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author | Shea Levy <shea@shealevy.com> | 2017-06-28 11:59:54 -0400 |
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committer | Shea Levy <shea@shealevy.com> | 2017-06-28 11:59:54 -0400 |
commit | 24c59a445275b726cec33242d741db8ad97c8ee9 (patch) | |
tree | fc8ac468fa5f82418040a127f05eb8981e707a2b /pkgs/applications/science | |
parent | 46a44627829c58a36ca7628205c374ce63ef3839 (diff) | |
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neuron: enable GUI
Diffstat (limited to 'pkgs/applications/science')
-rw-r--r-- | pkgs/applications/science/biology/iv/default.nix | 31 | ||||
-rw-r--r-- | pkgs/applications/science/biology/neuron/default.nix | 5 |
2 files changed, 34 insertions, 2 deletions
diff --git a/pkgs/applications/science/biology/iv/default.nix b/pkgs/applications/science/biology/iv/default.nix new file mode 100644 index 000000000000..714b7fddd446 --- /dev/null +++ b/pkgs/applications/science/biology/iv/default.nix @@ -0,0 +1,31 @@ +{ stdenv, fetchurl, neuron-version +, libX11, libXext, patchelf +}: + +stdenv.mkDerivation rec + { name = "iv-19"; + src = fetchurl + { url = "http://www.neuron.yale.edu/ftp/neuron/versions/v${neuron-version}/${name}.tar.gz"; + sha256 = "1q22vjngvn3m61mjxynkik7pxvsgc9a0ym46qpa84hmz1v86mdrw"; + }; + nativeBuildInputs = [ patchelf ]; + buildInputs = [ libXext ]; + propagatedBuildInputs = [ libX11 ]; + hardeningDisable = [ "format" ]; + postInstall = '' + for dir in $out/*; do # */ + if [ -d $dir/lib ]; then + mv $dir/* $out # */ + rmdir $dir + break + fi + done + patchelf --add-needed ${libX11}/lib/libX11.so $out/lib/libIVhines.so + ''; + meta = with stdenv.lib; + { description = "InterViews graphical library for Neuron"; + license = licenses.bsd3; + homepage = http://www.neuron.yale.edu/neuron; + platforms = platforms.all; + }; + } diff --git a/pkgs/applications/science/biology/neuron/default.nix b/pkgs/applications/science/biology/neuron/default.nix index 136fba47eb78..bd300846cf09 100644 --- a/pkgs/applications/science/biology/neuron/default.nix +++ b/pkgs/applications/science/biology/neuron/default.nix @@ -9,6 +9,7 @@ , which , python ? null , mpi ? null +, iv }: stdenv.mkDerivation rec { @@ -16,7 +17,7 @@ stdenv.mkDerivation rec { version = "7.4"; nativeBuildInputs = [ which pkgconfig automake autoconf libtool ]; - buildInputs = [ ncurses readline python mpi ]; + buildInputs = [ ncurses readline python mpi iv ]; src = fetchurl { url = "http://www.neuron.yale.edu/ftp/neuron/versions/v${version}/nrn-${version}.tar.gz"; @@ -45,7 +46,7 @@ stdenv.mkDerivation rec { ''; configureFlags = with stdenv.lib; - [ "--without-x" "--with-readline=${readline}" ] + [ "--with-readline=${readline}" "--with-iv=${iv}" ] ++ optionals (python != null) [ "--with-nrnpython=${python.interpreter}" ] ++ (if mpi != null then ["--with-mpi" "--with-paranrn"] else ["--without-mpi"]); |