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author | Robin Gloster <mail@glob.in> | 2016-01-26 00:29:12 +0000 |
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committer | Robin Gloster <mail@glob.in> | 2016-01-30 20:31:05 +0000 |
commit | eff97ce7fd5d8e94c86b2e5dced0e5059f77d1d2 (patch) | |
tree | b63d7f2b33d225f6f7ce983cadd1ca2baa27e32c | |
parent | 2ac5b56135f92932ef15153afed826de59f33f0a (diff) | |
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ncbiCToolsc: remove
Don't build and have been abandoned for years
-rw-r--r-- | pkgs/development/libraries/ncbi/default.nix | 54 | ||||
-rw-r--r-- | pkgs/top-level/all-packages.nix | 2 |
2 files changed, 0 insertions, 56 deletions
diff --git a/pkgs/development/libraries/ncbi/default.nix b/pkgs/development/libraries/ncbi/default.nix deleted file mode 100644 index 88f6740f7334..000000000000 --- a/pkgs/development/libraries/ncbi/default.nix +++ /dev/null @@ -1,54 +0,0 @@ -a @ { tcsh, mesa, lesstif, libX11, libXaw, xproto, libXt, libSM, libICE, libXmu, libXext, ... }: -let - fetchurl = a.fetchurl; - - version = "20090809"; - buildInputs = with a; [ - tcsh libX11 libXaw lesstif xproto mesa libXt - libSM libICE libXmu libXext - ]; -in -rec { - src = fetchurl { - url = "ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/old/${version}/ncbi.tar.gz"; - sha256 = "05bbnqk6ffvhi556fsabcippzq2zrkynbk09qblzvfzip9hlk1qc"; - }; - - inherit buildInputs; - configureFlags = []; - - /* doConfigure should be removed if not needed */ - phaseNames = ["preBuild" "build" "deploy"]; - - preBuild = a.fullDepEntry ('' - sed -e 's@#!/bin/csh@#! ${a.tcsh}/bin/csh@' -i $(fgrep '#!/bin/csh' -rl build make) - sed -e '/set path/d' -i make/ln-if-absent - sed -e 's@/usr/include @${a.lesstif}/include ${a.mesa}/include @' -i make/makedis.csh - sed -e 's@/usr/[a-zA-Z0-9]*/include @@g; s@/usr/include/[a-zA-Z0-9/] @@g' -i make/makedis.csh - cd .. - '') ["doUnpack" "minInit"]; - - build = a.fullDepEntry ('' - ./ncbi/make/makedis.csh - '') ["preBuild" "addInputs"]; - - deploy = a.fullDepEntry ('' - mkdir -p $out/bin $out/lib $out/include $out/source $out/share/${name}/build-snapshot - cd ncbi/build - cp *.o *.so $out/lib - cp -r . $out/share/${name}/build-snapshot - cp ../make/makedis.csh $out/share/${name}/build-snapshot - cp *.h $out/include - cp *.c *.h $out/source - find . -perm -0100 -a '(' '(' ! -name '*.*' ')' -o '(' -name '*.REAL' ')' ')' -exec cp '{}' $out/bin ';' - '') ["defEnsureDir" "build" "minInit"]; - - name = "NCBI-Toolbox-" + version; - meta = { - description = "NCBI general-purpose portable toolkit"; - maintainers = [ - a.lib.maintainers.raskin - ]; - #platforms = a.lib.platforms.linux ; - }; -} diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index 1114e32a22dd..aa4d519c4397 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -14929,8 +14929,6 @@ let mrbayes = callPackage ../applications/science/biology/mrbayes { }; - ncbiCTools = builderDefsPackage (callPackage ../development/libraries/ncbi) {}; - ncbi_tools = callPackage ../applications/science/biology/ncbi-tools { }; paml = callPackage ../applications/science/biology/paml { }; |