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| author | Arcadio Rubio García <arc@well.ox.ac.uk> | 2018-01-22 18:27:50 +0000 |
|---|---|---|
| committer | Arcadio Rubio García <arc@well.ox.ac.uk> | 2018-01-24 16:07:15 +0000 |
| commit | 72d675b23cf1c8326818499805ca7eca432d0cfe (patch) | |
| tree | 077f1687324fe1b713e469f165c55758747f0c9b | |
| parent | 1d479088792e8a5999c4ffcb747653a53c1e78fe (diff) | |
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star: init at 2.5.3a
| -rw-r--r-- | lib/maintainers.nix | 1 | ||||
| -rw-r--r-- | pkgs/applications/science/biology/star/default.nix | 34 | ||||
| -rw-r--r-- | pkgs/top-level/all-packages.nix | 2 |
3 files changed, 37 insertions, 0 deletions
diff --git a/lib/maintainers.nix b/lib/maintainers.nix index 9f9234f18a55..1e50e3d93f71 100644 --- a/lib/maintainers.nix +++ b/lib/maintainers.nix @@ -55,6 +55,7 @@ antonxy = "Anton Schirg <anton.schirg@posteo.de>"; apeschar = "Albert Peschar <albert@peschar.net>"; apeyroux = "Alexandre Peyroux <alex@px.io>"; + arcadio = "Arcadio Rubio García <arc@well.ox.ac.uk>"; ardumont = "Antoine R. Dumont <eniotna.t@gmail.com>"; aristid = "Aristid Breitkreuz <aristidb@gmail.com>"; arobyn = "Alexei Robyn <shados@shados.net>"; diff --git a/pkgs/applications/science/biology/star/default.nix b/pkgs/applications/science/biology/star/default.nix new file mode 100644 index 000000000000..1642739140d6 --- /dev/null +++ b/pkgs/applications/science/biology/star/default.nix @@ -0,0 +1,34 @@ +{ stdenv, fetchFromGitHub, zlib }: + +stdenv.mkDerivation rec { + name = "star-${version}"; + version = "2.5.3a"; + + src = fetchFromGitHub { + repo = "STAR"; + owner = "alexdobin"; + rev = version; + sha256 = "1fd9xl7i1zxgsxn2qf6gz8s42g2djm29qmp6qb35d8nnxh8ns54x"; + }; + + sourceRoot = "source/source"; + + postPatch = "sed 's:/bin/rm:rm:g' -i Makefile"; + + buildInputs = [ zlib ]; + + buildPhase = "make STAR STARlong"; + + installPhase = '' + mkdir -p $out/bin + cp STAR STARlong $out/bin + ''; + + meta = with stdenv.lib; { + description = "Spliced Transcripts Alignment to a Reference"; + homepage = https://github.com/alexdobin/STAR; + license = licenses.gpl3Plus; + platforms = platforms.linux; + maintainers = [ maintainers.arcadio ]; + }; +} diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index 6318a56fedf4..186ce06978f2 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -18962,6 +18962,8 @@ with pkgs; snpeff = callPackage ../applications/science/biology/snpeff/default.nix { }; + star = callPackage ../applications/science/biology/star { }; + varscan = callPackage ../applications/science/biology/varscan/default.nix { }; bwa = callPackage ../applications/science/biology/bwa/default.nix { }; |