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author | Peter Simons <simons@cryp.to> | 2015-01-21 17:10:16 +0100 |
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committer | Peter Simons <simons@cryp.to> | 2015-01-22 11:39:00 +0100 |
commit | 7fa0fa64503b14bc90f572907d45b2ae4e82019d (patch) | |
tree | 149dba27ff481c86d97ac1269bdcfa51ce75980c /pkgs/development/r-modules | |
parent | 0e214778dea9c176b07b94c6583ce6f49d9f7dd7 (diff) | |
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r-modules: fix evaluation and minor cleanups
Diffstat (limited to 'pkgs/development/r-modules')
-rw-r--r-- | pkgs/development/r-modules/default.nix | 26 |
1 files changed, 2 insertions, 24 deletions
diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index f3634afb0455..28671fd847f0 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -221,7 +221,6 @@ let libamtrack = [ pkgs.gsl ]; mixcat = [ pkgs.gsl ]; outbreaker = [ pkgs.gsl ]; - #pcaPA = [ pkgs.gsl ]; ridge = [ pkgs.gsl ]; simplexreg = [ pkgs.gsl ]; stsm = [ pkgs.gsl ]; @@ -283,10 +282,6 @@ let PopGenome = [ pkgs.zlib ]; RJaCGH = [ pkgs.zlib ]; RcppCNPy = [ pkgs.zlib ]; - #Rniftilib = [ pkgs.zlib ]; - #WhopGenome = [ pkgs.zlib ]; - #devEMF = [ pkgs.zlib ]; - #gdsfmt = [ pkgs.zlib ]; rbamtools = [ pkgs.zlib ]; rmatio = [ pkgs.zlib ]; RVowpalWabbit = [ pkgs.zlib pkgs.boost ]; @@ -311,7 +306,6 @@ let gmatrix = [ pkgs.cudatoolkit ]; WideLM = [ pkgs.cudatoolkit ]; RCurl = [ pkgs.curl ]; - #Rgnuplot = [ pkgs.gnuplot ]; R2SWF = [ pkgs.pkgconfig ]; RGtk2 = [ pkgs.pkgconfig ]; RProtoBuf = [ pkgs.pkgconfig ]; @@ -393,7 +387,6 @@ let "LS2Wstat" "MAR1" "MTurkR" - #"MVPARTwrap" "MareyMap" "MergeGUI" "Meth27QC" @@ -405,8 +398,6 @@ let "PBSadmb" "PBSmodelling" "PCPS" - #"PKmodelFinder" - #"PoMoS" "PopGenReport" "PredictABEL" "PrevMap" @@ -432,7 +423,6 @@ let "RcmdrPlugin_KMggplot2" "RcmdrPlugin_MA" "RcmdrPlugin_MPAStats" - #"RcmdrPlugin_NMBU" "RcmdrPlugin_ROC" "RcmdrPlugin_SCDA" "RcmdrPlugin_SLC" @@ -474,7 +464,6 @@ let "TestScorer" "VIMGUI" "VecStatGraphs3D" - #"VisuClust" "WMCapacity" "accrual" "ade4TkGUI" @@ -622,6 +611,8 @@ let # Packages which cannot be installed due to lack of dependencies or other reasons. brokenPackages = [ # sort -t '#' -k 2 + "metabolomics" # depends on broken crmn + "retistruct" # depends on broken RImageJROI "CARrampsOcl" # depends on OpenCL "rpanel" # I could not make Tcl to recognize BWidget. HELP WANTED! "alm" # jsonlite.so: undefined symbol: XXX @@ -644,7 +635,6 @@ let "rmongodb" # jsonlite.so: undefined symbol: XXX "rnoaa" # jsonlite.so: undefined symbol: XXX "RSiteCatalyst" # jsonlite.so: undefined symbol: XXX - #"RSocrata" # jsonlite.so: undefined symbol: XXX "rsunlight" # jsonlite.so: undefined symbol: XXX "rWBclimate" # jsonlite.so: undefined symbol: XXX "SGP" # jsonlite.so: undefined symbol: XXX @@ -722,7 +712,6 @@ let "gRapHD" # requires graph "msSurv" # requires graph "PairViz" # requires graph - #"ddepn" # requires graph, and genefilter "iRefR" # requires graph, and RBGL "pcalg" # requires graph, and RBGL "protiq" # requires graph, and RBGL @@ -765,7 +754,6 @@ let "metaMA" # requires limma "plmDE" # requires limma "SQDA" # requires limma - #"RPPanalyzer" # requires limma, and Biobase "PerfMeas" # requires limma, graph, and RBGL "rLindo" # requires LINDO API "magma" # requires MAGMA @@ -802,7 +790,6 @@ let "crmn" # requires pcaMethods, and Biobase "imputeLCMD" # requires pcaMethods, and impute "MEET" # requires pcaMethods, and seqLogo - #"SigTree" # requires phyloseq "saps" # requires piano, and survcomp "smart" # requires PMA "surveillance" # requires polyCub @@ -823,7 +810,6 @@ let "PKgraph" # requires rggobi "SeqGrapheR" # requires rggobi "branchLars" # requires Rgraphviz - #"gcExplorer" # requires Rgraphviz "hasseDiagram" # requires Rgraphviz "hpoPlot" # requires Rgraphviz "strum" # requires Rgraphviz @@ -891,7 +877,6 @@ let "rsig" # requires survcomp "leapp" # requires sva "ttScreening" # requires sva, and limma - #"ENA" # requires WGCNA "GOGANPA" # requires WGCNA "nettools" # requires WGCNA "rneos" # requires XMLRPC @@ -1067,13 +1052,6 @@ let qtpaint = old.qtpaint.override { hydraPlatforms = stdenv.lib.platforms.none; }; bamboo = old.bamboo.override { hydraPlatforms = stdenv.lib.platforms.none; }; - # Obsolete package that I keep around temporarily because some - # existing code depends on it. - Defaults = derive { - name="Defaults"; - version="1.1-1"; - sha256="0ikgd5mswlky327pzp09cz93bn3mq7qnybq1r64y19c2brbax00d"; - }; }; in self |