diff options
| author | mimadrid <mimadrid@ucm.es> | 2016-06-24 15:14:08 +0200 |
|---|---|---|
| committer | mimadrid <mimadrid@ucm.es> | 2016-06-24 21:08:17 +0200 |
| commit | 14feec44e4a31b4df7ce166e7d7dfef3c7f81e29 (patch) | |
| tree | 43d396cb63ed3cbfc7c5751f71397cf3d502ebb0 | |
| parent | d3da5cbf449948e5b058cac5b19510c7c0955a55 (diff) | |
| download | nixlib-14feec44e4a31b4df7ce166e7d7dfef3c7f81e29.tar nixlib-14feec44e4a31b4df7ce166e7d7dfef3c7f81e29.tar.gz nixlib-14feec44e4a31b4df7ce166e7d7dfef3c7f81e29.tar.bz2 nixlib-14feec44e4a31b4df7ce166e7d7dfef3c7f81e29.tar.lz nixlib-14feec44e4a31b4df7ce166e7d7dfef3c7f81e29.tar.xz nixlib-14feec44e4a31b4df7ce166e7d7dfef3c7f81e29.tar.zst nixlib-14feec44e4a31b4df7ce166e7d7dfef3c7f81e29.zip | |
samtools: refactoring
| -rw-r--r-- | pkgs/applications/science/biology/samtools/default.nix | 16 |
1 files changed, 11 insertions, 5 deletions
diff --git a/pkgs/applications/science/biology/samtools/default.nix b/pkgs/applications/science/biology/samtools/default.nix index 9535609fa783..e97af1ea0ee6 100644 --- a/pkgs/applications/science/biology/samtools/default.nix +++ b/pkgs/applications/science/biology/samtools/default.nix @@ -1,19 +1,25 @@ -{ stdenv, fetchurl, zlib, ncurses }: +{ stdenv, fetchurl, zlib, htslib, ncurses ? null }: stdenv.mkDerivation rec { - name = "samtools-${version}"; + name = "${pname}-${version}"; + pname = "samtools"; version = "1.3.1"; src = fetchurl { - url = "https://github.com/samtools/samtools/releases/download/${version}/${name}.tar.bz2"; + url = "https://github.com/samtools/${pname}/releases/download/${version}/${name}.tar.bz2"; sha256 = "0znnnxc467jbf1as2dpskrjhfh8mbll760j6w6rdkwlwbqsp8gbc"; }; - buildInputs = [ zlib ncurses ]; + buildInputs = [ zlib ncurses htslib ]; + + configureFlags = [ "--with-htslib=${htslib}" ] + ++ stdenv.lib.optional (ncurses == null) "--without-curses"; meta = with stdenv.lib; { - description = "Tools (written in C using htslib) for manipulating next-generation sequencing data"; + description = "Tools for manipulating SAM/BAM/CRAM format"; license = licenses.mit; homepage = http://www.htslib.org/; + platforms = platforms.unix; + maintainers = [ maintainers.mimadrid ]; }; } |