diff options
author | Sebastian Meric de Bellefon <sebastian.meric.de.bellefon@umontreal.ca> | 2018-08-29 10:27:05 -0400 |
---|---|---|
committer | Sebastian de Bellefon <arnaudpourseb@gmail.com> | 2018-09-01 09:18:19 -0400 |
commit | 93ce77af405b0be6a6f5f5108b8e59cbac97249d (patch) | |
tree | 1980fab526e07923f3edc60a68f96e53644d5fae /pkgs/applications | |
parent | c49e507bbc3286827d4610b08f1ccc18463e25b0 (diff) | |
download | nixlib-93ce77af405b0be6a6f5f5108b8e59cbac97249d.tar nixlib-93ce77af405b0be6a6f5f5108b8e59cbac97249d.tar.gz nixlib-93ce77af405b0be6a6f5f5108b8e59cbac97249d.tar.bz2 nixlib-93ce77af405b0be6a6f5f5108b8e59cbac97249d.tar.lz nixlib-93ce77af405b0be6a6f5f5108b8e59cbac97249d.tar.xz nixlib-93ce77af405b0be6a6f5f5108b8e59cbac97249d.tar.zst nixlib-93ce77af405b0be6a6f5f5108b8e59cbac97249d.zip |
python.pkgs.snakemake: init at 5.2.2
Diffstat (limited to 'pkgs/applications')
-rw-r--r-- | pkgs/applications/science/misc/snakemake/default.nix | 41 |
1 files changed, 41 insertions, 0 deletions
diff --git a/pkgs/applications/science/misc/snakemake/default.nix b/pkgs/applications/science/misc/snakemake/default.nix new file mode 100644 index 000000000000..6b0570814f2b --- /dev/null +++ b/pkgs/applications/science/misc/snakemake/default.nix @@ -0,0 +1,41 @@ +{ + stdenv +, python +}: + +python.buildPythonPackage rec { + pname = "snakemake"; + version = "5.2.2"; + + propagatedBuildInputs = with python; [ + appdirs + ConfigArgParse + datrie + docutils + jsonschema + pyyaml + ratelimiter + requests + wrapt + ]; + + src = python.fetchPypi { + inherit pname version; + sha256 = "adffe7e24b4a613a9e8bf0a2a320b3cea236d86afb9132bb0bbbc08b8e35a3a3"; + }; + + doCheck = false; # Tests depend on Google Cloud credentials at ${HOME}/gcloud-service-key.json + + meta = with stdenv.lib; { + homepage = http://snakemake.bitbucket.io; + license = licenses.mit; + description = "Python-based execution environment for make-like workflows"; + longDescription = '' + Snakemake is a workflow management system that aims to reduce the complexity of + creating workflows by providing a fast and comfortable execution environment, + together with a clean and readable specification language in Python style. Snakemake + workflows are essentially Python scripts extended by declarative code to define + rules. Rules describe how to create output files from input files. + ''; + }; +} |