julia_04: remove

5 files changed, 64 insertions, 318 deletions

diff --git a/pkgs/development/compilers/julia/0.6.nix b/pkgs/development/compilers/julia/0.6.nix
deleted file mode 100644
index fcf486b3b41a..000000000000
--- a/pkgs/development/compilers/julia/0.6.nix
+++ /dev/null
@@ -1,203 +0,0 @@
-{ stdenv, fetchurl, fetchzip
-# build tools
-, gfortran, m4, makeWrapper, patchelf, perl, which, python2
-, paxctl
-# libjulia dependencies
-, libunwind, readline, utf8proc, zlib
-, llvm
-# standard library dependencies
-, curl, fftwSinglePrec, fftw, gmp, libgit2, mpfr, openlibm, openspecfun, pcre2
-# linear algebra
-, openblas, arpack, suitesparse
-# Darwin frameworks
-, CoreServices, ApplicationServices
-}:
-
-with stdenv.lib;
-
-# All dependencies must use the same OpenBLAS.
-let
-  arpack_ = arpack;
-  suitesparse_ = suitesparse;
-in
-let
-  arpack = arpack_.override { inherit openblas; };
-  suitesparse = suitesparse_.override { inherit openblas; };
-in
-
-let
-  dsfmtVersion = "2.2.3";
-  dsfmt = fetchurl {
-    url = "http://www.math.sci.hiroshima-u.ac.jp/~m-mat/MT/SFMT/dSFMT-src-${dsfmtVersion}.tar.gz";
-    sha256 = "03kaqbjbi6viz0n33dk5jlf6ayxqlsq4804n7kwkndiga9s4hd42";
-  };
-
-  libuvVersion = "d8ab1c6a33e77bf155facb54215dd8798e13825d";
-  libuv = fetchurl {
-    url = "https://api.github.com/repos/JuliaLang/libuv/tarball/${libuvVersion}";
-    sha256 = "0q5ahc9dzca2yc6cjbhpfi9nwc4yhhjbgxgsychksn13d24gv7ba";
-  };
-
-  rmathVersion = "0.1";
-  rmath-julia = fetchurl {
-    url = "https://api.github.com/repos/JuliaLang/Rmath-julia/tarball/v${rmathVersion}";
-    sha256 = "1qyps217175qhid46l8f5i1v8i82slgp23ia63x2hzxwfmx8617p";
-  };
-
-  virtualenvVersion = "15.0.0";
-  virtualenv = fetchurl {
-    url = "mirror://pypi/v/virtualenv/virtualenv-${virtualenvVersion}.tar.gz";
-    sha256 = "06fw4liazpx5vf3am45q2pdiwrv0id7ckv7n6zmpml29x6vkzmkh";
-  };
-
-  majorVersion = "0";
-  minorVersion = "6";
-  maintenanceVersion = "4";
-  version = "${majorVersion}.${minorVersion}.${maintenanceVersion}";
-in
-
-stdenv.mkDerivation rec {
-  pname = "julia";
-  inherit version;
-  name = "${pname}-${version}";
-
-  src = fetchzip {
-    url = "https://github.com/JuliaLang/${pname}/releases/download/v${version}/${name}.tar.gz";
-    sha256 = "09axkkj914al7lzvcvhb33hz5wp083lk18llsvrn622fqhmyqabl";
-  };
-  prePatch = ''
-    mkdir deps/srccache
-    cp "${dsfmt}" "./deps/srccache/dsfmt-${dsfmtVersion}.tar.gz"
-    cp "${rmath-julia}" "./deps/srccache/Rmath-julia-${rmathVersion}.tar.gz"
-    cp "${libuv}" "./deps/srccache/libuv-${libuvVersion}.tar.gz"
-    cp "${virtualenv}" "./deps/srccache/virtualenv-${virtualenvVersion}.tar.gz"
-  '';
-
-  patches = [
-    ./0001.1-use-system-utf8proc.patch
-    ./0002-use-system-suitesparse.patch
-  ] ++ stdenv.lib.optional stdenv.needsPax ./0004-hardened.patch;
-
-  postPatch = ''
-    patchShebangs . contrib
-    for i in backtrace replutil cmdlineargs compile; do
-      mv test/$i.jl{,.off}
-      touch test/$i.jl
-    done
-
-    sed -e 's/Invalid Content-Type:/invalid Content-Type:/g' -i test/libgit2.jl
-    sed -e 's/Failed to resolve /failed to resolve /g' -i test/libgit2.jl
-  '';
-
-  buildInputs = [
-    arpack fftw fftwSinglePrec gmp libgit2 libunwind mpfr
-    pcre2.dev openblas openlibm openspecfun readline suitesparse utf8proc
-    zlib llvm
-  ]
-  ++ stdenv.lib.optionals stdenv.isDarwin [CoreServices ApplicationServices]
-  ;
-
-  nativeBuildInputs = [ curl gfortran m4 makeWrapper patchelf perl python2 which ]
-    ++ stdenv.lib.optional stdenv.needsPax paxctl;
-
-  makeFlags =
-    let
-      arch = head (splitString "-" stdenv.system);
-      march = { "x86_64" = "x86-64"; "i686" = "pentium4"; }."${arch}"
-              or (throw "unsupported architecture: ${arch}");
-      # Julia requires Pentium 4 (SSE2) or better
-      cpuTarget = { "x86_64" = "x86-64"; "i686" = "pentium4"; }."${arch}"
-                  or (throw "unsupported architecture: ${arch}");
-    in [
-      "ARCH=${arch}"
-      "MARCH=${march}"
-      "JULIA_CPU_TARGET=${cpuTarget}"
-      "PREFIX=$(out)"
-      "prefix=$(out)"
-      "SHELL=${stdenv.shell}"
-
-      "USE_SYSTEM_BLAS=1"
-      "USE_BLAS64=${if openblas.blas64 then "1" else "0"}"
-      "LIBBLAS=-lopenblas"
-      "LIBBLASNAME=libopenblas"
-
-      "USE_SYSTEM_LAPACK=1"
-      "LIBLAPACK=-lopenblas"
-      "LIBLAPACKNAME=libopenblas"
-
-      "USE_SYSTEM_SUITESPARSE=1"
-      "SUITESPARSE_LIB=-lsuitesparse"
-      "SUITESPARSE_INC=-I${suitesparse}/include"
-
-      "USE_SYSTEM_ARPACK=1"
-      "USE_SYSTEM_FFTW=1"
-      "USE_SYSTEM_GMP=1"
-      "USE_SYSTEM_LIBGIT2=1"
-      "USE_SYSTEM_LIBUNWIND=1"
-
-      "USE_SYSTEM_LLVM=1"
-      "LLVM_VER=3.9.1"
-
-      "USE_SYSTEM_MPFR=1"
-      "USE_SYSTEM_OPENLIBM=1"
-      "USE_SYSTEM_OPENSPECFUN=1"
-      "USE_SYSTEM_PATCHELF=1"
-      "USE_SYSTEM_PCRE=1"
-      "PCRE_CONFIG=${pcre2.dev}/bin/pcre2-config"
-      "PCRE_INCL_PATH=${pcre2.dev}/include/pcre2.h"
-      "USE_SYSTEM_READLINE=1"
-      "USE_SYSTEM_UTF8PROC=1"
-      "USE_SYSTEM_ZLIB=1"
-    ];
-
-  NIX_CFLAGS_COMPILE = [ "-fPIC" ];
-
-  LD_LIBRARY_PATH = makeLibraryPath [
-    arpack fftw fftwSinglePrec gmp libgit2 mpfr openblas openlibm
-    openspecfun pcre2 suitesparse llvm
-  ];
-
-  dontStrip = true;
-  dontPatchELF = true;
-
-  enableParallelBuilding = true;
-
-  doCheck = !stdenv.isDarwin;
-  checkTarget = "testall";
-  # Julia's tests require read/write access to $HOME
-  preCheck = ''
-    export HOME="$NIX_BUILD_TOP"
-  '';
-
-  preBuild = ''
-    sed -e '/^install:/s@[^ ]*/doc/[^ ]*@@' -i Makefile
-    sed -e '/[$](DESTDIR)[$](docdir)/d' -i Makefile
-    export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}
-  '';
-
-  postInstall = ''
-    # Symlink shared libraries from LD_LIBRARY_PATH into lib/julia,
-    # as using a wrapper with LD_LIBRARY_PATH causes segmentation
-    # faults when program returns an error:
-    #   $ julia -e 'throw(Error())'
-    find $(echo $LD_LIBRARY_PATH | sed 's|:| |g') -maxdepth 1 -name '*.${if stdenv.isDarwin then "dylib" else "so"}*' | while read lib; do
-      if [[ ! -e $out/lib/julia/$(basename $lib) ]]; then
-        ln -sv $lib $out/lib/julia/$(basename $lib)
-      fi
-    done
-  '';
-
-  passthru = {
-    inherit majorVersion minorVersion maintenanceVersion;
-    site = "share/julia/site/v${majorVersion}.${minorVersion}";
-  };
-
-  meta = {
-    description = "High-level performance-oriented dynamical language for technical computing";
-    homepage = https://julialang.org/;
-    license = stdenv.lib.licenses.mit;
-    maintainers = with stdenv.lib.maintainers; [ raskin ];
-    platforms = [ "i686-linux" "x86_64-linux" "x86_64-darwin" ];
-    broken = stdenv.isi686;
-  };
-}
diff --git a/pkgs/development/compilers/julia/0001-use-system-utf8proc.patch b/pkgs/development/compilers/julia/0001-use-system-utf8proc.patch
deleted file mode 100644
index b93654a88965..000000000000
--- a/pkgs/development/compilers/julia/0001-use-system-utf8proc.patch
+++ /dev/null
@@ -1,29 +0,0 @@
-From 54a66b5728ec98f44a1768f064509be4fd3f2ef6 Mon Sep 17 00:00:00 2001
-From: Thomas Tuegel <ttuegel@gmail.com>
-Date: Sat, 10 Oct 2015 13:09:48 -0500
-Subject: [PATCH 1/3] use system utf8proc
-
----
- src/flisp/Makefile | 6 +++---
- 1 file changed, 3 insertions(+), 3 deletions(-)
-
-diff --git a/src/flisp/Makefile b/src/flisp/Makefile
-index bec8624..5437b5c 100644
---- a/src/flisp/Makefile
-+++ b/src/flisp/Makefile
-@@ -24,9 +24,9 @@ DOBJS = $(SRCS:%.c=$(BUILDDIR)/%.dbg.obj)
- LLTDIR = ../support
- LLT_release = $(BUILDDIR)/$(LLTDIR)/libsupport.a
- LLT_debug = $(BUILDDIR)/$(LLTDIR)/libsupport-debug.a
--LIBFILES_release = $(LLT_release) $(LIBUV) $(LIBUTF8PROC)
--LIBFILES_debug = $(LLT_debug) $(LIBUV) $(LIBUTF8PROC)
--LIBS =
-+LIBFILES_release = $(LLT_release) $(LIBUV)
-+LIBFILES_debug = $(LLT_debug) $(LIBUV)
-+LIBS = $(LIBUTF8PROC)
- ifneq ($(OS),WINNT)
- LIBS += -lpthread
- endif
--- 
-2.5.2
-
diff --git a/pkgs/development/compilers/julia/0003-no-ldconfig.patch b/pkgs/development/compilers/julia/0003-no-ldconfig.patch
deleted file mode 100644
index 06d1a57ed627..000000000000
--- a/pkgs/development/compilers/julia/0003-no-ldconfig.patch
+++ /dev/null
@@ -1,29 +0,0 @@
-From 8802fe583eda93a928739cb3bc3517e19d1a6fa1 Mon Sep 17 00:00:00 2001
-From: Thomas Tuegel <ttuegel@gmail.com>
-Date: Sun, 11 Oct 2015 07:19:42 -0500
-Subject: [PATCH 3/3] no ldconfig
-
----
- src/ccall.cpp | 6 +-----
- 1 file changed, 1 insertion(+), 5 deletions(-)
-
-diff --git a/src/ccall.cpp b/src/ccall.cpp
-index 22015ff..2821192 100644
---- a/src/ccall.cpp
-+++ b/src/ccall.cpp
-@@ -13,11 +13,7 @@ extern "C" DLLEXPORT void jl_read_sonames(void)
- {
-     char *line=NULL;
-     size_t sz=0;
--#if defined(__linux__)
--    FILE *ldc = popen("/sbin/ldconfig -p", "r");
--#else
--    FILE *ldc = popen("/sbin/ldconfig -r", "r");
--#endif
-+    FILE *ldc = popen("true", "r");
-     if (ldc == NULL) return; // ignore errors in running ldconfig (other than whatever might have been printed to stderr)
- 
-     while (!feof(ldc)) {
--- 
-2.5.2
-
diff --git a/pkgs/development/compilers/julia/0004-hardened-0.4.7.patch b/pkgs/development/compilers/julia/0004-hardened-0.4.7.patch
deleted file mode 100644
index 1950cd7836a2..000000000000
--- a/pkgs/development/compilers/julia/0004-hardened-0.4.7.patch
+++ /dev/null
@@ -1,25 +0,0 @@
-From 0bdbe60325a22202f8e250a9578407648a0d29b9 Mon Sep 17 00:00:00 2001
-From: Will Dietz <w@wdtz.org>
-Date: Wed, 1 Feb 2017 06:09:49 -0600
-Subject: [PATCH] Set pax flags on julia binaries to disable memory protection.
-
----
- Makefile | 2 ++
- 1 file changed, 2 insertions(+)
-
-diff --git a/Makefile b/Makefile
-index 8d45a1baa..91ea33b21 100644
---- a/Makefile
-+++ b/Makefile
-@@ -61,6 +61,8 @@ julia-src-release julia-src-debug : julia-src-% : julia-deps
- 
- julia-ui-release julia-ui-debug : julia-ui-% : julia-src-%
- 	@$(MAKE) $(QUIET_MAKE) -C ui julia-$*
-+	@echo "setting PaX flags on $(JULIA_EXECUTABLE_$*)"
-+	@paxctl -czexm $(JULIA_EXECUTABLE_$*)
- 
- julia-inference : julia-base julia-ui-$(JULIA_BUILD_MODE) $(build_prefix)/.examples
- 	@$(MAKE) $(QUIET_MAKE) $(build_private_libdir)/inference.ji JULIA_BUILD_MODE=$(JULIA_BUILD_MODE)
--- 
-2.11.0
-
diff --git a/pkgs/development/compilers/julia/default.nix b/pkgs/development/compilers/julia/default.nix
index a504dc2ea463..84fdf8f9786d 100644
--- a/pkgs/development/compilers/julia/default.nix
+++ b/pkgs/development/compilers/julia/default.nix
@@ -1,8 +1,9 @@
-{ stdenv, fetchurl
+{ stdenv, fetchurl, fetchzip
 # build tools
 , gfortran, m4, makeWrapper, patchelf, perl, which, python2, paxctl
 # libjulia dependencies
-, libunwind, llvm, readline, utf8proc, zlib
+, libunwind, readline, utf8proc, zlib
+, llvm
 # standard library dependencies
 , curl, fftwSinglePrec, fftw, gmp, libgit2, mpfr, openlibm, openspecfun, pcre2
 # linear algebra
@@ -21,9 +22,6 @@ in
 let
   arpack = arpack_.override { inherit openblas; };
   suitesparse = suitesparse_.override { inherit openblas; };
-  llvmShared = if stdenv.isDarwin
-               then llvm.override { enableSharedLibraries = true; }
-               else llvm;
 in
 
 let
@@ -33,10 +31,10 @@ let
     sha256 = "03kaqbjbi6viz0n33dk5jlf6ayxqlsq4804n7kwkndiga9s4hd42";
   };
 
-  libuvVersion = "efb40768b7c7bd9f173a7868f74b92b1c5a61a0e";
+  libuvVersion = "d8ab1c6a33e77bf155facb54215dd8798e13825d";
   libuv = fetchurl {
     url = "https://api.github.com/repos/JuliaLang/libuv/tarball/${libuvVersion}";
-    sha256 = "1znkxyv1cy9pjap7afypipzsn04533ni3pqjd191fdgw2sv9cal7";
+    sha256 = "0q5ahc9dzca2yc6cjbhpfi9nwc4yhhjbgxgsychksn13d24gv7ba";
   };
 
   rmathVersion = "0.1";
@@ -44,40 +42,59 @@ let
     url = "https://api.github.com/repos/JuliaLang/Rmath-julia/tarball/v${rmathVersion}";
     sha256 = "1qyps217175qhid46l8f5i1v8i82slgp23ia63x2hzxwfmx8617p";
   };
+
+  virtualenvVersion = "15.0.0";
+  virtualenv = fetchurl {
+    url = "mirror://pypi/v/virtualenv/virtualenv-${virtualenvVersion}.tar.gz";
+    sha256 = "06fw4liazpx5vf3am45q2pdiwrv0id7ckv7n6zmpml29x6vkzmkh";
+  };
+
+  majorVersion = "0";
+  minorVersion = "6";
+  maintenanceVersion = "4";
+  version = "${majorVersion}.${minorVersion}.${maintenanceVersion}";
 in
 
 stdenv.mkDerivation rec {
   pname = "julia";
-  version = "0.4.7";
+  inherit version;
   name = "${pname}-${version}";
 
-  src = fetchurl {
+  src = fetchzip {
     url = "https://github.com/JuliaLang/${pname}/releases/download/v${version}/${name}.tar.gz";
-    sha256 = "09f531jhs8pyd1xng5c26x994w7q0sxxr28mr3qfw9wpkbmsc2pf";
+    sha256 = "09axkkj914al7lzvcvhb33hz5wp083lk18llsvrn622fqhmyqabl";
   };
-
   prePatch = ''
-    cp "${dsfmt}" "./deps/dsfmt-${dsfmtVersion}.tar.gz"
-    cp "${rmath-julia}" "./deps/Rmath-julia-${rmathVersion}.tar.gz"
-    cp "${libuv}" "./deps/libuv-${libuvVersion}.tar.gz"
+    mkdir deps/srccache
+    cp "${dsfmt}" "./deps/srccache/dsfmt-${dsfmtVersion}.tar.gz"
+    cp "${rmath-julia}" "./deps/srccache/Rmath-julia-${rmathVersion}.tar.gz"
+    cp "${libuv}" "./deps/srccache/libuv-${libuvVersion}.tar.gz"
+    cp "${virtualenv}" "./deps/srccache/virtualenv-${virtualenvVersion}.tar.gz"
   '';
 
   patches = [
-    ./0001-use-system-utf8proc.patch
+    ./0001.1-use-system-utf8proc.patch
     ./0002-use-system-suitesparse.patch
-    ./0003-no-ldconfig.patch
-  ] ++ stdenv.lib.optional stdenv.needsPax ./0004-hardened-0.4.7.patch;
+  ] ++ stdenv.lib.optional stdenv.needsPax ./0004-hardened.patch;
 
   postPatch = ''
     patchShebangs . contrib
+    for i in backtrace replutil cmdlineargs compile; do
+      mv test/$i.jl{,.off}
+      touch test/$i.jl
+    done
+
+    sed -e 's/Invalid Content-Type:/invalid Content-Type:/g' -i test/libgit2.jl
+    sed -e 's/Failed to resolve /failed to resolve /g' -i test/libgit2.jl
   '';
 
   buildInputs = [
-    arpack fftw fftwSinglePrec gmp libgit2 libunwind llvmShared mpfr
+    arpack fftw fftwSinglePrec gmp libgit2 libunwind mpfr
     pcre2.dev openblas openlibm openspecfun readline suitesparse utf8proc
-    zlib
-  ] ++
-    stdenv.lib.optionals stdenv.isDarwin [CoreServices ApplicationServices] ;
+    zlib llvm
+  ]
+  ++ stdenv.lib.optionals stdenv.isDarwin [CoreServices ApplicationServices]
+  ;
 
   nativeBuildInputs = [ curl gfortran m4 makeWrapper patchelf perl python2 which ]
     ++ stdenv.lib.optional stdenv.needsPax paxctl;
@@ -85,7 +102,7 @@ stdenv.mkDerivation rec {
   makeFlags =
     let
       arch = head (splitString "-" stdenv.system);
-      march = { "x86_64" = "x86-64"; "i686" = "i686"; }."${arch}"
+      march = { "x86_64" = "x86-64"; "i686" = "pentium4"; }."${arch}"
               or (throw "unsupported architecture: ${arch}");
       # Julia requires Pentium 4 (SSE2) or better
       cpuTarget = { "x86_64" = "x86-64"; "i686" = "pentium4"; }."${arch}"
@@ -116,7 +133,10 @@ stdenv.mkDerivation rec {
       "USE_SYSTEM_GMP=1"
       "USE_SYSTEM_LIBGIT2=1"
       "USE_SYSTEM_LIBUNWIND=1"
+
       "USE_SYSTEM_LLVM=1"
+      "LLVM_VER=3.9.1"
+
       "USE_SYSTEM_MPFR=1"
       "USE_SYSTEM_OPENLIBM=1"
       "USE_SYSTEM_OPENSPECFUN=1"
@@ -133,38 +153,50 @@ stdenv.mkDerivation rec {
 
   LD_LIBRARY_PATH = makeLibraryPath [
     arpack fftw fftwSinglePrec gmp libgit2 mpfr openblas openlibm
-    openspecfun pcre2 suitesparse
+    openspecfun pcre2 suitesparse llvm
   ];
 
-  NIX_LDFLAGS = optionalString stdenv.isDarwin "-rpath ${llvmShared}/lib";
-
   dontStrip = true;
   dontPatchELF = true;
 
   enableParallelBuilding = true;
 
-  doCheck = true;
+  doCheck = !stdenv.isDarwin;
   checkTarget = "testall";
   # Julia's tests require read/write access to $HOME
   preCheck = ''
     export HOME="$NIX_BUILD_TOP"
   '';
 
+  preBuild = ''
+    sed -e '/^install:/s@[^ ]*/doc/[^ ]*@@' -i Makefile
+    sed -e '/[$](DESTDIR)[$](docdir)/d' -i Makefile
+    export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}
+  '';
+
   postInstall = ''
-    for prog in "$out/bin/julia" "$out/bin/julia-debug"; do
-        wrapProgram "$prog" \
-            --prefix LD_LIBRARY_PATH : "$LD_LIBRARY_PATH" \
-            --prefix PATH : "${stdenv.lib.makeBinPath [ curl ]}"
+    # Symlink shared libraries from LD_LIBRARY_PATH into lib/julia,
+    # as using a wrapper with LD_LIBRARY_PATH causes segmentation
+    # faults when program returns an error:
+    #   $ julia -e 'throw(Error())'
+    find $(echo $LD_LIBRARY_PATH | sed 's|:| |g') -maxdepth 1 -name '*.${if stdenv.isDarwin then "dylib" else "so"}*' | while read lib; do
+      if [[ ! -e $out/lib/julia/$(basename $lib) ]]; then
+        ln -sv $lib $out/lib/julia/$(basename $lib)
+      fi
     done
   '';
 
+  passthru = {
+    inherit majorVersion minorVersion maintenanceVersion;
+    site = "share/julia/site/v${majorVersion}.${minorVersion}";
+  };
+
   meta = {
     description = "High-level performance-oriented dynamical language for technical computing";
     homepage = https://julialang.org/;
     license = stdenv.lib.licenses.mit;
     maintainers = with stdenv.lib.maintainers; [ raskin ];
     platforms = [ "i686-linux" "x86_64-linux" "x86_64-darwin" ];
-    #broken = stdenv.isi686;
-    broken = true; # 2018-04-10
+    broken = stdenv.isi686;
   };
 }