1,12 @@ {stdenv, fetchFromGitHub, mono}: stdenv.mkDerivation rec { name = "wavefunctioncollapse-${version}"; - version = "0.0pre20160930"; + version = "0.0pre20170130"; src = fetchFromGitHub { owner = "mxgmn"; repo = "WaveFunctionCollapse"; - rev = "333f592b6612da43ec475c988c09325378c662e9"; - sha256 = "1cpwn52ka1zsi2yc7rfg5r9ll2kjgzabx4a5axcp9c4ph5qzsza6"; + rev = "ef660c037b1d7c4ebce66efc625af2bb2f2111c0"; + sha256 = "1dr5fvdgn1jqqacby6rrqm951adx3jw0j70r5i8pmrqnnw482l8m"; }; buildPhase = '' mcs *.cs -out:wavefunctioncollapse.exe -r:System.Drawing diff --git a/pkgs/tools/inputmethods/uim/default.nix b/pkgs/tools/inputmethods/uim/default.nix index 4cab54d0b706..9af5de0476a7 100644 --- a/pkgs/tools/inputmethods/uim/default.nix +++ b/pkgs/tools/inputmethods/uim/default.nix @@ -1,4 +1,4 @@ -{stdenv, fetchurl, intltool, pkgconfig, qt4, gtk2, gtk3, kdelibs, ncurses, +{stdenv, fetchurl, intltool, pkgconfig, qt4, gtk2, gtk3, kdelibs4, ncurses, cmake, anthy, automoc4, m17n_lib, m17n_db}: stdenv.mkDerivation rec { @@ -11,7 +11,7 @@ stdenv.mkDerivation rec { qt4 gtk2 gtk3 - kdelibs + kdelibs4 ncurses cmake anthy diff --git a/pkgs/tools/misc/clipster/default.nix b/pkgs/tools/misc/clipster/default.nix index 445b486c8510..05cc33f8bce1 100644 --- a/pkgs/tools/misc/clipster/default.nix +++ b/pkgs/tools/misc/clipster/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { name = "clipster-unstable-${version}"; - version = "2017-01-12"; + version = "2017-02-17"; src = fetchFromGitHub { owner = "mrichar1"; repo = "clipster"; - rev = "d66fbb098149bef687f062bfa111a21c9121851f"; - sha256 = "0yncjfl0822v2b7f9g7a6ihb99g5hd1s8bfpr2r9nqga6m11k90q"; + rev = "8c4732d7c26ddec6faac295d3ddb2278c6ed5647"; + sha256 = "00ki3srdjh96ghan1z4zd8w5cahgvnpa8hccnxmn0im1xrgpkh3b"; }; pythonEnv = python3.withPackages(ps: with ps; [ pygobject3 ]); diff --git a/pkgs/tools/misc/colord-kde/0.5.nix b/pkgs/tools/misc/colord-kde/0.5.nix deleted file mode 100644 index 0c8e9d6bceef..000000000000 --- a/pkgs/tools/misc/colord-kde/0.5.nix +++ /dev/null @@ -1,30 +0,0 @@ -{ stdenv, lib, fetchurl -, extra-cmake-modules, ki18n -, kconfig, kconfigwidgets, kcoreaddons, kdbusaddons, kiconthemes, kcmutils -, kio, knotifications, plasma-framework, kwidgetsaddons, kwindowsystem -, kitemviews, lcms2, libXrandr, qtx11extras -}: - -stdenv.mkDerivation rec { - name = "colord-kde-${version}"; - version = "0.5.0"; - - src = fetchurl { - url = "http://download.kde.org/stable/colord-kde/${version}/src/${name}.tar.xz"; - sha256 = "0brdnpflm95vf4l41clrqxwvjrdwhs859n7401wxcykkmw4m0m3c"; - }; - - nativeBuildInputs = [ extra-cmake-modules ki18n ]; - - buildInputs = [ - kconfig kconfigwidgets kcoreaddons kdbusaddons kiconthemes - kcmutils kio knotifications plasma-framework kwidgetsaddons - kwindowsystem kitemviews lcms2 libXrandr qtx11extras - ]; - - meta = with lib; { - homepage = "https://projects.kde.org/projects/playground/graphics/colord-kde"; - license = licenses.gpl2Plus; - maintainers = with maintainers; [ ttuegel ]; - }; -} diff --git a/pkgs/tools/misc/colord-kde/default.nix b/pkgs/tools/misc/colord-kde/default.nix index 52e1845b300f..0c8e9d6bceef 100644 --- a/pkgs/tools/misc/colord-kde/default.nix +++ b/pkgs/tools/misc/colord-kde/default.nix @@ -1,26 +1,30 @@ -{ stdenv, fetchurl, automoc4, cmake, perl, pkgconfig -, colord, libX11, libXrandr, lcms2, kdelibs +{ stdenv, lib, fetchurl +, extra-cmake-modules, ki18n +, kconfig, kconfigwidgets, kcoreaddons, kdbusaddons, kiconthemes, kcmutils +, kio, knotifications, plasma-framework, kwidgetsaddons, kwindowsystem +, kitemviews, lcms2, libXrandr, qtx11extras }: -stdenv.mkDerivation { - name = "colord-kde-0.3.0"; +stdenv.mkDerivation rec { + name = "colord-kde-${version}"; + version = "0.5.0"; src = fetchurl { - url = http://download.kde.org/stable/colord-kde/0.3.0/src/colord-kde-0.3.0.tar.bz2; - sha256 = "ab3cdb7c8c98aa2ee8de32a92f87770e1fbd58eade6471f3f24d932b50b4cf09"; + url = "http://download.kde.org/stable/colord-kde/${version}/src/${name}.tar.xz"; + sha256 = "0brdnpflm95vf4l41clrqxwvjrdwhs859n7401wxcykkmw4m0m3c"; }; - nativeBuildInputs = [ automoc4 cmake perl pkgconfig ]; + nativeBuildInputs = [ extra-cmake-modules ki18n ]; - buildInputs = [ colord libX11 libXrandr lcms2 kdelibs ]; + buildInputs = [ + kconfig kconfigwidgets kcoreaddons kdbusaddons kiconthemes + kcmutils kio knotifications plasma-framework kwidgetsaddons + kwindowsystem kitemviews lcms2 libXrandr qtx11extras + ]; - patches = [ ./fix_check_include_files.patch ]; - patchFlags = [ "-p0" ]; - - enableParallelBuilding = true; - - meta = { - description = "A colord front-end for KDE"; - license = stdenv.lib.licenses.gpl2Plus; + meta = with lib; { + homepage = "https://projects.kde.org/projects/playground/graphics/colord-kde"; + license = licenses.gpl2Plus; + maintainers = with maintainers; [ ttuegel ]; }; } diff --git a/pkgs/tools/misc/colord-kde/fix_check_include_files.patch b/pkgs/tools/misc/colord-kde/fix_check_include_files.patch deleted file mode 100644 index 16d14a6a647a..000000000000 --- a/pkgs/tools/misc/colord-kde/fix_check_include_files.patch +++ /dev/null @@ -1,9 +0,0 @@ ---- CMakeLists.txt.orig 2013-05-01 05:04:34.000000000 +1000 -+++ CMakeLists.txt 2015-12-10 20:43:51.351800988 +1100 -@@ -9,6 +9,7 @@ - include(FindPkgConfig) - include(KDE4Defaults) -+include(CheckIncludeFiles) - include(ConfigureChecks.cmake) - - message(STATUS "X randr is required, found: " ${XRANDR_1_3_FOUND}) \ No newline at end of file diff --git a/pkgs/tools/misc/findutils/default.nix b/pkgs/tools/misc/findutils/default.nix index 30716146ec59..53d75485d5ca 100644 --- a/pkgs/tools/misc/findutils/default.nix +++ b/pkgs/tools/misc/findutils/default.nix @@ -20,8 +20,8 @@ stdenv.mkDerivation rec { configureFlags = [ "--localstatedir=/var/cache" ]; crossAttrs = { - # http://osdir.com/ml/bug-findutils-gnu/2009-08/msg00026.html - configureFlags = [ "gl_cv_func_wcwidth_works=yes" ]; + # Fix the 'buildInputs = [ coreutils ]' above - that adds the cross coreutils to PATH :( + propagatedBuildInputs = [ ]; }; enableParallelBuilding = true; diff --git a/pkgs/tools/misc/graylog/default.nix b/pkgs/tools/misc/graylog/default.nix index ae26bad5bc81..68ee65159954 100644 --- a/pkgs/tools/misc/graylog/default.nix +++ b/pkgs/tools/misc/graylog/default.nix @@ -1,12 +1,12 @@ { stdenv, fetchurl }: stdenv.mkDerivation rec { - version = "2.1.2"; + version = "2.2.1"; name = "graylog-${version}"; src = fetchurl { url = "https://packages.graylog2.org/releases/graylog/graylog-${version}.tgz"; - sha256 = "0jwm1l3s00rh22gqvkg730h8xm4h1y1dr60m4s5xbz8qzdkk8rax"; + sha256 = "19kwg6yn2bx9nk813d7z1mv5j375iy2qvpcvwm8hp242g13j5cy7"; }; dontBuild = true; diff --git a/pkgs/tools/misc/graylog/plugins.nix b/pkgs/tools/misc/graylog/plugins.nix new file mode 100644 index 000000000000..979f409dde93 --- /dev/null +++ b/pkgs/tools/misc/graylog/plugins.nix @@ -0,0 +1,129 @@ +{ pkgs, stdenv, fetchurl, fetchFromGitHub, unzip, graylog }: + +with pkgs.lib; + +let + glPlugin = a@{ + pluginName, + version, + installPhase ? '' + mkdir -p $out/bin + cp $src $out/bin/${pluginName}-${version}.jar + '', + ... + }: + stdenv.mkDerivation (a // { + inherit installPhase; + unpackPhase = "true"; + buildInputs = [ unzip ]; + meta = a.meta // { + platforms = graylog.meta.platforms; + maintainers = (a.meta.maintainers or []) ++ [ maintainers.fadenb ]; + }; + }); +in { + auth_sso = glPlugin rec { + name = "graylog-auth-sso-${version}"; + pluginName = "graylog-plugin-auth-sso"; + version = "1.0.6"; + src = fetchurl { + url = "https://github.com/Graylog2/${pluginName}/releases/download/${version}/${pluginName}-${version}.jar"; + sha256 = "0wvdf2rnjrhdw1vp7bc7008s45rggzq57lh8k6s3q35rppligaqd"; + }; + meta = { + homepage = "https://github.com/Graylog2/graylog-plugin-auth-sso"; + description = "SSO support for Graylog through trusted HTTP headers set by load balancers or authentication proxies"; + }; + }; + ipanonymizer = glPlugin rec { + name = "graylog-ipanonymizer-${version}"; + pluginName = "graylog-plugin-ipanonymizer"; + version = "1.1.2"; + src = fetchurl { + url = "https://github.com/Graylog2/${pluginName}/releases/download/${version}/${pluginName}-${version}.jar"; + sha256 = "0hd66751hp97ddkn29s1cmjmc2h1nrp431bq7d2wq16iyxxlygri"; + }; + meta = { + homepage = "https://github.com/Graylog2/graylog-plugin-ipanonymizer"; + description = "A graylog-server plugin that replaces the last octet of IP addresses in messages with xxx"; + }; + }; + jabber = glPlugin rec { + name = "graylog-jabber-${version}"; + pluginName = "graylog-plugin-jabber"; + version = "1.2.1"; + src = fetchurl { + url = "https://github.com/Graylog2/${pluginName}/releases/download/v${version}/${pluginName}-${version}.jar"; + sha256 = "1r12hpjp2ggmhsapgrk829va94aw44qi2kqqkgf1fj9ih4k0c837"; + }; + meta = { + homepage = "https://github.com/Graylog2/graylog-plugin-jabber"; + description = "Jabber Alarmcallback Plugin for Graylog"; + }; + }; + netflow = glPlugin rec { + name = "graylog-netflow-${version}"; + pluginName = "graylog-plugin-netflow"; + version = "0.1.1"; + src = fetchurl { + url = "https://github.com/Graylog2/${pluginName}/releases/download/${version}/${pluginName}-${version}.jar"; + sha256 = "1pdv12f9dca1rxf62ds51n79cjhkkyj0gjny8kj1cq64vlayc9x9"; + }; + meta = { + homepage = "https://github.com/Graylog2/graylog-plugin-netflow"; + description = "Graylog NetFlow plugin"; + }; + }; + redis = glPlugin rec { + name = "graylog-redis-${version}"; + pluginName = "graylog-plugin-redis"; + version = "0.1.0"; + src = fetchurl { + url = "https://github.com/Graylog2/${pluginName}/releases/download/${version}/${pluginName}-${version}.jar"; + sha256 = "0hwz83m9gwx0fdapc63v3lr1q6acbphssqwp4qqzz78wg2w79xgi"; + }; + meta = { + homepage = "https://github.com/Graylog2/graylog-plugin-redis"; + description = "Redis plugin for Graylog"; + }; + }; + spaceweather = glPlugin rec { + name = "graylog-spaceweather-${version}"; + pluginName = "graylog-plugin-spaceweather"; + version = "1.0"; + src = fetchurl { + url = "https://github.com/Graylog2/${pluginName}/releases/download/${version}/spaceweather-input.jar"; + sha256 = "1mwqy3fhyy4zdwyrzvbr565xwf96xs9d3l70l0khmrm848xf8wz4"; + }; + meta = { + homepage = "https://github.com/Graylog2/graylog-plugin-spaceweather"; + description = "Correlate proton density to the response time of your app and the ion temperature to your exception rate."; + }; + }; + threatintel = glPlugin rec { + name = "graylog-threatintel-${version}"; + pluginName = "graylog-plugin-threatintel"; + version = "0.9.2"; + src = fetchurl { + url = "https://github.com/Graylog2/${pluginName}/releases/download/${version}/${pluginName}-${version}.jar"; + sha256 = "0d2cjcgjwfqp6b756n68zbslm1pq1z9dhn6iiskmv6jdpkffjw3l"; + }; + meta = { + homepage = "https://github.com/Graylog2/graylog-plugin-threatintel"; + description = "Graylog Processing Pipeline functions to enrich log messages with IoC information from threat intelligence databases"; + }; + }; + twitter = glPlugin rec { + name = "graylog-twitter-${version}"; + pluginName = "graylog-plugin-twitter"; + version = "2.0.0"; + src = fetchurl { + url = "https://github.com/Graylog2/${pluginName}/releases/download/${version}/${pluginName}-${version}.jar"; + sha256 = "1pi34swy9nzq35a823zzvqrjhb6wsg302z31vk2y656sw6ljjxyh"; + }; + meta = { + homepage = "https://github.com/Graylog2/graylog-plugin-twitter"; + description = "Graylog input plugin that reads Twitter messages based on keywords in realtime"; + }; + }; +} diff --git a/pkgs/tools/misc/kde-gtk-config/default.nix b/pkgs/tools/misc/kde-gtk-config/default.nix deleted file mode 100644 index 41aaad553463..000000000000 --- a/pkgs/tools/misc/kde-gtk-config/default.nix +++ /dev/null @@ -1,47 +0,0 @@ -{ stdenv, fetchurl, automoc4, cmake, gettext, perl, pkgconfig -, gtk2, gtk3, kdelibs, libxcb, libpthreadstubs, libXdmcp -, glib, gdk_pixbuf -}: - -stdenv.mkDerivation { - name = "kde-gtk-config-2.2.1"; - src = fetchurl { - url = "mirror://kde/stable/kde-gtk-config/2.2.1/src/kde-gtk-config-2.2.1.tar.xz"; - sha256 = "11aw86jcjcg3ywnzrxy9x8dvd73my18k0if52fnvyvmb75z0v2cw"; - }; - - buildInputs = [ - gdk_pixbuf glib gtk2 gtk3 kdelibs libxcb libpthreadstubs libXdmcp - ]; - - nativeBuildInputs = [ automoc4 cmake gettext perl pkgconfig ]; - - patches = [ - ./kde-gtk-config-2.2.1-install-paths.patch - ./kde-gtk-config-follow-symlinks.patch - ]; - - cmakeFlags = '' - -DGTK2_GLIBCONFIG_INCLUDE_DIR=${glib.out}/lib/glib-2.0/include - -DGTK2_GDKCONFIG_INCLUDE_DIR=${gtk2.out}/lib/gtk-2.0/include - -DGTK2_INCLUDE_DIRS=${gtk2.dev}/include/gtk-2.0 - -DKDE4_LIBEXEC_INSTALL_DIR=lib/kde4/libexec - ''; - - meta = with stdenv.lib; { - homepage = https://projects.kde.org/projects/extragear/base/kde-gtk-config; - description = "GTK configuration module for KDE System Settings"; - longDescription = '' - Configuration dialog to adapt GTK applications appearance to your taste under KDE. - Among its many features, it lets you: - - Choose which theme is used for GTK2 and GTK3 applications. - - Tweak some GTK applications behaviour. - - Select what icon theme to use in GTK applications. - - Select GTK applications default fonts. - - Easily browse and install new GTK2 and GTK3 themes. - ''; - platforms = platforms.linux; - license = licenses.gpl3; - maintainers = [ maintainers.ttuegel ]; - }; -} diff --git a/pkgs/tools/misc/kde-gtk-config/kde-gtk-config-2.2.1-install-paths.patch b/pkgs/tools/misc/kde-gtk-config/kde-gtk-config-2.2.1-install-paths.patch deleted file mode 100644 index e6596ef0dcc7..000000000000 --- a/pkgs/tools/misc/kde-gtk-config/kde-gtk-config-2.2.1-install-paths.patch +++ /dev/null @@ -1,28 +0,0 @@ -diff -ur kde-gtk-config-2.2.1-a/gtk3proxies/CMakeLists.txt kde-gtk-config-2.2.1-b/gtk3proxies/CMakeLists.txt ---- kde-gtk-config-2.2.1-a/gtk3proxies/CMakeLists.txt 2013-03-18 06:02:39.000000000 -0500 -+++ kde-gtk-config-2.2.1-b/gtk3proxies/CMakeLists.txt 2013-12-24 18:57:59.854264894 -0600 -@@ -6,4 +6,4 @@ - - add_executable(gtk3_preview preview3.c) - target_link_libraries(gtk3_preview ${GTK3_LIBRARY} ${GOBJECT2_LIBRARY} ${GLIB2_LIBRARY}) --install(TARGETS gtk3_preview RUNTIME DESTINATION "${KDE4_LIBEXEC_INSTALL_DIR}") -+install(TARGETS gtk3_preview RUNTIME DESTINATION bin) -diff -ur kde-gtk-config-2.2.1-a/gtkproxies/CMakeLists.txt kde-gtk-config-2.2.1-b/gtkproxies/CMakeLists.txt ---- kde-gtk-config-2.2.1-a/gtkproxies/CMakeLists.txt 2013-03-18 06:02:39.000000000 -0500 -+++ kde-gtk-config-2.2.1-b/gtkproxies/CMakeLists.txt 2013-12-24 18:57:40.967781611 -0600 -@@ -4,13 +4,13 @@ - - add_executable(reload_gtk_apps reload.c) - target_link_libraries(reload_gtk_apps ${GTK2_LIBRARIES}) --install(TARGETS reload_gtk_apps RUNTIME DESTINATION "${KDE4_LIBEXEC_INSTALL_DIR}") -+install(TARGETS reload_gtk_apps RUNTIME DESTINATION bin) - - add_definitions("-DDATA_DIR=\\\"${DATA_INSTALL_DIR}/kcm-gtk-module/\\\"") - - add_executable(gtk_preview preview.c) - target_link_libraries(gtk_preview ${GTK2_LIBRARIES} ${GTK2_GIOMM_LIBRARY}) --install(TARGETS gtk_preview RUNTIME DESTINATION "${KDE4_LIBEXEC_INSTALL_DIR}") -+install(TARGETS gtk_preview RUNTIME DESTINATION bin) - - # preview file used for the gtk3 version too - install(FILES preview.ui diff --git a/pkgs/tools/misc/kde-gtk-config/kde-gtk-config-follow-symlinks.patch b/pkgs/tools/misc/kde-gtk-config/kde-gtk-config-follow-symlinks.patch deleted file mode 100644 index e291589e82e3..000000000000 --- a/pkgs/tools/misc/kde-gtk-config/kde-gtk-config-follow-symlinks.patch +++ /dev/null @@ -1,13 +0,0 @@ -diff --git a/src/appearancegtk2.cpp b/src/appearancegtk2.cpp -index 3d89c82..4dcce69 100644 ---- a/src/appearancegtk2.cpp -+++ b/src/appearancegtk2.cpp -@@ -56,7 +56,7 @@ QString AppearanceGTK2::themesGtkrcFile(const QString& themeName) const - QStringList themes=installedThemes(); - themes=themes.filter(QRegExp("/"+themeName+"/?$")); - if(themes.size()==1) { -- QDirIterator it(themes.first(), QDirIterator::Subdirectories); -+ QDirIterator it(themes.first(), QDirIterator::Subdirectories | QDirIterator::FollowSymlinks); - while(it.hasNext()) { - it.next(); - if(it.fileName()=="gtkrc") { diff --git a/pkgs/tools/misc/kdecoration-viewer/default.nix b/pkgs/tools/misc/kdecoration-viewer/default.nix index c32a814f2328..33ccf28cb0da 100644 --- a/pkgs/tools/misc/kdecoration-viewer/default.nix +++ b/pkgs/tools/misc/kdecoration-viewer/default.nix @@ -1,5 +1,5 @@ { stdenv, fetchFromGitHub -, cmake, ecm, qtquickcontrols, kconfigwidgets, kdeclarative, kdecoration }: +, cmake, extra-cmake-modules, qtquickcontrols, kconfigwidgets, kdeclarative, kdecoration }: stdenv.mkDerivation rec { name = "kdecoration-viewer-2015-08-20"; @@ -11,7 +11,7 @@ stdenv.mkDerivation rec { sha256 = "1cc4xxv72a82p1w9r76090xba7g069r41bi4zx32k4gz3vyl1am6"; }; - buildInputs = [ cmake ecm qtquickcontrols kconfigwidgets kdeclarative kdecoration ]; + buildInputs = [ cmake extra-cmake-modules qtquickcontrols kconfigwidgets kdeclarative kdecoration ]; meta = with stdenv.lib; { description = "Allows to preview a KDecoration plugin"; diff --git a/pkgs/tools/misc/kronometer/default.nix b/pkgs/tools/misc/kronometer/default.nix index 598d01266233..5ba2543e273d 100644 --- a/pkgs/tools/misc/kronometer/default.nix +++ b/pkgs/tools/misc/kronometer/default.nix @@ -1,6 +1,6 @@ { kdeDerivation, kdeWrapper, fetchurl, lib, - ecm, kdoctools, + extra-cmake-modules, kdoctools, kconfig, kinit }: @@ -19,7 +19,7 @@ let license = licenses.gpl2; maintainers = with maintainers; [ peterhoeg ]; }; - nativeBuildInputs = [ ecm kdoctools ]; + nativeBuildInputs = [ extra-cmake-modules kdoctools ]; propagatedBuildInputs = [ kconfig kinit ]; }; in diff --git a/pkgs/tools/misc/partition-manager/default.nix b/pkgs/tools/misc/partition-manager/default.nix deleted file mode 100644 index 156f03dad876..000000000000 --- a/pkgs/tools/misc/partition-manager/default.nix +++ /dev/null @@ -1,39 +0,0 @@ -{ stdenv, fetchurl, pkgconfig, cmake, gettext, automoc4, perl -, parted, libuuid, qt4, kdelibs, kde_baseapps, phonon, libatasmart -}: - -stdenv.mkDerivation rec { - name = "partitionmanager-1.0.3_p20120804"; - - src = fetchurl { - #url = "mirror://sourceforge/partitionman/${name}.tar.bz2"; - # the upstream version is old and doesn't build - url = "http://dev.gentoo.org/~kensington/distfiles/${name}.tar.bz2"; - sha256 = "1j6zpgj8xs98alzxvcibwch9yj8jsx0s7y864gbdx280jmj8c1np"; - }; - - buildInputs = [ - pkgconfig cmake gettext automoc4 perl - parted libuuid qt4 kdelibs kde_baseapps phonon libatasmart - ]; - - preConfigure = '' - export VERBOSE=1 - cmakeFlagsArray=($cmakeFlagsArray -DGETTEXT_INCLUDE_DIR=${gettext}/include -DCMAKE_INCLUDE_PATH=${qt4}/include/QtGui ) - ''; - - postInstall = '' - set -x - rpath=`patchelf --print-rpath $out/bin/partitionmanager-bin`:${qt4}/lib - for p in $out/bin/partitionmanager-bin; do - patchelf --set-rpath $rpath $p - done - ''; - - meta = { - description = "Utility program to help you manage the disk devices"; - homepage = http://www.kde-apps.org/content/show.php/KDE+Partition+Manager?content=89595; # ? - license = stdenv.lib.licenses.gpl2; - platforms = stdenv.lib.platforms.linux; - }; -} diff --git a/pkgs/tools/misc/peruse/default.nix b/pkgs/tools/misc/peruse/default.nix index 61e9fae906b5..1c7a28e29756 100644 --- a/pkgs/tools/misc/peruse/default.nix +++ b/pkgs/tools/misc/peruse/default.nix @@ -1,6 +1,6 @@ { kdeDerivation, kdeWrapper, fetchFromGitHub, fetchurl, lib, - ecm, kdoctools, + extra-cmake-modules, kdoctools, baloo, kconfig, kfilemetadata, kinit, kirigami, knewstuff, plasma-framework }: @@ -21,7 +21,7 @@ let sha256 = "1ik2627xynkichsq9x28rkczqn3l3p06q6vw5jdafdh3hisccmjq"; }; - nativeBuildInputs = [ ecm kdoctools ]; + nativeBuildInputs = [ extra-cmake-modules kdoctools ]; propagatedBuildInputs = [ baloo kconfig kfilemetadata kinit kirigami knewstuff plasma-framework ]; diff --git a/pkgs/tools/misc/vfdecrypt/default.nix b/pkgs/tools/misc/vfdecrypt/default.nix index 552fa0c763dd..83b91f6203ed 100644 --- a/pkgs/tools/misc/vfdecrypt/default.nix +++ b/pkgs/tools/misc/vfdecrypt/default.nix @@ -1,17 +1,26 @@ -{ stdenv, fetchgit, openssl }: +{ stdenv, fetchFromGitHub, openssl }: stdenv.mkDerivation rec { - name = "vfdecrypt"; + name = "vfdecrypt-${version}"; + version = "unstable-2010-08-13"; - src = fetchgit { - url = git://github.com/drakealleg/VFDecrypt.git; + src = fetchFromGitHub { + owner = "Tomer1510"; + repo = "VFDecrypt"; rev = "4e2fa32816254907e82886b936afcae9859a876c"; sha256 = "0b945805f7f60bf48556c2db45c9ab26485fb05acbc6160a563d529b20cb56a3"; }; + buildInputs = [ openssl ]; - broken = true; # No such repo + installPhase = '' mkdir -p $out/bin cp vfdecrypt $out/bin ''; + + meta = with stdenv.lib; { + description = "A cross platform dmg decryption tool"; + license = licenses.mit; + inherit (src.meta) homepage; + }; } diff --git a/pkgs/tools/misc/wv2/default.nix b/pkgs/tools/misc/wv2/default.nix index 1c2c94ff89ca..f39eaf0b047b 100644 --- a/pkgs/tools/misc/wv2/default.nix +++ b/pkgs/tools/misc/wv2/default.nix @@ -11,6 +11,8 @@ stdenv.mkDerivation rec { buildInputs = [ pkgconfig cmake libgsf glib libxml2 ]; + NIX_CFLAGS_COMPILE = "-I${libxml2.dev}/include/libxml2"; + meta = { description = "Excellent MS Word filter lib, used in most Office suites"; license = stdenv.lib.licenses.lgpl2; diff --git a/pkgs/tools/misc/youtube-dl/default.nix b/pkgs/tools/misc/youtube-dl/default.nix index 175281d2a48f..b3104d6629d7 100644 --- a/pkgs/tools/misc/youtube-dl/default.nix +++ b/pkgs/tools/misc/youtube-dl/default.nix @@ -14,11 +14,11 @@ with stdenv.lib; buildPythonApplication rec { name = "youtube-dl-${version}"; - version = "2017.02.17"; + version = "2017.02.24.1"; src = fetchurl { url = "https://yt-dl.org/downloads/${version}/${name}.tar.gz"; - sha256 = "06k0g3s0c27f0kwhvm2gpk01q0q0cbhqh09zvh19svl1zc2ky72b"; + sha256 = "1m2mmnjf7zw0vsbw6vjl8b4p8wa3jdmdzli970cp26awgkq5c15v"; }; buildInputs = [ zip makeWrapper ] ++ optional generateManPage pandoc; diff --git a/pkgs/tools/networking/dnsperf/default.nix b/pkgs/tools/networking/dnsperf/default.nix new file mode 100644 index 000000000000..c65e47a88b09 --- /dev/null +++ b/pkgs/tools/networking/dnsperf/default.nix @@ -0,0 +1,32 @@ +{ stdenv, fetchurl, bind, libseccomp, zlib }: + +stdenv.mkDerivation rec { + name = "dnsperf-${version}"; + version = "2.1.0.0"; + + src = fetchurl { + url = "ftp://ftp.nominum.com/pub/nominum/dnsperf/${version}/" + + "dnsperf-src-${version}-1.tar.gz"; + sha256 = "03kfc65s5a9csa5i7xjsv0psq144k8d9yw7xlny61bg1h2kg1db4"; + }; + + outputs = [ "out" "doc" ]; + + buildInputs = [ bind libseccomp zlib ]; + + postInstall = '' + mkdir -p "$out/share/doc/" + cp -r ./doc "$out/share/doc/dnsperf" + ''; + + meta = with stdenv.lib; { + outputsToInstall = outputs; # The man pages and PDFs are likely useful to most. + + description = "Tools for DNS benchmaring"; + homepage = https://nominum.com/measurement-tools/; + license = licenses.isc; + platforms = platforms.unix; + maintainers = [ maintainers.vcunat ]; + }; +} + diff --git a/pkgs/tools/networking/httpie/default.nix b/pkgs/tools/networking/httpie/default.nix index fe30fd949675..09200f40c934 100644 --- a/pkgs/tools/networking/httpie/default.nix +++ b/pkgs/tools/networking/httpie/default.nix @@ -1,12 +1,12 @@ { stdenv, fetchurl, pythonPackages }: pythonPackages.buildPythonApplication rec { - name = "httpie-0.9.8"; + name = "httpie-0.9.9"; namePrefix = ""; src = fetchurl { url = "mirror://pypi/h/httpie/${name}.tar.gz"; - sha256 = "1qgn1mpkk8wxxhvgxw3fnscqg3klh42ijr11zrb0ylriaaqp0n2i"; + sha256 = "1jsgfkyzzizgfy1b0aicb4cp34d5pwskz9c4a8kf4rq3lrpjw87i"; }; propagatedBuildInputs = with pythonPackages; [ pygments requests2 ]; diff --git a/pkgs/tools/networking/linkchecker/default.nix b/pkgs/tools/networking/linkchecker/default.nix index 59699076a3ac..d6906fdc554f 100644 --- a/pkgs/tools/networking/linkchecker/default.nix +++ b/pkgs/tools/networking/linkchecker/default.nix @@ -26,6 +26,10 @@ python2Packages.buildPythonApplication rec { checkPhase = '' # the mime test fails for me... rm tests/test_mimeutil.py + ${lib.optionalString stdenv.isDarwin '' + # network tests fails on darwin + rm tests/test_network.py + ''} make test PYTESTOPTS="--tb=short" TESTS="tests/test_*.py tests/logger/test_*.py" ''; diff --git a/pkgs/tools/networking/nzbget/default.nix b/pkgs/tools/networking/nzbget/default.nix index 18995553d0a3..5cffb6c5c0e4 100644 --- a/pkgs/tools/networking/nzbget/default.nix +++ b/pkgs/tools/networking/nzbget/default.nix @@ -3,11 +3,11 @@ stdenv.mkDerivation rec { name = "nzbget-${version}"; - version = "17.1"; + version = "18.0"; src = fetchurl { url = "http://github.com/nzbget/nzbget/releases/download/v${version}/nzbget-${version}-src.tar.gz"; - sha256 = "0fcw43bigjmgxcz1jvqpd01sz4vciqsm311cbfv9lvmvv40gag2b"; + sha256 = "0nzm2qbhwrbq02ynfl2vgs6k58bk5fk45d3547a4g1lqhri3dijb"; }; buildInputs = [ pkgconfig libxml2 ncurses libsigcxx libpar2 gnutls diff --git a/pkgs/tools/networking/plasma-nm/default.nix b/pkgs/tools/networking/plasma-nm/default.nix deleted file mode 100644 index f0f379d38295..000000000000 --- a/pkgs/tools/networking/plasma-nm/default.nix +++ /dev/null @@ -1,29 +0,0 @@ -{ stdenv, fetchurl, automoc4, cmake, gettext, perl, pkgconfig -, kdelibs, networkmanager, libnm-qt, glib }: - -let - pname = "plasma-nm"; - version = "0.9.3.4"; - name = "${pname}-${version}"; -in -stdenv.mkDerivation { - inherit name; - - src = fetchurl { - url = "mirror://kde/stable/${pname}/${name}.tar.xz"; - sha256 = "0xj14isvjq8ll70b6q66n8adm8ff4j9ng195ndk2gmavjf6bb751"; - }; - - NIX_CFLAGS_COMPILE = "-I${glib.dev}/include/glib-2.0 -I${glib.out}/lib/glib-2.0/include"; - - nativeBuildInputs = [ automoc4 cmake gettext perl pkgconfig ]; - - buildInputs = [ kdelibs networkmanager libnm-qt ]; - - meta = with stdenv.lib; { - homepage = "https://projects.kde.org/projects/kde/workspace/plasma-nm"; - description = "Plasma applet written in QML for managing network connections"; - license = licenses.lgpl21; - inherit (kdelibs.meta) platforms; - }; -} diff --git a/pkgs/tools/networking/samplicator/default.nix b/pkgs/tools/networking/samplicator/default.nix index 3daea665929b..1b537870b09d 100644 --- a/pkgs/tools/networking/samplicator/default.nix +++ b/pkgs/tools/networking/samplicator/default.nix @@ -1,17 +1,21 @@ -{ stdenv, fetchurl }: +{ stdenv, fetchFromGitHub, autoreconfHook }: stdenv.mkDerivation rec { name = "samplicator-${version}"; - version = "1.3.7-beta6"; + version = "1.3.8rc1"; - src = fetchurl { - url = "http://samplicator.googlecode.com/files/${name}.tar.gz"; - sha1 = "2091af1898d6508ad9fd338a07e352e2387522d4"; + buildInputs = [ autoreconfHook ]; + + src = fetchFromGitHub { + owner = "sleinen"; + repo = "samplicator"; + rev = version; + sha256 = "0fv5vldmwd6qrdv2wkk946dk9rn9nrv3c84ldvvqqn1spxfzgirm"; }; meta = { description = "Send copies of (UDP) datagrams to multiple receivers"; - homepage = "http://code.google.com/p/samplicator/"; + homepage = https://github.com/sleinen/samplicator/; license = stdenv.lib.licenses.gpl2Plus; platforms = stdenv.lib.platforms.unix; }; diff --git a/pkgs/tools/networking/uget/default.nix b/pkgs/tools/networking/uget/default.nix index 2408337d819e..b5119bc594b7 100644 --- a/pkgs/tools/networking/uget/default.nix +++ b/pkgs/tools/networking/uget/default.nix @@ -1,5 +1,5 @@ { stdenv, fetchurl, pkgconfig, intltool, openssl, curl, libnotify, gstreamer, - gst_plugins_base, gst_plugins_good, gnome3, makeWrapper, aria2 ? null }: + gst-plugins-base, gst-plugins-good, gnome3, makeWrapper, aria2 ? null }: stdenv.mkDerivation rec { name = "uget-${version}"; @@ -13,7 +13,7 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ pkgconfig intltool makeWrapper ]; buildInputs = [ - openssl curl libnotify gstreamer gst_plugins_base gst_plugins_good + openssl curl libnotify gstreamer gst-plugins-base gst-plugins-good gnome3.gtk gnome3.dconf ] ++ (stdenv.lib.optional (aria2 != null) aria2); diff --git a/pkgs/tools/networking/unbound/default.nix b/pkgs/tools/networking/unbound/default.nix index f32a90a871ae..c263da6efe6b 100644 --- a/pkgs/tools/networking/unbound/default.nix +++ b/pkgs/tools/networking/unbound/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "unbound-${version}"; - version = "1.6.0"; + version = "1.6.1"; src = fetchurl { url = "http://unbound.net/downloads/${name}.tar.gz"; - sha256 = "1dzsxyp34ianp08wk4vf13qzl5ss5rr9v1p8zr1aggfywrsbhzbb"; + sha256 = "000lylg5qgriaxh6k78l2inb905qshx01kxgmqj89zn08gvn7ps2"; }; outputs = [ "out" "lib" "man" ]; # "dev" would only split ~20 kB diff --git a/pkgs/tools/package-management/nix/default.nix b/pkgs/tools/package-management/nix/default.nix index 49b23fec4ecf..94cc7b9d2c48 100644 --- a/pkgs/tools/package-management/nix/default.nix +++ b/pkgs/tools/package-management/nix/default.nix @@ -103,10 +103,10 @@ in rec { nix = nixStable; nixStable = common rec { - name = "nix-1.11.6"; + name = "nix-1.11.7"; src = fetchurl { url = "http://nixos.org/releases/nix/${name}/${name}.tar.xz"; - sha256 = "e729d55a9276756108a56bc1cbe2e182ee2e4be2b59b1c77d5f0e3edd879b2a3"; + sha256 = "1a6fd2a23f5fde614c3937c0d51eff46d28dd30d245a66d34d59b15fd9bb8f2d"; }; }; diff --git a/pkgs/tools/security/ksshaskpass/default.nix b/pkgs/tools/security/ksshaskpass/default.nix deleted file mode 100644 index a668f57c5bbe..000000000000 --- a/pkgs/tools/security/ksshaskpass/default.nix +++ /dev/null @@ -1,27 +0,0 @@ -{ stdenv, fetchurl, kdelibs -, automoc4, cmake, perl, pkgconfig -}: - -stdenv.mkDerivation { - name = "ksshaskpass-0.5.3"; - - src = fetchurl { - url = http://kde-apps.org/CONTENT/content-files/50971-ksshaskpass-0.5.3.tar.gz; - sha256 = "0911i8jr0nzqah8xidb8wba55a2skaidj3klv3cw6bm5fjx7x953"; - }; - - nativeBuildInputs = [ automoc4 cmake perl pkgconfig ]; - - buildInputs = [ kdelibs ]; - - patchPhase = '' - sed -i 's@/usr/bin/@@' src/ksshaskpass.desktop - ''; - - meta = { - homepage = http://kde-apps.org/content/show.php?content=50971; - description = "A KDE 4 version of ssh-askpass with KWallet support"; - license = stdenv.lib.licenses.gpl2Plus; - inherit (kdelibs.meta) platforms; - }; -} diff --git a/pkgs/tools/security/pass/default.nix b/pkgs/tools/security/pass/default.nix index b0137619f0c1..62f1a3a05dd0 100644 --- a/pkgs/tools/security/pass/default.nix +++ b/pkgs/tools/security/pass/default.nix @@ -1,54 +1,31 @@ -{ stdenv, fetchurl -, coreutils, gnused, getopt, pwgen, git, tree, gnupg, which, procps +{ stdenv, lib, fetchurl +, coreutils, gnused, getopt, git, tree, gnupg, which, procps, qrencode , makeWrapper , xclip ? null, xdotool ? null, dmenu ? null , x11Support ? !stdenv.isDarwin }: +with lib; + assert x11Support -> xclip != null && xdotool != null && dmenu != null; stdenv.mkDerivation rec { - version = "1.6.5"; + version = "1.7"; name = "password-store-${version}"; src = fetchurl { url = "http://git.zx2c4.com/password-store/snapshot/${name}.tar.xz"; - sha256 = "05bk3lrp5jwg0v338lvylp7glpliydzz4jf5pjr6k3kagrv3jyik"; + sha256 = "002mw7j0m33bw483rllzhcf41wp3ixka8yma6kqrfaj57jyw66hn"; }; - patches = - [ ./program-name.patch - ./set-correct-program-name-for-sleep.patch - ] ++ stdenv.lib.optional stdenv.isDarwin ./no-darwin-getopt.patch; - - buildInputs = [ makeWrapper ]; - - meta = with stdenv.lib; { - description = "Stores, retrieves, generates, and synchronizes passwords securely"; - homepage = http://www.passwordstore.org/; - license = licenses.gpl2Plus; - maintainers = with maintainers; [ lovek323 the-kenny ]; - platforms = platforms.unix; - - longDescription = '' - pass is a very simple password store that keeps passwords inside gpg2 - encrypted files inside a simple directory tree residing at - ~/.password-store. The pass utility provides a series of commands for - manipulating the password store, allowing the user to add, remove, edit, - synchronize, generate, and manipulate passwords. - ''; - }; + patches = stdenv.lib.optional stdenv.isDarwin ./no-darwin-getopt.patch; - preInstall = '' - mkdir -p "$out/share/bash-completion/completions" - mkdir -p "$out/share/zsh/site-functions" - mkdir -p "$out/share/fish/vendor_completions.d" - ''; + nativeBuildInputs = [ makeWrapper ]; - installFlags = [ "PREFIX=$(out)" ]; + installFlags = [ "PREFIX=$(out)" "WITH_ALLCOMP=yes" ]; postInstall = '' # Install Emacs Mode. NOTE: We can't install the necessary @@ -56,10 +33,8 @@ stdenv.mkDerivation rec { # himself. mkdir -p "$out/share/emacs/site-lisp" cp "contrib/emacs/password-store.el" "$out/share/emacs/site-lisp/" - - ${if x11Support then '' - cp "contrib/dmenu/passmenu" "$out/bin/" - '' else ""} + '' + optionalString x11Support '' + cp "contrib/dmenu/passmenu" "$out/bin/" ''; wrapperPath = with stdenv.lib; makeBinPath ([ @@ -68,16 +43,16 @@ stdenv.mkDerivation rec { git gnupg gnused - pwgen tree which + qrencode ] ++ stdenv.lib.optional stdenv.isLinux procps ++ ifEnable x11Support [ dmenu xclip xdotool ]); postFixup = '' # Fix program name in --help substituteInPlace $out/bin/pass \ - --replace "\$program" "pass" + --replace 'PROGRAM="''${0##*/}"' "PROGRAM=pass" # Ensure all dependencies are in PATH wrapProgram $out/bin/pass \ @@ -88,4 +63,20 @@ stdenv.mkDerivation rec { wrapProgram $out/bin/passmenu \ --prefix PATH : "$out/bin:${wrapperPath}" ''; + + meta = with stdenv.lib; { + description = "Stores, retrieves, generates, and synchronizes passwords securely"; + homepage = http://www.passwordstore.org/; + license = licenses.gpl2Plus; + maintainers = with maintainers; [ lovek323 the-kenny fpletz ]; + platforms = platforms.unix; + + longDescription = '' + pass is a very simple password store that keeps passwords inside gpg2 + encrypted files inside a simple directory tree residing at + ~/.password-store. The pass utility provides a series of commands for + manipulating the password store, allowing the user to add, remove, edit, + synchronize, generate, and manipulate passwords. + ''; + }; } diff --git a/pkgs/tools/security/pass/program-name.patch b/pkgs/tools/security/pass/program-name.patch deleted file mode 100644 index db01942f638d..000000000000 --- a/pkgs/tools/security/pass/program-name.patch +++ /dev/null @@ -1,13 +0,0 @@ -diff --git a/src/password-store.sh b/src/password-store.sh -index 6313384..6607a98 100755 ---- a/src/password-store.sh -+++ b/src/password-store.sh -@@ -573,7 +573,7 @@ cmd_git() { - # END subcommand functions - # - --PROGRAM="${0##*/}" -+PROGRAM="pass" - COMMAND="$1" - - case "$1" in diff --git a/pkgs/tools/security/pass/set-correct-program-name-for-sleep.patch b/pkgs/tools/security/pass/set-correct-program-name-for-sleep.patch deleted file mode 100644 index f00307307eb5..000000000000 --- a/pkgs/tools/security/pass/set-correct-program-name-for-sleep.patch +++ /dev/null @@ -1,33 +0,0 @@ -From 6ad29ae97263060c9ec95856e0d8ab18409108c0 Mon Sep 17 00:00:00 2001 -From: Franz Pletz <fpletz@fnordicwalking.de> -Date: Sat, 3 Sep 2016 05:45:36 +0200 -Subject: [PATCH] Set correct program name for sleep - ---- - src/password-store.sh | 7 +++++-- - 1 file changed, 5 insertions(+), 2 deletions(-) - -diff --git a/src/password-store.sh b/src/password-store.sh -index 63be840..ca47df3 100755 ---- a/src/password-store.sh -+++ b/src/password-store.sh -@@ -133,11 +133,14 @@ clip() { - # variable. Specifically, it cannot store nulls nor (non-trivally) store - # trailing new lines. - local sleep_argv0="password store sleep on display $DISPLAY" -- pkill -f "^$sleep_argv0" 2>/dev/null && sleep 0.5 -+ pkill -P $(pgrep -f "^$sleep_argv0") 2>/dev/null && sleep 0.5 - local before="$(xclip -o -selection "$X_SELECTION" 2>/dev/null | base64)" - echo -n "$1" | xclip -selection "$X_SELECTION" || die "Error: Could not copy data to the clipboard" - ( -- ( exec -a "$sleep_argv0" sleep "$CLIP_TIME" ) -+ # Execute sleep as a child process of bash because it may be -+ # a symlink to a single binary version of coreutils or busybox -+ # which depends on argv0 correctly set to "sleep" -+ ( exec -a "$sleep_argv0" bash <(echo sleep "$CLIP_TIME") ) - local now="$(xclip -o -selection "$X_SELECTION" | base64)" - [[ $now != $(echo -n "$1" | base64) ]] && before="$now" - --- -2.9.3 - diff --git a/pkgs/tools/security/polkit-kde-agent/default.nix b/pkgs/tools/security/polkit-kde-agent/default.nix deleted file mode 100644 index 6b4bcf7ad637..000000000000 --- a/pkgs/tools/security/polkit-kde-agent/default.nix +++ /dev/null @@ -1,22 +0,0 @@ -{ stdenv, fetchurl, automoc4, cmake, gettext, perl, pkgconfig -, kdelibs, polkit_qt4 }: - -stdenv.mkDerivation rec { - name = "polkit-kde-agent-1-0.99.0"; - - src = fetchurl { - url = "mirror://kde/stable/apps/KDE4.x/admin/${name}.tar.bz2"; - sha256 = "0rxlq6x0vhvha8i6w109zpzzacp4imins55v4p4fq7a3k0kgywg3"; - }; - - buildInputs = [ kdelibs polkit_qt4 ]; - - nativeBuildInputs = [ automoc4 cmake gettext perl pkgconfig ]; - - patchPhase = "sed -e s/KDE4_AUTOSTART/AUTOSTART/ -i CMakeLists.txt"; - - meta = { - platforms = stdenv.lib.platforms.linux; - description = "PolicyKit authentication agent for KDE"; - }; -} diff --git a/pkgs/tools/security/tor/torbrowser.nix b/pkgs/tools/security/tor/torbrowser.nix index 490864ee2d59..fc77628a3c60 100644 --- a/pkgs/tools/security/tor/torbrowser.nix +++ b/pkgs/tools/security/tor/torbrowser.nix @@ -1,7 +1,7 @@ { stdenv, fetchurl, makeDesktopItem , libXrender, libX11, libXext, libXt, alsaLib, dbus, dbus_glib, glib, gtk2 , atk, pango, freetype, fontconfig, gdk_pixbuf, cairo, zlib -, gstreamer, gst_plugins_base, gst_plugins_good, gst_ffmpeg, gmp, ffmpeg +, gstreamer, gst-plugins-base, gst-plugins-good, gst-ffmpeg, gmp, ffmpeg , libpulseaudio , mediaSupport ? false }: @@ -11,12 +11,12 @@ let stdenv.cc.cc zlib glib alsaLib dbus dbus_glib gtk2 atk pango freetype fontconfig gdk_pixbuf cairo libXrender libX11 libXext libXt ] ++ stdenv.lib.optionals mediaSupport [ - gstreamer gst_plugins_base gmp ffmpeg + gstreamer gst-plugins-base gmp ffmpeg libpulseaudio ]); # Ignored if !mediaSupport - gstPlugins = [ gstreamer gst_plugins_base gst_plugins_good gst_ffmpeg ]; + gstPlugins = [ gstreamer gst-plugins-base gst-plugins-good gst-ffmpeg ]; gstPluginsPath = stdenv.lib.concatMapStringsSep ":" (x: "${x}/lib/gstreamer-0.10") gstPlugins; diff --git a/pkgs/tools/system/smartmontools/default.nix b/pkgs/tools/system/smartmontools/default.nix index 1a9e2d3b5b9b..c3f05edd9adb 100644 --- a/pkgs/tools/system/smartmontools/default.nix +++ b/pkgs/tools/system/smartmontools/default.nix @@ -1,8 +1,20 @@ -{ stdenv, fetchurl, -IOKit ? null , ApplicationServices ? null }: +{ stdenv, fetchurl, IOKit ? null , ApplicationServices ? null }: + +let -stdenv.mkDerivation rec { version = "6.5"; + + dbrev = "4391"; + drivedbBranch = "RELEASE_${builtins.replaceStrings ["."] ["_"] version}_DRIVEDB"; + driverdb = fetchurl { + url = "http://sourceforge.net/p/smartmontools/code/${dbrev}/tree/branches/${drivedbBranch}/smartmontools/drivedb.h?format=raw"; + sha256 = "1da99m81wr0rjdhcz2xx0sbbrqxkxffja2kllg4srmhih7fps5p1"; + name = "smartmontools-drivedb.h"; + }; + +in + +stdenv.mkDerivation rec { name = "smartmontools-${version}"; src = fetchurl { @@ -13,6 +25,7 @@ stdenv.mkDerivation rec { buildInputs = [] ++ stdenv.lib.optionals stdenv.isDarwin [IOKit ApplicationServices]; patches = [ ./smartmontools.patch ]; + postPatch = "cp -v ${driverdb} drivedb.h"; meta = with stdenv.lib; { description = "Tools for monitoring the health of hard drives"; diff --git a/pkgs/tools/text/kdiff3/default.nix b/pkgs/tools/text/kdiff3/default.nix index 664fb87b5205..b53d619d837c 100644 --- a/pkgs/tools/text/kdiff3/default.nix +++ b/pkgs/tools/text/kdiff3/default.nix @@ -1,22 +1,37 @@ -{ stdenv, fetchurl, automoc4, cmake, perl, pkgconfig -, kdelibs, gettext +{ + kdeDerivation, kdeWrapper, lib, fetchgit, + extra-cmake-modules, kdoctools, kconfig, kinit, kparts }: -stdenv.mkDerivation rec { - name = "kdiff3-0.9.98"; - src = fetchurl { - url = "mirror://sourceforge/kdiff3/${name}.tar.gz"; - sha256 = "0s6n1whkf5ck2r8782a9l8b736cj2p05and1vjjh7d02pax1lb40"; - }; +let + rev = "468652ce70b1214842cef0a021c81d056ec6aa01"; + + unwrapped = kdeDerivation rec { + name = "kdiff3-${version}"; + version = "1.7.0-${lib.strings.substring 0 7 rev}"; + + src = fetchgit { + url = "https://gitlab.com/tfischer/kdiff3"; + sha256 = "126xl7jbb26v2970ba1rw1d6clhd14p1f2avcwvj8wzqmniq5y5m"; + inherit rev; + }; - buildInputs = [ kdelibs ]; - nativeBuildInputs = [ automoc4 cmake gettext perl pkgconfig ]; + preConfigure = "cd kdiff3"; - meta = { - homepage = http://kdiff3.sourceforge.net/; - license = stdenv.lib.licenses.gpl2Plus; - description = "Compares and merges 2 or 3 files or directories"; - maintainers = with stdenv.lib.maintainers; [viric urkud]; - platforms = with stdenv.lib.platforms; linux; + nativeBuildInputs = [ extra-cmake-modules kdoctools ]; + + propagatedBuildInputs = [ kconfig kinit kparts ]; + + meta = with lib; { + homepage = http://kdiff3.sourceforge.net/; + license = licenses.gpl2Plus; + description = "Compares and merges 2 or 3 files or directories"; + maintainers = with maintainers; [ viric urkud peterhoeg ]; + platforms = with platforms; linux; + }; }; + +in kdeWrapper { + inherit unwrapped; + targets = [ "bin/kdiff3" ]; } diff --git a/pkgs/tools/text/kdiff3/kde5.nix b/pkgs/tools/text/kdiff3/kde5.nix deleted file mode 100644 index f1ae958ed637..000000000000 --- a/pkgs/tools/text/kdiff3/kde5.nix +++ /dev/null @@ -1,37 +0,0 @@ -{ - kdeDerivation, kdeWrapper, lib, fetchgit, - ecm, kdoctools, kconfig, kinit, kparts -}: - -let - rev = "468652ce70b1214842cef0a021c81d056ec6aa01"; - - unwrapped = kdeDerivation rec { - name = "kdiff3-${version}"; - version = "1.7.0-${lib.strings.substring 0 7 rev}"; - - src = fetchgit { - url = "https://gitlab.com/tfischer/kdiff3"; - sha256 = "126xl7jbb26v2970ba1rw1d6clhd14p1f2avcwvj8wzqmniq5y5m"; - inherit rev; - }; - - preConfigure = "cd kdiff3"; - - nativeBuildInputs = [ ecm kdoctools ]; - - propagatedBuildInputs = [ kconfig kinit kparts ]; - - meta = with lib; { - homepage = http://kdiff3.sourceforge.net/; - license = licenses.gpl2Plus; - description = "Compares and merges 2 or 3 files or directories"; - maintainers = with maintainers; [ viric urkud peterhoeg ]; - platforms = with platforms; linux; - }; - }; - -in kdeWrapper { - inherit unwrapped; - targets = [ "bin/kdiff3" ]; -} diff --git a/pkgs/tools/text/xml/rnv/default.nix b/pkgs/tools/text/xml/rnv/default.nix new file mode 100644 index 000000000000..fef8b9db2ffd --- /dev/null +++ b/pkgs/tools/text/xml/rnv/default.nix @@ -0,0 +1,20 @@ +{ stdenv, fetchurl, expat }: + +stdenv.mkDerivation rec { + name = "rnv-${version}"; + version = "1.7.11"; + + src = fetchurl { + url = "mirror://sourceforge/rnv/rnv-${version}.tar.xz"; + sha256 = "1rlxrkkkp8b5j6lyvnd9z1d85grmwwmdggkxq6yl226nwkqj1faa"; + }; + + buildInputs = [ expat ]; + + meta = with stdenv.lib; { + description = "Relax NG Compact Syntax validator"; + homepage = http://www.davidashen.net/rnv.html; + license = licenses.bsd3; + platforms = platforms.all; + }; +} diff --git a/pkgs/tools/virtualization/awless/default.nix b/pkgs/tools/virtualization/awless/default.nix index afc45a2d5a75..549c830e8871 100644 --- a/pkgs/tools/virtualization/awless/default.nix +++ b/pkgs/tools/virtualization/awless/default.nix @@ -2,22 +2,21 @@ buildGoPackage rec { name = "awless-${version}"; - version = "0.0.13"; - rev = "${version}"; + version = "0.0.14"; goPackagePath = "github.com/wallix/awless"; src = fetchFromGitHub { - inherit rev; - owner = "wallix"; - repo = "awless"; - sha256 = "045n4r2mk40pjggsfcjlxni6q4arybs9x9raghqb9n8dyfg9v5kv"; + owner = "wallix"; + repo = "awless"; + rev = version; + sha256 = "1syxw8d9y1b4bdb1arsx05m5mxnd0dqp3nj7fk5j1v7cnnbja3hj"; }; meta = with stdenv.lib; { homepage = https://github.com/wallix/awless/; description = "A Mighty CLI for AWS"; - platforms = platforms.linux ++ platforms.darwin; + platforms = with platforms; linux ++ darwin; license = licenses.asl20; maintainers = with maintainers; [ pradeepchhetri ]; }; diff --git a/pkgs/top-level/aliases.nix b/pkgs/top-level/aliases.nix index 57242e2a7422..318415b7512f 100644 --- a/pkgs/top-level/aliases.nix +++ b/pkgs/top-level/aliases.nix @@ -17,7 +17,7 @@ in ### Deprecated aliases - for backward compatibility doNotDisplayTwice rec { - accounts-qt = qt5.accounts-qt; # added 2015-12-19 + accounts-qt = libsForQt5.accounts-qt; # added 2015-12-19 adobeReader = adobe-reader; aircrackng = aircrack-ng; # added 2016-01-14 arduino_core = arduino-core; # added 2015-02-04 @@ -38,6 +38,7 @@ doNotDisplayTwice rec { cups_filters = cups-filters; # added 2016-08 cv = progress; # added 2015-09-06 debian_devscripts = debian-devscripts; # added 2016-03-23 + digikam5 = digikam; # added 2017-02-18 dwarf_fortress = dwarf-fortress; # added 2016-01-23 dwbWrapper = dwb; # added 2015-01 enblendenfuse = enblend-enfuse; # 2015-09-30 @@ -50,7 +51,13 @@ doNotDisplayTwice rec { gettextWithExpat = gettext; # 2016-02-19 git-hub = gitAndTools.git-hub; # added 2016-04-29 googleAuthenticator = google-authenticator; # added 2016-10-16 - grantlee5 = qt5.grantlee; # added 2015-12-19 + grantlee5 = libsForQt5.grantlee; # added 2015-12-19 + gst_ffmpeg = gst-ffmpeg; # added 2017-02 + gst_plugins_base = gst-plugins-base; # added 2017-02 + gst_plugins_good = gst-plugins-good; # added 2017-02 + gst_plugins_bad = gst-plugins-bad; # added 2017-02 + gst_plugins_ugly = gst-plugins-ugly; # added 2017-02 + gst_python = gst-python; # added 2017-02 gupnptools = gupnp-tools; # added 2015-12-19 gnustep-make = gnustep.make; # added 2016-7-6 htmlTidy = html-tidy; # added 2014-12-06 @@ -58,11 +65,13 @@ doNotDisplayTwice rec { inotifyTools = inotify-tools; joseki = apache-jena-fuseki; # added 2016-02-28 jquery_ui = jquery-ui; # added 2014-09-07 + kdiff3-qt5 = kdiff3; # added 2017-02-18 keepassx2-http = keepassx-reboot; # added 2016-10-17 keepassx-reboot = keepassx-community; # added 2017-02-01 keybase-go = keybase; # added 2016-08-24 + krename-qt5 = krename; # added 2017-02-18 letsencrypt = certbot; # added 2016-05-16 - libdbusmenu_qt5 = qt5.libdbusmenu; # added 2015-12-19 + libdbusmenu_qt5 = libsForQt5.libdbusmenu; # added 2015-12-19 libcap_manpages = libcap.doc; # added 2016-04-29 libcap_pam = if stdenv.isLinux then libcap.pam else null; # added 2016-04-29 libcap_progs = libcap.out; # added 2016-04-29 @@ -74,7 +83,7 @@ doNotDisplayTwice rec { manpages = man-pages; # added 2015-12-06 man_db = man-db; # added 2016-05 midoriWrapper = midori; # added 2015-01 - mlt-qt5 = qt5.mlt; # added 2015-12-19 + mlt-qt5 = libsForQt5.mlt; # added 2015-12-19 module_init_tools = kmod; # added 2016-04-22 mssys = ms-sys; # added 2015-12-13 multipath_tools = multipath-tools; # added 2016-01-21 @@ -87,13 +96,14 @@ doNotDisplayTwice rec { owncloudclient = owncloud-client; # added 2016-08 pidgin-with-plugins = pidgin; # added 2016-06 pidginlatexSF = pidginlatex; # added 2014-11-02 - poppler_qt5 = qt5.poppler; # added 2015-12-19 - qca-qt5 = qt5.qca-qt5; # added 2015-12-19 + poppler_qt5 = libsForQt5.poppler; # added 2015-12-19 + qca-qt5 = libsForQt5.qca-qt5; # added 2015-12-19 QmidiNet = qmidinet; # added 2016-05-22 + qt_gstreamer = qt-gstreamer; # added 2017-02 + qt_gstreamer1 = qt-gstreamer1; # added 2017-02 quake3game = ioquake3; # added 2016-01-14 - qwt6 = qt5.qwt; # added 2015-12-19 + qwt6 = libsForQt5.qwt; # added 2015-12-19 rdiff_backup = rdiff-backup; # added 2014-11-23 - rekonqWrapper = rekonq; # added 2015-01 rssglx = rss-glx; #added 2015-03-25 rubygems = throw "deprecated 2016-03-02: rubygems is now bundled with ruby"; rustUnstable = rustNightly; # added 2016-11-29 @@ -103,12 +113,13 @@ doNotDisplayTwice rec { saneBackendsGit = sane-backends-git; # added 2016-01-02 saneFrontends = sane-frontends; # added 2016-01-02 scim = sc-im; # added 2016-01-22 + skrooge2 = skrooge; # added 2017-02-18 spaceOrbit = space-orbit; # addewd 2016-05-23 speedtest_cli = speedtest-cli; # added 2015-02-17 sqliteInteractive = sqlite-interactive; # added 2014-12-06 sshfsFuse = sshfs-fuse; # added 2016-09 system_config_printer = system-config-printer; # added 2016-01-03 - telepathy_qt5 = qt5.telepathy; # added 2015-12-19 + telepathy_qt5 = libsForQt5.telepathy; # added 2015-12-19 tftp_hpa = tftp-hpa; # added 2015-04-03 ucsFonts = ucs-fonts; # added 2016-07-15 usb_modeswitch = usb-modeswitch; # added 2016-05-10 diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index 875f4f00effd..b477a9df8320 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -269,6 +269,12 @@ with pkgs; inherit kernel rootModules allowMissing; }; + kdeDerivation = import ../build-support/kde/derivation.nix { inherit stdenv lib; }; + + kdeWrapper = import ../build-support/kde/wrapper.nix { + inherit stdenv lib makeWrapper buildEnv; + }; + nixBufferBuilders = import ../build-support/emacs/buffer.nix { inherit (pkgs) lib writeText; inherit (emacsPackagesNg) inherit-local; }; pathsFromGraph = ../build-support/kernel/paths-from-graph.pl; @@ -359,6 +365,8 @@ with pkgs; aescrypt = callPackage ../tools/misc/aescrypt { }; + afio = callPackage ../tools/archivers/afio { }; + afl = callPackage ../tools/security/afl { }; afpfs-ng = callPackage ../tools/filesystems/afpfs-ng/default.nix { }; @@ -379,7 +387,7 @@ with pkgs; aj-snapshot = callPackage ../applications/audio/aj-snapshot { }; - albert = qt5.callPackage ../applications/misc/albert {}; + albert = libsForQt5.callPackage ../applications/misc/albert {}; amazon-glacier-cmd-interface = callPackage ../tools/backup/amazon-glacier-cmd-interface { }; @@ -418,7 +426,7 @@ with pkgs; withGui = false; }; - apitrace = qt55.callPackage ../applications/graphics/apitrace {}; + apitrace = libsForQt55.callPackage ../applications/graphics/apitrace {}; argus = callPackage ../tools/networking/argus {}; @@ -744,7 +752,7 @@ with pkgs; clib = callPackage ../tools/package-management/clib { }; - colord-kde = qt5.callPackage ../tools/misc/colord-kde/0.5.nix {}; + colord-kde = libsForQt5.callPackage ../tools/misc/colord-kde {}; consul = callPackage ../servers/consul { }; @@ -922,6 +930,8 @@ with pkgs; hexio = callPackage ../development/tools/hexio { }; + hr = callPackage ../applications/misc/hr { }; + interlock = callPackage ../servers/interlock {}; kapacitor = callPackage ../servers/monitoring/kapacitor { }; @@ -1090,7 +1100,7 @@ with pkgs; davix = callPackage ../tools/networking/davix { }; - cantata = qt5.callPackage ../applications/audio/cantata { + cantata = libsForQt5.callPackage ../applications/audio/cantata { ffmpeg = ffmpeg_2; }; @@ -1147,7 +1157,7 @@ with pkgs; clementine = callPackage ../applications/audio/clementine { boost = boost155; - gst_plugins = [ gst_plugins_base gst_plugins_good gst_plugins_ugly gst_ffmpeg ]; + gst_plugins = [ gst-plugins-base gst-plugins-good gst-plugins-ugly gst-ffmpeg ]; }; clementineFree = clementine.free; @@ -1156,7 +1166,7 @@ with pkgs; citrix_receiver = callPackage ../applications/networking/remote/citrix-receiver { }; - cmst = qt5.callPackage ../tools/networking/cmst { }; + cmst = libsForQt5.callPackage ../tools/networking/cmst { }; colord = callPackage ../tools/misc/colord { }; @@ -1287,7 +1297,7 @@ with pkgs; cloud-utils = callPackage ../tools/misc/cloud-utils { }; - ckb = qt5.callPackage ../tools/misc/ckb { }; + ckb = libsForQt5.callPackage ../tools/misc/ckb { }; compass = callPackage ../development/tools/compass { }; @@ -1295,7 +1305,7 @@ with pkgs; convoy = callPackage ../tools/filesystems/convoy { }; - cool-retro-term = qt55.callPackage ../applications/misc/cool-retro-term { }; + cool-retro-term = libsForQt55.callPackage ../applications/misc/cool-retro-term { }; coreutils = callPackage ../tools/misc/coreutils { aclSupport = stdenv.isLinux; @@ -1432,6 +1442,8 @@ with pkgs; dnsmasq = callPackage ../tools/networking/dnsmasq { }; + dnsperf = callPackage ../tools/networking/dnsperf { }; + dnstop = callPackage ../tools/networking/dnstop { }; dhcp = callPackage ../tools/networking/dhcp { }; @@ -2007,6 +2019,9 @@ with pkgs; grails = callPackage ../development/web/grails { jdk = null; }; graylog = callPackage ../tools/misc/graylog { }; + graylogPlugins = recurseIntoAttrs ( + callPackage ../tools/misc/graylog/plugins.nix { } + ); gprof2dot = callPackage ../development/tools/profiling/gprof2dot { # Using pypy provides significant performance improvements (~2x) @@ -2134,6 +2149,8 @@ with pkgs; pgf_graphics = callPackage ../tools/graphics/pgf { }; + pgjwt = callPackage ../servers/sql/postgresql/pgjwt {}; + pigz = callPackage ../tools/compression/pigz { }; pixz = callPackage ../tools/compression/pixz { }; @@ -2191,7 +2208,7 @@ with pkgs; hecate = callPackage ../applications/editors/hecate { }; - heaptrack = callPackage ../development/tools/profiling/heaptrack {}; + heaptrack = libsForQt5.callPackage ../development/tools/profiling/heaptrack {}; heimdall = callPackage ../tools/misc/heimdall { }; @@ -2241,11 +2258,11 @@ with pkgs; i2pd = callPackage ../tools/networking/i2pd {}; - i-score = qt5.callPackage ../applications/audio/i-score { }; + i-score = libsForQt5.callPackage ../applications/audio/i-score { }; iasl = callPackage ../development/compilers/iasl { }; - iannix = qt5.callPackage ../applications/audio/iannix { }; + iannix = libsForQt5.callPackage ../applications/audio/iannix { }; icecast = callPackage ../servers/icecast { }; @@ -2444,15 +2461,15 @@ with pkgs; kpcli = callPackage ../tools/security/kpcli { }; - krename-qt5 = qt5.callPackage ../applications/misc/krename/kde5.nix { }; + krename = libsForQt5.callPackage ../applications/misc/krename { }; - kronometer = qt5.callPackage ../tools/misc/kronometer { }; + kronometer = libsForQt5.callPackage ../tools/misc/kronometer { }; - kdiff3-qt5 = qt5.callPackage ../tools/text/kdiff3/kde5.nix { }; + kdiff3 = libsForQt5.callPackage ../tools/text/kdiff3 { }; - peruse = qt5.callPackage ../tools/misc/peruse { }; + peruse = libsForQt5.callPackage ../tools/misc/peruse { }; - kst = qt5.callPackage ../tools/graphics/kst { gsl = gsl_1; }; + kst = libsForQt5.callPackage ../tools/graphics/kst { gsl = gsl_1; }; kytea = callPackage ../tools/text/kytea { }; @@ -2851,7 +2868,7 @@ with pkgs; mfoc = callPackage ../tools/security/mfoc { }; - mgba = qt5.callPackage ../misc/emulators/mgba { }; + mgba = libsForQt5.callPackage ../misc/emulators/mgba { }; mimeo = callPackage ../tools/misc/mimeo { }; @@ -2899,6 +2916,8 @@ with pkgs; molly-guard = callPackage ../os-specific/linux/molly-guard { }; + moneyplex = callPackage ../applications/office/moneyplex { }; + monit = callPackage ../tools/system/monit { }; moreutils = callPackage ../tools/misc/moreutils { @@ -3396,7 +3415,7 @@ with pkgs; inherit qt4; }; - pinentry_qt5 = qt5.callPackage ../tools/security/pinentry/qt5.nix { + pinentry_qt5 = libsForQt5.callPackage ../tools/security/pinentry/qt5.nix { libcap = if stdenv.isDarwin then null else libcap; }; @@ -3501,8 +3520,6 @@ with pkgs; ps3netsrv = callPackage ../servers/ps3netsrv { }; - psi = callPackage ../applications/networking/instant-messengers/psi { }; - psmisc = callPackage ../os-specific/linux/psmisc { }; pssh = callPackage ../tools/networking/pssh { }; @@ -3547,10 +3564,10 @@ with pkgs; qalculate-gtk = callPackage ../applications/science/math/qalculate-gtk { }; - qastools = qt5.callPackage ../tools/audio/qastools { }; + qastools = libsForQt5.callPackage ../tools/audio/qastools { }; - qesteidutil = qt5.callPackage ../tools/security/qesteidutil { } ; - qdigidoc = qt5.callPackage ../tools/security/qdigidoc { } ; + qesteidutil = libsForQt5.callPackage ../tools/security/qesteidutil { } ; + qdigidoc = libsForQt5.callPackage ../tools/security/qdigidoc { } ; esteidfirefoxplugin = callPackage ../applications/networking/browsers/mozilla-plugins/esteidfirefoxplugin { }; @@ -3679,6 +3696,8 @@ with pkgs; rng_tools = callPackage ../tools/security/rng-tools { }; + rnv = callPackage ../tools/text/xml/rnv { }; + rq = callPackage ../development/tools/rq { v8 = v8_static; }; @@ -3765,7 +3784,9 @@ with pkgs; quazip = quazip_qt4; }; - quazip_qt4 = self.qt5.quazip.override { qt = qt4; qmakeHook = qmake4Hook; }; + quazip_qt4 = libsForQt5.quazip.override { + qtbase = qt4; qmakeHook = qmake4Hook; + }; scrot = callPackage ../tools/graphics/scrot { }; @@ -3807,7 +3828,7 @@ with pkgs; siege = callPackage ../tools/networking/siege {}; - sigil = qt55.callPackage ../applications/editors/sigil { }; + sigil = libsForQt55.callPackage ../applications/editors/sigil { }; # aka., gpg-tools signing-party = callPackage ../tools/security/signing-party { }; @@ -3915,7 +3936,7 @@ with pkgs; su-exec = callPackage ../tools/security/su-exec {}; - subsurface = qt5.callPackage ../applications/misc/subsurface { }; + subsurface = libsForQt5.callPackage ../applications/misc/subsurface { }; sudo = callPackage ../tools/security/sudo { }; @@ -4047,7 +4068,7 @@ with pkgs; thin-provisioning-tools = callPackage ../tools/misc/thin-provisioning-tools { }; - tiled = qt5.callPackage ../applications/editors/tiled { }; + tiled = libsForQt5.callPackage ../applications/editors/tiled { }; timemachine = callPackage ../applications/audio/timemachine { }; @@ -4361,9 +4382,7 @@ with pkgs; uhttpmock = callPackage ../development/libraries/uhttpmock { }; - uim = callPackage ../tools/inputmethods/uim { - inherit (pkgs.kde4) kdelibs; - }; + uim = kde4.callPackage ../tools/inputmethods/uim { }; uhub = callPackage ../servers/uhub { }; @@ -4733,6 +4752,7 @@ with pkgs; clang = llvmPackages.clang; + clang_40 = lowPrio llvmPackages_40.clang; clang_39 = llvmPackages_39.clang; clang_38 = llvmPackages_38.clang; clang_37 = llvmPackages_37.clang; @@ -5287,10 +5307,13 @@ with pkgs; lizardfs = callPackage ../tools/filesystems/lizardfs { }; + lld = lowPrio llvmPackages_40.lld; + lldb = llvmPackages.lldb; llvm = llvmPackages.llvm; + llvm_40 = lowPrio llvmPackages_40.llvm; llvm_39 = llvmPackages_39.llvm; llvm_38 = llvmPackages_38.llvm; llvm_37 = llvmPackages_37.llvm; @@ -5328,6 +5351,10 @@ with pkgs; inherit (stdenvAdapters) overrideCC; }; + llvmPackages_40 = callPackage ../development/compilers/llvm/4.0 { + inherit (stdenvAdapters) overrideCC; + }; + manticore = callPackage ../development/compilers/manticore { }; mentorToolchains = recurseIntoAttrs ( @@ -6265,7 +6292,7 @@ with pkgs; cmakeWithGui = cmakeCurses.override { useQt4 = true; }; # Does not actually depend on Qt 5 - extra-cmake-modules = qt5.ecmNoHooks; + inherit (kdeFrameworks) extra-cmake-modules kapidox kdoctools; coccinelle = callPackage ../development/tools/misc/coccinelle { ocamlPackages = ocamlPackages_4_01_0; @@ -6538,6 +6565,8 @@ with pkgs; lttv = callPackage ../development/tools/misc/lttv { }; + massif-visualizer = kde4.callPackage ../development/tools/analysis/massif-visualizer { }; + maven = maven3; maven3 = callPackage ../development/tools/build-managers/apache-maven { }; @@ -6642,7 +6671,7 @@ with pkgs; premake = premake4; - qtcreator = qt5.callPackage ../development/qtcreator { }; + qtcreator = libsForQt5.callPackage ../development/qtcreator { }; r10k = callPackage ../tools/system/r10k { }; @@ -6706,7 +6735,12 @@ with pkgs; shards = callPackage ../development/tools/build-managers/shards { }; - shellcheck = self.haskellPackages.ShellCheck; + shellcheck = haskell.lib.overrideCabal haskellPackages.ShellCheck (drv: { + isLibrary = false; + enableSharedExecutables = false; + doHaddock = false; + postFixup = "rm -rf $out/lib $out/nix-support $out/share/doc"; + }); shncpd = callPackage ../tools/networking/shncpd { }; @@ -7492,41 +7526,40 @@ with pkgs; }); gst_all = { - inherit (pkgs) gstreamer gnonlin gst_python qt_gstreamer; - gstPluginsBase = pkgs.gst_plugins_base; - gstPluginsBad = pkgs.gst_plugins_bad; - gstPluginsGood = pkgs.gst_plugins_good; - gstPluginsUgly = pkgs.gst_plugins_ugly; - gstFfmpeg = pkgs.gst_ffmpeg; + inherit (pkgs) gstreamer gnonlin gst-python qt-gstreamer; + gstPluginsBase = pkgs.gst-plugins-base; + gstPluginsBad = pkgs.gst-plugins-bad; + gstPluginsGood = pkgs.gst-plugins-good; + gstPluginsUgly = pkgs.gst-plugins-ugly; + gstFfmpeg = pkgs.gst-ffmpeg; # aliases with the dashed naming, same as in gst_all_1 - gst-plugins-base = pkgs.gst_plugins_base; - gst-plugins-bad = pkgs.gst_plugins_bad; - gst-plugins-good = pkgs.gst_plugins_good; - gst-plugins-ugly = pkgs.gst_plugins_ugly; - gst-ffmpeg = pkgs.gst_ffmpeg; - gst-python = pkgs.gst_python; + gst-plugins-base = pkgs.gst-plugins-base; + gst-plugins-bad = pkgs.gst-plugins-bad; + gst-plugins-good = pkgs.gst-plugins-good; + gst-plugins-ugly = pkgs.gst-plugins-ugly; + gst-ffmpeg = pkgs.gst-ffmpeg; }; gstreamer = callPackage ../development/libraries/gstreamer/legacy/gstreamer { bison = bison2; }; - gst_plugins_base = callPackage ../development/libraries/gstreamer/legacy/gst-plugins-base { + gst-plugins-base = callPackage ../development/libraries/gstreamer/legacy/gst-plugins-base { inherit (darwin.apple_sdk.frameworks) ApplicationServices; }; - gst_plugins_good = callPackage ../development/libraries/gstreamer/legacy/gst-plugins-good {}; + gst-plugins-good = callPackage ../development/libraries/gstreamer/legacy/gst-plugins-good {}; - gst_plugins_bad = callPackage ../development/libraries/gstreamer/legacy/gst-plugins-bad {}; + gst-plugins-bad = callPackage ../development/libraries/gstreamer/legacy/gst-plugins-bad {}; - gst_plugins_ugly = callPackage ../development/libraries/gstreamer/legacy/gst-plugins-ugly {}; + gst-plugins-ugly = callPackage ../development/libraries/gstreamer/legacy/gst-plugins-ugly {}; - gst_ffmpeg = callPackage ../development/libraries/gstreamer/legacy/gst-ffmpeg { + gst-ffmpeg = callPackage ../development/libraries/gstreamer/legacy/gst-ffmpeg { ffmpeg = ffmpeg_0; }; - gst_python = callPackage ../development/libraries/gstreamer/legacy/gst-python {}; + gst-python = callPackage ../development/libraries/gstreamer/legacy/gst-python {}; gstreamermm = callPackage ../development/libraries/gstreamer/legacy/gstreamermm { }; @@ -7538,9 +7571,9 @@ with pkgs; qt-mobility = callPackage ../development/libraries/qt-mobility {}; - qt_gstreamer = callPackage ../development/libraries/gstreamer/legacy/qt-gstreamer {}; + qt-gstreamer = callPackage ../development/libraries/gstreamer/legacy/qt-gstreamer {}; - qt_gstreamer1 = callPackage ../development/libraries/gstreamer/qt-gstreamer { boost = boost155;}; + qt-gstreamer1 = callPackage ../development/libraries/gstreamer/qt-gstreamer { boost = boost155;}; gnet = callPackage ../development/libraries/gnet { }; @@ -7819,6 +7852,18 @@ with pkgs; judy = callPackage ../development/libraries/judy { }; + kdeFrameworks = + let + mkFrameworks = import ../development/libraries/kde-frameworks; + attrs = { + inherit libsForQt5; + inherit kdeDerivation lib fetchurl; + }; + in + recurseIntoAttrs (makeOverridable mkFrameworks attrs); + + kdelibs4 = kdeApplications.kdelibs; + keybinder = callPackage ../development/libraries/keybinder { automake = automake111x; lua = lua5_1; @@ -8879,11 +8924,6 @@ with pkgs; mlt = callPackage ../development/libraries/mlt {}; - mlt-qt4 = callPackage ../development/libraries/mlt/qt-4.nix { - ffmpeg = ffmpeg_2; - qt = qt4; - }; - mono-addins = callPackage ../development/libraries/mono-addins { }; mono-zeroconf = callPackage ../development/libraries/mono-zeroconf { }; @@ -9206,6 +9246,7 @@ with pkgs; # 3.0.0-beta-2 is only introduced for tensorflow. remove this version when tensorflow is moved to 3.0. protobuf3_0_0b2 = lowPrio (callPackage ../development/libraries/protobuf/3.0.0-beta-2.nix { }); protobuf3_1 = callPackage ../development/libraries/protobuf/3.1.nix { }; + protobuf3_2 = callPackage ../development/libraries/protobuf/3.2.nix { }; protobuf2_6 = callPackage ../development/libraries/protobuf/2.6.nix { }; protobuf2_5 = callPackage ../development/libraries/protobuf/2.5.nix { }; @@ -9237,7 +9278,7 @@ with pkgs; libpng = libpng12; }; - qt4 = pkgs.kde4.qt4; + qt4 = qt48; qt48 = callPackage ../development/libraries/qt-4.x/4.8 { # GNOME dependencies are not used unless gtkStyle == true @@ -9265,33 +9306,79 @@ with pkgs; developerBuild = true; }); - qt55 = - let imported = import ../development/libraries/qt-5/5.5 { inherit pkgs; }; - # Libraries that cannot be built with newer versions of Qt 5 - qt55Only = self: with self; { - # Requires Qt Quick (deprecated in Qt 5.5, removed from Qt 5.6) - qmltermwidget = callPackage ../development/libraries/qmltermwidget { }; - }; - in recurseIntoAttrs (imported.override (super: self: qt5LibsFun self // qt55Only self)); + qt55 = recurseIntoAttrs (import ../development/libraries/qt-5/5.5 { + inherit newScope; + inherit stdenv fetchurl makeSetupHook makeWrapper; + bison = bison2; # error: too few arguments to function 'int yylex(... + cups = if stdenv.isLinux then cups else null; + harfbuzz = harfbuzz-icu; + mesa = mesa_noglu; + inherit perl; + inherit (gnome2) libgnomeui GConf gnome_vfs; + inherit (gst_all_1) gstreamer gst-plugins-base; + }); + + libsForQt55 = recurseIntoAttrs (lib.makeScope qt55.newScope mkLibsForQt5); + + qt56 = recurseIntoAttrs (import ../development/libraries/qt-5/5.6 { + inherit newScope; + inherit stdenv fetchurl makeSetupHook makeWrapper; + bison = bison2; # error: too few arguments to function 'int yylex(... + cups = if stdenv.isLinux then cups else null; + harfbuzz = harfbuzz-icu; + mesa = mesa_noglu; + inherit perl; + inherit (gst_all_1) gstreamer gst-plugins-base; + }); + + libsForQt56 = recurseIntoAttrs (lib.makeScope qt56.newScope mkLibsForQt5); + + qt57 = recurseIntoAttrs (import ../development/libraries/qt-5/5.7 { + inherit newScope; + inherit stdenv fetchurl makeSetupHook makeWrapper; + bison = bison2; # error: too few arguments to function 'int yylex(... + cups = if stdenv.isLinux then cups else null; + harfbuzz = harfbuzz-icu; + mesa = mesa_noglu; + inherit perl; + inherit (gst_all_1) gstreamer gst-plugins-base; + }); - qt56 = - let imported = import ../development/libraries/qt-5/5.6 { inherit pkgs; }; - in recurseIntoAttrs (imported.override (super: qt5LibsFun)); + libsForQt57 = recurseIntoAttrs (lib.makeScope qt57.newScope mkLibsForQt5); - qt57 = - let imported = import ../development/libraries/qt-5/5.7 { inherit pkgs; }; - in recurseIntoAttrs (imported.override (super: qt5LibsFun)); + qt5 = qt57; + libsForQt5 = libsForQt57; - qt5 = qt56; + qt5ct = libsForQt5.callPackage ../tools/misc/qt5ct { }; - qt5ct = qt5.callPackage ../tools/misc/qt5ct { }; + mkLibsForQt5 = self: with self; { - qt5LibsFun = self: with self; - let kdeFrameworks = - import ../development/libraries/kde-frameworks { inherit pkgs; } self; - in { + ### KDE FRAMEWORKS + + inherit (kdeFrameworks.override { libsForQt5 = self; }) + attica baloo bluez-qt kactivities kactivities-stats + karchive kauth kbookmarks kcmutils kcodecs kcompletion kconfig + kconfigwidgets kcoreaddons kcrash kdbusaddons kdeclarative kdelibs4support + kdesignerplugin kdnssd kemoticons kfilemetadata kglobalaccel kguiaddons + khtml ki18n kiconthemes kidletime kimageformats kio kitemmodels kitemviews + kjobwidgets kjs kjsembed kmediaplayer knewstuff knotifications + knotifyconfig kpackage kparts kpeople kplotting kpty kross krunner + kservice ktexteditor ktextwidgets kunitconversion kwallet kwayland + kwidgetsaddons kwindowsystem kxmlgui kxmlrpcclient modemmanager-qt + networkmanager-qt plasma-framework solid sonnet syntax-highlighting + threadweaver; - inherit kdeFrameworks; + ### KDE PLASMA 5 + + inherit (plasma5.override { libsForQt5 = self; }) + kdecoration khotkeys libkscreen libksysguard; + + ### KDE APPLICATIONS + + inherit (kdeApplications.override { libsForQt5 = self; }) + libkdcraw libkexiv2 libkipi libkomparediff2; + + ### LIBRARIES accounts-qt = callPackage ../development/libraries/accounts-qt { }; @@ -9301,10 +9388,7 @@ with pkgs; kirigami_1 = callPackage ../development/libraries/kirigami { }; - kirigami_2 = callPackage ../development/libraries/kirigami/v2.nix { - # kirigami v2 requires qt 5.7 and above - inherit (qt57) qtbase qtquickcontrols2; - }; + kirigami_2 = callPackage ../development/libraries/kirigami/v2.nix { }; kirigami = kirigami_1; @@ -9314,7 +9398,7 @@ with pkgs; libkeyfinder = callPackage ../development/libraries/libkeyfinder { }; - libktorrent = callPackage ../development/libraries/libktorrent/5.nix { }; + libktorrent = callPackage ../development/libraries/libktorrent { }; mlt = callPackage ../development/libraries/mlt/qt-5.nix { ffmpeg = ffmpeg_2; @@ -9344,6 +9428,8 @@ with pkgs; qca-qt5 = callPackage ../development/libraries/qca-qt5 { }; + qmltermwidget = callPackage ../development/libraries/qmltermwidget { }; + qscintilla = callPackage ../development/libraries/qscintilla { withQt5 = true; }; @@ -9354,9 +9440,7 @@ with pkgs; qtstyleplugins = callPackage ../development/libraries/qtstyleplugins { }; - quazip = callPackage ../development/libraries/quazip { - qt = qtbase; - }; + quazip = callPackage ../development/libraries/quazip { }; qwt = callPackage ../development/libraries/qwt/6.nix { }; @@ -9370,7 +9454,7 @@ with pkgs; qtwebkit-plugins = callPackage ../development/libraries/qtwebkit-plugins { }; - } // kdeFrameworks; + }; qtEnv = qt5.env; qt5Full = qt5.full; @@ -10412,6 +10496,8 @@ with pkgs; hbase = callPackage ../servers/hbase {}; + hiawatha = callPackage ../servers/http/hiawatha {}; + ircdHybrid = callPackage ../servers/irc/ircd-hybrid { }; jboss = callPackage ../servers/http/jboss { }; @@ -10599,7 +10685,7 @@ with pkgs; }; mysql57 = callPackage ../servers/sql/mysql/5.7.x.nix { - inherit (darwin) cctools; + inherit (darwin) cctools developer_cmds; inherit (darwin.apple_sdk.frameworks) CoreServices; boost = boost159; }; @@ -10783,6 +10869,8 @@ with pkgs; ruby = ruby_2_1; }; + uchiwa = callPackage ../servers/monitoring/uchiwa { }; + shishi = callPackage ../servers/shishi { pam = if stdenv.isLinux then pam else null; # see also openssl, which has/had this same trick @@ -11062,6 +11150,10 @@ with pkgs; dstat = callPackage ../os-specific/linux/dstat { }; + fwupd = callPackage ../os-specific/linux/firmware/fwupd { inherit (gnome2) gtk_doc; }; + + fwupdate = callPackage ../os-specific/linux/firmware/fwupdate { }; + libossp_uuid = callPackage ../development/libraries/libossp-uuid { }; libuuid = @@ -11261,6 +11353,7 @@ with pkgs; kernelPatches = [ kernelPatches.bridge_stp_helper kernelPatches.packet_fix_race_condition_CVE_2016_8655 + kernelPatches.DCCP_double_free_vulnerability_CVE-2017-6074 ] ++ lib.optionals ((platform.kernelArch or null) == "mips") [ kernelPatches.mips_fpureg_emu @@ -11273,6 +11366,7 @@ with pkgs; kernelPatches = with kernelPatches; [ bridge_stp_helper packet_fix_race_condition_CVE_2016_8655 + DCCP_double_free_vulnerability_CVE-2017-6074 ]; }; @@ -11281,6 +11375,7 @@ with pkgs; [ bridge_stp_helper lguest_entry-linkage packet_fix_race_condition_CVE_2016_8655 + DCCP_double_free_vulnerability_CVE-2017-6074 ] ++ lib.optionals ((platform.kernelArch or null) == "mips") [ kernelPatches.mips_fpureg_emu @@ -11292,6 +11387,7 @@ with pkgs; linux_3_12 = callPackage ../os-specific/linux/kernel/linux-3.12.nix { kernelPatches = with kernelPatches; [ bridge_stp_helper + DCCP_double_free_vulnerability_CVE-2017-6074 ] ++ lib.optionals ((platform.kernelArch or null) == "mips") [ kernelPatches.mips_fpureg_emu @@ -11303,6 +11399,7 @@ with pkgs; linux_4_1 = callPackage ../os-specific/linux/kernel/linux-4.1.nix { kernelPatches = [ kernelPatches.bridge_stp_helper + kernelPatches.DCCP_double_free_vulnerability_CVE-2017-6074 ] ++ lib.optionals ((platform.kernelArch or null) == "mips") [ kernelPatches.mips_fpureg_emu @@ -11359,6 +11456,7 @@ with pkgs; kernelPatches = [ kernelPatches.bridge_stp_helper kernelPatches.modinst_arg_list_too_long + kernelPatches.DCCP_double_free_vulnerability_CVE-2017-6074 ] ++ lib.optionals ((platform.kernelArch or null) == "mips") [ kernelPatches.mips_fpureg_emu kernelPatches.mips_fpu_sigill @@ -11371,6 +11469,7 @@ with pkgs; kernelPatches.chromiumos_mfd_fix_dependency kernelPatches.chromiumos_no_link_restrictions kernelPatches.genksyms_fix_segfault + kernelPatches.DCCP_double_free_vulnerability_CVE-2017-6074 ]; }; @@ -11378,6 +11477,7 @@ with pkgs; kernelPatches = [ kernelPatches.chromiumos_Kconfig_fix_entries_3_18 kernelPatches.chromiumos_no_link_restrictions kernelPatches.genksyms_fix_segfault + kernelPatches.DCCP_double_free_vulnerability_CVE-2017-6074 ]; }; @@ -11692,9 +11792,7 @@ with pkgs; gocode = callPackage ../development/tools/gocode { }; - kgocode = callPackage ../applications/misc/kgocode { - inherit (pkgs.kde4) kdelibs; - }; + kgocode = callPackage ../applications/misc/kgocode { }; gotags = callPackage ../development/tools/gotags { }; @@ -12032,8 +12130,7 @@ with pkgs; xf86_input_mtrack = callPackage ../os-specific/linux/xf86-input-mtrack { }; - xf86_input_multitouch = - callPackage ../os-specific/linux/xf86-input-multitouch { }; + xf86_input_multitouch = callPackage ../os-specific/linux/xf86-input-multitouch { }; xf86_input_wacom = callPackage ../os-specific/linux/xf86-input-wacom { }; @@ -12071,6 +12168,8 @@ with pkgs; bgnet = callPackage ../data/documentation/bgnet { }; + inherit (kdeFrameworks) breeze-icons; + cacert = callPackage ../data/misc/cacert { }; caladea = callPackage ../data/fonts/caladea {}; @@ -12307,6 +12406,8 @@ with pkgs; oxygenfonts = callPackage ../data/fonts/oxygenfonts { }; + inherit (kdeFrameworks) oxygen-icons5; + paper-icon-theme = callPackage ../data/icons/paper-icon-theme { }; pecita = callPackage ../data/fonts/pecita {}; @@ -12438,7 +12539,7 @@ with pkgs; xlsx2csv = pythonPackages.xlsx2csv; - zeal = qt5.callPackage ../data/documentation/zeal { }; + zeal = libsForQt5.callPackage ../data/documentation/zeal { }; ### APPLICATIONS @@ -12514,6 +12615,10 @@ with pkgs; tcl = tcl-8_5; }; + amarok = kde4.callPackage ../applications/audio/amarok { + ffmpeg = ffmpeg_2; + }; + AMB-plugins = callPackage ../applications/audio/AMB-plugins { }; ams-lv2 = callPackage ../applications/audio/ams-lv2 { }; @@ -12528,13 +12633,13 @@ with pkgs; antfs-cli = callPackage ../applications/misc/antfs-cli {}; - antimony = qt5.callPackage ../applications/graphics/antimony {}; + antimony = libsForQt5.callPackage ../applications/graphics/antimony {}; antiword = callPackage ../applications/office/antiword {}; ao = callPackage ../applications/graphics/ao {}; - aqemu = qt5.callPackage ../applications/virtualization/aqemu { }; + aqemu = libsForQt5.callPackage ../applications/virtualization/aqemu { }; ardour = callPackage ../applications/audio/ardour { inherit (gnome2) libgnomecanvas libgnomecanvasmm; @@ -12560,7 +12665,7 @@ with pkgs; astroid = callPackage ../applications/networking/mailreaders/astroid { }; audacious = callPackage ../applications/audio/audacious { }; - audaciousQt5 = qt5.callPackage ../applications/audio/audacious/qt-5.nix { }; + audaciousQt5 = libsForQt5.callPackage ../applications/audio/audacious/qt-5.nix { }; audacity = callPackage ../applications/audio/audacity { }; @@ -12622,7 +12727,7 @@ with pkgs; }; awesome = awesome-4-0; - awesomebump = qt5.callPackage ../applications/graphics/awesomebump { }; + awesomebump = libsForQt5.callPackage ../applications/graphics/awesomebump { }; inherit (gnome3) baobab; @@ -12693,7 +12798,7 @@ with pkgs; bluejeans = callPackage ../applications/networking/browsers/mozilla-plugins/bluejeans { }; - bomi = qt5.callPackage ../applications/video/bomi { + bomi = libsForQt5.callPackage ../applications/video/bomi { youtube-dl = pythonPackages.youtube-dl; pulseSupport = config.pulseaudio or true; ffmpeg = ffmpeg_2; @@ -12721,7 +12826,11 @@ with pkgs; calcurse = callPackage ../applications/misc/calcurse { }; - calibre = qt5.callPackage ../applications/misc/calibre { }; + calibre = libsForQt5.callPackage ../applications/misc/calibre { }; + + calligra = kde4.callPackage ../applications/office/calligra { + vc = vc_0_7; + }; camlistore = callPackage ../applications/misc/camlistore { }; @@ -12737,7 +12846,7 @@ with pkgs; cava = callPackage ../applications/audio/cava { }; - cb2bib = qt5.callPackage ../applications/office/cb2bib { }; + cb2bib = libsForQt5.callPackage ../applications/office/cb2bib { }; cbatticon = callPackage ../applications/misc/cbatticon { }; @@ -12812,7 +12921,7 @@ with pkgs; cni = callPackage ../applications/networking/cluster/cni {}; - communi = qt5.callPackage ../applications/networking/irc/communi { }; + communi = libsForQt5.callPackage ../applications/networking/irc/communi { }; compiz = callPackage ../applications/window-managers/compiz { inherit (gnome2) GConf ORBit2 metacity; @@ -12859,7 +12968,7 @@ with pkgs; cutecom = callPackage ../tools/misc/cutecom { }; cutegram = - let callpkg = qt55.callPackage; + let callpkg = libsForQt55.callPackage; in callpkg ../applications/networking/instant-messengers/telegram/cutegram rec { libqtelegram-aseman-edition = callpkg ../applications/networking/instant-messengers/telegram/libqtelegram-aseman-edition { }; telegram-qml = callpkg ../applications/networking/instant-messengers/telegram/telegram-qml { @@ -12909,9 +13018,9 @@ with pkgs; plugins = []; }; - dfasma = qt5.callPackage ../applications/audio/dfasma { }; + dfasma = libsForQt5.callPackage ../applications/audio/dfasma { }; - dfilemanager = qt5.callPackage ../applications/misc/dfilemanager { }; + dfilemanager = libsForQt5.callPackage ../applications/misc/dfilemanager { }; dia = callPackage ../applications/graphics/dia { inherit (pkgs.gnome2) libart_lgpl libgnomeui; @@ -13259,7 +13368,7 @@ with pkgs; keepassx = callPackage ../applications/misc/keepassx { }; keepassx2 = callPackage ../applications/misc/keepassx/2.0.nix { }; - keepassx-community = qt5.callPackage ../applications/misc/keepassx/community.nix { }; + keepassx-community = libsForQt5.callPackage ../applications/misc/keepassx/community.nix { }; inherit (gnome3) evince; evolution_data_server = gnome3.evolution_data_server; @@ -13278,6 +13387,8 @@ with pkgs; fbreader = callPackage ../applications/misc/fbreader { }; + fdr = qt57.callPackage ../applications/science/programming/fdr { }; + fehlstart = callPackage ../applications/misc/fehlstart { }; fetchmail = callPackage ../applications/misc/fetchmail { }; @@ -13292,7 +13403,7 @@ with pkgs; inherit (darwin.apple_sdk.frameworks) CoreServices CoreAudio AudioUnit; }; - fmit = qt5.callPackage ../applications/audio/fmit { }; + fmit = libsForQt5.callPackage ../applications/audio/fmit { }; fmsynth = callPackage ../applications/audio/fmsynth { }; @@ -13310,7 +13421,7 @@ with pkgs; fribid = callPackage ../applications/networking/browsers/mozilla-plugins/fribid { }; - fritzing = qt5.callPackage ../applications/science/electronics/fritzing { }; + fritzing = libsForQt5.callPackage ../applications/science/electronics/fritzing { }; fvwm = callPackage ../applications/window-managers/fvwm { }; @@ -13341,7 +13452,7 @@ with pkgs; gnuradio-osmosdr = callPackage ../applications/misc/gnuradio-osmosdr { }; - goldendict = qt55.callPackage ../applications/misc/goldendict { }; + goldendict = libsForQt55.callPackage ../applications/misc/goldendict { }; inherit (ocamlPackages) google-drive-ocamlfuse; @@ -13449,7 +13560,7 @@ with pkgs; desktopName = "Firefox Beta"; }; - firestr = qt5.callPackage ../applications/networking/p2p/firestr + firestr = libsForQt5.callPackage ../applications/networking/p2p/firestr { boost = boost155; }; @@ -13600,7 +13711,7 @@ with pkgs; libquvi = callPackage ../applications/video/quvi/library.nix { }; - linssid = qt5.callPackage ../applications/networking/linssid { }; + linssid = libsForQt5.callPackage ../applications/networking/linssid { }; manuskript = callPackage ../applications/editors/manuskript { }; @@ -13687,7 +13798,7 @@ with pkgs; gosmore = callPackage ../applications/misc/gosmore { }; - gpsbabel = qt5.callPackage ../applications/misc/gpsbabel { }; + gpsbabel = libsForQt5.callPackage ../applications/misc/gpsbabel { }; gpscorrelate = callPackage ../applications/misc/gpscorrelate { }; @@ -13695,7 +13806,7 @@ with pkgs; gpsprune = callPackage ../applications/misc/gpsprune { }; - gpxsee = qt5.callPackage ../applications/misc/gpxsee { }; + gpxsee = libsForQt5.callPackage ../applications/misc/gpxsee { }; gtk2fontsel = callPackage ../applications/misc/gtk2fontsel { inherit (gnome2) gtk; @@ -13901,7 +14012,7 @@ with pkgs; lua = lua5_1; }; - ipe = qt5.callPackage ../applications/graphics/ipe { + ipe = libsForQt5.callPackage ../applications/graphics/ipe { ghostscript = ghostscriptX; texlive = texlive.combine { inherit (texlive) scheme-small; }; }; @@ -13965,30 +14076,58 @@ with pkgs; boost = boost155; }; - k9copy = qt5.callPackage ../applications/video/k9copy {}; + k3b-original = lowPrio (kde4.callPackage ../applications/misc/k3b { }); + + k3b = kde4.callPackage ../applications/misc/k3b/wrapper.nix { }; + + k9copy = libsForQt5.callPackage ../applications/video/k9copy {}; + + kadu = kde4.callPackage ../applications/networking/instant-messengers/kadu { }; + + kde-telepathy = kde4.callPackage ../applications/networking/instant-messengers/telepathy/kde {}; + + kdeApplications = + let + mkApplications = import ../applications/kde; + attrs = { + inherit stdenv lib libsForQt5 fetchurl recurseIntoAttrs; + inherit kdeDerivation plasma5; + inherit attica phonon; + }; + in + recurseIntoAttrs (makeOverridable mkApplications attrs); + + inherit (kdeApplications) + akonadi ark dolphin ffmpegthumbs filelight gwenview kate + kdenlive kcalc kcolorchooser kcontacts kgpg khelpcenter kig konsole marble + okteta okular spectacle; + + kdeconnect = libsForQt5.callPackage ../applications/misc/kdeconnect { }; - kdeconnect = qt5.callPackage ../applications/misc/kdeconnect { }; + kdecoration-viewer = libsForQt5.callPackage ../tools/misc/kdecoration-viewer { }; - kdecoration-viewer = kde5.callPackage ../tools/misc/kdecoration-viewer {}; + inherit (kdeFrameworks) kdesu; - kdevelop-pg-qt = kde5.callPackage ../applications/editors/kdevelop5/kdevelop-pg-qt.nix {}; + kdevelop-pg-qt = libsForQt5.callPackage ../applications/editors/kdevelop5/kdevelop-pg-qt.nix {}; - kdevelop = kde5.callPackage ../applications/editors/kdevelop5/kdevelop.nix { + kdevelop = libsForQt5.callPackage ../applications/editors/kdevelop5/kdevelop.nix { llvmPackages = llvmPackages_38; }; - kdevplatform = kde5.callPackage ../applications/editors/kdevelop5/kdevplatform.nix {}; + kdevplatform = libsForQt5.callPackage ../applications/editors/kdevelop5/kdevplatform.nix { }; keepnote = callPackage ../applications/office/keepnote { }; kermit = callPackage ../tools/misc/kermit { }; - keyfinder = qt5.callPackage ../applications/audio/keyfinder { }; + keyfinder = libsForQt5.callPackage ../applications/audio/keyfinder { }; - keyfinder-cli = qt5.callPackage ../applications/audio/keyfinder-cli { }; + keyfinder-cli = libsForQt5.callPackage ../applications/audio/keyfinder-cli { }; keymon = callPackage ../applications/video/key-mon { }; + kgraphviewer = kde4.callPackage ../applications/graphics/kgraphviewer { }; + khal = callPackage ../applications/misc/khal { }; khard = callPackage ../applications/misc/khard { }; @@ -13997,27 +14136,33 @@ with pkgs; qt = qt4; }; - kile = kde5.callPackage ../applications/editors/kile/frameworks.nix { }; + kile = libsForQt5.callPackage ../applications/editors/kile { }; kino = callPackage ../applications/video/kino { inherit (gnome2) libglade; ffmpeg = ffmpeg_2; }; + kipi-plugins = libsForQt5.callPackage ../applications/graphics/kipi-plugins { }; + kiwix = callPackage ../applications/misc/kiwix { stdenv = overrideCC stdenv gcc49; }; - konversation = qt5.callPackage ../applications/networking/irc/konversation/1.6.nix { }; + kmplayer = kde4.callPackage ../applications/video/kmplayer { }; + + konversation = libsForQt5.callPackage ../applications/networking/irc/konversation { }; - krita = qt5.callPackage ../applications/graphics/krita { + krita = libsForQt5.callPackage ../applications/graphics/krita { vc = vc_0_7; openjpeg = openjpeg_1; }; + krusader = kde4.callPackage ../applications/misc/krusader { }; + ksuperkey = callPackage ../tools/X11/ksuperkey { }; - ktorrent = qt5.callPackage ../applications/networking/p2p/ktorrent/5.nix { }; + ktorrent = libsForQt5.callPackage ../applications/networking/p2p/ktorrent { }; kubernetes = callPackage ../applications/networking/cluster/kubernetes { go = go_1_6; @@ -14141,14 +14286,7 @@ with pkgs; lrzsz = callPackage ../tools/misc/lrzsz { }; - luakit = callPackage ../applications/networking/browsers/luakit { - inherit (lua51Packages) luafilesystem luasqlite3; - lua5 = lua5_1; - gtk = gtk3; - webkit = webkitgtk2; - }; - - luminanceHDR = qt55.callPackage ../applications/graphics/luminance-hdr { }; + luminanceHDR = libsForQt55.callPackage ../applications/graphics/luminance-hdr { }; lxdvdrip = callPackage ../applications/video/lxdvdrip { }; @@ -14167,7 +14305,7 @@ with pkgs; lynx = callPackage ../applications/networking/browsers/lynx { }; - lyx = qt5.callPackage ../applications/misc/lyx { }; + lyx = libsForQt5.callPackage ../applications/misc/lyx { }; mail-notification = callPackage ../desktops/gnome-2/desktop/mail-notification {}; @@ -14398,13 +14536,17 @@ with pkgs; else null; }; - musescore = qt55.callPackage ../applications/audio/musescore { }; + musescore = libsForQt55.callPackage ../applications/audio/musescore { }; mutt = callPackage ../applications/networking/mailreaders/mutt { }; mutt-with-sidebar = callPackage ../applications/networking/mailreaders/mutt { withSidebar = true; }; + mwic = callPackage ../applications/misc/mwic { + pythonPackages = python3Packages; + }; + neomutt = callPackage ../applications/networking/mailreaders/neomutt { }; natron = callPackage ../applications/video/natron { }; @@ -14442,11 +14584,11 @@ with pkgs; scudcloud = callPackage ../applications/networking/instant-messengers/scudcloud { }; - shotcut = qt5.callPackage ../applications/video/shotcut { }; + shotcut = libsForQt5.callPackage ../applications/video/shotcut { }; - smplayer = qt5.callPackage ../applications/video/smplayer { }; + smplayer = libsForQt5.callPackage ../applications/video/smplayer { }; - smtube = qt55.callPackage ../applications/video/smtube {}; + smtube = libsForQt55.callPackage ../applications/video/smtube {}; sudolikeaboss = callPackage ../tools/security/sudolikeaboss { }; @@ -14549,7 +14691,7 @@ with pkgs; oblogout = callPackage ../tools/X11/oblogout { }; - obs-studio = qt5.callPackage ../applications/video/obs-studio { + obs-studio = libsForQt5.callPackage ../applications/video/obs-studio { alsaSupport = stdenv.isLinux; pulseaudioSupport = config.pulseaudio or true; }; @@ -14649,9 +14791,9 @@ with pkgs; pflask = callPackage ../os-specific/linux/pflask {}; - photoqt = qt5.callPackage ../applications/graphics/photoqt { }; + photoqt = libsForQt5.callPackage ../applications/graphics/photoqt { }; - phototonic = qt5.callPackage ../applications/graphics/phototonic { }; + phototonic = libsForQt5.callPackage ../applications/graphics/phototonic { }; phrasendrescher = callPackage ../tools/security/phrasendrescher { }; @@ -14764,6 +14906,8 @@ with pkgs; autoAwaySupport = config.profanity.autoAwaySupport or true; }; + psi = kde4.callPackage ../applications/networking/instant-messengers/psi { }; + psol = callPackage ../development/libraries/psol/default.nix { }; pstree = callPackage ../applications/misc/pstree { }; @@ -14781,7 +14925,7 @@ with pkgs; pythonmagick = callPackage ../applications/graphics/PythonMagick { }; - qbittorrent = qt5.callPackage ../applications/networking/p2p/qbittorrent { + qbittorrent = libsForQt5.callPackage ../applications/networking/p2p/qbittorrent { boost = boost; libtorrentRasterbar = libtorrentRasterbar_1_0; }; @@ -14795,15 +14939,15 @@ with pkgs; qgis = callPackage ../applications/gis/qgis {}; - qgroundcontrol = qt55.callPackage ../applications/science/robotics/qgroundcontrol { }; + qgroundcontrol = libsForQt55.callPackage ../applications/science/robotics/qgroundcontrol { }; - qjackctl = qt5.callPackage ../applications/audio/qjackctl { }; + qjackctl = libsForQt5.callPackage ../applications/audio/qjackctl { }; qmidinet = callPackage ../applications/audio/qmidinet { }; qmidiroute = callPackage ../applications/audio/qmidiroute { }; - qmmp = qt5.callPackage ../applications/audio/qmmp { }; + qmmp = libsForQt5.callPackage ../applications/audio/qmmp { }; qnotero = callPackage ../applications/office/qnotero { }; @@ -14815,15 +14959,15 @@ with pkgs; qt = qt4; }; - qsyncthingtray = qt5.callPackage ../applications/misc/qsyncthingtray { }; + qsyncthingtray = libsForQt5.callPackage ../applications/misc/qsyncthingtray { }; qsynth = callPackage ../applications/audio/qsynth { }; qtbitcointrader = callPackage ../applications/misc/qtbitcointrader { }; - qtox = qt5.callPackage ../applications/networking/instant-messengers/qtox { }; + qtox = libsForQt5.callPackage ../applications/networking/instant-messengers/qtox { }; - qtpass = qt5.callPackage ../applications/misc/qtpass { }; + qtpass = libsForQt5.callPackage ../applications/misc/qtpass { }; qtpfsgui = callPackage ../applications/graphics/qtpfsgui { }; @@ -14831,7 +14975,7 @@ with pkgs; qtscrobbler = callPackage ../applications/audio/qtscrobbler { }; - quassel = qt5.callPackage ../applications/networking/irc/quassel/qt-5.nix { + quassel = libsForQt5.callPackage ../applications/networking/irc/quassel { monolithic = true; daemon = false; client = false; @@ -14857,16 +15001,16 @@ with pkgs; quirc = callPackage ../tools/graphics/quirc {}; - quiterss = qt5.callPackage ../applications/networking/newsreaders/quiterss {}; + quiterss = libsForQt5.callPackage ../applications/networking/newsreaders/quiterss {}; quodlibet-without-gst-plugins = callPackage ../applications/audio/quodlibet { }; quodlibet = callPackage ../applications/audio/quodlibet { withGstPlugins = true; - gst_plugins_bad = null; + gst-plugins-bad = null; }; - qutebrowser = qt5.callPackage ../applications/networking/browsers/qutebrowser { + qutebrowser = libsForQt5.callPackage ../applications/networking/browsers/qutebrowser { inherit (python3Packages) buildPythonApplication pyqt5 jinja2 pygments pyyaml pypeg2 cssutils; inherit (gst_all_1) gst-plugins-base gst-plugins-good gst-plugins-bad gst-plugins-ugly gst-libav; }; @@ -14885,7 +15029,7 @@ with pkgs; demo = false; }; - rapcad = qt55.callPackage ../applications/graphics/rapcad { boost = boost159; }; + rapcad = libsForQt55.callPackage ../applications/graphics/rapcad { boost = boost159; }; rapidsvn = callPackage ../applications/version-management/rapidsvn { }; @@ -14927,7 +15071,7 @@ with pkgs; retroshare06 = lowPrio (callPackage ../applications/networking/p2p/retroshare/0.6.nix { }); - ricochet = qt55.callPackage ../applications/networking/instant-messengers/ricochet { }; + ricochet = libsForQt55.callPackage ../applications/networking/instant-messengers/ricochet { }; ripser = callPackage ../applications/science/math/ripser { }; @@ -15107,13 +15251,13 @@ with pkgs; bittorrentSync14 = callPackage ../applications/networking/bittorrentsync/1.4.x.nix { }; bittorrentSync20 = callPackage ../applications/networking/bittorrentsync/2.0.x.nix { }; - dropbox = qt5.callPackage ../applications/networking/dropbox { }; + dropbox = libsForQt5.callPackage ../applications/networking/dropbox { }; dropbox-cli = callPackage ../applications/networking/dropbox-cli { }; insync = callPackage ../applications/networking/insync { }; - lightdm = qt5.callPackage ../applications/display-managers/lightdm { + lightdm = libsForQt5.callPackage ../applications/display-managers/lightdm { qt4 = null; withQt5 = false; }; @@ -15134,11 +15278,11 @@ with pkgs; printrun = callPackage ../applications/misc/printrun { }; - sddm = qt5.callPackage ../applications/display-managers/sddm { + sddm = libsForQt5.callPackage ../applications/display-managers/sddm { themes = []; # extra themes, etc. }; - skrooge2 = qt5.callPackage ../applications/office/skrooge/2.nix {}; + skrooge = libsForQt5.callPackage ../applications/office/skrooge {}; slim = callPackage ../applications/display-managers/slim { libpng = libpng12; @@ -15160,7 +15304,7 @@ with pkgs; sipp = callPackage ../development/tools/misc/sipp { }; - sonic-visualiser = qt5.callPackage ../applications/audio/sonic-visualiser { + sonic-visualiser = libsForQt5.callPackage ../applications/audio/sonic-visualiser { inherit (pkgs.vamp) vampSDK; }; @@ -15275,7 +15419,7 @@ with pkgs; gconf = gnome2.GConf; }; - teamspeak_client = qt55.callPackage ../applications/networking/instant-messengers/teamspeak/client.nix { }; + teamspeak_client = libsForQt55.callPackage ../applications/networking/instant-messengers/teamspeak/client.nix { }; teamspeak_server = callPackage ../applications/networking/instant-messengers/teamspeak/server.nix { }; taskjuggler-2 = callPackage ../applications/misc/taskjuggler/2.x { }; @@ -15366,7 +15510,6 @@ with pkgs; todo-txt-cli = callPackage ../applications/office/todo.txt-cli { }; tomahawk = callPackage ../applications/audio/tomahawk { - inherit (pkgs.kde4) kdelibs; taglib = taglib_1_9; enableXMPP = config.tomahawk.enableXMPP or true; enableKDE = config.tomahawk.enableKDE or false; @@ -15421,7 +15564,7 @@ with pkgs; boost = boost160; }; - twmn = qt5.callPackage ../applications/misc/twmn { }; + twmn = libsForQt5.callPackage ../applications/misc/twmn { }; umurmur = callPackage ../applications/networking/umurmur { }; @@ -15499,7 +15642,7 @@ with pkgs; neovim = callPackage ../applications/editors/neovim { }; - neovim-qt = qt5.callPackage ../applications/editors/neovim/qt.nix { }; + neovim-qt = libsForQt5.callPackage ../applications/editors/neovim/qt.nix { }; neovim-pygui = pythonPackages.neovim_gui; @@ -15587,7 +15730,7 @@ with pkgs; gtk = gtk2; }; - vlc_qt5 = qt5.vlc; + vlc_qt5 = libsForQt5.vlc; vmpk = callPackage ../applications/audio/vmpk { }; @@ -15693,6 +15836,9 @@ with pkgs; in with libretro; ([ ] ++ optional (cfg.enable4do or false) _4do + ++ optional (cfg.enableBeetlePCEFast or false) beetle-pce-fast + ++ optional (cfg.enableBeetlePSX or false) beetle-psx + ++ optional (cfg.enableBeetleSaturn or false) beetle-saturn ++ optional (cfg.enableBsnesMercury or false) bsnes-mercury ++ optional (cfg.enableDesmume or false) desmume ++ optional (cfg.enableFBA or false) fba @@ -15700,9 +15846,6 @@ with pkgs; ++ optional (cfg.enableGambatte or false) gambatte ++ optional (cfg.enableGenesisPlusGX or false) genesis-plus-gx ++ optional (cfg.enableMAME or false) mame - ++ optional (cfg.enableMednafenPCEFast or false) mednafen-pce-fast - ++ optional (cfg.enableMednafenPSX or false) mednafen-psx - ++ optional (cfg.enableMednafenSaturn or false) mednafen-saturn ++ optional (cfg.enableMGBA or false) mgba ++ optional (cfg.enableMupen64Plus or false) mupen64plus ++ optional (cfg.enableNestopia or false) nestopia @@ -15717,6 +15860,14 @@ with pkgs; ++ optional (cfg.enableStella or false) stella ++ optional (cfg.enableVbaNext or false) vba-next ++ optional (cfg.enableVbaM or false) vba-m + + # added on 2017-02-25 due #23163 + ++ optional (cfg.enableMednafenPCEFast or false) + (throw "nix config option enableMednafenPCEFast has been renamed to enableBeetlePCEFast") + ++ optional (cfg.enableMednafenPSX or false) + (throw "nix config option enableMednafenPSX has been renamed to enableBeetlePSX") + ++ optional (cfg.enableMednafenSaturn or false) + (throw "nix config option enableMednafenSaturn has been renamed to enableBeetleSaturn") ); wrapRetroArch = { retroarch }: callPackage ../misc/emulators/retroarch/wrapper.nix { @@ -15792,7 +15943,7 @@ with pkgs; }; xbmc-retroarch-advanced-launchers = kodi-retroarch-advanced-launchers; - xca = qt5.callPackage ../applications/misc/xca { }; + xca = libsForQt5.callPackage ../applications/misc/xca { }; xcalib = callPackage ../tools/X11/xcalib { }; @@ -15955,7 +16106,9 @@ with pkgs; yabar = callPackage ../applications/window-managers/yabar { }; - yakuake = kde5.callPackage ../applications/misc/yakuake/3.0.nix {}; + yakuake = libsForQt5.callPackage ../applications/misc/yakuake { + inherit (kdeApplications) konsole; + }; yarp = callPackage ../applications/science/robotics/yarp {}; @@ -15975,6 +16128,8 @@ with pkgs; zam-plugins = callPackage ../applications/audio/zam-plugins { }; + zanshin = kde4.callPackage ../applications/office/zanshin { }; + zathura = callPackage ../applications/misc/zathura { useMupdf = config.zathura.useMupdf or true; }; @@ -16076,13 +16231,13 @@ with pkgs; chessdb = callPackage ../games/chessdb { }; - chessx = qt5.callPackage ../games/chessx { }; + chessx = libsForQt5.callPackage ../games/chessx { }; chocolateDoom = callPackage ../games/chocolate-doom { }; ckan = callPackage ../games/ckan { }; - cockatrice = qt5.callPackage ../games/cockatrice { }; + cockatrice = libsForQt5.callPackage ../games/cockatrice { }; commandergenius = callPackage ../games/commandergenius { }; @@ -16113,7 +16268,8 @@ with pkgs; dhewm3 = callPackage ../games/dhewm3 {}; - digikam5 = kde5.callPackage ../applications/graphics/digikam/5.nix { + digikam = libsForQt5.callPackage ../applications/graphics/digikam { + inherit (plasma5) oxygen; boost = boost160; }; @@ -16161,7 +16317,7 @@ with pkgs; fish-fillets-ng = callPackage ../games/fish-fillets-ng {}; - flightgear = qt5.callPackage ../games/flightgear { }; + flightgear = libsForQt5.callPackage ../games/flightgear { }; freecell-solver = callPackage ../games/freecell-solver { }; @@ -16239,6 +16395,8 @@ with pkgs; lua = lua5; }; + ja2-stracciatella = callPackage ../games/ja2-stracciatella { }; + klavaro = callPackage ../games/klavaro {}; kobodeluxe = callPackage ../games/kobodeluxe { }; @@ -16274,7 +16432,7 @@ with pkgs; minecraft-server = callPackage ../games/minecraft-server { }; - multimc = qt5.callPackage ../games/multimc { }; + multimc = libsForQt5.callPackage ../games/multimc { }; minetest = callPackage ../games/minetest { libpng = libpng12; @@ -16284,7 +16442,7 @@ with pkgs; mrrescue = callPackage ../games/mrrescue { }; - mudlet = qt5.callPackage ../games/mudlet { + mudlet = libsForQt5.callPackage ../games/mudlet { inherit (lua51Packages) luafilesystem lrexlib luazip luasqlite3; }; @@ -16427,7 +16585,7 @@ with pkgs; solarus = callPackage ../games/solarus { }; - solarus-quest-editor = qt5.callPackage ../development/tools/solarus-quest-editor { }; + solarus-quest-editor = libsForQt5.callPackage ../development/tools/solarus-quest-editor { }; # You still can override by passing more arguments. space-orbit = callPackage ../games/space-orbit { }; @@ -16560,7 +16718,7 @@ with pkgs; warsow = callPackage ../games/warsow { }; - warzone2100 = qt5.callPackage ../games/warzone2100 { }; + warzone2100 = libsForQt5.callPackage ../games/warzone2100 { }; wesnoth = callPackage ../games/wesnoth { }; @@ -16662,216 +16820,30 @@ with pkgs; kakasi = callPackage ../tools/text/kakasi { }; - kde4 = recurseIntoAttrs pkgs.kde414; - - kde414 = - kdePackagesFor - { - libusb = libusb1; - python2Packages = python2Packages; + kde4 = + let + deps = lib.makeScope newScope (self: { inherit (python2Packages) python; - libcanberra = libcanberra_kde; + kdelibs = kdelibs4; boost = boost155; - kdelibs = kde5.kdelibs; - subversionClient = pkgs.subversion18.override { - bdbSupport = false; - perlBindings = true; - pythonBindings = true; - }; - ruby = ruby_2_2; # see https://github.com/NixOS/nixpkgs/pull/12610#issuecomment-188666473 ffmpeg = ffmpeg_2; # ffmpegthumb doesn't build otherwise - } - ../desktops/kde-4.14; - - - kdePackagesFor = extra: dir: - let - # list of extra packages not included in KDE - # the real work in this function is done below this list - extraPackages = callPackage: - rec { - amarok = callPackage ../applications/audio/amarok { - ffmpeg = ffmpeg_2; - }; - - bangarang = callPackage ../applications/video/bangarang { }; - - basket = callPackage ../applications/office/basket { }; - - bluedevil = callPackage ../tools/bluetooth/bluedevil { }; - - calligra = callPackage ../applications/office/calligra { - vc = vc_0_7; - }; - - choqok = callPackage ../applications/networking/instant-messengers/choqok { }; - - colord-kde = callPackage ../tools/misc/colord-kde { }; - - digikam = callPackage ../applications/graphics/digikam { }; - - eventlist = callPackage ../applications/office/eventlist {}; - - k3b-original = lowPrio (callPackage ../applications/misc/k3b { }); - - k3b = callPackage ../applications/misc/k3b/wrapper.nix { }; - - kadu = callPackage ../applications/networking/instant-messengers/kadu { }; - - kbibtex = callPackage ../applications/office/kbibtex { }; - - kde_gtk_config = callPackage ../tools/misc/kde-gtk-config { }; - - kde_wacomtablet = callPackage ../applications/misc/kde-wacomtablet { }; - - kdeconnect = callPackage ../applications/misc/kdeconnect/0.7.nix { }; - - kdenlive = callPackage ../applications/video/kdenlive { mlt = mlt-qt4; }; - - kdesvn = callPackage ../applications/version-management/kdesvn { }; - - kdevelop = callPackage ../applications/editors/kdevelop { }; - - kdevplatform = callPackage ../development/libraries/kdevplatform { - boost = boost155; - }; - - kdiff3 = callPackage ../tools/text/kdiff3 { }; - - kgraphviewer = callPackage ../applications/graphics/kgraphviewer { }; - - kile = callPackage ../applications/editors/kile { }; - - kmplayer = callPackage ../applications/video/kmplayer { }; - - kmymoney = callPackage ../applications/office/kmymoney { }; - - kipi_plugins = callPackage ../applications/graphics/kipi-plugins { }; - - konversation = callPackage ../applications/networking/irc/konversation { }; - - kvirc = callPackage ../applications/networking/irc/kvirc { }; - - krename = callPackage ../applications/misc/krename/kde4.nix { - taglib = taglib_1_9; - }; - - krusader = callPackage ../applications/misc/krusader { }; - - ksshaskpass = callPackage ../tools/security/ksshaskpass {}; - - ktorrent = callPackage ../applications/networking/p2p/ktorrent { }; - - kuickshow = callPackage ../applications/graphics/kuickshow { }; - - libalkimia = callPackage ../development/libraries/libalkimia { }; - - libktorrent = callPackage ../development/libraries/libktorrent { - boost = boost155; - }; - - libkvkontakte = callPackage ../development/libraries/libkvkontakte { }; - - liblikeback = callPackage ../development/libraries/liblikeback { }; - - libmm-qt = callPackage ../development/libraries/libmm-qt { }; - - libnm-qt = callPackage ../development/libraries/libnm-qt { }; - - massif-visualizer = callPackage ../development/tools/analysis/massif-visualizer { }; - - partitionManager = callPackage ../tools/misc/partition-manager { }; - - plasma-nm = callPackage ../tools/networking/plasma-nm { }; - - polkit_kde_agent = callPackage ../tools/security/polkit-kde-agent { }; - - qtcurve = callPackage ../misc/themes/qtcurve { }; - - quassel = callPackage ../applications/networking/irc/quassel rec { - monolithic = true; - daemon = false; - client = false; - withKDE = stdenv.isLinux; - qt = if withKDE then qt4 else qt5; # KDE supported quassel cannot build with qt5 yet (maybe in 0.12.0) - dconf = gnome3.dconf; - }; - - quasselWithoutKDE = (quassel.override { - monolithic = true; - daemon = false; - client = false; - withKDE = false; - #qt = qt5; - tag = "-without-kde"; - }); - - quasselDaemon = (quassel.override { - monolithic = false; - daemon = true; - client = false; - withKDE = false; - #qt = qt5; - tag = "-daemon"; - }); - - quasselClient = (quassel.override { - monolithic = false; - daemon = false; - client = true; - tag = "-client"; - }); - - quasselClientWithoutKDE = (quasselClient.override { - monolithic = false; - daemon = false; - client = true; - withKDE = false; - #qt = qt5; - tag = "-client-without-kde"; - }); - - rekonq-unwrapped = callPackage ../applications/networking/browsers/rekonq { }; - rekonq = wrapFirefox rekonq-unwrapped { }; - - kwebkitpart = callPackage ../applications/networking/browsers/kwebkitpart { }; - - rsibreak = callPackage ../applications/misc/rsibreak { }; - - semnotes = callPackage ../applications/misc/semnotes { }; - - skrooge = callPackage ../applications/office/skrooge { }; - - telepathy = callPackage ../applications/networking/instant-messengers/telepathy/kde {}; - - yakuake = callPackage ../applications/misc/yakuake { }; - - zanshin = callPackage ../applications/office/zanshin { }; - - kwooty = callPackage ../applications/networking/newsreaders/kwooty { }; - }; - - callPackageOrig = newScope extra; - - makePackages = extra: - let - callPackage = newScope (extra // self); - kde4 = callPackageOrig dir { inherit callPackage callPackageOrig; }; - self = - kde4 - // extraPackages callPackage - // { - inherit kde4; - wrapper = callPackage ../build-support/kdewrapper {}; - recurseForRelease = true; - }; - in self; + }); - in makeOverridable makePackages extra; + self = lib.makeScope deps.newScope (self: with self; + import ../desktops/kde-4.14 { + callPackageOrig = pkgs.callPackage; + inherit (self) callPackage; + inherit stdenv qt48 kdelibs; + } + ); + in recurseIntoAttrs self; - lumina = callPackage ../desktops/lumina { }; + lumina = libsForQt5.callPackage ../desktops/lumina { }; - lxqt = recurseIntoAttrs (callPackage ../desktops/lxqt { }); + lxqt = recurseIntoAttrs (import ../desktops/lxqt { + inherit pkgs libsForQt5 fetchFromGitHub; + inherit (lib) makeScope; + }); mate = recurseIntoAttrs (callPackage ../desktops/mate { callPackage = newScope pkgs.mate; @@ -16886,18 +16858,12 @@ with pkgs; inherit (python3Packages) python pygobject3 pyxdg; }; - redshift-plasma-applet = callPackage ../applications/misc/redshift-plasma-applet { }; + redshift-plasma-applet = libsForQt5.callPackage ../applications/misc/redshift-plasma-applet { }; orion = callPackage ../misc/themes/orion {}; albatross = callPackage ../misc/themes/albatross { }; - oxygen-gtk2 = callPackage ../misc/themes/gtk2/oxygen-gtk { }; - - oxygen-gtk3 = callPackage ../misc/themes/gtk3/oxygen-gtk3 { }; - - oxygen_gtk = oxygen-gtk2; # backwards compatibility - gtk_engines = callPackage ../misc/themes/gtk2/gtk-engines { }; gtk-engine-murrine = callPackage ../misc/themes/gtk2/gtk-engine-murrine { }; @@ -16906,23 +16872,6 @@ with pkgs; numix-gtk-theme = callPackage ../misc/themes/numix { }; - kde5 = - let - plasma = import ../desktops/kde-5/plasma { inherit pkgs; }; - applications = import ../desktops/kde-5/applications { inherit pkgs; }; - merged = self: - { - plasma = plasma self; - frameworks = qt5.kdeFrameworks; - applications = applications self; - kipi-plugins = self.callPackage ../applications/graphics/kipi-plugins/5.x.nix {}; - } - // qt5.kdeFrameworks - // plasma self - // applications self; - in - recurseIntoAttrs (lib.makeScope qt5.newScope merged); - theme-vertex = callPackage ../misc/themes/vertex { }; rox-filer = callPackage ../desktops/rox/rox-filer { @@ -16934,6 +16883,29 @@ with pkgs; xrandr-invert-colors = callPackage ../applications/misc/xrandr-invert-colors { }; + ### DESKTOP ENVIRONMENTS / PLASMA 5 + + plasma5 = + let + mkPlasma5 = import ../desktops/plasma-5; + attrs = { + inherit libsForQt5 kdeDerivation lib fetchurl; + inherit (gnome3) gconf; + }; + in + recurseIntoAttrs (makeOverridable mkPlasma5 attrs); + + inherit (kdeFrameworks) kded kinit frameworkintegration; + + inherit (plasma5) + bluedevil breeze-gtk breeze-qt4 breeze-qt5 breeze-grub breeze-plymouth + kactivitymanagerd kde-cli-tools kde-gtk-config kdeplasma-addons kgamma5 + kinfocenter kmenuedit kscreen kscreenlocker ksshaskpass ksysguard + kwallet-pam kwayland-integration kwin kwrited milou oxygen plasma-desktop + plasma-integration plasma-nm plasma-pa plasma-workspace + plasma-workspace-wallpapers polkit-kde-agent powerdevil startkde + systemsettings; + ### SCIENCE ### SCIENCE/GEOMETRY @@ -17428,7 +17400,7 @@ with pkgs; yacas = callPackage ../applications/science/math/yacas { }; - speedcrunch = qt5.callPackage ../applications/science/math/speedcrunch { }; + speedcrunch = libsForQt5.callPackage ../applications/science/math/speedcrunch { }; ### SCIENCE / MISC @@ -17459,7 +17431,7 @@ with pkgs; spyder = pythonPackages.spyder; - stellarium = qt5.callPackage ../applications/science/astronomy/stellarium { }; + stellarium = libsForQt5.callPackage ../applications/science/astronomy/stellarium { }; tulip = callPackage ../applications/science/misc/tulip { cmake = cmake_2_8; @@ -17521,7 +17493,7 @@ with pkgs; ### MISC - antimicro = qt5.callPackage ../tools/misc/antimicro { }; + antimicro = libsForQt5.callPackage ../tools/misc/antimicro { }; atari800 = callPackage ../misc/emulators/atari800 { }; @@ -17706,6 +17678,7 @@ with pkgs; kops = callPackage ../applications/networking/cluster/kops { }; lilypond = callPackage ../misc/lilypond { guile = guile_1_8; }; + lilypond-unstable = callPackage ../misc/lilypond/unstable.nix { guile = guile_1_8; }; mailcore2 = callPackage ../development/libraries/mailcore2 { }; @@ -17790,9 +17763,9 @@ with pkgs; pcre = pcre-cpp; }); - redis-desktop-manager = qt55.callPackage ../applications/misc/redis-desktop-manager { }; + redis-desktop-manager = libsForQt55.callPackage ../applications/misc/redis-desktop-manager { }; - robomongo = qt5.callPackage ../applications/misc/robomongo { }; + robomongo = libsForQt5.callPackage ../applications/misc/robomongo { }; rucksack = callPackage ../development/tools/rucksack { }; @@ -17986,8 +17959,6 @@ with pkgs; }; vimprobable2 = wrapFirefox vimprobable2-unwrapped { }; - inherit (kde4) rekonq; - vimb-unwrapped = callPackage ../applications/networking/browsers/vimb { webkit = webkitgtk2; }; @@ -17996,7 +17967,7 @@ with pkgs; vips = callPackage ../tools/graphics/vips { }; nip2 = callPackage ../tools/graphics/nip2 { }; - vokoscreen = qt5.callPackage ../applications/video/vokoscreen { }; + vokoscreen = libsForQt5.callPackage ../applications/video/vokoscreen { }; wavegain = callPackage ../applications/audio/wavegain { }; @@ -18159,7 +18130,7 @@ with pkgs; discord = callPackage ../applications/networking/instant-messengers/discord { }; - golden-cheetah = qt5.callPackage ../applications/misc/golden-cheetah {}; + golden-cheetah = libsForQt5.callPackage ../applications/misc/golden-cheetah {}; linkchecker = callPackage ../tools/networking/linkchecker { }; @@ -18181,9 +18152,9 @@ with pkgs; zuki-themes = callPackage ../misc/themes/zuki { }; - zoom-us = qt55.callPackage ../applications/networking/instant-messengers/zoom-us {}; + zoom-us = libsForQt55.callPackage ../applications/networking/instant-messengers/zoom-us {}; - tora = qt5.callPackage ../development/tools/tora {}; + tora = libsForQt5.callPackage ../development/tools/tora {}; xulrunner = firefox-unwrapped; diff --git a/pkgs/top-level/impure.nix b/pkgs/top-level/impure.nix index 61ef729fa104..c0f4e0fa089e 100644 --- a/pkgs/top-level/impure.nix +++ b/pkgs/top-level/impure.nix @@ -45,7 +45,7 @@ in overlays = dir: let content = readDir dir; in map (n: import (dir + ("/" + n))) - (builtins.filter (n: builtins.match ".*\.nix" n != null) + (builtins.filter (n: builtins.match ".*\.nix" n != null || pathExists (dir + ("/" + n + "/default.nix"))) (attrNames content)); in if dirPath != "" then diff --git a/pkgs/top-level/ocaml-packages.nix b/pkgs/top-level/ocaml-packages.nix index b980e0530201..4f5d29295620 100644 --- a/pkgs/top-level/ocaml-packages.nix +++ b/pkgs/top-level/ocaml-packages.nix @@ -202,7 +202,12 @@ let io-page = callPackage ../development/ocaml-modules/io-page { }; - ipaddr = callPackage ../development/ocaml-modules/ipaddr { }; + ipaddr_p4 = callPackage ../development/ocaml-modules/ipaddr/2.6.1.nix { }; + + ipaddr = + if lib.versionOlder "4.02" ocaml.version + then callPackage ../development/ocaml-modules/ipaddr { } + else ipaddr_p4; iso8601 = callPackage ../development/ocaml-modules/iso8601 { }; @@ -281,6 +286,8 @@ let mlgmpidl = callPackage ../development/ocaml-modules/mlgmpidl { }; + mparser = callPackage ../development/ocaml-modules/mparser { }; + mtime = callPackage ../development/ocaml-modules/mtime { }; nocrypto = callPackage ../development/ocaml-modules/nocrypto { @@ -392,10 +399,7 @@ let sequence = callPackage ../development/ocaml-modules/sequence { }; - spacetime_lib = if lib.versionOlder "4.04" ocaml.version then - callPackage ../development/tools/ocaml/ocamlbuild { } - else - null; + spacetime_lib = callPackage ../development/ocaml-modules/spacetime_lib { }; sqlexpr = callPackage ../development/ocaml-modules/sqlexpr { }; @@ -547,51 +551,112 @@ let buildOcamlJane = callPackage ../development/ocaml-modules/janestreet/buildOcamlJane.nix {}; - ppx_core = callPackage ../development/ocaml-modules/janestreet/ppx-core.nix {}; + ppx_core = + if lib.versionOlder "4.03" ocaml.version + then callPackage ../development/ocaml-modules/janestreet/ppx_core-113_33_01.nix {} + else callPackage ../development/ocaml-modules/janestreet/ppx-core.nix {}; - ppx_optcomp = callPackage ../development/ocaml-modules/janestreet/ppx-optcomp.nix {}; + ppx_optcomp = + if lib.versionOlder "4.03" ocaml.version + then callPackage ../development/ocaml-modules/janestreet/ppx_optcomp-113_33_01.nix { + oasis = ocaml_oasis; } + else callPackage ../development/ocaml-modules/janestreet/ppx-optcomp.nix {}; ppx_driver = callPackage ../development/ocaml-modules/janestreet/ppx-driver.nix {}; - ppx_type_conv = callPackage ../development/ocaml-modules/janestreet/ppx-type-conv.nix {}; + ppx_type_conv = + if lib.versionOlder "4.03" ocaml.version + then callPackage ../development/ocaml-modules/janestreet/ppx_type_conv-113_33_02.nix { } + else callPackage ../development/ocaml-modules/janestreet/ppx-type-conv.nix {}; - ppx_compare = callPackage ../development/ocaml-modules/janestreet/ppx-compare.nix {}; + ppx_compare = + if lib.versionOlder "4.03" ocaml.version + then callPackage ../development/ocaml-modules/janestreet/ppx_compare-113_33_00.nix {} + else callPackage ../development/ocaml-modules/janestreet/ppx-compare.nix {}; ppx_here = callPackage ../development/ocaml-modules/janestreet/ppx-here.nix {}; - ppx_sexp_conv = callPackage ../development/ocaml-modules/janestreet/ppx-sexp-conv.nix {}; + ppx_sexp_conv = + if lib.versionOlder "4.03" ocaml.version + then callPackage ../development/ocaml-modules/janestreet/ppx_sexp_conv-113_33_01.nix { } + else callPackage ../development/ocaml-modules/janestreet/ppx-sexp-conv.nix {}; ppx_assert = callPackage ../development/ocaml-modules/janestreet/ppx-assert.nix {}; - ppx_inline_test = callPackage ../development/ocaml-modules/janestreet/ppx-inline-test.nix {}; - - ppx_bench = callPackage ../development/ocaml-modules/janestreet/ppx-bench.nix {}; - - ppx_bin_prot = callPackage ../development/ocaml-modules/janestreet/ppx-bin-prot.nix {}; - - ppx_custom_printf = callPackage ../development/ocaml-modules/janestreet/ppx-custom-printf.nix {}; - - ppx_enumerate = callPackage ../development/ocaml-modules/janestreet/ppx-enumerate.nix {}; - - ppx_fail = callPackage ../development/ocaml-modules/janestreet/ppx-fail.nix {}; - - ppx_fields_conv = callPackage ../development/ocaml-modules/janestreet/ppx-fields-conv.nix {}; - - ppx_let = callPackage ../development/ocaml-modules/janestreet/ppx-let.nix {}; - - ppx_pipebang = callPackage ../development/ocaml-modules/janestreet/ppx-pipebang.nix {}; - - ppx_sexp_message = callPackage ../development/ocaml-modules/janestreet/ppx-sexp-message.nix {}; - - ppx_sexp_value = callPackage ../development/ocaml-modules/janestreet/ppx-sexp-value.nix {}; - - ppx_typerep_conv = callPackage ../development/ocaml-modules/janestreet/ppx-typerep-conv.nix {}; - - ppx_variants_conv = callPackage ../development/ocaml-modules/janestreet/ppx-variants-conv.nix {}; - - ppx_expect = callPackage ../development/ocaml-modules/janestreet/ppx-expect.nix {}; - - ppx_jane = callPackage ../development/ocaml-modules/janestreet/ppx-jane.nix {}; + ppx_inline_test = + if lib.versionOlder "4.03" ocaml.version + then callPackage ../development/ocaml-modules/janestreet/ppx_inline_test-113_33_00.nix {} + else callPackage ../development/ocaml-modules/janestreet/ppx-inline-test.nix {}; + + ppx_bench = + if lib.versionOlder "4.03" ocaml.version + then callPackage ../development/ocaml-modules/janestreet/ppx_bench-113_33_00.nix {} + else callPackage ../development/ocaml-modules/janestreet/ppx-bench.nix {}; + + ppx_bin_prot = + if lib.versionOlder "4.03" ocaml.version + then callPackage ../development/ocaml-modules/janestreet/ppx_bin_prot-113_33_00.nix {} + else callPackage ../development/ocaml-modules/janestreet/ppx-bin-prot.nix {}; + + ppx_custom_printf = + if lib.versionOlder "4.03" ocaml.version + then callPackage ../development/ocaml-modules/janestreet/ppx_custom_printf-113_33_00.nix {} + else callPackage ../development/ocaml-modules/janestreet/ppx-custom-printf.nix {}; + + ppx_enumerate = + if lib.versionOlder "4.03" ocaml.version + then callPackage ../development/ocaml-modules/janestreet/ppx_enumerate-113_33_00.nix {} + else callPackage ../development/ocaml-modules/janestreet/ppx-enumerate.nix {}; + + ppx_fail = + if lib.versionOlder "4.03" ocaml.version + then callPackage ../development/ocaml-modules/janestreet/ppx_fail-113_33_00.nix {} + else callPackage ../development/ocaml-modules/janestreet/ppx-fail.nix {}; + + ppx_fields_conv = + if lib.versionOlder "4.03" ocaml.version + then callPackage ../development/ocaml-modules/janestreet/ppx_fields_conv-113_33_00.nix {} + else callPackage ../development/ocaml-modules/janestreet/ppx-fields-conv.nix {}; + + ppx_let = + if lib.versionOlder "4.03" ocaml.version + then callPackage ../development/ocaml-modules/janestreet/ppx_let-113_33_00.nix {} + else callPackage ../development/ocaml-modules/janestreet/ppx-let.nix {}; + + ppx_pipebang = + if lib.versionOlder "4.03" ocaml.version + then callPackage ../development/ocaml-modules/janestreet/ppx_pipebang-113_33_00.nix {} + else callPackage ../development/ocaml-modules/janestreet/ppx-pipebang.nix {}; + + ppx_sexp_message = + if lib.versionOlder "4.03" ocaml.version + then callPackage ../development/ocaml-modules/janestreet/ppx_sexp_message-113_33_00.nix {} + else callPackage ../development/ocaml-modules/janestreet/ppx-sexp-message.nix {}; + + ppx_sexp_value = + if lib.versionOlder "4.03" ocaml.version + then callPackage ../development/ocaml-modules/janestreet/ppx_sexp_value-113_33_00.nix {} + else callPackage ../development/ocaml-modules/janestreet/ppx-sexp-value.nix {}; + + ppx_typerep_conv = + if lib.versionOlder "4.03" ocaml.version + then callPackage ../development/ocaml-modules/janestreet/ppx_typerep_conv-113_33_00.nix {} + else callPackage ../development/ocaml-modules/janestreet/ppx-typerep-conv.nix {}; + + ppx_variants_conv = + if lib.versionOlder "4.03" ocaml.version + then callPackage ../development/ocaml-modules/janestreet/ppx_variants_conv-113_33_00.nix {} + else callPackage ../development/ocaml-modules/janestreet/ppx-variants-conv.nix {}; + + ppx_expect = + if lib.versionOlder "4.03" ocaml.version + then callPackage ../development/ocaml-modules/janestreet/ppx_expect-113_33_01.nix {} + else callPackage ../development/ocaml-modules/janestreet/ppx-expect.nix {}; + + ppx_jane = + if lib.versionOlder "4.03" ocaml.version + then callPackage ../development/ocaml-modules/janestreet/ppx_jane-113_33_00.nix {} + else callPackage ../development/ocaml-modules/janestreet/ppx-jane.nix {}; # Core sublibs @@ -606,7 +671,9 @@ let else fieldslib_p4; sexplib = - if lib.versionOlder "4.02" ocaml.version + if lib.versionOlder "4.03" ocaml.version + then callPackage ../development/ocaml-modules/janestreet/sexplib-113_33_00.nix {} + else if lib.versionOlder "4.02" ocaml.version then callPackage ../development/ocaml-modules/janestreet/sexplib.nix {} else sexplib_p4; @@ -621,12 +688,16 @@ let else bin_prot_p4; core_kernel = - if lib.versionOlder "4.02" ocaml.version + if lib.versionOlder "4.03" ocaml.version + then callPackage ../development/ocaml-modules/janestreet/core_kernel-113_33_01.nix {} + else if lib.versionOlder "4.02" ocaml.version then callPackage ../development/ocaml-modules/janestreet/core_kernel.nix {} else core_kernel_p4; core = - if lib.versionOlder "4.02" ocaml.version + if lib.versionOlder "4.03" ocaml.version + then callPackage ../development/ocaml-modules/janestreet/core-113_33_02.nix {} + else if lib.versionOlder "4.02" ocaml.version then callPackage ../development/ocaml-modules/janestreet/core.nix {} else core_p4; diff --git a/pkgs/top-level/php-packages.nix b/pkgs/top-level/php-packages.nix index fb1cd63a4dce..5f1e9a5f24ce 100644 --- a/pkgs/top-level/php-packages.nix +++ b/pkgs/top-level/php-packages.nix @@ -85,7 +85,7 @@ let buildInputs = [ pkgs.spidermonkey_1_8_5 ]; }; - xdebug = if isPhp7 then xdebug24 else xdebug23; + xdebug = if isPhp7 then xdebug25 else xdebug23; xdebug23 = assert !isPhp7; buildPecl { name = "xdebug-2.3.1"; @@ -96,10 +96,10 @@ let checkTarget = "test"; }; - xdebug24 = buildPecl { - name = "xdebug-2.4.0RC3"; + xdebug25 = buildPecl { + name = "xdebug-2.5.0"; - sha256 = "06ppsihw4cl8kxmywvic6wsm4ps9pvsns2vbab9ivrfyp8b6h5dy"; + sha256 = "03c9y25a3gc3kpav0cdgmhjixcaly6974hx7wgihi0wlchgavmlb"; doCheck = true; checkTarget = "test"; diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix index d093cb035392..157b72556a39 100644 --- a/pkgs/top-level/python-packages.nix +++ b/pkgs/top-level/python-packages.nix @@ -336,6 +336,8 @@ in { python-sql = callPackage ../development/python-modules/python-sql { }; + python-stdnum = callPackage ../development/python-modules/python-stdnum { }; + pytimeparse = buildPythonPackage rec { pname = "pytimeparse"; version = "1.1.6"; @@ -356,12 +358,18 @@ in { }; }; + PyWebDAV = callPackage ../development/python-modules/pywebdav { }; + pyxml = if !isPy3k then callPackage ../development/python-modules/pyxml{ } else throw "pyxml not supported for interpreter ${python.executable}"; relatorio = callPackage ../development/python-modules/relatorio { }; + pyzufall = callPackage ../development/python-modules/pyzufall { }; + rhpl = if !isPy3k then callPackage ../development/python-modules/rhpl {} else throw "rhpl not supported for interpreter ${python.executable}"; + simpleeval = callPackage ../development/python-modules/simpleeval { }; + sip = callPackage ../development/python-modules/sip { }; tables = callPackage ../development/python-modules/tables { @@ -11333,6 +11341,10 @@ in { }; }; + flake8-blind-except = callPackage ../development/python-modules/flake8-blind-except { }; + + flake8-debugger = callPackage ../development/python-modules/flake8-debugger { }; + flaky = buildPythonPackage rec { name = "flaky-${version}"; version = "3.1.0"; @@ -19304,12 +19316,11 @@ in { protobuf = self.protobuf2_6; # only required by tensorflow - protobuf3_0_0b2 = callPackage ../development/python-modules/protobuf.nix { - disabled = isPyPy || isPy3k; - doCheck = isPy3k; - protobuf = pkgs.protobuf3_0_0b2; + protobuf3_2 = callPackage ../development/python-modules/protobuf.nix { + disabled = isPyPy; + doCheck = !isPy3k; + protobuf = pkgs.protobuf3_2; }; - protobuf3_0 = callPackage ../development/python-modules/protobuf.nix { disabled = isPyPy; doCheck = isPy3k; @@ -19389,13 +19400,22 @@ in { publicsuffix = buildPythonPackage rec { name = "publicsuffix-${version}"; - version = "1.0.2"; + version = "1.1.0"; src = pkgs.fetchurl { url = "mirror://pypi/p/publicsuffix/${name}.tar.gz"; - sha256 = "f6dfcb8a33fb3ac4f09e644cd26f8af6a09d1a45a019d105c8da58e289ca0096"; + sha256 = "1adx520249z2cy7ykwjr1k190mn2888wqn9jf8qm27ly4qymjxxf"; }; + # fix the ASCII-mode LICENSE file read + # disable test_fetch and the doctests (which also invoke fetch) + patchPhase = optionalString isPy3k '' + sed -i "s/)\.read(/,encoding='utf-8'\0/" setup.py + '' + '' + sed -i -e "/def test_fetch/i\\ + \\t@unittest.skip('requires internet')" -e "/def additional_tests():/,+1d" tests.py + ''; + meta = { description = "Allows to get the public suffix of a domain name"; homepage = "http://pypi.python.org/pypi/publicsuffix/"; @@ -20164,6 +20184,8 @@ in { }; }; + pyext = callPackage ../development/python-modules/pyext { }; + pyfantom = buildPythonPackage rec { name = "pyfantom-${version}"; version = "unstable-2013-12-18"; @@ -22173,12 +22195,12 @@ in { requests_oauthlib = callPackage ../development/python-modules/requests-oauthlib.nix { }; requests_toolbelt = buildPythonPackage rec { - version = "0.6.2"; + version = "0.7.1"; name = "requests-toolbelt-${version}"; src = pkgs.fetchurl { url = "https://github.com/sigmavirus24/requests-toolbelt/archive/${version}.tar.gz"; - sha256 = "0ds1b2qx0nx9bqj1sqgr4lmanb4hpchmylp1hml1l0p71qi5ha0r"; + sha256 = "16grklnbgcfwqj3f39gw7fc9afi7xlp9gm7x8w6mi81dzhdxf50y"; }; propagatedBuildInputs = with self; [ requests2 ]; @@ -27464,13 +27486,9 @@ EOF sha256 = "1q0f3pskb09saw1qkd2s6vmk80rq5zjhq8l93dfr2x6r04r0q46j"; }; + nativeBuildInputs = with pkgs; [ wrapGAppsHook ]; propagatedBuildInputs = with self; [ pkgs.gobjectIntrospection pygobject3 pkgs.graphviz pkgs.gnome3.gtk ]; - preFixup = '' - wrapProgram "$out/bin/"* \ - --prefix GI_TYPELIB_PATH : "$GI_TYPELIB_PATH" - ''; - meta = { description = "xdot.py is an interactive viewer for graphs written in Graphviz's dot"; homepage = https://github.com/jrfonseca/xdot.py; @@ -27583,6 +27601,10 @@ EOF propagatedBuildInputs = with self; [ zope_i18nmessageid zope_schema ]; + # Trouble with implicit namespace packages on Python3 + # see https://github.com/pypa/setuptools/issues/912 + doCheck = !isPy3k; + meta = { maintainers = with maintainers; [ goibhniu ]; }; @@ -28157,7 +28179,7 @@ EOF buildInputs = with self; [ pytest pkgs.glibcLocales ]; }; - libasyncns = callPackage ../development/python-modules/libasyncns.nix { + libasyncns = callPackage ../development/python-modules/libasyncns { inherit (pkgs) libasyncns pkgconfig; }; @@ -28883,7 +28905,6 @@ EOF src = pkgs.fetchurl { url = "https://gdata-python-client.googlecode.com/files/${name}.tar.gz"; - # sha1 = "d2d9f60699611f95dd8c328691a2555e76191c0c"; sha256 = "1dpxl5hwyyqd71avpm5vkvw8fhlvf9liizmhrq9jphhrx0nx5rsn"; }; @@ -29695,21 +29716,20 @@ EOF }; parsimonious = buildPythonPackage rec { - version = "0.6.2"; + version = "0.7.0"; name = "parsimonious-${version}"; - disabled = ! isPy27; src = pkgs.fetchFromGitHub { repo = "parsimonious"; owner = "erikrose"; rev = version; - sha256 = "1wf12adzhqjibbhy2m9abfqdgbb6z97s7wydhasir70307rqf9rj"; + sha256 = "087npc8ccryrxabmqifcz56w4wd0hzmv0mc91wrbhc1sil196j0a"; }; - propagatedBuildInputs = with self; [ nose ]; + propagatedBuildInputs = with self; [ nose six ]; meta = { homepage = "https://github.com/erikrose/parsimonious"; - description = "Fast arbitrary-lookahead packrat parser written in pure Python"; + description = "Fast arbitrary-lookahead parser written in pure Python"; license = licenses.mit; }; }; @@ -31235,7 +31255,9 @@ EOF tensorflowWithoutCuda = callPackage ../development/python-modules/tensorflow { }; - tensorflowWithCuda = callPackage ../development/python-modules/tensorflow/cuda.nix { }; + tensorflowWithCuda = callPackage ../development/python-modules/tensorflow { + cudaSupport = true; + }; tflearn = buildPythonPackage rec { name = "tflearn-0.2.1"; |