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author | José Romildo Malaquias <malaquias@gmail.com> | 2017-11-02 00:29:12 -0200 |
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committer | GitHub <noreply@github.com> | 2017-11-02 00:29:12 -0200 |
commit | c07835a11bedd070aef2d2e86e7d03d579b560f3 (patch) | |
tree | 8b7f11859dd719c4d6dd7cfd83da5c541d5a6454 /pkgs/applications/science | |
parent | d3763a7164e7c8b1b269add0d0ed1e8f316bbdc9 (diff) | |
parent | bb6257bd3a22f79b00350966e9de0786cae26f5b (diff) | |
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Merge branch 'master' into upd.lxqt
Diffstat (limited to 'pkgs/applications/science')
-rw-r--r-- | pkgs/applications/science/machine-learning/shogun/default.nix | 51 | ||||
-rw-r--r-- | pkgs/applications/science/math/colpack/default.nix | 31 | ||||
-rw-r--r-- | pkgs/applications/science/math/pari/default.nix | 27 |
3 files changed, 100 insertions, 9 deletions
diff --git a/pkgs/applications/science/machine-learning/shogun/default.nix b/pkgs/applications/science/machine-learning/shogun/default.nix new file mode 100644 index 000000000000..9d736694cbdc --- /dev/null +++ b/pkgs/applications/science/machine-learning/shogun/default.nix @@ -0,0 +1,51 @@ +{ stdenv, lib, fetchFromGitHub, ccache, cmake, ctags, swig +# data, compression +, bzip2, curl, hdf5, json_c, lzma, lzo, protobuf, snappy +# maths +, blas, eigen, nlopt, lp_solve, colpack +# libraries +, libarchive, liblapack, libxml2 +# extra support +, pythonSupport ? true, pythonPackages ? null +, opencvSupport ? false, opencv ? null +}: + +assert pythonSupport -> pythonPackages != null; +assert opencvSupport -> opencv != null; + +stdenv.mkDerivation rec { + + pname = "shogun"; + version = "6.0.0"; + name = pname + "-" + version; + + src = fetchFromGitHub { + owner = pname + "-toolbox"; + repo = pname; + rev = pname + "_" + version; + sha256 = "0f2zwzvn5apvwypkfkq371xp7c5bdb4g1fwqfh8c2d57ysjxhmgf"; + fetchSubmodules = true; + }; + + CCACHE_DIR=".ccache"; + + buildInputs = with lib; [ + blas bzip2 ccache cmake colpack curl ctags eigen hdf5 json_c lp_solve lzma lzo + protobuf nlopt snappy swig (libarchive.dev) liblapack libxml2 + ] + ++ optionals (pythonSupport) (with pythonPackages; [ python ply numpy ]) + ++ optional (opencvSupport) opencv; + + cmakeFlags = with lib; [] + ++ (optional (pythonSupport) "-DPythonModular=ON") + ++ (optional (opencvSupport) "-DOpenCV=ON") + ; + + meta = with stdenv.lib; { + description = "A toolbox which offers a wide range of efficient and unified machine learning methods"; + homepage = "http://shogun-toolbox.org/"; + license = licenses.gpl3; + maintainers = with maintainers; [ edwtjo ]; + }; + +} diff --git a/pkgs/applications/science/math/colpack/default.nix b/pkgs/applications/science/math/colpack/default.nix new file mode 100644 index 000000000000..29785363b048 --- /dev/null +++ b/pkgs/applications/science/math/colpack/default.nix @@ -0,0 +1,31 @@ +{ stdenv, lib, fetchFromGitHub, autoconf, automake, libtool, gettext }: + +stdenv.mkDerivation rec { + + pname = "ColPack"; + version = "1.0.10"; + name = pname + "-" + version; + + src = fetchFromGitHub { + owner = "CSCsw"; + repo = pname; + rev = "v" + version; + sha256 = "1p05vry940mrjp6236c0z83yizmw9pk6ly2lb7d8rpb7j9h03glr"; + }; + + buildInputs = [ autoconf automake gettext libtool ]; + + configurePhase = '' + autoreconf -vif + ./configure --prefix=$out --enable-openmp + ''; + + meta = with stdenv.lib; { + description = "A package comprising of implementations of algorithms for + vertex coloring and derivative computation"; + homepage = "http://cscapes.cs.purdue.edu/coloringpage/software.htm#functionalities"; + license = licenses.lgpl3; + maintainers = with maintainers; [ edwtjo ]; + }; + +} diff --git a/pkgs/applications/science/math/pari/default.nix b/pkgs/applications/science/math/pari/default.nix index 64784facfb96..86d4d289c2a6 100644 --- a/pkgs/applications/science/math/pari/default.nix +++ b/pkgs/applications/science/math/pari/default.nix @@ -14,12 +14,21 @@ stdenv.mkDerivation rec { buildInputs = [ gmp readline libX11 libpthreadstubs tex perl ]; configureScript = "./Configure"; - configureFlags = - "--mt=pthread" + - "--with-gmp=${gmp.dev} " + - "--with-readline=${readline.dev}"; + configureFlags = [ + "--mt=pthread" + "--with-gmp=${gmp.dev}" + "--with-readline=${readline.dev}" + ] ++ stdenv.lib.optional stdenv.isDarwin "--host=x86_64-darwin"; - makeFlags = "all"; + preConfigure = '' + export LD=$CC + ''; + + postConfigure = stdenv.lib.optionalString stdenv.isDarwin '' + echo 'echo x86_64-darwin' > config/arch-osname + ''; + + makeFlags = [ "all" ]; meta = with stdenv.lib; { description = "Computer algebra system for high-performance number theory computations"; @@ -36,12 +45,12 @@ stdenv.mkDerivation rec { Bordeaux I, France), PARI is now under the GPL and maintained by Karim Belabas with the help of many volunteer contributors. - - PARI is a C library, allowing fast computations. + - PARI is a C library, allowing fast computations. - gp is an easy-to-use interactive shell giving access to the PARI functions. - GP is the name of gp's scripting language. - - gp2c, the GP-to-C compiler, combines the best of both worlds - by compiling GP scripts to the C language and transparently loading + - gp2c, the GP-to-C compiler, combines the best of both worlds + by compiling GP scripts to the C language and transparently loading the resulting functions into gp. (gp2c-compiled scripts will typically run 3 or 4 times faster.) gp2c currently only understands a subset of the GP language. @@ -50,7 +59,7 @@ stdenv.mkDerivation rec { downloadPage = "http://pari.math.u-bordeaux.fr/download.html"; license = licenses.gpl2Plus; maintainers = with maintainers; [ ertes raskin AndersonTorres ]; - platforms = platforms.linux; + platforms = platforms.linux ++ platforms.darwin; updateWalker = true; }; } |