diff options
| author | Orivej Desh <orivej@gmx.fr> | 2017-10-01 07:12:52 +0000 |
|---|---|---|
| committer | Orivej Desh <orivej@gmx.fr> | 2017-10-01 07:12:52 +0000 |
| commit | 0acf94bb9fa466d106e8e63884304d5ccdb37a6e (patch) | |
| tree | 5b3cd8fbf5b69add3f1321e342a4653c3c1f62f7 /pkgs/development/libraries/science | |
| parent | bebccf176effdb520f5c1ee0087caf6d10b9cd54 (diff) | |
| download | nixlib-0acf94bb9fa466d106e8e63884304d5ccdb37a6e.tar nixlib-0acf94bb9fa466d106e8e63884304d5ccdb37a6e.tar.gz nixlib-0acf94bb9fa466d106e8e63884304d5ccdb37a6e.tar.bz2 nixlib-0acf94bb9fa466d106e8e63884304d5ccdb37a6e.tar.lz nixlib-0acf94bb9fa466d106e8e63884304d5ccdb37a6e.tar.xz nixlib-0acf94bb9fa466d106e8e63884304d5ccdb37a6e.tar.zst nixlib-0acf94bb9fa466d106e8e63884304d5ccdb37a6e.zip | |
htslib: fix up
Diffstat (limited to 'pkgs/development/libraries/science')
| -rw-r--r-- | pkgs/development/libraries/science/biology/htslib/default.nix | 17 |
1 files changed, 8 insertions, 9 deletions
diff --git a/pkgs/development/libraries/science/biology/htslib/default.nix b/pkgs/development/libraries/science/biology/htslib/default.nix index a7e1c46c70a8..b3c6d9f26d47 100644 --- a/pkgs/development/libraries/science/biology/htslib/default.nix +++ b/pkgs/development/libraries/science/biology/htslib/default.nix @@ -2,16 +2,16 @@ stdenv.mkDerivation rec { name = "${pname}-${version}"; - version = "${major}.0"; pname = "htslib"; - major = "1.6"; + version = "1.6"; src = fetchurl { - url = "https://github.com/samtools/htslib/releases/download/${major}/htslib-${major}.tar.bz2"; + url = "https://github.com/samtools/htslib/releases/download/${version}/${name}.tar.bz2"; sha256 = "1jsca3hg4rbr6iqq6imkj4lsvgl8g9768bcmny3hlff2w25vx24m"; }; - propagatedNativeBuildInputs = [ perl ]; + # perl is only used during the check phase. + nativeBuildInputs = [ perl ]; buildInputs = [ zlib bzip2 lzma curl ]; @@ -19,14 +19,14 @@ stdenv.mkDerivation rec { installFlags = "prefix=$(out)"; + preCheck = '' + patchShebangs test/ + ''; + enableParallelBuilding = true; doCheck = true; - preCheck = '' - find test -name "*.pl" -exec sed -ie 's|/usr/bin/\(env[[:space:]]\)\{0,1\}perl|${perl}/bin/perl|' {} + - ''; - meta = with stdenv.lib; { description = "A C library for reading/writing high-throughput sequencing data"; license = licenses.mit; @@ -35,4 +35,3 @@ stdenv.mkDerivation rec { maintainers = [ maintainers.mimadrid ]; }; } - |