Merge branch 'master' into staging

* master: (25 commits)
  prosody: 0.10.1 -> 0.10.2
  mpd: fix spelling in description
  pulseaudio-ctl: init at 1.66
  qt: remove install_name_tool stuff
  multimc: 0.6.1 -> 0.6.2
  lib: test for bitAnd, bitOr, bitXor
  pandas: fix check with the current pytest
  qt: fixup from c4cac55d6979ccdbc48cf0daf26e44c79cf5d0f9
  calibre: 2.24.1 -> 2.25.0
  spotify: 1.0.79.223.g92622cc2-21 -> 1.0.80.480.g51b03ac3-13 (#41356)
  libbsd-freedesktop: re-init at 0.9.1, use for samba
  sbt: 1.1.4 -> 1.1.6
  nixos/slurm: remove propagatedBuidInputs from slurmWrapped
  gitkraken: 3.6.1 -> 3.6.3
  pass-import: export PREFIX, set PASSWORD_STORE_BIN
  pass: Add pass-audit extension
  slurm: add maintainer
  nixos/slurm: update test, add test for enableStools
  slurm: add freeipmi, readline, libssh2, fix hwloc
  nixos/slurm: Add man pages to wrapedSlurm
  ...

27 files changed, 314 insertions, 162 deletions

diff --git a/lib/default.nix b/lib/default.nix
index 4ca2e2ea6e37..d608d7094474 100644
--- a/lib/default.nix
+++ b/lib/default.nix
@@ -56,10 +56,10 @@ let
       hasAttr head isAttrs isBool isInt isList isString length
       lessThan listToAttrs pathExists readFile replaceStrings seq
       stringLength sub substring tail;
-    inherit (trivial) id const concat or and boolToString mergeAttrs
-      flip mapNullable inNixShell min max importJSON warn info
-      nixpkgsVersion version mod compare splitByAndCompare
-      functionArgs setFunctionArgs isFunction;
+    inherit (trivial) id const concat or and bitAnd bitOr bitXor
+      boolToString mergeAttrs flip mapNullable inNixShell min max
+      importJSON warn info nixpkgsVersion version mod compare
+      splitByAndCompare functionArgs setFunctionArgs isFunction;
 
     inherit (fixedPoints) fix fix' extends composeExtensions
       makeExtensible makeExtensibleWithCustomName;
diff --git a/lib/tests/misc.nix b/lib/tests/misc.nix
index c683df7d7ca3..eab20d0f14dc 100644
--- a/lib/tests/misc.nix
+++ b/lib/tests/misc.nix
@@ -45,6 +45,21 @@ runTests {
     expected = true;
   };
 
+  testBitAnd = {
+    expr = (bitAnd 3 10);
+    expected = 2;
+  };
+
+  testBitOr = {
+    expr = (bitOr 3 10);
+    expected = 11;
+  };
+
+  testBitXor = {
+    expr = (bitXor 3 10);
+    expected = 9;
+  };
+
 # STRINGS
 
   testConcatMapStrings = {
diff --git a/lib/trivial.nix b/lib/trivial.nix
index 251cb796db0e..86e3c939dd69 100644
--- a/lib/trivial.nix
+++ b/lib/trivial.nix
@@ -1,4 +1,38 @@
 { lib }:
+let
+  zipIntBits = f: x: y:
+    let
+      # (intToBits 6) -> [ 0 1 1 ]
+      intToBits = x:
+        if x==0 then
+          []
+        else
+          let
+            headbit  = if (x / 2) * 2 != x then 1 else 0;                          # x & 1
+            tailbits = if x < 0 then 9223372036854775807 + ((x+1) / 2) else x / 2; # x >>> 1
+          in
+            [headbit] ++ (intToBits tailbits);
+
+      # (bitsToInt [ 0 1 1 ]) -> 6
+      bitsToInt = l:
+        if l==[] then
+          0
+        else
+          (builtins.head l) + (2 * (bitsToInt (builtins.tail l)));
+
+      zipListsWith' = fst: snd:
+        if fst==[] && snd==[] then
+          []
+        else if fst==[] then
+          [(f 0                   (builtins.head snd))] ++ (zipListsWith' []                  (builtins.tail snd))
+        else if snd==[] then
+          [(f (builtins.head fst) 0                  )] ++ (zipListsWith' (builtins.tail fst) []                 )
+        else
+          [(f (builtins.head fst) (builtins.head snd))] ++ (zipListsWith' (builtins.tail fst) (builtins.tail snd));
+    in
+      assert (builtins.isInt x) && (builtins.isInt y);
+      bitsToInt (zipListsWith' (intToBits x) (intToBits y));
+in
 rec {
 
   /* The identity function
@@ -31,6 +65,15 @@ rec {
   /* boolean “and” */
   and = x: y: x && y;
 
+  /* bitwise “and” */
+  bitAnd = builtins.bitAnd or zipIntBits (a: b: if a==1 && b==1 then 1 else 0);
+
+  /* bitwise “or” */
+  bitOr = builtins.bitOr or zipIntBits (a: b: if a==1 || b==1 then 1 else 0);
+
+  /* bitwise “xor” */
+  bitXor = builtins.bitXor or zipIntBits (a: b: if a!=b then 1 else 0);
+
   /* Convert a boolean to a string.
      Note that toString on a bool returns "1" and "".
   */
diff --git a/nixos/modules/services/audio/mpd.nix b/nixos/modules/services/audio/mpd.nix
index 500a9e35a13b..94020ed05d67 100644
--- a/nixos/modules/services/audio/mpd.nix
+++ b/nixos/modules/services/audio/mpd.nix
@@ -133,7 +133,7 @@ in {
         defaultText = ''''${dataDir}/tag_cache'';
         description = ''
           The path to MPD's database. If set to <literal>null</literal> the
-          paramter is omitted from the configuration.
+          parameter is omitted from the configuration.
         '';
       };
     };
diff --git a/nixos/modules/services/computing/slurm/slurm.nix b/nixos/modules/services/computing/slurm/slurm.nix
index 3e513ab15717..1e1c5bc9f035 100644
--- a/nixos/modules/services/computing/slurm/slurm.nix
+++ b/nixos/modules/services/computing/slurm/slurm.nix
@@ -6,7 +6,7 @@ let
 
   cfg = config.services.slurm;
   # configuration file can be generated by http://slurm.schedmd.com/configurator.html
-  configFile = pkgs.writeText "slurm.conf"
+  configFile = pkgs.writeTextDir "slurm.conf"
     ''
       ${optionalString (cfg.controlMachine != null) ''controlMachine=${cfg.controlMachine}''}
       ${optionalString (cfg.controlAddr != null) ''controlAddr=${cfg.controlAddr}''}
@@ -17,10 +17,25 @@ let
       ${cfg.extraConfig}
     '';
 
-  plugStackConfig = pkgs.writeText "plugstack.conf"
+  plugStackConfig = pkgs.writeTextDir "plugstack.conf"
     ''
       ${optionalString cfg.enableSrunX11 ''optional ${pkgs.slurm-spank-x11}/lib/x11.so''}
+      ${cfg.extraPlugstackConfig}
     '';
+
+
+  cgroupConfig = pkgs.writeTextDir "cgroup.conf"
+   ''
+     ${cfg.extraCgroupConfig}
+   '';
+
+  # slurm expects some additional config files to be
+  # in the same directory as slurm.conf
+  etcSlurm = pkgs.symlinkJoin {
+    name = "etc-slurm";
+    paths = [ configFile cgroupConfig plugStackConfig ];
+  };
+
 in
 
 {
@@ -46,7 +61,17 @@ in
 
       client = {
         enable = mkEnableOption "slurm client daemon";
+      };
 
+      enableStools = mkOption {
+        type = types.bool;
+        default = false;
+        description = ''
+          Wether to provide a slurm.conf file.
+          Enable this option if you do not run a slurm daemon on this host
+          (i.e. <literal>server.enable</literal> and <literal>client.enable</literal> are <literal>false</literal>)
+          but you still want to run slurm commands from this host.
+        '';
       };
 
       package = mkOption {
@@ -97,7 +122,7 @@ in
         example = "debug Nodes=linux[1-32] Default=YES MaxTime=INFINITE State=UP";
         description = ''
           Name by which the partition may be referenced. Note that now you have
-          to write patrition's parameters after the name.
+          to write the partition's parameters after the name.
         '';
       };
 
@@ -107,8 +132,10 @@ in
         description = ''
           If enabled srun will accept the option "--x11" to allow for X11 forwarding
           from within an interactive session or a batch job. This activates the
-          slurm-spank-x11 module. Note that this requires 'services.openssh.forwardX11'
-          to be enabled on the compute nodes.
+          slurm-spank-x11 module. Note that this option also enables
+          'services.openssh.forwardX11' on the client.
+
+          This option requires slurm to be compiled without native X11 support.
         '';
       };
 
@@ -130,6 +157,23 @@ in
           the end of the slurm configuration file.
         '';
       };
+
+      extraPlugstackConfig = mkOption {
+        default = "";
+        type = types.lines;
+        description = ''
+          Extra configuration that will be added to the end of <literal>plugstack.conf</literal>.
+        '';
+      };
+
+      extraCgroupConfig = mkOption {
+        default = "";
+        type = types.lines;
+        description = ''
+          Extra configuration for <literal>cgroup.conf</literal>. This file is
+          used when <literal>procTrackType=proctrack/cgroup</literal>.
+        '';
+      };
     };
 
   };
@@ -142,8 +186,6 @@ in
       wrappedSlurm = pkgs.stdenv.mkDerivation {
         name = "wrappedSlurm";
 
-        propagatedBuildInputs = [ cfg.package configFile ];
-
         builder = pkgs.writeText "builder.sh" ''
           source $stdenv/setup
           mkdir -p $out/bin
@@ -155,17 +197,20 @@ in
           #!/bin/sh
           if [ -z "$SLURM_CONF" ]
           then
-            SLURM_CONF="${configFile}" "$EXE" "\$@"
+            SLURM_CONF="${etcSlurm}/slurm.conf" "$EXE" "\$@"
           else
             "$EXE" "\$0"
           fi
           EOT
             chmod +x "$wrappername"
           done
+
+          mkdir -p $out/share
+          ln -s ${getBin cfg.package}/share/man $out/share/man
         '';
       };
 
-  in mkIf (cfg.client.enable || cfg.server.enable) {
+  in mkIf (cfg.enableStools || cfg.client.enable || cfg.server.enable) {
 
     environment.systemPackages = [ wrappedSlurm ];
 
@@ -190,6 +235,8 @@ in
       '';
     };
 
+    services.openssh.forwardX11 = mkIf cfg.client.enable (mkDefault true);
+
     systemd.services.slurmctld = mkIf (cfg.server.enable) {
       path = with pkgs; [ wrappedSlurm munge coreutils ]
         ++ lib.optional cfg.enableSrunX11 slurm-spank-x11;
diff --git a/nixos/tests/slurm.nix b/nixos/tests/slurm.nix
index dc4f62af5640..c23d85e40020 100644
--- a/nixos/tests/slurm.nix
+++ b/nixos/tests/slurm.nix
@@ -1,7 +1,6 @@
 import ./make-test.nix ({ pkgs, ... }:
 let mungekey = "mungeverryweakkeybuteasytointegratoinatest";
     slurmconfig = {
-      client.enable = true;
       controlMachine = "control";
       nodeName = ''
         control
@@ -20,9 +19,12 @@ in {
         # TODO slrumd port and slurmctld port should be configurations and
         # automatically allowed by the  firewall.
         networking.firewall.enable = false;
-        services.slurm = slurmconfig;
+        services.slurm = {
+          client.enable = true;
+        } // slurmconfig;
       };
     in {
+
     control =
       { config, pkgs, ...}:
       {
@@ -31,17 +33,28 @@ in {
           server.enable = true;
         } // slurmconfig;
       };
+
+    submit =
+      { config, pkgs, ...}:
+      {
+        networking.firewall.enable = false;
+        services.slurm = {
+          enableStools = true;
+        } // slurmconfig;
+      };
+
     node1 = computeNode;
     node2 = computeNode;
     node3 = computeNode;
   };
 
+
   testScript =
   ''
   startAll;
 
   # Set up authentification across the cluster
-  foreach my $node (($control,$node1,$node2,$node3))
+  foreach my $node (($submit,$control,$node1,$node2,$node3))
   {
     $node->waitForUnit("default.target");
 
@@ -60,7 +73,7 @@ in {
   };
 
   subtest "can_start_slurmd", sub {
-    foreach my $node (($control,$node1,$node2,$node3))
+    foreach my $node (($node1,$node2,$node3))
     {
       $node->succeed("systemctl restart slurmd.service");
       $node->waitForUnit("slurmd");
@@ -72,7 +85,7 @@ in {
   subtest "run_distributed_command", sub {
     # Run `hostname` on 3 nodes of the partition (so on all the 3 nodes).
     # The output must contain the 3 different names
-    $control->succeed("srun -N 3 hostname | sort | uniq | wc -l | xargs test 3 -eq");
+    $submit->succeed("srun -N 3 hostname | sort | uniq | wc -l | xargs test 3 -eq");
   };
   '';
 })
diff --git a/pkgs/applications/audio/pulseaudio-ctl/default.nix b/pkgs/applications/audio/pulseaudio-ctl/default.nix
new file mode 100644
index 000000000000..6e1e576043d1
--- /dev/null
+++ b/pkgs/applications/audio/pulseaudio-ctl/default.nix
@@ -0,0 +1,41 @@
+{ stdenv, fetchFromGitHub, makeWrapper
+, bc, dbus, gawk, gnused, libnotify, pulseaudioLight }:
+
+let
+  path = stdenv.lib.makeBinPath [ bc dbus gawk gnused libnotify pulseaudioLight ];
+  pname = "pulseaudio-ctl";
+
+in stdenv.mkDerivation rec {
+  name = "${pname}-${version}";
+  version = "1.66";
+
+  src = fetchFromGitHub {
+    owner = "graysky2";
+    repo = pname;
+    rev = "v${version}";
+    sha256 = "19a24w7y19551ar41q848w7r1imqkl9cpff4dpb7yry7qp1yjg0y";
+  };
+
+  postPatch = ''
+    substituteInPlace Makefile \
+      --replace /usr $out
+
+    substituteInPlace common/${pname}.in \
+      --replace '$0' ${pname}
+  '';
+
+  nativeBuildInputs = [ makeWrapper ];
+
+  postFixup = ''
+    wrapProgram $out/bin/${pname} \
+      --prefix PATH : ${path}
+  '';
+
+  meta = with stdenv.lib; {
+    description = "Control pulseaudio volume from the shell or mapped to keyboard shortcuts. No need for alsa-utils.";
+    homepage = https://bbs.archlinux.org/viewtopic.php?id=124513;
+    license = licenses.mit;
+    maintainers = with maintainers; [ peterhoeg ];
+    platforms = platforms.linux;
+  };
+}
diff --git a/pkgs/applications/audio/spotify/default.nix b/pkgs/applications/audio/spotify/default.nix
index 5f6772256cab..b8495465db55 100644
--- a/pkgs/applications/audio/spotify/default.nix
+++ b/pkgs/applications/audio/spotify/default.nix
@@ -7,7 +7,7 @@ let
   # Latest version number can be found at:
   # http://repository-origin.spotify.com/pool/non-free/s/spotify-client/
   # Be careful not to pick the testing version.
-  version = "1.0.79.223.g92622cc2-21";
+  version = "1.0.80.480.g51b03ac3-13";
 
   deps = [
     alsaLib
@@ -51,7 +51,7 @@ stdenv.mkDerivation {
 
   src = fetchurl {
     url = "https://repository-origin.spotify.com/pool/non-free/s/spotify-client/spotify-client_${version}_amd64.deb";
-    sha256 = "1x1rpprzin4cmz1spzw036b4phd0yk1v7idlrcy4pkv97b4g5dw6";
+    sha256 = "e32f4816ae79dbfa0c14086e76df3bc83d526402aac1dbba534127fc00fe50ea";
   };
 
   buildInputs = [ dpkg makeWrapper ];
diff --git a/pkgs/applications/misc/calibre/default.nix b/pkgs/applications/misc/calibre/default.nix
index 68f95195b6e7..93a5d9428534 100644
--- a/pkgs/applications/misc/calibre/default.nix
+++ b/pkgs/applications/misc/calibre/default.nix
@@ -5,12 +5,12 @@
 }:
 
 stdenv.mkDerivation rec {
-  version = "3.24.1";
+  version = "3.25.0";
   name = "calibre-${version}";
 
   src = fetchurl {
     url = "https://download.calibre-ebook.com/${version}/${name}.tar.xz";
-    sha256 = "1hgjnw8ynvpcfry4vanz5f54sjq55pqidvyy47lz59cz0s8lx50b";
+    sha256 = "018gxjbj5rak4ys5nyx6749rj9vszlf9k1wdcpl60ap3l83kxdnd";
   };
 
   patches = [
diff --git a/pkgs/applications/version-management/gitkraken/default.nix b/pkgs/applications/version-management/gitkraken/default.nix
index 74364327645d..dc983e003365 100644
--- a/pkgs/applications/version-management/gitkraken/default.nix
+++ b/pkgs/applications/version-management/gitkraken/default.nix
@@ -12,11 +12,11 @@ let
 in
 stdenv.mkDerivation rec {
   name = "gitkraken-${version}";
-  version = "3.6.1";
+  version = "3.6.3";
 
   src = fetchurl {
     url = "https://release.gitkraken.com/linux/v${version}.deb";
-    sha256 = "1f77y281r3dp35vw3zdai2cgwwy2gpg7px6g66ylfz4gkig26dz8";
+    sha256 = "1bl4zz4k9whv5q6bkf6hyki26dkjhm19rzx2800zzadbrdgs7iz4";
   };
 
   libPath = makeLibraryPath [
diff --git a/pkgs/development/haskell-modules/configuration-ghc-8.4.x.nix b/pkgs/development/haskell-modules/configuration-ghc-8.4.x.nix
index 55e80d7fb0c3..b0dc20128fc4 100644
--- a/pkgs/development/haskell-modules/configuration-ghc-8.4.x.nix
+++ b/pkgs/development/haskell-modules/configuration-ghc-8.4.x.nix
@@ -408,8 +408,8 @@ self: super: {
   # Older versions don't compile.
   base-compat = self.base-compat_0_10_1;
   brick = self.brick_0_37_1;
-  dhall = self.dhall_1_13_0;
-  dhall_1_13_0 = doJailbreak super.dhall_1_13_0;  # support ansi-terminal 0.8.x
+  dhall = self.dhall_1_14_0;
+  dhall_1_13_0 = doJailbreak super.dhall_1_14_0;  # support ansi-terminal 0.8.x
   HaTeX = self.HaTeX_3_19_0_0;
   hpack = self.hpack_0_28_2;
   hspec = dontCheck super.hspec_2_5_1;
diff --git a/pkgs/development/libraries/libbsd/default.nix b/pkgs/development/libraries/libbsd/default.nix
new file mode 100644
index 000000000000..114d3209b58a
--- /dev/null
+++ b/pkgs/development/libraries/libbsd/default.nix
@@ -0,0 +1,21 @@
+{ stdenv, fetchurl }:
+
+stdenv.mkDerivation rec {
+  name = "libbsd-${version}";
+  version = "0.9.1";
+
+  src = fetchurl {
+    url = "http://libbsd.freedesktop.org/releases/${name}.tar.xz";
+    sha256 = "1957w2wi7iqar978qlfsm220dwywnrh5m58nrnn9zmi74ds3bn2n";
+  };
+
+  patches = [];
+
+  meta = with stdenv.lib; {
+    description = "Common functions found on BSD systems, Freedesktop fork";
+    homepage = https://libbsd.freedesktop.org/;
+    license = licenses.bsd3;
+    platforms = platforms.linux;
+    maintainers = with maintainers; [ raskin ];
+  };
+}
diff --git a/pkgs/development/libraries/poppler/default.nix b/pkgs/development/libraries/poppler/default.nix
index 960a792822d3..bfc94e1fac8a 100644
--- a/pkgs/development/libraries/poppler/default.nix
+++ b/pkgs/development/libraries/poppler/default.nix
@@ -3,7 +3,7 @@
 , withData ? true, poppler_data
 , qt5Support ? false, qtbase ? null
 , introspectionSupport ? false, gobjectIntrospection ? null
-, utils ? false
+, utils ? false, nss ? null
 , minimal ? false, suffix ? "glib"
 }:
 
@@ -28,6 +28,7 @@ stdenv.mkDerivation rec {
     [ zlib freetype fontconfig libjpeg openjpeg ]
     ++ optionals (!minimal) [ cairo lcms curl ]
     ++ optional qt5Support qtbase
+    ++ optional utils nss
     ++ optional introspectionSupport gobjectIntrospection;
 
   nativeBuildInputs = [ cmake ninja pkgconfig ];
@@ -49,7 +50,9 @@ stdenv.mkDerivation rec {
     description = "A PDF rendering library";
 
     longDescription = ''
-      Poppler is a PDF rendering library based on the xpdf-3.0 code base.
+      Poppler is a PDF rendering library based on the xpdf-3.0 code
+      base. In addition it provides a number of tools that can be
+      installed separately.
     '';
 
     license = licenses.gpl2;
diff --git a/pkgs/development/libraries/qt-5/mkDerivation.nix b/pkgs/development/libraries/qt-5/mkDerivation.nix
index 53949ddd4925..96014cfbc779 100644
--- a/pkgs/development/libraries/qt-5/mkDerivation.nix
+++ b/pkgs/development/libraries/qt-5/mkDerivation.nix
@@ -16,9 +16,6 @@ let
       optional (!debug) "-DQT_NO_DEBUG"
       ++ lib.toList (args.NIX_CFLAGS_COMPILE or []);
 
-    configureFlags = [ "-no-framework" ]
-                  ++ (args.configureFlags or []);
-
     cmakeFlags =
       (args.cmakeFlags or [])
       ++ [
diff --git a/pkgs/development/libraries/qt-5/modules/qtbase.nix b/pkgs/development/libraries/qt-5/modules/qtbase.nix
index 28b250437d08..0c7af9e185dd 100644
--- a/pkgs/development/libraries/qt-5/modules/qtbase.nix
+++ b/pkgs/development/libraries/qt-5/modules/qtbase.nix
@@ -298,6 +298,7 @@ stdenv.mkDerivation {
           "-no-fontconfig"
           "-qt-freetype"
           "-qt-libpng"
+          "-no-framework"
         ]
       else
         [
@@ -373,24 +374,6 @@ stdenv.mkDerivation {
     ''
 
     + (
-      if stdenv.isDarwin
-      then
-        ''
-          fixDarwinDylibNames_rpath() {
-            local flags=()
-
-            for fn in "$@"; do
-              flags+=(-change "@rpath/$fn.framework/Versions/5/$fn" "$out/lib/$fn.framework/Versions/5/$fn")
-            done
-
-            for fn in "$@"; do
-              echo "$fn: fixing dylib"
-              install_name_tool -id "$out/lib/$fn.framework/Versions/5/$fn" "''${flags[@]}" "$out/lib/$fn.framework/Versions/5/$fn"
-            done
-          }
-          fixDarwinDylibNames_rpath "QtConcurrent" "QtPrintSupport" "QtCore" "QtSql" "QtDBus" "QtTest" "QtGui" "QtWidgets" "QtNetwork" "QtXml" "QtOpenGL"
-        ''
-      else
         # fixup .pc file (where to find 'moc' etc.)
         ''
           sed -i "$dev/lib/pkgconfig/Qt5Core.pc" \
diff --git a/pkgs/development/python-modules/pandas/default.nix b/pkgs/development/python-modules/pandas/default.nix
index 3f9188a6322a..cb497742e47a 100644
--- a/pkgs/development/python-modules/pandas/default.nix
+++ b/pkgs/development/python-modules/pandas/default.nix
@@ -55,6 +55,8 @@ in buildPythonPackage rec {
     xlwt
   ];
 
+  patches = [ ./pandas-0.22.0-pytest-3.5.1.patch ];
+
   # For OSX, we need to add a dependency on libcxx, which provides
   # `complex.h` and other libraries that pandas depends on to build.
   postPatch = optionalString isDarwin ''
diff --git a/pkgs/development/python-modules/pandas/pandas-0.22.0-pytest-3.5.1.patch b/pkgs/development/python-modules/pandas/pandas-0.22.0-pytest-3.5.1.patch
new file mode 100644
index 000000000000..cba71b91316a
--- /dev/null
+++ b/pkgs/development/python-modules/pandas/pandas-0.22.0-pytest-3.5.1.patch
@@ -0,0 +1,13 @@
+--- a/pandas/tests/io/test_pytables.py
++++ b/pandas/tests/io/test_pytables.py
+@@ -5028,8 +5028,8 @@ class TestHDFStore(Base):
+             with ensure_clean_path(self.path) as path:
+                 with catch_warnings(record=True):
+                     with pytest.raises(
+-                        ValueError, msg=("cannot have non-object label "
+-                                         "DataIndexableCol")):
++                        ValueError, message=("cannot have non-object label "
++                                             "DataIndexableCol")):
+                         df.to_hdf(path, 'df', format='table',
+                                   data_columns=True)
+ 
diff --git a/pkgs/development/tools/build-managers/sbt/default.nix b/pkgs/development/tools/build-managers/sbt/default.nix
index 04102e7e8f86..76d099625626 100644
--- a/pkgs/development/tools/build-managers/sbt/default.nix
+++ b/pkgs/development/tools/build-managers/sbt/default.nix
@@ -2,7 +2,7 @@
 
 stdenv.mkDerivation rec {
   name = "sbt-${version}";
-  version = "1.1.4";
+  version = "1.1.6";
 
   src = fetchurl {
     urls = [
@@ -10,7 +10,7 @@ stdenv.mkDerivation rec {
       "https://github.com/sbt/sbt/releases/download/v${version}/sbt-${version}.tgz"
       "https://cocl.us/sbt-${version}.tgz"
     ];
-    sha256 = "0hc361gb71psadx9gj78j0j60fw4sljjk8sl45hw6yzx3hmmkg9g";
+    sha256 = "1hb8gcf3shcp4a65pnlqdlp8j5as7prqvw3d0b5bnfjfi0qbaigm";
   };
 
   patchPhase = ''
diff --git a/pkgs/development/tools/godep/default.nix b/pkgs/development/tools/godep/default.nix
deleted file mode 100644
index 3503a6c2c625..000000000000
--- a/pkgs/development/tools/godep/default.nix
+++ /dev/null
@@ -1,30 +0,0 @@
-{ stdenv, lib, go, fetchurl, fetchgit, fetchhg, fetchbzr, fetchFromGitHub }:
-
-stdenv.mkDerivation rec {
-  version = "73";
-  name = "godep-${version}";
-
-  src = import ./deps.nix {
-    inherit stdenv lib fetchgit;
-  };
-
-  buildInputs = [ go ];
-
-  buildPhase = ''
-    export GOPATH=$src
-    go build -v -o godep github.com/tools/godep
-  '';
-
-  installPhase = ''
-    mkdir -p $out/bin
-    mv godep $out/bin
-  '';
-
-  meta = with stdenv.lib; {
-    description = "Dependency tool for go";
-    homepage = https://github.com/tools/godep;
-    license = licenses.bsd3;
-    maintainers = with maintainers; [ offline ];
-    platforms = platforms.unix;
-  };
-}
diff --git a/pkgs/development/tools/godep/deps.nix b/pkgs/development/tools/godep/deps.nix
deleted file mode 100644
index 10071fa51955..000000000000
--- a/pkgs/development/tools/godep/deps.nix
+++ /dev/null
@@ -1,67 +0,0 @@
-# This file was generated by go2nix.
-{ stdenv, lib, fetchgit }:
-
-let
-  goDeps = [
-    {
-      root = "github.com/kr/fs";
-      src = fetchgit {
-        url = "https://github.com/kr/fs.git";
-        rev = "2788f0dbd16903de03cb8186e5c7d97b69ad387b";
-        sha256 = "1c0fipl4rsh0v5liq1ska1dl83v3llab4k6lm8mvrx9c4dyp71ly";
-      };
-    }
-    {
-      root = "github.com/tools/godep";
-      src = fetchgit {
-        url = "https://github.com/tools/godep.git";
-        rev = "f4edf338389e6e2bde0e8307886718133dc0613e";
-        sha256 = "1jdza8kwnzdsh3layqjzy9dnr92xdg3kfhnzvqkq3p50vsdims9w";
-      };
-    }
-    {
-      root = "github.com/kr/pretty";
-      src = fetchgit {
-        url = "https://github.com/kr/pretty";
-        rev = "f31442d60e51465c69811e2107ae978868dbea5c";
-        sha256 = "12nczwymikxmivb10q5ml5yxrwpz9s8p6k4vqig9g9707yhpxrkh";
-      };
-    }
-    {
-      root = "github.com/kr/text";
-      src = fetchgit {
-        url = "https://github.com/kr/text";
-        rev = "6807e777504f54ad073ecef66747de158294b639";
-        sha256 = "1wkszsg08zar3wgspl9sc8bdsngiwdqmg3ws4y0bh02sjx5a4698";
-      };
-    }
-    {
-      root = "github.com/pmezard/go-difflib";
-      src = fetchgit {
-        url = "https://github.com/pmezard/go-difflib";
-        rev = "f78a839676152fd9f4863704f5d516195c18fc14";
-        sha256 = "1bws3qyy572b62i3wkwfr1aw1g2nwcim2sy42jqsvh9pajjsf1vz";
-      };
-    }
-    {
-      root = "golang.org/x/tools";
-      src = fetchgit {
-        url = "https://go.googlesource.com/tools";
-        rev = "1f1b3322f67af76803c942fd237291538ec68262";
-        sha256 = "0h2yarcvcgg1px20r8n58psra1czv0sgly5gins2q3wp25iql6gj";
-      };
-    }
-  ];
-
-in
-
-stdenv.mkDerivation rec {
-  name = "go-deps";
-
-  buildCommand =
-    lib.concatStrings
-      (map (dep: ''
-              mkdir -p $out/src/`dirname ${dep.root}`
-              ln -s ${dep.src} $out/src/${dep.root}
-            '') goDeps);
-}
diff --git a/pkgs/games/multimc/default.nix b/pkgs/games/multimc/default.nix
index 35444f82f66e..c6697f5806d4 100644
--- a/pkgs/games/multimc/default.nix
+++ b/pkgs/games/multimc/default.nix
@@ -4,12 +4,12 @@ let
   libpath = with xorg; stdenv.lib.makeLibraryPath [ libX11 libXext libXcursor libXrandr libXxf86vm libpulseaudio ];
 in stdenv.mkDerivation rec {
   name = "multimc-${version}";
-  version = "0.6.1";
+  version = "0.6.2";
   src = fetchFromGitHub {
     owner = "MultiMC";
     repo = "MultiMC5";
     rev = version;
-    sha256 = "0glsf4vfir8w24bpinf3cx2ninrcp7hpq9cl463wl78dvqfg47kx";
+    sha256 = "07jrr6si8nzfqwf073zhgw47y6snib23ad3imh1ik1nn5r7wqy3c";
     fetchSubmodules = true;
   };
   nativeBuildInputs = [ cmake file makeWrapper ];
@@ -18,6 +18,9 @@ in stdenv.mkDerivation rec {
   enableParallelBuilding = true;
 
   postInstall = ''
+    mkdir -p $out/share/{applications,pixmaps}
+    cp ../application/resources/multimc/scalable/multimc.svg $out/share/pixmaps
+    cp ../application/package/linux/multimc.desktop $out/share/applications
     wrapProgram $out/bin/MultiMC --add-flags "-d \$HOME/.multimc/" --set GAME_LIBRARY_PATH /run/opengl-driver/lib:${libpath} --prefix PATH : ${jdk}/bin/
   '';
 
diff --git a/pkgs/servers/computing/slurm/default.nix b/pkgs/servers/computing/slurm/default.nix
index b0460f21bfaf..7a03bf75802b 100644
--- a/pkgs/servers/computing/slurm/default.nix
+++ b/pkgs/servers/computing/slurm/default.nix
@@ -1,5 +1,9 @@
-{ stdenv, fetchurl, pkgconfig, libtool, curl, python, munge, perl, pam, openssl
+{ stdenv, fetchurl, pkgconfig, libtool, curl
+, python, munge, perl, pam, openssl
 , ncurses, mysql, gtk2, lua, hwloc, numactl
+, readline, freeipmi, libssh2, xorg
+# enable internal X11 support via libssh2
+, enableX11 ? true
 }:
 
 stdenv.mkDerivation rec {
@@ -13,6 +17,11 @@ stdenv.mkDerivation rec {
 
   outputs = [ "out" "dev" ];
 
+  prePatch = stdenv.lib.optional enableX11 ''
+    substituteInPlace src/common/x11_util.c \
+        --replace '"/usr/bin/xauth"' '"${xorg.xauth}/bin/xauth"'
+  '';
+
   # nixos test fails to start slurmd with 'undefined symbol: slurm_job_preempt_mode'
   # https://groups.google.com/forum/#!topic/slurm-devel/QHOajQ84_Es
   # this doesn't fix tests completely at least makes slurmd to launch
@@ -20,14 +29,20 @@ stdenv.mkDerivation rec {
 
   nativeBuildInputs = [ pkgconfig libtool ];
   buildInputs = [
-    curl python munge perl pam openssl mysql.connector-c ncurses gtk2 lua hwloc numactl
-  ];
+    curl python munge perl pam openssl
+      mysql.connector-c ncurses gtk2
+      lua hwloc numactl readline freeipmi
+  ] ++ stdenv.lib.optionals enableX11 [ libssh2 xorg.xauth ];
 
-  configureFlags =
+  configureFlags = with stdenv.lib;
     [ "--with-munge=${munge}"
       "--with-ssl=${openssl.dev}"
+      "--with-hwloc=${hwloc.dev}"
+      "--with-freeipmi=${freeipmi}"
       "--sysconfdir=/etc/slurm"
-    ] ++ stdenv.lib.optional (gtk2 == null)  "--disable-gtktest";
+    ] ++ (optional (gtk2 == null)  "--disable-gtktest")
+      ++ (optional enableX11 "--with-libssh2=${libssh2.dev}");
+
 
   preConfigure = ''
     patchShebangs ./doc/html/shtml2html.py
@@ -45,6 +60,6 @@ stdenv.mkDerivation rec {
     description = "Simple Linux Utility for Resource Management";
     platforms = platforms.linux;
     license = licenses.gpl2;
-    maintainers = [ maintainers.jagajaga ];
+    maintainers = with maintainers; [ jagajaga markuskowa ];
   };
 }
diff --git a/pkgs/servers/xmpp/prosody/default.nix b/pkgs/servers/xmpp/prosody/default.nix
index 6f092dd80cde..40f630999450 100644
--- a/pkgs/servers/xmpp/prosody/default.nix
+++ b/pkgs/servers/xmpp/prosody/default.nix
@@ -25,12 +25,12 @@ let
 in
 
 stdenv.mkDerivation rec {
-  version = "0.10.1";
+  version = "0.10.2";
   name = "prosody-${version}";
 
   src = fetchurl {
     url = "http://prosody.im/downloads/source/${name}.tar.gz";
-    sha256 = "1kmmpkkgymg1r8r0k8j83pgmiskg1phl8hmpzjrnvlvsfnrnjplr";
+    sha256 = "13knr7izscw0zx648b9582dx11aap4cq9bzfiqh5ykd7wwsz1dbm";
   };
 
   communityModules = fetchhg {
diff --git a/pkgs/tools/security/pass/extensions/audit.nix b/pkgs/tools/security/pass/extensions/audit.nix
new file mode 100644
index 000000000000..79dd1fadb01c
--- /dev/null
+++ b/pkgs/tools/security/pass/extensions/audit.nix
@@ -0,0 +1,42 @@
+{ stdenv, pass, fetchFromGitHub, pythonPackages, makeWrapper }:
+
+let
+  pythonEnv = pythonPackages.python.withPackages (p: [ p.requests ]);
+
+in stdenv.mkDerivation rec {
+  name = "pass-audit-${version}";
+  version = "0.1";
+
+  src = fetchFromGitHub {
+    owner = "roddhjav";
+    repo = "pass-audit";
+    rev = "v${version}";
+    sha256 = "0v0db8bzpcaa7zqz17syn3c78mgvw4mpg8qg1gh5rmbjsjfxw6sm";
+  };
+
+  nativeBuildInputs = [ makeWrapper ];
+
+  buildInputs = [ pythonEnv ];
+
+  patchPhase = ''
+    sed -i -e "s|/usr/lib|$out/lib|" audit.bash
+    sed -i -e 's|$0|${pass}/bin/pass|' audit.bash
+  '';
+
+  dontBuild = true;
+
+  installFlags = [ "PREFIX=$(out)" ];
+
+  postFixup = ''
+    wrapProgram $out/lib/password-store/extensions/audit.bash \
+      --prefix PATH : "${pythonEnv}/bin" \
+      --run "export PREFIX"
+  '';
+
+  meta = with stdenv.lib; {
+    description = "Pass extension for auditing your password repository.";
+    homepage = https://github.com/roddhjav/pass-audit;
+    license = licenses.gpl3Plus;
+    platforms = platforms.unix;
+  };
+}
diff --git a/pkgs/tools/security/pass/extensions/default.nix b/pkgs/tools/security/pass/extensions/default.nix
index dfb853c0a0bf..f69687e512b8 100644
--- a/pkgs/tools/security/pass/extensions/default.nix
+++ b/pkgs/tools/security/pass/extensions/default.nix
@@ -3,6 +3,9 @@
 with pkgs;
 
 {
+  pass-audit = callPackage ./audit.nix {
+    pythonPackages = python3Packages;
+  };
   pass-import = callPackage ./import.nix {
     pythonPackages = python3Packages;
   };
diff --git a/pkgs/tools/security/pass/extensions/import.nix b/pkgs/tools/security/pass/extensions/import.nix
index 8ba4abc5e3db..9e69cf376210 100644
--- a/pkgs/tools/security/pass/extensions/import.nix
+++ b/pkgs/tools/security/pass/extensions/import.nix
@@ -18,13 +18,18 @@ in stdenv.mkDerivation rec {
 
   buildInputs = [ pythonEnv ];
 
+  patchPhase = ''
+    sed -i -e 's|$0|${pass}/bin/pass|' import.bash
+  '';
+
   dontBuild = true;
 
   installFlags = [ "PREFIX=$(out)" ];
 
   postFixup = ''
     wrapProgram $out/lib/password-store/extensions/import.bash \
-      --prefix PATH : "${pythonEnv}/bin"
+      --prefix PATH : "${pythonEnv}/bin" \
+      --run "export PREFIX"
   '';
 
   meta = with stdenv.lib; {
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 5a561d6ff0c2..cc8bd0773769 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -12940,6 +12940,7 @@ with pkgs;
 
   samba4 = callPackage ../servers/samba/4.x.nix {
     python = python2;
+    libbsd = libbsd-freedesktop;
   };
 
   sambaMaster = callPackage ../servers/samba/master.nix { };
@@ -13908,8 +13909,6 @@ with pkgs;
 
   golint = callPackage ../development/tools/golint { };
 
-  godep = callPackage ../development/tools/godep { };
-
   godef = callPackage ../development/tools/godef { };
 
   goimports = callPackage ../development/tools/goimports { };
@@ -17499,6 +17498,8 @@ with pkgs;
 
   ptask = callPackage ../applications/misc/ptask { };
 
+  pulseaudio-ctl = callPackage ../applications/audio/pulseaudio-ctl { };
+
   pulseaudio-dlna = callPackage ../applications/audio/pulseaudio-dlna { };
 
   pulseview = libsForQt5.callPackage ../applications/science/electronics/pulseview { };
@@ -21493,6 +21494,8 @@ with pkgs;
 
   libbsd = netbsd.compat;
 
+  libbsd-freedesktop = callPackage ../development/libraries/libbsd {};
+
   inherit (recurseIntoAttrs (callPackages ../os-specific/bsd { }))
           netbsd;