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authorTuomas Tynkkynen <tuomas@tuxera.com>2018-03-13 23:04:18 +0200
committerTuomas Tynkkynen <tuomas@tuxera.com>2018-03-13 23:04:18 +0200
commit2fec9c6e297e02718db6be53d645524f0052a7bc (patch)
tree93e73a98dfaa40b290a6e15cf7f61054e5dc59e0 /pkgs/applications/science
parente9961bf9a9f7410c2891c7e86c21ed6388c70d78 (diff)
parentba816ee08721d0c2f5f7e6652091bed085ac7687 (diff)
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Merge remote-tracking branch 'upstream/master' into staging
Conflicts:
	pkgs/development/tools/build-managers/conan/default.nix
Diffstat (limited to 'pkgs/applications/science')
-rw-r--r--pkgs/applications/science/logic/mcrl2/default.nix2
-rw-r--r--pkgs/applications/science/logic/potassco/clingo.nix13
-rw-r--r--pkgs/applications/science/logic/tptp/default.nix4
-rw-r--r--pkgs/applications/science/math/bcal/default.nix9
-rw-r--r--pkgs/applications/science/math/scilab-bin/default.nix14
-rw-r--r--pkgs/applications/science/robotics/yarp/default.nix4
6 files changed, 24 insertions, 22 deletions
diff --git a/pkgs/applications/science/logic/mcrl2/default.nix b/pkgs/applications/science/logic/mcrl2/default.nix
index c84f81740c79..6e8797fcc40b 100644
--- a/pkgs/applications/science/logic/mcrl2/default.nix
+++ b/pkgs/applications/science/logic/mcrl2/default.nix
@@ -1,4 +1,4 @@
-{stdenv, fetchurl, xlibs, cmake, subversion, libGLU_combined, qt5, boost,
+{stdenv, fetchurl, cmake, subversion, libGLU_combined, qt5, boost,
  python27, python27Packages}:
 
 stdenv.mkDerivation rec {
diff --git a/pkgs/applications/science/logic/potassco/clingo.nix b/pkgs/applications/science/logic/potassco/clingo.nix
index a73feba97b64..6bf19a2a2f4d 100644
--- a/pkgs/applications/science/logic/potassco/clingo.nix
+++ b/pkgs/applications/science/logic/potassco/clingo.nix
@@ -1,23 +1,26 @@
-{stdenv, fetchurl, cmake}:
+{ stdenv, fetchzip, cmake }:
+
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
   pname = "clingo";
   version = "5.2.2";
 
-  src = fetchurl {
-    url = "https://github.com/potassco/clingo/releases/v${version}.tar.gz";
-    sha256 = "1kxzb385g8p9mqm1x9wvjrigifa09w6vj0wl7kradibm5qagh7ns";
+  src = fetchzip {
+    url = "https://github.com/potassco/clingo/archive/v${version}.tar.gz";
+    sha256 = "04rjwpna37gzm8vxr09z3z6ay8y8cxbjd8lga7xvqfpn2l178zjm";
   };
 
   buildInputs = [];
   nativeBuildInputs = [cmake];
 
+  cmakeFlags = [ "-DCLINGO_BUILD_WITH_PYTHON=OFF" ];
+
   meta = {
     inherit version;
     description = "ASP system to ground and solve logic programs";
     license = stdenv.lib.licenses.mit;
     maintainers = [stdenv.lib.maintainers.raskin];
-    platforms = stdenv.lib.platforms.linux;
+    platforms = stdenv.lib.platforms.unix;
     homepage = "https://potassco.org/";
     downloadPage = "https://github.com/potassco/clingo/releases/";
   };
diff --git a/pkgs/applications/science/logic/tptp/default.nix b/pkgs/applications/science/logic/tptp/default.nix
index 16ef277e9300..a1d613e6295e 100644
--- a/pkgs/applications/science/logic/tptp/default.nix
+++ b/pkgs/applications/science/logic/tptp/default.nix
@@ -2,14 +2,14 @@
 
 stdenv.mkDerivation rec {
   name = "TPTP-${version}";
-  version = "7.0.0";
+  version = "7.1.0";
 
   src = fetchurl {
     url = [
       "http://www.cs.miami.edu/~tptp/TPTP/Distribution/TPTP-v${version}.tgz"
       "http://www.cs.miami.edu/~tptp/TPTP/Archive/TPTP-v${version}.tgz"
     ];
-    sha256 = "13rm76lqlgbv15p8as0dpc74z2dfv5xydkhnd0hm3hhi3mn39dk9";
+    sha256 = "0slqbqv4y43wz6wnh72s4n540ssapah0d12mndi0c7xr04kf2v2d";
   };
 
   buildInputs = [ tcsh yap perl patchelf ];
diff --git a/pkgs/applications/science/math/bcal/default.nix b/pkgs/applications/science/math/bcal/default.nix
index 9a0a084a1f02..8db4bd157df6 100644
--- a/pkgs/applications/science/math/bcal/default.nix
+++ b/pkgs/applications/science/math/bcal/default.nix
@@ -4,30 +4,29 @@ with stdenv.lib;
 
 stdenv.mkDerivation rec {
   name = "bcal-${version}";
-  version = "1.7";
+  version = "1.8";
 
   src = fetchFromGitHub {
     owner = "jarun";
     repo = "bcal";
     rev = "v${version}";
-    sha256 = "08cqp2jysvy743gmwpzkbqhybsb49n65r63z3if53m3y59qg4aw8";
+    sha256 = "0jdn46wzwq7yn3x6p1xyqarp52pcr0ghnfhkm7nyxv734g1abw7r";
   };
 
   nativeBuildInputs = [ python3Packages.pytest ];
 
-  doCheck = !stdenv.isDarwin;
+  doCheck = true;
   checkPhase = ''
     python3 -m pytest test.py
   '';
 
-  makeFlags = [ "CC=cc" ];
   installFlags = [ "DESTDIR=$(out)" "PREFIX=" ];
 
   meta = {
     description = "Storage conversion and expression calculator";
     homepage = https://github.com/jarun/bcal;
     license = licenses.gpl3;
-    platforms = [ "x86_64-darwin" "x86_64-linux" ];
+    platforms = [ "aarch64-linux" "x86_64-darwin" "x86_64-linux" ];
     maintainers = with maintainers; [ jfrankenau ];
   };
 }
diff --git a/pkgs/applications/science/math/scilab-bin/default.nix b/pkgs/applications/science/math/scilab-bin/default.nix
index f6e255ee46e4..154f1ba39e3c 100644
--- a/pkgs/applications/science/math/scilab-bin/default.nix
+++ b/pkgs/applications/science/math/scilab-bin/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, lib, xlibs }:
+{ stdenv, fetchurl, lib, xorg }:
 
 let
   name = "scilab-bin-${ver}";
@@ -33,12 +33,12 @@ stdenv.mkDerivation rec {
 
   libPath = lib.makeLibraryPath [
     stdenv.cc.cc
-    xlibs.libX11
-    xlibs.libXext
-    xlibs.libXi
-    xlibs.libXrender
-    xlibs.libXtst
-    xlibs.libXxf86vm
+    xorg.libX11
+    xorg.libXext
+    xorg.libXi
+    xorg.libXrender
+    xorg.libXtst
+    xorg.libXxf86vm
   ];
 
   phases = [ "unpackPhase" "fixupPhase" "installPhase" ];
diff --git a/pkgs/applications/science/robotics/yarp/default.nix b/pkgs/applications/science/robotics/yarp/default.nix
index 76b05c8a3a71..98576cfd0917 100644
--- a/pkgs/applications/science/robotics/yarp/default.nix
+++ b/pkgs/applications/science/robotics/yarp/default.nix
@@ -3,12 +3,12 @@
 
 stdenv.mkDerivation rec {
   name = "yarp-${version}";
-  version = "2.3.68";
+  version = "2.3.70.2";
   src = fetchFromGitHub {
     owner = "robotology";
     repo = "yarp";
     rev = "v${version}";
-    sha256 = "1ksz2kv4v14fqgz3fsvvmdk2sikhnxr11jhhf7c2547x6jbzhda6";
+    sha256 = "0mphh899niy30xbjjwi9xpsliq8mladfldbbbjfngdrqfhiray1a";
   };
 
   buildInputs = [ cmake ace ];