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| author | Peter Simons <simons@cryp.to> | 2016-09-29 16:17:19 +0200 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2016-09-29 16:17:19 +0200 |
| commit | 39acdd24a957b5fa372fb91a391355b43eb154f7 (patch) | |
| tree | 1063f8867cda15f6c7323a14d955bde7853b670b /pkgs | |
| parent | 57df34374500a0c4f1f5c1a815db2a9b38ed433f (diff) | |
| parent | cf3a2e99ada02dff808a083da0467eff07d49136 (diff) | |
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Merge pull request #19017 from aherrmann/pr_r_modules
R modules h5 and rhdf5
Diffstat (limited to 'pkgs')
| -rw-r--r-- | pkgs/development/r-modules/default.nix | 20 |
1 files changed, 9 insertions, 11 deletions
diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index 99120a13cd05..5c05973095fd 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -266,6 +266,8 @@ let gmp = [ pkgs.gmp ]; graphscan = [ pkgs.gsl_1 ]; gsl = [ pkgs.gsl_1 ]; + h5 = [ pkgs.hdf5-cpp pkgs.which ]; + h5vc = [ pkgs.zlib.dev ]; HiCseg = [ pkgs.gsl_1 ]; iBMQ = [ pkgs.gsl_1 ]; igraph = [ pkgs.gmp ]; @@ -308,6 +310,7 @@ let rgl = [ pkgs.mesa pkgs.xlibsWrapper ]; Rglpk = [ pkgs.glpk ]; RGtk2 = [ pkgs.gtk2 ]; + rhdf5 = [ pkgs.zlib ]; Rhpc = [ pkgs.zlib pkgs.bzip2 pkgs.icu pkgs.lzma pkgs.openmpi pkgs.pcre ]; Rhtslib = [ pkgs.zlib ]; RJaCGH = [ pkgs.zlib ]; @@ -367,12 +370,12 @@ let bamsignals = [ pkgs.zlib ]; BitSeq = [ pkgs.zlib ]; DiffBind = [ pkgs.zlib ]; - ShortRead = [ pkgs.zlib ]; + ShortRead = [ pkgs.zlib.dev ]; oligo = [ pkgs.zlib ]; gmapR = [ pkgs.zlib ]; Rsubread = [ pkgs.zlib ]; - XVector = [ pkgs.zlib ]; - Rsamtools = [ pkgs.zlib ]; + XVector = [ pkgs.zlib.dev ]; + Rsamtools = [ pkgs.zlib.dev ]; rtracklayer = [ pkgs.zlib ]; affyio = [ pkgs.zlib ]; VariantAnnotation = [ pkgs.zlib ]; @@ -390,7 +393,7 @@ let qtpaint = [ pkgs.cmake ]; qtbase = [ pkgs.cmake pkgs.perl ]; gmatrix = [ pkgs.cudatoolkit ]; - RCurl = [ pkgs.curl ]; + RCurl = [ pkgs.curl.dev ]; R2SWF = [ pkgs.pkgconfig ]; rggobi = [ pkgs.pkgconfig ]; RGtk2 = [ pkgs.pkgconfig ]; @@ -1142,7 +1145,6 @@ let "proteoQC" # depends on broken package rTANDEM "PGA" # depends on broken package rTANDEM "MBESS" # depends on broken package OpenMx - "IONiseR" # depends on broken package rhdf5 "DOQTL" # depends on broken package rhdf5 "DmelSGI" # depends on broken package rhdf5 "flowDiv" # depends on broken package ncdfFlow @@ -1292,7 +1294,7 @@ let "DEGraph" # depends on broken package RCytoscape "destiny" # depends on broken package VIM "DiagTest3Grp" # depends on broken package nlopt - "diffHic" # depends on broken package rhdf5 + "diffHic" # depends on broken package edgeR "difR" # depends on broken package nlopt "DirichletMultinomial" # Build Is Broken "DistatisR" # depends on broken package nlopt @@ -1307,6 +1309,7 @@ let "easyanova" # depends on broken package nlopt "ecd" # depends on broken package polynom "edge" # depends on broken package nlopt + "edgeR" # broken url "eeptools" # depends on broken package nlopt "EffectLiteR" # depends on broken package nlopt "effects" # depends on broken package nlopt @@ -1356,7 +1359,6 @@ let "gcmr" # depends on broken package nlopt "GDAtools" # depends on broken package nlopt "gdtools" # broken build - "GENE_E" # depends on broken package rhdf5 "GENESIS" # broken build "genridge" # depends on broken package nlopt "geojsonio" # depends on broken package V8 @@ -1379,8 +1381,6 @@ let "GUIDE" # depends on broken package rpanel "GWAF" # depends on broken package nlopt "GWASTools" # broken build - "h5" # build is broken - "h5vc" # depends on broken package rhdf5 "hbsae" # depends on broken package nlopt "heplots" # depends on broken package nlopt "HiDimMaxStable" # broken build @@ -1407,7 +1407,6 @@ let "inSilicoMerging" # build is broken "INSPEcT" # depends on broken GenomicFeatures "interplot" # depends on broken arm - "IONiseR" # depends on broken rhdf5 "IsingFit" # depends on broken package nlopt "ITEMAN" # depends on broken package car "iteRates" # broken build @@ -1645,7 +1644,6 @@ let "REST" # depends on broken package nlopt "rgbif" # depends on broken package V8 "Rgnuplot" # broken build - "rhdf5" # build is broken "rjade" # depends on broken package V8 "rJPSGCS" # build is broken "rLindo" # build is broken |