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authorRobin Gloster <mail@glob.in>2016-01-26 00:29:12 +0000
committerRobin Gloster <mail@glob.in>2016-01-30 20:31:05 +0000
commiteff97ce7fd5d8e94c86b2e5dced0e5059f77d1d2 (patch)
treeb63d7f2b33d225f6f7ce983cadd1ca2baa27e32c
parent2ac5b56135f92932ef15153afed826de59f33f0a (diff)
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ncbiCToolsc: remove
Don't build and have been abandoned for years
-rw-r--r--pkgs/development/libraries/ncbi/default.nix54
-rw-r--r--pkgs/top-level/all-packages.nix2
2 files changed, 0 insertions, 56 deletions
diff --git a/pkgs/development/libraries/ncbi/default.nix b/pkgs/development/libraries/ncbi/default.nix
deleted file mode 100644
index 88f6740f7334..000000000000
--- a/pkgs/development/libraries/ncbi/default.nix
+++ /dev/null
@@ -1,54 +0,0 @@
-a @ { tcsh, mesa, lesstif, libX11, libXaw, xproto, libXt, libSM, libICE, libXmu, libXext, ... }:
-let
-  fetchurl = a.fetchurl;
-
-  version = "20090809";
-  buildInputs = with a; [
-    tcsh libX11 libXaw lesstif xproto mesa libXt
-    libSM libICE libXmu libXext
-  ];
-in
-rec {
-  src = fetchurl {
-    url = "ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/old/${version}/ncbi.tar.gz";
-    sha256 = "05bbnqk6ffvhi556fsabcippzq2zrkynbk09qblzvfzip9hlk1qc";
-  };
-
-  inherit buildInputs;
-  configureFlags = [];
-
-  /* doConfigure should be removed if not needed */
-  phaseNames = ["preBuild" "build" "deploy"];
-
-  preBuild = a.fullDepEntry (''
-    sed -e 's@#!/bin/csh@#! ${a.tcsh}/bin/csh@' -i $(fgrep '#!/bin/csh' -rl build make)
-    sed -e '/set path/d' -i make/ln-if-absent
-    sed -e 's@/usr/include @${a.lesstif}/include ${a.mesa}/include @' -i make/makedis.csh
-    sed -e 's@/usr/[a-zA-Z0-9]*/include @@g; s@/usr/include/[a-zA-Z0-9/] @@g' -i make/makedis.csh 
-    cd ..
-  '') ["doUnpack" "minInit"];
-
-  build = a.fullDepEntry (''
-    ./ncbi/make/makedis.csh
-  '') ["preBuild" "addInputs"];
-
-  deploy = a.fullDepEntry (''
-    mkdir -p $out/bin $out/lib $out/include $out/source $out/share/${name}/build-snapshot
-    cd ncbi/build
-    cp *.o *.so $out/lib
-    cp -r . $out/share/${name}/build-snapshot
-    cp ../make/makedis.csh $out/share/${name}/build-snapshot
-    cp *.h $out/include 
-    cp *.c *.h $out/source
-    find . -perm -0100 -a '(' '(' ! -name '*.*' ')' -o '(' -name '*.REAL' ')' ')' -exec cp '{}' $out/bin ';'
-  '') ["defEnsureDir" "build" "minInit"];
-      
-  name = "NCBI-Toolbox-" + version;
-  meta = {
-    description = "NCBI general-purpose portable toolkit";
-    maintainers = [
-      a.lib.maintainers.raskin
-    ];
-    #platforms = a.lib.platforms.linux ;
-  };
-}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 1114e32a22dd..aa4d519c4397 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -14929,8 +14929,6 @@ let
 
   mrbayes = callPackage ../applications/science/biology/mrbayes { };
 
-  ncbiCTools = builderDefsPackage (callPackage ../development/libraries/ncbi) {};
-
   ncbi_tools = callPackage ../applications/science/biology/ncbi-tools { };
 
   paml = callPackage ../applications/science/biology/paml { };