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| author | mimadrid <mimadrid@ucm.es> | 2017-09-30 19:43:19 +0200 |
|---|---|---|
| committer | mimadrid <mimadrid@ucm.es> | 2017-09-30 22:14:49 +0200 |
| commit | 25b17ae1d78e0c2d48ac4a16a70f548661570add (patch) | |
| tree | d04242fdae5a92292fbbb3953eab0dfa19361b4c /pkgs/development/libraries/science | |
| parent | 1df6cf5d1d6d4fa092252275ab82f409dd8f79fe (diff) | |
| download | nixlib-25b17ae1d78e0c2d48ac4a16a70f548661570add.tar nixlib-25b17ae1d78e0c2d48ac4a16a70f548661570add.tar.gz nixlib-25b17ae1d78e0c2d48ac4a16a70f548661570add.tar.bz2 nixlib-25b17ae1d78e0c2d48ac4a16a70f548661570add.tar.lz nixlib-25b17ae1d78e0c2d48ac4a16a70f548661570add.tar.xz nixlib-25b17ae1d78e0c2d48ac4a16a70f548661570add.tar.zst nixlib-25b17ae1d78e0c2d48ac4a16a70f548661570add.zip | |
htslib: 1.5.0 -> 1.6.0
Diffstat (limited to 'pkgs/development/libraries/science')
| -rw-r--r-- | pkgs/development/libraries/science/biology/htslib/default.nix | 16 |
1 files changed, 13 insertions, 3 deletions
diff --git a/pkgs/development/libraries/science/biology/htslib/default.nix b/pkgs/development/libraries/science/biology/htslib/default.nix index 5a08e32e7e98..a7e1c46c70a8 100644 --- a/pkgs/development/libraries/science/biology/htslib/default.nix +++ b/pkgs/development/libraries/science/biology/htslib/default.nix @@ -1,22 +1,32 @@ -{ stdenv, fetchurl, zlib, bzip2, lzma, curl }: +{ stdenv, fetchurl, zlib, bzip2, lzma, curl, perl }: stdenv.mkDerivation rec { name = "${pname}-${version}"; version = "${major}.0"; pname = "htslib"; - major = "1.5"; + major = "1.6"; src = fetchurl { url = "https://github.com/samtools/htslib/releases/download/${major}/htslib-${major}.tar.bz2"; - sha256 = "0bcjmnbwp2bib1z1bkrp95w9v2syzdwdfqww10mkb1hxlmg52ax0"; + sha256 = "1jsca3hg4rbr6iqq6imkj4lsvgl8g9768bcmny3hlff2w25vx24m"; }; + propagatedNativeBuildInputs = [ perl ]; + buildInputs = [ zlib bzip2 lzma curl ]; configureFlags = "--enable-libcurl"; # optional but strongly recommended installFlags = "prefix=$(out)"; + enableParallelBuilding = true; + + doCheck = true; + + preCheck = '' + find test -name "*.pl" -exec sed -ie 's|/usr/bin/\(env[[:space:]]\)\{0,1\}perl|${perl}/bin/perl|' {} + + ''; + meta = with stdenv.lib; { description = "A C library for reading/writing high-throughput sequencing data"; license = licenses.mit; |