diff options
| author | Orivej Desh <orivej@gmx.fr> | 2017-10-02 01:07:11 +0000 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2017-10-02 01:07:11 +0000 |
| commit | 047c576353bce80a4c418addc84f1adf96e2cf0e (patch) | |
| tree | b7b246deb3fa83c49c90a825848cd65ffbc910f4 /pkgs/development/libraries/science | |
| parent | d2bd0061666d05f9ec3f05edacad0148b4b2aa15 (diff) | |
| parent | d73bd7f50ab09ad511851f9b2ee812cc17136edf (diff) | |
| download | nixlib-047c576353bce80a4c418addc84f1adf96e2cf0e.tar nixlib-047c576353bce80a4c418addc84f1adf96e2cf0e.tar.gz nixlib-047c576353bce80a4c418addc84f1adf96e2cf0e.tar.bz2 nixlib-047c576353bce80a4c418addc84f1adf96e2cf0e.tar.lz nixlib-047c576353bce80a4c418addc84f1adf96e2cf0e.tar.xz nixlib-047c576353bce80a4c418addc84f1adf96e2cf0e.tar.zst nixlib-047c576353bce80a4c418addc84f1adf96e2cf0e.zip | |
Merge pull request #29963 from mimadrid/update/samtools-1.6.0
samtools: 1.5.0 -> 1.6.0
Diffstat (limited to 'pkgs/development/libraries/science')
| -rw-r--r-- | pkgs/development/libraries/science/biology/htslib/default.nix | 21 |
1 files changed, 15 insertions, 6 deletions
diff --git a/pkgs/development/libraries/science/biology/htslib/default.nix b/pkgs/development/libraries/science/biology/htslib/default.nix index 5a08e32e7e98..b3c6d9f26d47 100644 --- a/pkgs/development/libraries/science/biology/htslib/default.nix +++ b/pkgs/development/libraries/science/biology/htslib/default.nix @@ -1,22 +1,32 @@ -{ stdenv, fetchurl, zlib, bzip2, lzma, curl }: +{ stdenv, fetchurl, zlib, bzip2, lzma, curl, perl }: stdenv.mkDerivation rec { name = "${pname}-${version}"; - version = "${major}.0"; pname = "htslib"; - major = "1.5"; + version = "1.6"; src = fetchurl { - url = "https://github.com/samtools/htslib/releases/download/${major}/htslib-${major}.tar.bz2"; - sha256 = "0bcjmnbwp2bib1z1bkrp95w9v2syzdwdfqww10mkb1hxlmg52ax0"; + url = "https://github.com/samtools/htslib/releases/download/${version}/${name}.tar.bz2"; + sha256 = "1jsca3hg4rbr6iqq6imkj4lsvgl8g9768bcmny3hlff2w25vx24m"; }; + # perl is only used during the check phase. + nativeBuildInputs = [ perl ]; + buildInputs = [ zlib bzip2 lzma curl ]; configureFlags = "--enable-libcurl"; # optional but strongly recommended installFlags = "prefix=$(out)"; + preCheck = '' + patchShebangs test/ + ''; + + enableParallelBuilding = true; + + doCheck = true; + meta = with stdenv.lib; { description = "A C library for reading/writing high-throughput sequencing data"; license = licenses.mit; @@ -25,4 +35,3 @@ stdenv.mkDerivation rec { maintainers = [ maintainers.mimadrid ]; }; } - |