Merge pull request #34199 from arcadio/kallisto

kallisto: init at 0.43.1

1 files changed, 25 insertions, 0 deletions

diff --git a/pkgs/applications/science/biology/kallisto/default.nix b/pkgs/applications/science/biology/kallisto/default.nix
new file mode 100644
index 000000000000..d80ffea9a780
--- /dev/null
+++ b/pkgs/applications/science/biology/kallisto/default.nix
@@ -0,0 +1,25 @@
+{ stdenv, fetchFromGitHub, cmake, hdf5, zlib }:
+
+stdenv.mkDerivation rec {
+  name = "kallisto-${version}";
+  version = "0.43.1";
+
+  src = fetchFromGitHub {
+    repo = "kallisto";
+    owner = "pachterlab";
+    rev = "v${version}";
+    sha256 = "04697pf7jvy7vw126s1rn09q4iab9223jvb1nb0jn7ilwkq7pgwz";
+  };
+
+  nativeBuildInputs = [ cmake ];
+  
+  buildInputs = [ hdf5 zlib ];
+
+  meta = with stdenv.lib; {
+    description = "kallisto is a program for quantifying abundances of transcripts from RNA-Seq data";
+    homepage = https://pachterlab.github.io/kallisto;
+    license = licenses.bsd2;
+    platforms = platforms.linux;
+    maintainers = [ maintainers.arcadio ];
+  };
+}