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| author | Pascal Wittmann <mail@pascal-wittmann.de> | 2018-05-14 23:34:26 +0200 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2018-05-14 23:34:26 +0200 |
| commit | 4e7d08cd97bb93daf60ebe4a6716b248324adca8 (patch) | |
| tree | 4a6135ae144737029079b55e3f94e9dfbf7ffd02 | |
| parent | 318970454971380d62a12c07fbf60b6e36c34aae (diff) | |
| parent | e4a2b70f91dd19535cc08c966b9ec612a0216827 (diff) | |
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Merge pull request #40523 from arcadio/minimap2
minimap2: init at 2.10
| -rw-r--r-- | pkgs/applications/science/biology/minimap2/default.nix | 31 | ||||
| -rw-r--r-- | pkgs/top-level/all-packages.nix | 2 |
2 files changed, 33 insertions, 0 deletions
diff --git a/pkgs/applications/science/biology/minimap2/default.nix b/pkgs/applications/science/biology/minimap2/default.nix new file mode 100644 index 000000000000..ae278f76792b --- /dev/null +++ b/pkgs/applications/science/biology/minimap2/default.nix @@ -0,0 +1,31 @@ +{ stdenv, fetchFromGitHub, zlib }: + +stdenv.mkDerivation rec { + name = "${pname}-${version}"; + pname = "minimap2"; + version = "2.10"; + + src = fetchFromGitHub { + repo = pname; + owner = "lh3"; + rev = "v${version}"; + sha256 = "0b35w14j9h2q9qbh3sxc518mcx0ifsvwqr1nv70rv6mgy1cqqkw0"; + }; + + buildInputs = [ zlib ]; + + installPhase = '' + mkdir -p $out/bin + cp minimap2 $out/bin + mkdir -p $out/share/man/man1 + cp minimap2.1 $out/share/man/man1 + ''; + + meta = with stdenv.lib; { + description = "A versatile pairwise aligner for genomic and spliced nucleotide sequences"; + homepage = https://lh3.github.io/minimap2; + license = licenses.mit; + platforms = platforms.all; + maintainers = [ maintainers.arcadio ]; + }; +} diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index 9d11c94e8684..e269cbb956ac 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -19927,6 +19927,8 @@ with pkgs; inherit (perlPackages) GetoptTabular MNI-Perllib; }; + minimap2 = callPackage ../applications/science/biology/minimap2 { }; + ncbi_tools = callPackage ../applications/science/biology/ncbi-tools { }; paml = callPackage ../applications/science/biology/paml { }; |